Query 033773
Match_columns 112
No_of_seqs 113 out of 833
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10645 divalent-cation toler 100.0 4.7E-49 1E-53 275.9 14.1 110 2-111 3-112 (112)
2 COG1324 CutA Uncharacterized p 100.0 1.6E-48 3.4E-53 269.7 12.5 102 10-111 3-104 (104)
3 PF03091 CutA1: CutA1 divalent 100.0 5.9E-48 1.3E-52 266.3 11.6 102 10-111 1-102 (102)
4 KOG3338 Divalent cation tolera 100.0 5.9E-41 1.3E-45 240.9 3.2 102 11-112 46-147 (153)
5 COG3323 Uncharacterized protei 98.6 1.6E-06 3.6E-11 60.6 10.6 84 10-97 7-106 (109)
6 smart00049 DEP Domain found in 90.9 0.53 1.1E-05 29.6 4.2 24 17-40 36-59 (77)
7 cd04450 DEP_RGS7-like DEP (Dis 85.9 0.87 1.9E-05 30.0 2.8 27 16-42 43-69 (88)
8 PF00610 DEP: Domain found in 80.6 1.6 3.5E-05 27.1 2.3 26 17-42 35-60 (74)
9 COG4259 Uncharacterized protei 79.9 0.45 9.8E-06 33.6 -0.5 57 25-84 9-65 (121)
10 PF12461 DUF3688: Protein of u 75.8 1.7 3.6E-05 29.4 1.4 13 44-56 59-71 (91)
11 cd04371 DEP DEP domain, named 71.9 5 0.00011 25.1 2.8 24 17-40 44-67 (81)
12 cd04439 DEP_1_P-Rex DEP (Dishe 70.7 4.8 0.0001 26.4 2.6 26 16-41 43-68 (81)
13 cd04436 DEP_fRgd2 DEP (Disheve 69.2 5.7 0.00012 26.6 2.7 20 17-36 45-64 (84)
14 cd04449 DEP_DEPDC5-like DEP (D 68.8 5.5 0.00012 26.0 2.6 24 17-40 46-69 (83)
15 cd04441 DEP_2_DEP6 DEP (Dishev 67.8 6.2 0.00013 26.3 2.7 24 17-40 48-71 (85)
16 cd04438 DEP_dishevelled DEP (D 66.9 6.4 0.00014 26.0 2.6 24 17-40 46-69 (84)
17 cd04442 DEP_1_DEP6 DEP (Dishev 65.5 7.6 0.00016 25.7 2.8 23 17-39 44-66 (82)
18 cd04443 DEP_GPR155 DEP (Dishev 65.0 7.4 0.00016 25.7 2.6 24 17-40 46-69 (83)
19 cd04448 DEP_PIKfyve DEP (Dishe 64.5 7.8 0.00017 25.3 2.7 23 17-39 44-66 (81)
20 cd04444 DEP_PLEK2 DEP (Disheve 63.9 6 0.00013 27.8 2.1 26 16-41 46-71 (109)
21 cd04440 DEP_2_P-Rex DEP (Dishe 61.7 9.4 0.0002 26.0 2.7 25 16-40 52-76 (93)
22 PF14120 YhzD: YhzD-like prote 59.8 11 0.00024 23.9 2.6 20 15-34 21-40 (61)
23 cd04437 DEP_Epac DEP (Dishevel 56.8 32 0.00069 24.5 4.9 67 17-85 47-116 (125)
24 PRK14751 tetracycline resistan 52.2 9.5 0.00021 20.4 1.2 14 39-52 8-21 (28)
25 PF03802 CitX: Apo-citrate lya 50.9 14 0.00031 27.3 2.4 32 54-85 76-107 (170)
26 PF14004 DUF4227: Protein of u 48.8 10 0.00022 24.6 1.2 26 75-100 27-52 (71)
27 PF13151 DUF3990: Protein of u 44.3 78 0.0017 23.0 5.4 80 12-107 27-115 (154)
28 PF09961 DUF2195: Uncharacteri 43.5 6.2 0.00013 28.2 -0.5 36 26-71 17-52 (121)
29 PF02629 CoA_binding: CoA bind 39.3 86 0.0019 20.3 4.6 29 14-43 67-95 (96)
30 cd01917 ACS_2 Acetyl-CoA synth 39.2 60 0.0013 26.4 4.4 31 10-40 130-160 (287)
31 cd04446 DEP_DEPDC4 DEP (Dishev 38.5 36 0.00077 23.2 2.6 23 17-39 51-73 (95)
32 cd07998 WGR_DNA_ligase WGR dom 38.3 28 0.00061 22.9 2.0 21 16-36 49-69 (77)
33 cd07996 WGR_MMR_like WGR domai 36.3 42 0.00091 20.7 2.6 22 14-35 46-67 (74)
34 PF02863 Arg_repressor_C: Argi 35.4 84 0.0018 19.6 3.9 32 59-93 12-43 (70)
