Query 033772
Match_columns 112
No_of_seqs 163 out of 549
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 09:55:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_X Ribosomal protein L27; 100.0 4.2E-50 1.4E-54 312.8 1.2 110 1-112 1-119 (198)
2 3v2d_0 50S ribosomal protein L 100.0 3.7E-35 1.3E-39 204.5 5.1 58 55-112 1-62 (85)
3 2zjr_T 50S ribosomal protein L 100.0 7.1E-35 2.4E-39 205.0 5.2 58 55-112 1-62 (91)
4 2ftc_O L27MT, MRP-L27, mitocho 100.0 6E-34 2E-38 192.1 5.3 57 56-112 1-62 (69)
5 3r8s_W 50S ribosomal protein L 100.0 1.2E-29 4.1E-34 173.6 5.0 49 64-112 1-53 (76)
6 3bbo_W Ribosomal protein L24; 82.9 0.24 8.2E-06 38.3 0.0 25 3-32 1-25 (191)
7 2d5d_A Methylmalonyl-COA decar 37.7 16 0.00055 21.3 1.7 19 77-95 19-37 (74)
8 1z6h_A Biotin/lipoyl attachmen 34.3 20 0.00067 21.0 1.7 18 77-94 13-30 (72)
9 2k32_A A; NMR {Campylobacter j 32.3 19 0.00063 23.3 1.4 19 77-95 15-33 (116)
10 2auk_A DNA-directed RNA polyme 31.1 19 0.00064 26.6 1.4 17 77-93 168-184 (190)
11 1dcz_A Transcarboxylase 1.3S s 29.4 26 0.00089 20.8 1.7 19 77-95 22-40 (77)
12 2ejm_A Methylcrotonoyl-COA car 27.8 32 0.0011 22.0 2.0 19 77-95 28-46 (99)
13 1ghj_A E2, E2, the dihydrolipo 27.2 23 0.00079 21.4 1.1 25 72-96 16-40 (79)
14 1qjo_A Dihydrolipoamide acetyl 26.9 29 0.00099 20.9 1.6 26 71-96 14-39 (80)
15 2nn6_I 3'-5' exoribonuclease C 25.4 40 0.0014 25.0 2.4 33 79-111 16-49 (209)
16 1iyu_A E2P, dihydrolipoamide a 23.9 28 0.00095 21.0 1.1 22 75-96 16-37 (79)
17 1bdo_A Acetyl-COA carboxylase; 23.8 32 0.0011 20.7 1.4 19 77-95 25-43 (80)
18 2dn8_A Acetyl-COA carboxylase 22.2 41 0.0014 21.5 1.7 19 77-95 31-49 (100)
19 3o39_A Periplasmic protein rel 21.1 21 0.00071 24.6 0.1 11 11-21 10-20 (108)
No 1
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=4.2e-50 Score=312.83 Aligned_cols=110 Identities=75% Similarity=1.091 Sum_probs=56.5
Q ss_pred Cccc-cccceeeeeeeeeeeccCcccceecCCccccc-CcceecCCCC---CCcceeEEeeeccCCcccCCCCCCCCccc
Q 033772 1 MATA-SMSASLIGSFKGLSLSSSSSSSFLKGDFTVCP-KSVTVSLPPT---SPLPLTIESAHKKGAGSTKNGRDSRGQRL 75 (112)
Q Consensus 1 ~~~~-~~~~~l~~~f~glsl~s~~sssf~~g~~~~~~-~~~~~~~p~~---~~~~~~ir~A~KK~gGStkNgrdS~~KrL 75 (112)
|||| +|+|||+++||||||+| ||||++||.++.. .+..++.|+. +++.++|||||||++|||+|||||++|||
T Consensus 1 ~~~~~~~~~~l~~~f~g~s~ss--sssf~~~~~~~~~~~~~~~~~p~~~~~~~~~l~VRmAhKKggGSTkNGRDS~~KRL 78 (198)
T 3bbo_X 1 MAMATSMSLNLIGAFKGLSLSS--TSSFLRGDLSFSPKTSFTVTLPLENLQAPIPLTIESAHKKGAGSTKNGRDSPGQRL 78 (198)
T ss_dssp ------------------------------------------------------------CCCCSSCCCCCCCCCCCCCC
T ss_pred ChHHHHHHHHHHHHhccccccc--ccceecccccccccccccccccccccccchhhheeeeeccCCCCCCCCCCCCCcee
Confidence 4544 49999999999999999 7889999998877 7777888854 67889999999999999999999999999
Q ss_pred ceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772 76 GVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL 112 (112)
Q Consensus 76 GvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl 112 (112)
|||++|||+|+||+||||||||+ |+|||||||| |||+
T Consensus 79 GVK~~gGq~V~aGnIIVRQRGTkfhPG~NVG~GkDhTLFAl 119 (198)
T 3bbo_X 79 GVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSL 119 (198)
T ss_dssp SCSSSBCCSSCSCCSSSSCCCCSSCCCCSSSSCCCCCSBCC
T ss_pred eEEecCCeEeccCcEEEeccCceEcCCCCeeecCCCceEec
Confidence 99999999999999999999999 9999999999 9996
No 2
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=100.00 E-value=3.7e-35 Score=204.52 Aligned_cols=58 Identities=57% Similarity=0.925 Sum_probs=49.6
