BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033773
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZOM|A Chain A, Crystal Structure Of Cuta1 From Oryza Sativa
pdb|2ZOM|B Chain B, Crystal Structure Of Cuta1 From Oryza Sativa
pdb|2ZOM|C Chain C, Crystal Structure Of Cuta1 From Oryza Sativa
Length = 113
Score = 183 bits (464), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/112 (80%), Positives = 100/112 (89%)
Query: 1 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAE 60
ME S TVPSIVVYVTVPNKEAGK+LA SI+ KLAACVN VPGIESVY W+G++QTDAE
Sbjct: 1 MESTSTTVPSIVVYVTVPNKEAGKRLAGSIISEKLAACVNIVPGIESVYWWEGKVQTDAE 60
Query: 61 ELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 112
ELLIIKTR+SLL+ LTEHVKANHEYDVPEVIALPI GG+ YLEWLK+STR+
Sbjct: 61 ELLIIKTRESLLDALTEHVKANHEYDVPEVIALPIKGGNLKYLEWLKNSTRE 112
>pdb|2ZFH|A Chain A, Crystal Structure Of Putative Cuta1 From Homo Sapiens At
2.05a Resolution
pdb|2ZFH|B Chain B, Crystal Structure Of Putative Cuta1 From Homo Sapiens At
2.05a Resolution
pdb|2ZFH|C Chain C, Crystal Structure Of Putative Cuta1 From Homo Sapiens At
2.05a Resolution
pdb|2ZFH|D Chain D, Crystal Structure Of Putative Cuta1 From Homo Sapiens At
2.05a Resolution
pdb|2ZFH|E Chain E, Crystal Structure Of Putative Cuta1 From Homo Sapiens At
2.05a Resolution
pdb|2ZFH|F Chain F, Crystal Structure Of Putative Cuta1 From Homo Sapiens At
2.05a Resolution
Length = 179
Score = 111 bits (278), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 80/111 (72%), Gaps = 2/111 (1%)
Query: 2 EGNSKTVPSIV--VYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDA 59
+ S VP V +VT PN++ K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+
Sbjct: 58 DSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDS 117
Query: 60 EELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 110
E L++IKT+ SL+ LT+ V++ H Y+V EVIALP+ G+ PYL+W++ T
Sbjct: 118 EVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168
>pdb|1XK8|A Chain A, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|B Chain B, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|C Chain C, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|D Chain D, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|E Chain E, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|F Chain F, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
Length = 147
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 80/111 (72%), Gaps = 2/111 (1%)
Query: 2 EGNSKTVPSIV--VYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDA 59
+ S VP V +VT PN++ K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+
Sbjct: 26 DSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDS 85
Query: 60 EELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 110
E L++IKT+ SL+ LT+ V++ H Y+V EVIALP+ G+ PYL+W++ T
Sbjct: 86 EVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 136
>pdb|1OSC|A Chain A, Crystal Structure Of Rat Cuta1 At 2.15 A Resolution
pdb|1OSC|B Chain B, Crystal Structure Of Rat Cuta1 At 2.15 A Resolution
pdb|1OSC|C Chain C, Crystal Structure Of Rat Cuta1 At 2.15 A Resolution
pdb|1OSC|D Chain D, Crystal Structure Of Rat Cuta1 At 2.15 A Resolution
pdb|1OSC|E Chain E, Crystal Structure Of Rat Cuta1 At 2.15 A Resolution
pdb|1OSC|F Chain F, Crystal Structure Of Rat Cuta1 At 2.15 A Resolution
Length = 126
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 73/99 (73%)
Query: 14 YVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLE 73
+VT PN++ K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+E L++IKT+ SL+
Sbjct: 27 FVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVP 86
Query: 74 TLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 112
LTE V++ H Y+V EVIALP+ G+ PYL W+ T
Sbjct: 87 ALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTES 125
>pdb|1NZA|A Chain A, Divalent Cation Tolerance Protein (Cut A1) From Thermus
Thermophilus Hb8
pdb|1V6H|A Chain A, The Trimeric Structure Of Divalent Cation Tolerance
Protein Cuta1 From Thermus Thermophilus Hb8
