BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033772
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FLN4|RK27_ARATH 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana
GN=RPL27 PE=2 SV=1
Length = 198
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 90/113 (79%), Gaps = 10/113 (8%)
Query: 1 MATASMSASLIGSFKGLSLSSSSSSSFLKGDFTVCPK-SVTVSLPPTS---PLPLTIESA 56
MAT SMS +LIG+FKGLSLSS+SS +GD + PK S TV+LP + P+PLTIESA
Sbjct: 3 MAT-SMSLNLIGAFKGLSLSSTSSFL--RGDLSFSPKTSFTVTLPLENLQAPIPLTIESA 59
Query: 57 HKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
HKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAIIVRQRGTK GK G+ +
Sbjct: 60 HKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGK 112
>sp|P30155|RK27_TOBAC 50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum
GN=RPL27 PE=1 SV=1
Length = 179
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/109 (69%), Positives = 84/109 (77%), Gaps = 12/109 (11%)
Query: 5 SMSASLIGSFKGLSLSSSSSSSFLKGDF----TVCPKSVTVSLPPTSPLPLTIESAHKKG 60
++S SL+G+FKGLSL+SSSS KGDF V PK +VS P SPL TIESAHKKG
Sbjct: 2 AVSFSLVGAFKGLSLASSSSFL--KGDFGAAFPVAPK-FSVSFPLKSPL--TIESAHKKG 56
Query: 61 AGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
AGSTKNGRDS GQRLGVKIFGDQVAKPG+IIVRQRGTK GK GL +
Sbjct: 57 AGSTKNGRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKFHPGKNVGLGK 105
>sp|O65037|RK27_ORYSJ 50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp.
japonica GN=RPL27 PE=2 SV=1
Length = 195
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 7/102 (6%)
Query: 4 ASMSASLIGSFKGLSLSSSSSSS----FLKGDFTVC--PKSVTVSLPPTSPLP-LTIESA 56
ASM+ +L+G+FKG+SLSS SS FL+ D V + +P T P+ LTI+ A
Sbjct: 2 ASMAFTLVGAFKGMSLSSPCHSSSSASFLRADRVSLSVGGGVGMGVPMTMPVRRLTIQMA 61
Query: 57 HKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
HKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAII+RQRGT+
Sbjct: 62 HKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIIRQRGTR 103
>sp|P82190|RK27_SPIOL 50S ribosomal protein L27, chloroplastic (Fragment) OS=Spinacia
oleracea GN=RPL27 PE=1 SV=1
Length = 58
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 48/54 (88%), Gaps = 3/54 (5%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
AHKKGAGSTKNGRDS+GQRLGVKI+GDQVAKPGAII+RQRGTK GK G+ +
Sbjct: 1 AHKKGAGSTKNGRDSKGQRLGVKIYGDQVAKPGAIIIRQRGTKFHPGKNVGIGK 54
>sp|A8Z619|RL27_SULMW 50S ribosomal protein L27 OS=Sulcia muelleri (strain GWSS)
GN=rpmA PE=3 SV=1
Length = 84
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 39/43 (90%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GS++NGRDS +RLGVK+FG Q+AKPG+II+RQRGTK
Sbjct: 2 AHKKGVGSSRNGRDSFSKRLGVKLFGGQIAKPGSIIIRQRGTK 44
>sp|Q1LSJ8|RL27_BAUCH 50S ribosomal protein L27 OS=Baumannia cicadellinicola subsp.