Q ss_pred eeeccCCcccCCCCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772 55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL 112 (112)
Q Consensus 55 ~A~KK~gGStkNgrdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl 112 (112)
|||||++|||+|||||++||||||+++||+|.||+||||||||+ |+|||||||| ||||
T Consensus 1 MAhKK~gGStkNGrdS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl 62 (85)
T 3v2d_0 1 MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFAL 62 (85)
T ss_dssp --------CCSCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSEEECTTEEECTTCCEEES
T ss_pred CCcccCCCCCCCCCCCCCccceeEecCCeEEcCCeEEEecCCccCcCCCCEeEcCCCeEEEe
Confidence 89999999999999999999999999999999999999999999 9999999999 9996
No 3
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=100.00 E-value=7.1e-35 Score=205.03 Aligned_cols=58 Identities=59% Similarity=0.893 Sum_probs=56.5
Q ss_pred eeeccCCcccCCCCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772 55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL 112 (112)
Q Consensus 55 ~A~KK~gGStkNgrdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl 112 (112)
|||||++|||+|||||+|||||||+++||+|.||+||||||||+ |+|||||||| ||||
T Consensus 1 mAhKK~~GSt~NGRdS~~krLGvK~~gGq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl 62 (91)
T 2zjr_T 1 MAHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFAL 62 (91)
T ss_dssp -CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEES
T ss_pred CCcccCCCCCCCCCCCCCceeeEEecCCeEEcCCeEEEecCCCEEcCCCCEEEcCCCcEEec
Confidence 79999999999999999999999999999999999999999999 9999999999 9996
No 4
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=100.00 E-value=6e-34 Score=192.07 Aligned_cols=57 Identities=39% Similarity=0.604 Sum_probs=56.3
Q ss_pred eeccCCcccCC-CCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772 56 AHKKGAGSTKN-GRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL 112 (112)
Q Consensus 56 A~KK~gGStkN-grdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl 112 (112)
||||++|||+| ||||+|||||||+++||+|.||+||||||||+ |+|||||||| |||+
T Consensus 1 A~KK~~GSt~N~grdS~~krlGvK~~~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~TLfAl 62 (69)
T 2ftc_O 1 ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYAL 62 (69)
T ss_pred CcccccCcccCCCCCCCCceeeEEecCCeEecCCeEEEecCCCeEcCCCCeeecCCCcEEEc
Confidence 89999999999 99999999999999999999999999999999 9999999999 9996
No 5
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=99.96 E-value=1.2e-29 Score=173.62 Aligned_cols=49 Identities=53% Similarity=0.798 Sum_probs=48.2
Q ss_pred cCCCCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772 64 TKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL 112 (112)
Q Consensus 64 tkNgrdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl 112 (112)
|+|||||++||||||+++||+|+||+||||||||+ |+|||||||| |||+
T Consensus 1 t~NGRDS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVG~GkD~TLfAl 53 (76)
T 3r8s_W 1 TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAK 53 (76)
T ss_dssp CCCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSSEECTTEEECTTSCEEES
T ss_pred CCCCCCCCcccceEEecCCeEEecCcEEEeccCccCcCCCCeeecCCCeEEEc
Confidence 68999999999999999999999999999999999 9999999999 9997
No 6
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=82.91 E-value=0.24 Score=38.31 Aligned_cols=25 Identities=52% Similarity=0.623 Sum_probs=0.0
Q ss_pred cccccceeeeeeeeeeeccCcccceecCCc
Q 033772 3 TASMSASLIGSFKGLSLSSSSSSSFLKGDF 32 (112)
Q Consensus 3 ~~~~~~~l~~~f~glsl~s~~sssf~~g~~ 32 (112)
||+| .|-++|.+|||+| ++|+..-.