pdb|1V6H|B Chain B, The Trimeric Structure Of Divalent Cation Tolerance
Protein Cuta1 From Thermus Thermophilus Hb8
pdb|1V6H|C Chain C, The Trimeric Structure Of Divalent Cation Tolerance
Protein Cuta1 From Thermus Thermophilus Hb8
Length = 103
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 71/99 (71%)
Query: 12 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSL 71
VV +TVP++E + +A+++V+ +LAACVN VPG+ S+Y W+GE+ D E LL++KT
Sbjct: 4 VVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTTHA 63
Query: 72 LETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 110
L E VKA H Y VPE++ALPI G++ YL+WL+ +T
Sbjct: 64 FPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLRENT 102
>pdb|1NAQ|A Chain A, Crystal Structure Of Cuta1 From E.Coli At 1.7 A Resolution
pdb|1NAQ|B Chain B, Crystal Structure Of Cuta1 From E.Coli At 1.7 A Resolution
pdb|1NAQ|C Chain C, Crystal Structure Of Cuta1 From E.Coli At 1.7 A Resolution
pdb|1NAQ|D Chain D, Crystal Structure Of Cuta1 From E.Coli At 1.7 A Resolution
pdb|1NAQ|E Chain E, Crystal Structure Of Cuta1 From E.Coli At 1.7 A Resolution
pdb|1NAQ|F Chain F, Crystal Structure Of Cuta1 From E.Coli At 1.7 A Resolution
Length = 112
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 66/111 (59%)
Query: 1 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAE 60
++ S S+VV T P++ + LA ++ KLAAC +PG S+Y W+G+++ + E
Sbjct: 2 LDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYE 61
Query: 61 ELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 111
+I+KT S + L E +K++H Y PE++ LP+T G YL WL +S R
Sbjct: 62 VQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
>pdb|4E98|A Chain A, Crystal Structure Of Possible Cuta1 Divalent Ion Tolerance
Protein From Cryptosporidium Parvum Iowa Ii
pdb|4E98|B Chain B, Crystal Structure Of Possible Cuta1 Divalent Ion Tolerance
Protein From Cryptosporidium Parvum Iowa Ii
pdb|4E98|C Chain C, Crystal Structure Of Possible Cuta1 Divalent Ion Tolerance
Protein From Cryptosporidium Parvum Iowa Ii
Length = 138
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 66/101 (65%)
Query: 11 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQS 70
I++Y++ PN++ +A+++V +L ACV+ +P + S+Y++KG++ + E +L++KT
Sbjct: 37 ILIYISAPNQDEATSIAKTLVDEELCACVSIIPSVRSIYKFKGQVHDENEVMLLVKTTSQ 96
Query: 71 LLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 111
L TL E V H Y++PE+IA + G++ Y+ W+ + R
Sbjct: 97 LFTTLKEKVTEIHSYELPEIIATKVVYGNENYINWVNQTVR 137
>pdb|3AH6|A Chain A, Remarkable Improvement Of The Heat Stability Of Cuta1 From
E.Coli By Rational Protein Designing
pdb|3AH6|B Chain B, Remarkable Improvement Of The Heat Stability Of Cuta1 From
E.Coli By Rational Protein Designing
pdb|3AH6|C Chain C, Remarkable Improvement Of The Heat Stability Of Cuta1 From
E.Coli By Rational Protein Designing
pdb|3AH6|D Chain D, Remarkable Improvement Of The Heat Stability Of Cuta1 From
E.Coli By Rational Protein Designing
pdb|3AH6|E Chain E, Remarkable Improvement Of The Heat Stability Of Cuta1 From
E.Coli By Rational Protein Designing
pdb|3AH6|F Chain F, Remarkable Improvement Of The Heat Stability Of Cuta1 From
E.Coli By Rational Protein Designing
Length = 112
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 65/111 (58%)
Query: 1 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAE 60
++ S +VV T P++ + LA ++ KLAAC +PG S+Y W+G+++ + E
Sbjct: 2 LDEKSSNTAVVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYE 61
Query: 61 ELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 111
+I+KT S + L E +K++H Y PE++ LP+T G YL WL +S R
Sbjct: 62 VQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
>pdb|3AA9|A Chain A, Crystal Structure Analysis Of The Mutant Cuta1 (E61v) From
E. Coli
pdb|3AA9|B Chain B, Crystal Structure Analysis Of The Mutant Cuta1 (E61v) From
E. Coli
pdb|3AA9|C Chain C, Crystal Structure Analysis Of The Mutant Cuta1 (E61v) From
E. Coli
Length = 112
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 65/111 (58%)
Query: 1 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAE 60
