RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 033772
(112 letters)
>gnl|CDD|235464 PRK05435, rpmA, 50S ribosomal protein L27; Validated.
Length = 82
Score = 92.4 bits (231), Expect = 3e-26
Identities = 32/43 (74%), Positives = 34/43 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GST+NGRDS +RLGVK FG Q K G IIVRQRGTK
Sbjct: 2 AHKKGGGSTRNGRDSESKRLGVKRFGGQFVKAGNIIVRQRGTK 44
>gnl|CDD|201553 pfam01016, Ribosomal_L27, Ribosomal L27 protein.
Length = 80
Score = 86.0 bits (214), Expect = 1e-23
Identities = 34/43 (79%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GSTKNGRDS G+RLGVK FG Q K G IIVRQRGTK
Sbjct: 1 AHKKGGGSTKNGRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTK 43
>gnl|CDD|214370 CHL00121, rpl27, ribosomal protein L27; Reviewed.
Length = 86
Score = 80.4 bits (199), Expect = 2e-21
Identities = 31/45 (68%), Positives = 35/45 (77%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKGK 100
AHKKGAGSTKNGRDS +RLGVK FG + G I++RQRGTK K
Sbjct: 2 AHKKGAGSTKNGRDSNAKRLGVKRFGGEKVSAGNILIRQRGTKFK 46
>gnl|CDD|223289 COG0211, RpmA, Ribosomal protein L27 [Translation, ribosomal
structure and biogenesis].
Length = 87
Score = 80.3 bits (199), Expect = 2e-21
Identities = 32/43 (74%), Positives = 35/43 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
AHKKG GST+NGRDS +RLGVK FG Q K G+IIVRQRGTK
Sbjct: 2 AHKKGGGSTRNGRDSESKRLGVKKFGGQFVKAGSIIVRQRGTK 44
>gnl|CDD|232803 TIGR00062, L27, ribosomal protein L27. Eubacterial, chloroplast,
and mitochondrial. Mitochondrial members have an
additional C-terminal domain [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 83
Score = 68.2 bits (167), Expect = 2e-16
Identities = 30/43 (69%), Positives = 33/43 (76%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
A KKG GSTKNGRDS +RLGVK G Q + G+IIVRQRGTK
Sbjct: 2 ATKKGVGSTKNGRDSEAKRLGVKRAGGQFVRAGSIIVRQRGTK 44
>gnl|CDD|217966 pfam04209, HgmA, homogentisate 1,2-dioxygenase. Homogentisate
dioxygenase cleaves the aromatic ring during the
metabolic degradation of Phe and Tyr. Homogentisate
dioxygenase deficiency causes alkaptonuria. The
structure of homogentisate dioxygenase shows that the
enzyme forms a hexamer arrangement comprised of a dimer
of trimers. The active site iron ion is coordinated near
the interface between the trimers.
Length = 422
Score = 29.3 bits (66), Expect = 0.35
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 15 KGLSLSSSSSSSFLKGDFTVCPKSVTVSLPPTSPLPLTIESAHKKGAGSTKNGRDSRGQR 74
K + S + F++G T+ + P S L I + K ++ G
Sbjct: 92 KPFPIPSKEPTDFVEGLHTIAG-----AGDPLSNHGLAIHVYSANKSMENKLFYNADGDF 146
Query: 75 LGV----KI-----FGDQVAKPGAIIVRQRGTK 98
L V ++ FG + PG I V RGT+
Sbjct: 147 LIVPQQGELDLYTEFGRLLVSPGEIAVIPRGTR 179
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 28.2 bits (63), Expect = 0.90
Identities = 18/70 (25%), Positives = 27/70 (38%)
Query: 20 SSSSSSSFLKGDFTVCPKSVTVSLPPTSPLPLTIESAHKKGAGSTKNGRDSRGQRLGVKI 79
SS ++S+ KG KS + +P E A KKG + K GRD +
Sbjct: 409 SSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSK 468
Query: 80 FGDQVAKPGA 89
G + +
Sbjct: 469 AGGKKESVKS 478
>gnl|CDD|216078 pfam00716, Peptidase_S21, Assemblin (Peptidase family S21).
Length = 326
Score = 27.0 bits (60), Expect = 2.4
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 36 PKSVTVSLPPTSPLPLTIESAHKKGA 61
++V +LPPT P+PL I+ H A
Sbjct: 6 RETVKSALPPTKPIPLNID--HLPEA 29
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 26.8 bits (59), Expect = 2.8
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 36 PKSVTVSLPPTSPLPLTIESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIV 92
P++ T +P P T A +T SR + +I Q+A P +II
Sbjct: 245 PQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEASRYELTVTQII--QIAIPASIIA 299
>gnl|CDD|233703 TIGR02063, RNase_R, ribonuclease R. This family consists of an
exoribonuclease, ribonuclease R, also called VacB. It is
one of the eight exoribonucleases reported in E. coli
and is broadly distributed throughout the bacteria. In
E. coli, double mutants of this protein and
polynucleotide phosphorylase are not viable. Scoring
between trusted and noise cutoffs to the model are
shorter, divergent forms from the Chlamydiae, and
divergent forms from the Campylobacterales (including
Helicobacter pylori) and Leptospira interrogans
[Transcription, Degradation of RNA].
Length = 709
Score = 26.5 bits (59), Expect = 3.3
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 65 KNGRDSRG----QRLGVKIFGDQVAKPGAIIVRQRGTKGKM 101
+ R RG KI D+ KP I+ R+RG K+
Sbjct: 404 RKKRKKRGAIDFDSKEAKIILDENGKPIDIVPRERGDAHKL 444
>gnl|CDD|218404 pfam05056, DUF674, Protein of unknown function (DUF674). This
family is found in Arabidopsis thaliana and contains
several uncharacterized proteins.
Length = 462
Score = 25.6 bits (56), Expect = 7.7
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 10 LIGSFKGLSLSSSSSSSFLK-GDFTVCPK---SVTVSLPPTSPL-PLTIESAHKKGAGST 64
L SFK LS ++ SS + C K +T PP + ++ + G T
Sbjct: 324 LFRSFKDLSGDEATESSKCALPHYYNCQKQLLGITTQQPPVYYRYVYSNCISYLRDYGLT 383
Query: 65 KNGRDSRGQRL 75
++ + + +
Sbjct: 384 EDSEKDKLKPV 394
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.128 0.361
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,235,367
Number of extensions: 427382
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 20
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.4 bits)