Homalodisca coagulata GN=rpmA PE=3 SV=1
Length = 84
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 37/43 (86%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK GST+NGRDS +RLGVKIFG Q+AK G+II+RQRGTK
Sbjct: 2 AHKKAGGSTRNGRDSESKRLGVKIFGHQIAKAGSIIIRQRGTK 44
>sp|B7JZA3|RL27_CYAP8 50S ribosomal protein L27 OS=Cyanothece sp. (strain PCC 8801)
GN=rpmA PE=3 SV=1
Length = 87
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 36/43 (83%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GST+NGRDSR QRLGVK +G QV K G I+VRQRGTK
Sbjct: 2 AHKKGTGSTRNGRDSRAQRLGVKRYGGQVVKAGNILVRQRGTK 44
>sp|B1WWL8|RL27_CYAA5 50S ribosomal protein L27 OS=Cyanothece sp. (strain ATCC 51142)
GN=rpmA PE=3 SV=1
Length = 87
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GST+NGRDSR QRLGVK +G QV K G I++RQRGTK
Sbjct: 2 AHKKGTGSTRNGRDSRSQRLGVKRYGGQVVKAGNILIRQRGTK 44
>sp|Q4G3B1|RK27_EMIHU 50S ribosomal protein L27, chloroplastic OS=Emiliania huxleyi
GN=rpl27 PE=3 SV=1
Length = 87
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 35/41 (85%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRG 96
AHKKGAGSTKNGRDS +RLGVK++G+Q K G II+RQRG
Sbjct: 2 AHKKGAGSTKNGRDSNSKRLGVKVYGNQAVKAGGIIIRQRG 42
>sp|B0JQG5|RL27_MICAN 50S ribosomal protein L27 OS=Microcystis aeruginosa (strain
NIES-843) GN=rpmA PE=3 SV=1
Length = 89
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GST+NGRDSR QRLGVK +G QV K G I++RQRGTK
Sbjct: 2 AHKKGTGSTRNGRDSRSQRLGVKRYGGQVVKAGNILIRQRGTK 44
>sp|Q8D278|RL27_WIGBR 50S ribosomal protein L27 OS=Wigglesworthia glossinidia brevipalpis
GN=rpmA PE=3 SV=1
Length = 87
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 43/60 (71%), Gaps = 5/60 (8%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTIQYSL 112
AHKK GST+NGRDS G+RLGVK+FG Q A PG IIVRQRGTK GK G + YSL
Sbjct: 2 AHKKAGGSTRNGRDSIGKRLGVKLFGGQKAYPGNIIVRQRGTKFHPGKNVGCGK--DYSL 59
>sp|P41545|RK27_PLECA 50S ribosomal protein L27, chloroplastic OS=Pleurochrysis
carterae GN=rpl27 PE=3 SV=1
Length = 82
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 35/41 (85%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRG 96
AHKKGAGSTKNGRDS +RLGVK++GDQ K G II+RQRG
Sbjct: 2 AHKKGAGSTKNGRDSNSKRLGVKVYGDQPVKKGGIIIRQRG 42
>sp|Q88Q09|RL27_PSEPK 50S ribosomal protein L27 OS=Pseudomonas putida (strain KT2440)
GN=rpmA PE=3 SV=1
Length = 85
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 36/43 (83%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK GST+NGRDS +RLGVK++G QV KPG IIVRQRGT+
Sbjct: 2 AHKKAGGSTRNGRDSESKRLGVKMYGGQVIKPGNIIVRQRGTE 44
>sp|B0KMF5|RL27_PSEPG 50S ribosomal protein L27 OS=Pseudomonas putida (strain GB-1)
GN=rpmA PE=3 SV=1
Length = 85
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 36/43 (83%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK GST+NGRDS +RLGVK++G QV KPG IIVRQRGT+
Sbjct: 2 AHKKAGGSTRNGRDSESKRLGVKMYGGQVIKPGNIIVRQRGTE 44
>sp|A5VYC5|RL27_PSEP1 50S ribosomal protein L27 OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=rpmA PE=3 SV=1
Length = 85
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 36/43 (83%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK GST+NGRDS +RLGVK++G QV KPG IIVRQRGT+
Sbjct: 2 AHKKAGGSTRNGRDSESKRLGVKMYGGQVIKPGNIIVRQRGTE 44
>sp|Q1IF14|RL27_PSEE4 50S ribosomal protein L27 OS=Pseudomonas entomophila (strain L48)
GN=rpmA PE=3 SV=1
Length = 85
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 36/43 (83%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK GST+NGRDS +RLGVK++G QV KPG IIVRQRGT+
Sbjct: 2 AHKKAGGSTRNGRDSESKRLGVKMYGGQVIKPGNIIVRQRGTE 44