++ S S+VV T P++ + LA ++ KLAAC +PG S+Y W+G+++ +
Sbjct: 2 LDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYV 61
Query: 61 ELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 111
+I+KT S + L E +K++H Y PE++ LP+T G YL WL +S R
Sbjct: 62 VQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
>pdb|3OPK|A Chain A, Crystal Structure Of Divalent-Cation Tolerance Protein
Cuta From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3OPK|B Chain B, Crystal Structure Of Divalent-Cation Tolerance Protein
Cuta From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3OPK|C Chain C, Crystal Structure Of Divalent-Cation Tolerance Protein
Cuta From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
Length = 118
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 63/102 (61%)
Query: 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQ 69
++VV T P++ + LA ++ KLAAC +PG S+Y W+G+++ + E +I+KT
Sbjct: 17 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTV 76
Query: 70 SLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 111
S + L + +K++H Y PE++ LP+T G YL WL +S R
Sbjct: 77 SHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 118
>pdb|3AA8|A Chain A, Crystal Structure Analysis Of The Mutant Cuta1 (S11vE61V)
FROM E. Coli
pdb|3AA8|B Chain B, Crystal Structure Analysis Of The Mutant Cuta1 (S11vE61V)
FROM E. Coli
pdb|3AA8|C Chain C, Crystal Structure Analysis Of The Mutant Cuta1 (S11vE61V)
FROM E. Coli
Length = 112
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 64/111 (57%)
Query: 1 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAE 60
++ S +VV T P++ + LA ++ KLAAC +PG S+Y W+G+++ +
Sbjct: 2 LDEKSSNTAVVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYV 61
Query: 61 ELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 111
+I+KT S + L E +K++H Y PE++ LP+T G YL WL +S R
Sbjct: 62 VQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112
>pdb|3GSD|A Chain A, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|B Chain B, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|C Chain C, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|D Chain D, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|E Chain E, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|F Chain F, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|G Chain G, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|H Chain H, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|I Chain I, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|J Chain J, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|K Chain K, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|L Chain L, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
Length = 122
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 61/100 (61%)
Query: 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQ 69
+IVV T P++ + + LA ++ KLAACV +PG S+Y W+G+++ + E L+ K+
Sbjct: 21 AIVVLCTAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLEQEYEVQLLFKSNT 80
Query: 70 SLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSS 109
+ L ++K +H Y PE++ LP+ G + YL WL +S
Sbjct: 81 DHQQALLTYIKQHHPYQTPELLVLPVRDGDKDYLSWLNAS 120
>pdb|3AHP|A Chain A, Crystal Structure Of Stable Protein, Cuta1, From A
Psychrotrophic Bacterium Shewanella Sp. Sib1
pdb|3AHP|B Chain B, Crystal Structure Of Stable Protein, Cuta1, From A
Psychrotrophic Bacterium Shewanella Sp. Sib1
pdb|3AHP|C Chain C, Crystal Structure Of Stable Protein, Cuta1, From A
Psychrotrophic Bacterium Shewanella Sp. Sib1
pdb|3AHP|D Chain D, Crystal Structure Of Stable Protein, Cuta1, From A
Psychrotrophic Bacterium Shewanella Sp. Sib1
pdb|3AHP|E Chain E, Crystal Structure Of Stable Protein, Cuta1, From A
Psychrotrophic Bacterium Shewanella Sp. Sib1
pdb|3AHP|F Chain F, Crystal Structure Of Stable Protein, Cuta1, From A
Psychrotrophic Bacterium Shewanella Sp. Sib1
Length = 108
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 59/100 (59%)
Query: 11 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQS 70