35 cd06229 M14_Endopeptidase_I Pe 35.0 1.8E+02 0.004 22.3 6.5 76 19-109 147-222 (255)
36 KOG1250 Threonine/serine dehyd 34.9 40 0.00086 29.0 2.9 77 11-91 161-247 (457)
37 KOG0333 U5 snRNP-like RNA heli 34.0 2.7E+02 0.0059 25.1 7.9 74 13-98 456-529 (673)
38 PF11443 DUF2828: Domain of un 33.6 48 0.001 29.1 3.3 32 68-100 459-490 (534)
39 PRK04923 ribose-phosphate pyro 33.6 2.6E+02 0.0056 22.6 8.4 83 7-90 3-88 (319)
40 PF03736 EPTP: EPTP domain; I 33.5 37 0.00079 19.2 1.8 9 45-53 36-44 (44)
41 PF04475 DUF555: Protein of un 33.2 49 0.0011 23.0 2.6 20 16-35 79-98 (102)
42 COG2344 AT-rich DNA-binding pr 32.1 94 0.002 24.2 4.3 33 10-43 147-179 (211)
43 PRK10343 RNA-binding protein Y 31.6 1E+02 0.0022 21.0 4.0 38 15-52 51-88 (97)
44 TIGR03735 PRTRC_A PRTRC system 30.9 74 0.0016 24.3 3.6 42 51-94 60-102 (192)
45 PF13793 Pribosyltran_N: N-ter 30.7 1.8E+02 0.0039 20.0 7.6 81 12-93 2-85 (116)
46 KOG1478 3-keto sterol reductas 30.3 2.4E+02 0.0052 23.3 6.5 64 10-95 3-68 (341)
47 PRK08057 cobalt-precorrin-6x r 30.2 1.8E+02 0.004 22.6 5.8 60 10-82 4-64 (248)
48 PF10740 DUF2529: Protein of u 29.4 80 0.0017 23.8 3.5 32 5-36 79-110 (172)
49 PF08076 TetM_leader: Tetracyc 29.3 29 0.00062 18.6 0.8 13 40-52 9-21 (28)
50 PRK05412 putative nucleotide-b 29.1 1.9E+02 0.0041 21.6 5.4 55 17-88 99-153 (161)
51 COG1522 Lrp Transcriptional re 29.1 1.9E+02 0.0041 19.7 7.2 54 11-79 70-124 (154)
52 PRK03922 hypothetical protein; 29.0 60 0.0013 23.0 2.5 21 15-35 80-100 (113)
53 PF04461 DUF520: Protein of un 26.8 1.9E+02 0.0041 21.6 5.1 57 16-89 98-154 (160)
54 PF14207 DpnD-PcfM: DpnD/PcfM- 26.3 1.4E+02 0.003 17.8 3.5 23 11-33 12-34 (48)
55 PRK09529 bifunctional acetyl-C 26.3 1.1E+02 0.0024 27.9 4.3 31 10-40 138-168 (711)
56 PHA02102 hypothetical protein 25.7 36 0.00078 22.0 0.9 27 79-111 24-51 (72)
57 PF05036 SPOR: Sporulation rel 25.5 60 0.0013 19.2 1.9 21 11-31 45-65 (76)
58 PRK05783 hypothetical protein; 25.4 1.5E+02 0.0032 19.6 3.9 27 10-36 43-70 (84)
59 PF05406 WGR: WGR domain; Int 25.3 70 0.0015 20.3 2.2 22 14-35 49-70 (81)
60 TIGR00869 sec62 protein transl 25.3 56 0.0012 25.8 2.1 31 13-43 46-76 (232)
61 PRK01392 citX 2'-(5''-triphosp 25.1 33 0.00071 25.8 0.7 32 54-85 80-111 (180)
62 COG1885 Uncharacterized protei 25.1 76 0.0017 22.4 2.5 22 15-36 80-101 (115)
63 PF09954 DUF2188: Uncharacteri 24.6 81 0.0017 19.0 2.3 21 14-34 22-42 (62)
64 PF09391 DUF2000: Protein of u 24.4 2E+02 0.0042 20.5 4.6 43 62-107 56-98 (133)
65 PRK00745 4-oxalocrotonate taut 23.5 1.6E+02 0.0036 17.1 4.0 25 8-32 1-26 (62)
66 PF15645 Tox-PLDMTX: Dermonecr 23.5 2.5E+02 0.0055 20.2 5.1 45 20-69 8-52 (135)
67 cd04087 PTPA Phosphotyrosyl ph 23.4 1.1E+02 0.0025 24.5 3.5 38 65-108 28-65 (266)
68 PF06348 DUF1059: Protein of u 23.3 94 0.002 18.8 2.5 34 53-86 7-40 (57)
69 PF01037 AsnC_trans_reg: AsnC 23.3 1.3E+02 0.0028 17.7 3.2 34 63-101 1-36 (74)