>sp|Q5N598|RL27_SYNP6 50S ribosomal protein L27 OS=Synechococcus sp. (strain ATCC 27144
/ PCC 6301 / SAUG 1402/1) GN=rpmA PE=3 SV=1
Length = 88
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GST+NGRDS QRLGVK FG +V + G+IIVRQRGTK
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKKFGGEVVRSGSIIVRQRGTK 44
>sp|Q9Z3H6|RL27_SYNE7 50S ribosomal protein L27 OS=Synechococcus elongatus (strain PCC
7942) GN=rpmA PE=3 SV=1
Length = 88
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GST+NGRDS QRLGVK FG +V + G+IIVRQRGTK
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKKFGGEVVRSGSIIVRQRGTK 44
>sp|Q8DMF2|RL27_THEEB 50S ribosomal protein L27 OS=Thermosynechococcus elongatus
(strain BP-1) GN=rpmA PE=3 SV=1
Length = 86
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GST+NGRDS QRLGVK FG +V K G I+VRQRGTK
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRFGGEVVKAGYILVRQRGTK 44
>sp|A6L8T0|RL27_PARD8 50S ribosomal protein L27 OS=Parabacteroides distasonis (strain
ATCC 8503 / DSM 20701 / NCTC 11152) GN=rpmA PE=3 SV=1
Length = 88
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGT 97
AHKKG GS+KNGR+S+ +RLGVK+FG +VAK G IIVRQRGT
Sbjct: 2 AHKKGVGSSKNGRESQSKRLGVKLFGGEVAKAGNIIVRQRGT 43
>sp|B2IV09|RL27_NOSP7 50S ribosomal protein L27 OS=Nostoc punctiforme (strain ATCC
29133 / PCC 73102) GN=rpmA PE=3 SV=1
Length = 98
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GST+NGRDS QRLGVK +G QV + G I+VRQRGTK
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRYGGQVVRAGNILVRQRGTK 44
>sp|Q1GZ52|RL27_METFK 50S ribosomal protein L27 OS=Methylobacillus flagellatus (strain
KT / ATCC 51484 / DSM 6875) GN=rpmA PE=3 SV=1
Length = 85
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 34/43 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK GS++NGRDS QRLGVK FGDQ G+IIVRQRGTK
Sbjct: 2 AHKKAGGSSRNGRDSNAQRLGVKAFGDQFVSAGSIIVRQRGTK 44
>sp|Q10ZG7|RL27_TRIEI 50S ribosomal protein L27 OS=Trichodesmium erythraeum (strain
IMS101) GN=rpmA PE=3 SV=1
Length = 95
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GST+NGRDS QRLGVK +G QV K G I+VRQRG+K
Sbjct: 2 AHKKGTGSTRNGRDSNSQRLGVKRYGGQVVKAGNILVRQRGSK 44
>sp|Q022G4|RL27_SOLUE 50S ribosomal protein L27 OS=Solibacter usitatus (strain
Ellin6076) GN=rpmA PE=3 SV=1
Length = 85
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GS+KNGRDS QRLGVK+FG Q+ G+IIVRQRGTK
Sbjct: 2 AHKKGLGSSKNGRDSNAQRLGVKVFGGQLVPGGSIIVRQRGTK 44
>sp|Q2JT19|RL27_SYNJA 50S ribosomal protein L27 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rpmA PE=3 SV=1
Length = 89
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GST+NGRDS +RLGVK FG ++ PG I+VRQRGTK
Sbjct: 2 AHKKGTGSTRNGRDSNAKRLGVKCFGGELVHPGYILVRQRGTK 44
>sp|O19885|RK27_CYACA 50S ribosomal protein L27, chloroplastic OS=Cyanidium caldarium
GN=rpl27 PE=3 SV=1
Length = 100
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 39/54 (72%), Gaps = 3/54 (5%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
AHKKG+GS+KNGRDS + LG+K FG Q+ PG IIVRQRGTK G GL R
Sbjct: 2 AHKKGSGSSKNGRDSNAKYLGIKKFGKQIVTPGQIIVRQRGTKIKPGLNVGLGR 55
>sp|B1XPD9|RL27_SYNP2 50S ribosomal protein L27 OS=Synechococcus sp. (strain ATCC 27264
/ PCC 7002 / PR-6) GN=rpmA PE=3 SV=1
Length = 88
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GST+NGRDSR QRLGVK +G Q G+I+VRQRGTK
Sbjct: 2 AHKKGTGSTRNGRDSRAQRLGVKRYGGQTVTTGSILVRQRGTK 44
>sp|A6L6D2|RL27_BACV8 50S ribosomal protein L27 OS=Bacteroides vulgatus (strain ATCC 8482
/ DSM 1447 / NCTC 11154) GN=rpmA PE=3 SV=1
Length = 87