++++ T P+ + ++A ++V+AKLAACV +ES+Y+W I E + IK +
Sbjct: 7 LLIFTTCPDADIACRIATALVEAKLAACVQIGQAVESIYQWDNNICQSHEVPMQIKCMTT 66
Query: 71 LLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 110
+ + V H Y+VPE IA PI GG PYL+W+K ++
Sbjct: 67 DYPAIEQLVITMHPYEVPEFIATPIIGGFGPYLQWIKDNS 106
>pdb|2E66|A Chain A, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii Ot3,
Mutation D60a
pdb|2E66|B Chain B, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii Ot3,
Mutation D60a
pdb|2E66|C Chain C, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii Ot3,
Mutation D60a
Length = 102
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 11 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQS 70
I+VY T P+ E+ +K+ ++++K +L AC N + + Y W+G+I+ D E I+KTR++
Sbjct: 2 IIVYTTFPDWESAEKVVKTLLKERLIACAN-LREHRAFYWWEGKIEEDKEVGAILKTREA 60
Query: 71 LLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 111
L E L E +K H YDVP +I + + ++ YL+WL T+
Sbjct: 61 LWEELKERIKELHPYDVPAIIRIDVDDVNEDYLKWLIEETK 101
>pdb|1UKU|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed
With Cu2+
pdb|1UMJ|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Cuta In The
Presence Of 3m Guanidine Hydrochloride
pdb|1UMJ|B Chain B, Crystal Structure Of Pyrococcus Horikoshii Cuta In The
Presence Of 3m Guanidine Hydrochloride
Length = 102
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 11 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQS 70
I+VY T P+ E+ +K+ ++++K +L AC N + + Y W+G+I+ D E I+KTR+
Sbjct: 2 IIVYTTFPDWESAEKVVKTLLKERLIACAN-LREHRAFYWWEGKIEEDKEVGAILKTRED 60
Query: 71 LLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 111
L E L E +K H YDVP +I + + ++ YL+WL T+
Sbjct: 61 LWEELKERIKELHPYDVPAIIRIDVDDVNEDYLKWLIEETK 101
>pdb|1P1L|A Chain A, Structure Of The Periplasmic Divalent Cation Tolerance
Protein Cuta From Archaeoglobus Fulgidus
Length = 102
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 12 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSL 71
+Y+T P+ E +++A+ +++ KLAACVN P I+S + W+G+I+ E +I+KTR
Sbjct: 4 FIYITAPSLEEAERIAKRLLEKKLAACVNIFP-IKSFFWWEGKIEAATEFAMIVKTRSEK 62
Query: 72 LETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSS 109
+ + VKA H Y P + A+PI G + +L+W+ +
Sbjct: 63 FAEVRDEVKAMHSYTTPCICAIPIERGLKEFLDWIDET 100
>pdb|1J2V|A Chain A, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii
Length = 102
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 11 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQS 70
I+VY T P+ E+ +K+ ++++K + AC N + + Y W+G+I+ D E I+KTR+
Sbjct: 2 IIVYTTFPDWESAEKVVKTLLKERXIACAN-LREHRAFYWWEGKIEEDKEVGAILKTRED 60
Query: 71 LLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 111
L E L E +K H YDVP +I + + ++ YL+WL T+
Sbjct: 61 LWEELKERIKELHPYDVPAIIRIDVDDVNEDYLKWLIEETK 101
>pdb|1V99|A Chain A, Crystal Structure Of The Periplasmic Divalent Cation
Tolerance Protein Cuta From Pyrococcus Horikoshii Ot3 In
The Presence Of Cucl2
pdb|1V99|B Chain B, Crystal Structure Of The Periplasmic Divalent Cation
Tolerance Protein Cuta From Pyrococcus Horikoshii Ot3 In
The Presence Of Cucl2
pdb|1V99|C Chain C, Crystal Structure Of The Periplasmic Divalent Cation
Tolerance Protein Cuta From Pyrococcus Horikoshii Ot3 In
The Presence Of Cucl2
pdb|1V99|D Chain D, Crystal Structure Of The Periplasmic Divalent Cation
Tolerance Protein Cuta From Pyrococcus Horikoshii Ot3 In
The Presence Of Cucl2
pdb|1V99|E Chain E, Crystal Structure Of The Periplasmic Divalent Cation
Tolerance Protein Cuta From Pyrococcus Horikoshii Ot3 In
The Presence Of Cucl2
pdb|1V99|F Chain F, Crystal Structure Of The Periplasmic Divalent Cation
Tolerance Protein Cuta From Pyrococcus Horikoshii Ot3 In
The Presence Of Cucl2
pdb|1V9B|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed
With Co2+
pdb|1V9B|B Chain B, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed
With Co2+
pdb|1V9B|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed
With Co2+
pdb|1V9B|D Chain D, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed
