RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 033772
         (112 letters)



>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli
           [TaxId: 562]}
          Length = 84

 Score = 75.5 bits (186), Expect = 4e-20
 Identities = 32/54 (59%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTK   G   G  R
Sbjct: 1   AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGR 54


>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus
          radiodurans [TaxId: 1299]}
          Length = 84

 Score = 74.4 bits (183), Expect = 1e-19
 Identities = 30/43 (69%), Positives = 34/43 (79%)

Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          AHKKG GS+KNGRDS  + LGVK FG +V K G I+VRQRGTK
Sbjct: 1  AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTK 43


>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus
           [TaxId: 274]}
          Length = 66

 Score = 47.0 bits (112), Expect = 3e-09
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 3/36 (8%)

Query: 74  RLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           RLGVK +  QV + G I+VRQRGT+   GK  G+ R
Sbjct: 1   RLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGR 36


>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
           [TaxId: 562]}
          Length = 295

 Score = 28.0 bits (61), Expect = 0.20
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 31  DFTVCPKSVTVSLPPTSPL 49
              + P ++   LPP  PL
Sbjct: 275 HIEILPAALRCRLPPDCPL 293


>d2pbka1 b.57.1.1 (A:3-230) KSHV protease {Kaposi's
          sarcoma-associated herpesvirus [TaxId: 37296]}
          Length = 228

 Score = 27.8 bits (62), Expect = 0.22
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 36 PKSVTVSLPPTSPLPLTIESAHKKGA 61
          P  VT  LP T PLP+TIE  H    
Sbjct: 25 PDQVTDYLPVTEPLPITIE--HLPET 48


>d1at3a_ b.57.1.1 (A:) HSV-2 protease {Herpes simplex virus type 2
          [TaxId: 10310]}
          Length = 231

 Score = 27.0 bits (60), Expect = 0.39
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 30 GDFTVCPKSVTVSLPPTSPLPLTIESAHKKGA 61
          G+  + P +V  +LPP +PLP+ ++  H+   
Sbjct: 20 GELALDPDTVRAALPPENPLPINVD--HRARC 49


>d1o6ea_ b.57.1.1 (A:) Epstein-Barr virus protease {Human
          herpesvirus 4 [TaxId: 10376]}
          Length = 232

 Score = 27.0 bits (60), Expect = 0.42
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 36 PKSVTVSLPPTSPLPLTIESAHKKGA 61
          P +V   LP   PLPLT+E  H   A
Sbjct: 26 PLTVKSQLPLKKPLPLTVE--HLPDA 49


>d1vzva_ b.57.1.1 (A:) VZV protease {Varicella-Zoster virus
          [TaxId: 10335]}
          Length = 221

 Score = 26.6 bits (59), Expect = 0.51
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)

Query: 36 PKSVTVSLPPTSPLPLTIESAHKKGA 61
          P+ V  +LPPTS +P+ I+  H+K  
Sbjct: 23 PEIVRSALPPTSKIPINID--HRKDC 46


>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 194

 Score = 23.9 bits (52), Expect = 5.0
 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 6/34 (17%)

Query: 68  RDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKGKM 101
           R  + +  G K      AK G I+ R    KG  
Sbjct: 45  RLDKARSQGYK------AKQGVIVARVSVRKGSA 72


>gi|147919682|ref|YP_686574.1|(2-194:196) 50S ribosomal protein L15e
           [uncultured methanogenic archaeon RC-I] 
           gi|121682947|sp|Q0W2Z5.1|RL15E_UNCMA RecName: Full=50S
           ribosomal protein L15e   gi|110621970|emb|CAJ37248.1|
           50S ribosomal protein L15E [uncultured methanogenic
           archaeon RC-I]  E=2e-63 s/c=1.26 id=63% cov=99%
          Length = 193

 Score = 23.9 bits (52), Expect = 5.2
 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 6/34 (17%)

Query: 68  RDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKGKM 101
           R  R + LG K      AK G I+ R    +G  
Sbjct: 45  RLDRARALGYK------AKQGIIVARAHVRRGGR 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.128    0.361 

Gapped
Lambda     K      H
   0.267   0.0683    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 360,477
Number of extensions: 14355
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 14
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.0 bits)