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 40/54 (74%), Gaps = 3/54 (5%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
AHKKG GS+KNGR+S +RLGVKIFG Q K G IIVRQRGT+ G+ G+ R
Sbjct: 2 AHKKGVGSSKNGRESASKRLGVKIFGGQACKAGNIIVRQRGTEFHPGENIGMGR 55
>sp|A4G8R5|RL27_HERAR 50S ribosomal protein L27 OS=Herminiimonas arsenicoxydans GN=rpmA
PE=3 SV=1
Length = 85
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG G+T+NGRDS +RLGVK++G QV G II+RQRGTK
Sbjct: 2 AHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIIRQRGTK 44
>sp|B1JF58|RL27_PSEPW 50S ribosomal protein L27 OS=Pseudomonas putida (strain W619)
GN=rpmA PE=3 SV=1
Length = 85
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK GST+NGRDS +RLGVK++G QV K G IIVRQRGT+
Sbjct: 2 AHKKAGGSTRNGRDSESKRLGVKMYGSQVVKAGNIIVRQRGTQ 44
>sp|Q2VZU3|RL27_MAGSA 50S ribosomal protein L27 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rpmA PE=3 SV=1
Length = 89
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK GS++NGRDS GQRLGVK FG ++ PG IIVRQRGTK
Sbjct: 2 AHKKAGGSSRNGRDSAGQRLGVKKFGGELVIPGNIIVRQRGTK 44
>sp|Q1R0C1|RL27_CHRSD 50S ribosomal protein L27 OS=Chromohalobacter salexigens (strain
DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rpmA PE=3
SV=1
Length = 85
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK AGS++NGRDS +RLGVK+FG Q A G IIVRQRGTK
Sbjct: 2 AHKKAAGSSRNGRDSESKRLGVKLFGGQAATAGNIIVRQRGTK 44
>sp|Q9CBZ3|RL27_MYCLE 50S ribosomal protein L27 OS=Mycobacterium leprae (strain TN)
GN=rpmA PE=3 SV=1
Length = 88
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKGA S++NGRDS QRLGVK FG QV K G I+VRQRGTK
Sbjct: 2 AHKKGASSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTK 44
>sp|B8ZRN4|RL27_MYCLB 50S ribosomal protein L27 OS=Mycobacterium leprae (strain Br4923)
GN=rpmA PE=3 SV=1
Length = 88
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKGA S++NGRDS QRLGVK FG QV K G I+VRQRGTK
Sbjct: 2 AHKKGASSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTK 44
>sp|B0C3C2|RL27_ACAM1 50S ribosomal protein L27 OS=Acaryochloris marina (strain MBIC
11017) GN=rpmA PE=3 SV=1
Length = 84
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GST+NGRDS QRLGVK +G +V + G II+RQRGTK
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRYGGEVVRAGNIIIRQRGTK 44
>sp|Q7VQN1|RL27_BLOFL 50S ribosomal protein L27 OS=Blochmannia floridanus GN=rpmA PE=3
SV=1
Length = 85
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
AHKK GST+NGRDSRG+RLGVK FG ++ G IIVRQRG K GK G R
Sbjct: 2 AHKKAGGSTRNGRDSRGKRLGVKHFGGEIISAGTIIVRQRGNKFHPGKYVGCGR 55
>sp|C1F354|RL27_ACIC5 50S ribosomal protein L27 OS=Acidobacterium capsulatum (strain
ATCC 51196 / DSM 11244 / JCM 7670) GN=rpmA PE=3 SV=1
Length = 88
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GS+KNGRDS QRLGVK FG QV G+IIVRQRGT+
Sbjct: 2 AHKKGLGSSKNGRDSNAQRLGVKAFGGQVVTGGSIIVRQRGTR 44
>sp|Q73XP4|RL27_MYCPA 50S ribosomal protein L27 OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=rpmA PE=3 SV=1
Length = 88
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKGA S++NGRDS QRLGVK FG Q+ K G IIVRQRGTK
Sbjct: 2 AHKKGASSSRNGRDSAAQRLGVKRFGGQIVKAGEIIVRQRGTK 44
>sp|A0QDG9|RL27_MYCA1 50S ribosomal protein L27 OS=Mycobacterium avium (strain 104)
GN=rpmA PE=3 SV=1
Length = 88
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKGA S++NGRDS QRLGVK FG Q+ K G IIVRQRGTK
Sbjct: 2 AHKKGASSSRNGRDSAAQRLGVKRFGGQIVKAGEIIVRQRGTK 44
>sp|B6YRH8|RL27_AZOPC 50S ribosomal protein L27 OS=Azobacteroides pseudotrichonymphae
genomovar. CFP2 GN=rpmA PE=3 SV=1
Length = 85