T Consensus 1 ~~~~--~~~~~~~~~~~~~---~~~~~~~~ 25 (191)
T 3bbo_W 1 MAAM--VLQSSFTSLSLSS---NSFLGQRL 25 (191)
T ss_dssp ------------------------------
T ss_pred Ccch--hhhhhhhcccccc---ccccCccc
Confidence 4567 7889999999977 66876655
No 7
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=37.73 E-value=16 Score=21.34 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=15.1
Q ss_pred eEeeCCeEeecCcEEEeec
Q 033772 77 VKIFGDQVAKPGAIIVRQR 95 (112)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQR 95 (112)
+....|+.|++|++|++-.
T Consensus 19 ~~v~~G~~V~~G~~l~~i~ 37 (74)
T 2d5d_A 19 VLVRVGDRVRVGQGLLVLE 37 (74)
T ss_dssp ECCCTTCEECTTCEEEEEE
T ss_pred EEcCCCCEeCCCCEEEEEe
Confidence 3556899999999998854
No 8
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=34.30 E-value=20 Score=20.98 Aligned_cols=18 Identities=11% Similarity=0.123 Sum_probs=14.2
Q ss_pred eEeeCCeEeecCcEEEee
Q 033772 77 VKIFGDQVAKPGAIIVRQ 94 (112)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQ 94 (112)
+....|+.|++|+.|++=
T Consensus 13 ~~v~~G~~V~~G~~l~~i 30 (72)
T 1z6h_A 13 VHVKAGDQIEKGQEVAIL 30 (72)
T ss_dssp ECCCTTCEECTTCEEEEE
T ss_pred EEcCCcCEECCCCEEEEE
Confidence 455679999999988873
No 9
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=32.25 E-value=19 Score=23.29 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=15.3
Q ss_pred eEeeCCeEeecCcEEEeec
Q 033772 77 VKIFGDQVAKPGAIIVRQR 95 (112)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQR 95 (112)
+....|+.|++|++|++=.
T Consensus 15 v~v~~G~~V~~Gq~L~~ld 33 (116)
T 2k32_A 15 KLFKAGDKVKKGQTLFIIE 33 (116)
T ss_dssp ECSCTTSEECTTCEEEEEE
T ss_pred EECCCcCEECCCCEEEEEC
Confidence 4456899999999999843
No 10
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=31.12 E-value=19 Score=26.64 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.8
Q ss_pred eEeeCCeEeecCcEEEe
Q 033772 77 VKIFGDQVAKPGAIIVR 93 (112)
Q Consensus 77 vK~~~Gq~V~~G~IIvR 93 (112)
+...+|+.|.+|+||+|
T Consensus 168 i~v~dG~~V~~GdvLAr 184 (190)
T 2auk_A 168 VQLEDGVQISSGDTLAR 184 (190)
T ss_dssp ESSCTTCEECTTCEEEE
T ss_pred EEEcCCCEEcCCCEEEE
Confidence 45678999999999998
No 11
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=29.43 E-value=26 Score=20.76 Aligned_cols=19 Identities=11% Similarity=0.214 Sum_probs=14.8
Q ss_pred eEeeCCeEeecCcEEEeec
Q 033772 77 VKIFGDQVAKPGAIIVRQR 95 (112)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQR 95 (112)
+....|+.|++|++|++-.
T Consensus 22 ~~v~~G~~V~~G~~L~~l~ 40 (77)
T 1dcz_A 22 ILVKEGDTVKAGQTVLVLE 40 (77)
T ss_dssp ECCCTTCEECTTSEEEEEE
T ss_pred EEcCCcCEEcCCCEEEEEE
Confidence 4455899999999998754
No 12
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=27.85 E-value=32 Score=22.05 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=15.4
Q ss_pred eEeeCCeEeecCcEEEeec
Q 033772 77 VKIFGDQVAKPGAIIVRQR 95 (112)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQR 95 (112)
+.+..|+.|++|++|++-.