With Co2+
pdb|1V9B|E Chain E, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed
With Co2+
pdb|1V9B|F Chain F, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed
With Co2+
Length = 102
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 11 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQS 70
I+VY T P+ E+ +K+ ++++K +L A N + + Y W+G+I+ D E I+KTR+
Sbjct: 2 IIVYTTFPDWESAEKVVKTLLKERLIAXAN-LREHRAFYWWEGKIEEDKEVGAILKTRED 60
Query: 71 LLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 111
L E L E +K H YDVP +I + + ++ YL+WL T+
Sbjct: 61 LWEELKERIKELHPYDVPAIIRIDVDDVNEDYLKWLIEETK 101
>pdb|4IYQ|A Chain A, Crystal Structure Of Divalent Ion Tolerance Protein Cuta1
From Ehrlichia Chaffeensis
pdb|4IYQ|B Chain B, Crystal Structure Of Divalent Ion Tolerance Protein Cuta1
From Ehrlichia Chaffeensis
pdb|4IYQ|C Chain C, Crystal Structure Of Divalent Ion Tolerance Protein Cuta1
From Ehrlichia Chaffeensis
Length = 127
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%)
Query: 12 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSL 71
++Y T P E +++ +++ KL AC N I SVY W+ EI + E +I+KT L
Sbjct: 27 LLYTTTPTYEDAYRISNILLENKLIACANIFSNITSVYVWEDEIHNNTECAIILKTTNDL 86
Query: 72 LETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 110
++ T ++A H YD P +I + T + +++W+ T
Sbjct: 87 VQHATNKIQAIHPYDTPAIITIDPTNANDKFIQWVNDCT 125
>pdb|2NUH|A Chain A, Crystal Structure Of Cuta From The Phytopathgen Bacterium
Xylella Fastidiosa
Length = 118
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 57/97 (58%)
Query: 12 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSL 71
+++ T P+ + + ++ +V+ +LAACV ++PG S Y W+G+I+T E L+IKT
Sbjct: 7 LIFSTCPDLPSAEIISRVLVQERLAACVTQLPGAVSTYRWQGKIETTQEIQLLIKTNAVH 66
Query: 72 LETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKS 108
+ + A H Y +PE IA+ ++ G YL W+ +
Sbjct: 67 VNAAITRLCALHPYRLPEAIAVQVSVGLPEYLTWINT 103
>pdb|1VHF|A Chain A, Crystal Structure Of Periplasmic Divalent Cation Tolerance
Protein
Length = 113
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 11 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQS 70
I+VY T PN+E ++ +++ +L AC N I S Y WKGEI D E I KT +
Sbjct: 4 ILVYSTFPNEEKALEIGRKLLEKRLIACFNAFE-IRSGYWWKGEIVQDKEWAAIFKTTEE 62
Query: 71 LLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSS 109
+ L E ++ H Y+ P + L + Y WL+ S
Sbjct: 63 KEKELYEELRKLHPYETPAIFTLKVENVLTEYXNWLRES 101
>pdb|1O5J|A Chain A, Crystal Structure Of Periplasmic Divalent Cation Tolerance
Protein (Tm1056) From Thermotoga Maritima At 1.95 A
Resolution
Length = 113
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 11 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQS 70
I+VY T PN+E ++ +++ +L AC N I S Y WKGEI D E I KT +
Sbjct: 14 ILVYSTFPNEEKALEIGRKLLEKRLIACFNAFE-IRSGYWWKGEIVQDKEWAAIFKTTEE 72
Query: 71 LLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSS 109
+ L E ++ H Y+ P + L + Y WL+ S
Sbjct: 73 KEKELYEELRKLHPYETPAIFTLKVENVLTEYXNWLRES 111
>pdb|1KR4|A Chain A, Structure Genomics, Protein Tm1056, Cuta
Length = 125
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 11 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQS 70
I+VY T PN+E ++ +++ +L AC N I S Y WKGEI D E I KT +
Sbjct: 24 ILVYSTFPNEEKALEIGRKLLEKRLIACFNAFE-IRSGYWWKGEIVQDKEWAAIFKTTEE 82
Query: 71 LLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSS 109
+ L E ++ H Y+ P + L + Y WL+ S
Sbjct: 83 KEKELYEELRKLHPYETPAIFTLKVENILTEYXNWLRES 121
>pdb|1DWU|A Chain A, Ribosomal Protein L1
pdb|1DWU|B Chain B, Ribosomal Protein L1
Length = 213
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 52 KGEIQTDAEELLIIKTRQSLLETLTEHVK-----AN-HEYDVPEVIALPITG 97
KG++ AEE+ + RQ LE L ++ K AN H++ + + +P+ G
Sbjct: 65 KGDLAAQAEEMGLTVIRQDELEELGKNKKMAKKIANEHDFFIAQADMMPLVG 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,205,647
Number of Sequences: 62578
Number of extensions: 103927
Number of successful extensions: 196
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 26
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)