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 36/43 (83%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GS+KNGR+S +RLGVK+FG ++ K G I+VRQRGTK
Sbjct: 2 AHKKGVGSSKNGRESHSKRLGVKVFGGEICKAGDILVRQRGTK 44
>sp|B8HUY8|RL27_CYAP4 50S ribosomal protein L27 OS=Cyanothece sp. (strain PCC 7425 /
ATCC 29141) GN=rpmA PE=3 SV=1
Length = 89
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GST+NGRDS QRLGVK +G +V + G I+VRQRGTK
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRYGGEVVRAGNILVRQRGTK 44
>sp|B2HMG2|RL27_MYCMM 50S ribosomal protein L27 OS=Mycobacterium marinum (strain ATCC
BAA-535 / M) GN=rpmA PE=3 SV=1
Length = 88
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKGA S++NGRDS QRLGVK FG QV K G I+VRQRGTK
Sbjct: 2 AHKKGASSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTK 44
>sp|Q3K6K8|RL27_PSEPF 50S ribosomal protein L27 OS=Pseudomonas fluorescens (strain
Pf0-1) GN=rpmA PE=3 SV=1
Length = 85
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK GST+NGRDS +RLGVK++G QV K G IIVRQRGT+
Sbjct: 2 AHKKAGGSTRNGRDSEAKRLGVKMYGGQVIKAGNIIVRQRGTQ 44
>sp|Q4K5T7|RL27_PSEF5 50S ribosomal protein L27 OS=Pseudomonas fluorescens (strain Pf-5
/ ATCC BAA-477) GN=rpmA PE=3 SV=1
Length = 85
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK GST+NGRDS +RLGVK++G QV K G IIVRQRGT+
Sbjct: 2 AHKKAGGSTRNGRDSEAKRLGVKMYGGQVIKAGNIIVRQRGTQ 44
>sp|A6H1P8|RL27_FLAPJ 50S ribosomal protein L27 OS=Flavobacterium psychrophilum (strain
JIP02/86 / ATCC 49511) GN=rpmA PE=3 SV=1
Length = 86
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GS+KNGR+S +RLGVKIFG Q A G IIVRQRG+K
Sbjct: 2 AHKKGVGSSKNGRESESKRLGVKIFGGQAAIAGNIIVRQRGSK 44
>sp|Q1AVU2|RL27_RUBXD 50S ribosomal protein L27 OS=Rubrobacter xylanophilus (strain DSM
9941 / NBRC 16129) GN=rpmA PE=3 SV=1
Length = 86
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GS++NGRDS +RLGVK +GDQ G+IIVRQRGTK
Sbjct: 2 AHKKGGGSSRNGRDSESKRLGVKAYGDQFVSAGSIIVRQRGTK 44
>sp|Q9HVL7|RL27_PSEAE 50S ribosomal protein L27 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rpmA PE=1
SV=3
Length = 85
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 34/43 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK GST+NGRDS +RLGVK+FG Q K G I+VRQRGTK
Sbjct: 2 AHKKAGGSTRNGRDSESKRLGVKLFGGQAVKAGNILVRQRGTK 44
>sp|Q02GB0|RL27_PSEAB 50S ribosomal protein L27 OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=rpmA PE=3 SV=1
Length = 85
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 34/43 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK GST+NGRDS +RLGVK+FG Q K G I+VRQRGTK
Sbjct: 2 AHKKAGGSTRNGRDSESKRLGVKLFGGQAVKAGNILVRQRGTK 44
>sp|B7V0B0|RL27_PSEA8 50S ribosomal protein L27 OS=Pseudomonas aeruginosa (strain
LESB58) GN=rpmA PE=3 SV=1
Length = 85
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 34/43 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK GST+NGRDS +RLGVK+FG Q K G I+VRQRGTK
Sbjct: 2 AHKKAGGSTRNGRDSESKRLGVKLFGGQAVKAGNILVRQRGTK 44
>sp|A6VBV4|RL27_PSEA7 50S ribosomal protein L27 OS=Pseudomonas aeruginosa (strain PA7)
GN=rpmA PE=3 SV=1
Length = 85
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 34/43 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKK GST+NGRDS +RLGVK+FG Q K G I+VRQRGTK
Sbjct: 2 AHKKAGGSTRNGRDSESKRLGVKLFGGQAVKAGNILVRQRGTK 44
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,443,939
Number of Sequences: 539616
Number of extensions: 1513736
Number of successful extensions: 4800
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3956
Number of HSP's gapped (non-prelim): 850
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)