T Consensus 28 ~~v~~Gd~V~~Gq~L~~ie 46 (99)
T 2ejm_A 28 VFVKAGDKVKAGDSLMVMI 46 (99)
T ss_dssp ECCCTTEEECSSCEEEEEE
T ss_pred EECCCCCEECCCCEEEEEE
Confidence 5566899999999998843
No 13
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=27.17 E-value=23 Score=21.40 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=18.4
Q ss_pred CcccceEeeCCeEeecCcEEEeecC
Q 033772 72 GQRLGVKIFGDQVAKPGAIIVRQRG 96 (112)
Q Consensus 72 ~KrLGvK~~~Gq~V~~G~IIvRQRG 96 (112)
++=.=|.+..|+.|++|+.|++-.-
T Consensus 16 G~i~~~~v~~Gd~V~~G~~l~~ie~ 40 (79)
T 1ghj_A 16 GTVATWHKKPGEAVKRDELIVDIET 40 (79)
T ss_dssp EEECCCSSCTTSEECSSCEEEEEEC
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEc
Confidence 3444466678999999999987643
No 14
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=26.91 E-value=29 Score=20.85 Aligned_cols=26 Identities=8% Similarity=0.014 Sum_probs=18.9
Q ss_pred CCcccceEeeCCeEeecCcEEEeecC
Q 033772 71 RGQRLGVKIFGDQVAKPGAIIVRQRG 96 (112)
Q Consensus 71 ~~KrLGvK~~~Gq~V~~G~IIvRQRG 96 (112)
.++=.=|....|+.|++|++|++-.-
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~ 39 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEG 39 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEES
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEc
Confidence 34444456678999999999987543
No 15
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=25.42 E-value=40 Score=25.04 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=21.2
Q ss_pred eeCCeEeecCcEEEeecCCC-CCceeecccceee
Q 033772 79 IFGDQVAKPGAIIVRQRGTK-GKMWGLARTIQYS 111 (112)
Q Consensus 79 ~~~Gq~V~~G~IIvRQRGtk-G~nVg~GrD~lfA 111 (112)
..+++.|.||+.|....... |.++..--+.|||
T Consensus 16 ~~~~~iV~PGd~l~~~~~~~~G~Gty~~~g~I~A 49 (209)
T 2nn6_I 16 APPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFS 49 (209)
T ss_dssp ----CCCCTTCEEEETTTCCCSSSCEEETTEEEC
T ss_pred cCCCcEEcCCCCCCCCCCeeecCCEEEECCEEEE
Confidence 34577899999998765555 8888764333777
No 16
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=23.95 E-value=28 Score=21.02 Aligned_cols=22 Identities=5% Similarity=-0.002 Sum_probs=16.5
Q ss_pred cceEeeCCeEeecCcEEEeecC
Q 033772 75 LGVKIFGDQVAKPGAIIVRQRG 96 (112)
Q Consensus 75 LGvK~~~Gq~V~~G~IIvRQRG 96 (112)
.-|.+..|+.|++|+.|++-.-
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~le~ 37 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLES 37 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEEC
T ss_pred EEEecCCCCEEcCCCEEEEEEc
Confidence 3455668999999999887643
No 17
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=23.83 E-value=32 Score=20.69 Aligned_cols=19 Identities=16% Similarity=-0.018 Sum_probs=14.8
Q ss_pred eEeeCCeEeecCcEEEeec
Q 033772 77 VKIFGDQVAKPGAIIVRQR 95 (112)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQR 95 (112)
|.+..|+.|++|+.|++-.
T Consensus 25 ~~v~~G~~V~~G~~l~~ie 43 (80)
T 1bdo_A 25 AFIEVGQKVNVGDTLCIVE 43 (80)
T ss_dssp CSCCTTCEECTTCEEEEEE
T ss_pred cccCCcCEECCCCEEEEEE
Confidence 3456899999999998743
No 18
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.24 E-value=41 Score=21.47 Aligned_cols=19 Identities=5% Similarity=0.039 Sum_probs=14.7
Q ss_pred eEeeCCeEeecCcEEEeec
Q 033772 77 VKIFGDQVAKPGAIIVRQR 95 (112)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQR 95 (112)
|.+..|+.|++|+.|++-.
T Consensus 31 ~~v~~Gd~V~~Gq~L~~le 49 (100)
T 2dn8_A 31 YTVEDGGHVEAGSSYAEME 49 (100)
T ss_dssp ESSCTTEEECTTCEEEEEE
T ss_pred EEcCCcCEECCCCEEEEEE
Confidence 4556899999999888744
No 19
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=21.11 E-value=21 Score=24.59 Aligned_cols=11 Identities=55% Similarity=0.842 Sum_probs=7.1
Q ss_pred eeeeeeeeecc
Q 033772 11 IGSFKGLSLSS 21 (112)
Q Consensus 11 ~~~f~glsl~s 21 (112)
-|+||||.|+.
T Consensus 10 ~~~~~~L~LTd 20 (108)
T 3o39_A 10 HGSFKDLNLTD 20 (108)
T ss_dssp ---CCCSCCCH
T ss_pred cCCcCCCCCCH
Confidence 36899999975
Done!