70 PF01115 F_actin_cap_B: F-acti 22.8 68 0.0015 25.4 2.1 26 42-67 114-139 (242)
71 TIGR01006 polys_exp_MPA1 polys 22.7 1.7E+02 0.0037 21.7 4.3 24 9-32 119-142 (226)
72 COG2049 DUR1 Allophanate hydro 22.4 1.1E+02 0.0024 24.0 3.2 76 16-98 18-93 (223)
73 TIGR01719 euk_UDPppase uridine 21.9 1.4E+02 0.0031 23.6 3.9 35 12-46 32-66 (287)
74 PF14280 DUF4365: Domain of un 21.9 99 0.0021 20.9 2.6 77 26-102 3-98 (138)
75 cd04445 DEP_PLEK1 DEP (Disheve 21.6 87 0.0019 21.7 2.2 20 17-36 47-66 (99)
76 PRK06552 keto-hydroxyglutarate 21.2 1.7E+02 0.0036 22.3 3.9 26 10-35 14-39 (213)
77 COG0800 Eda 2-keto-3-deoxy-6-p 21.2 1.5E+02 0.0033 23.0 3.7 26 11-36 15-40 (211)
78 PRK00441 argR arginine repress 21.1 1.8E+02 0.0039 21.0 4.0 33 58-93 88-120 (149)
79 PF13241 NAD_binding_7: Putati 21.0 1.9E+02 0.0041 18.9 3.8 35 10-44 61-95 (103)
80 TIGR01529 argR_whole arginine 20.9 1.9E+02 0.004 20.7 4.0 33 58-93 86-118 (146)
81 PF13893 RRM_5: RNA recognitio 20.9 1.6E+02 0.0034 16.6 3.1 25 11-35 22-46 (56)
82 PRK11178 uridine phosphorylase 20.9 2.1E+02 0.0046 22.1 4.6 72 13-93 19-90 (251)
83 KOG3174 F-actin capping protei 20.7 1E+02 0.0022 24.8 2.7 30 41-70 112-141 (275)
84 cd07122 ALDH_F20_ACDH Coenzyme 20.3 2E+02 0.0044 24.2 4.6 31 10-40 332-365 (436)
85 PLN02383 aspartate semialdehyd 20.3 1.1E+02 0.0024 25.0 3.0 36 12-53 72-107 (344)
86 PF06174 DUF987: Protein of un 20.2 76 0.0016 20.3 1.6 33 19-57 5-37 (66)
No 1
>PRK10645 divalent-cation tolerance protein CutA; Provisional
Probab=100.00 E-value=4.7e-49 Score=275.89 Aligned_cols=110 Identities=36% Similarity=0.718 Sum_probs=105.4
Q ss_pred CCCCCCCCeEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccccHHHHHHHHHh
Q 033773 2 EGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKA 81 (112)
Q Consensus 2 ~~~~~~~~~~~v~tT~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~I~~ 81 (112)
.++|++..+++|+||+||.++|++||+.||++|||||+|++|+|+|+|+|+|++++++|+.|++||+.+++++|+++|++
T Consensus 3 ~~~~~~~~~~lV~tT~p~~e~A~~ia~~Lve~rLaACvni~p~i~S~Y~W~G~i~~~~E~~l~iKT~~~~~~~l~~~I~~ 82 (112)
T PRK10645 3 DEKSSNTDAVVVLCTAPDEATAQDLAAKVLAEKLAACVTLLPGATSLYYWEGKLEQEYEVQMLLKTTVSHQQALLECLKS 82 (112)
T ss_pred cccCCCCCEEEEEEeCCCHHHHHHHHHHHHHCCeeEEEecCCCeeEEEEECCEEeeeeEEEEEEEeCHHHHHHHHHHHHH
Confidence 35677667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcceEEEEecCCCCHhHHHHHHhhcC
Q 033773 82 NHEYDVPEVIALPITGGSQPYLEWLKSSTR 111 (112)
Q Consensus 82 ~HpYe~PeIi~~~i~~~~~~Yl~Wi~~~~~ 111 (112)
+||||+|||+++|+.+|+++|++|+.++++
T Consensus 83 ~HpYevPeIi~~~i~~g~~~Yl~Wi~~~~~ 112 (112)
T PRK10645 83 HHPYQTPELLVLPVTHGDTDYLSWLNASLR 112 (112)
T ss_pred hCCCCCCEEEEEEcccCCHHHHHHHHHhcC
Confidence 999999999999999999999999999874
No 2
>COG1324 CutA Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-48 Score=269.66 Aligned_cols=102 Identities=45% Similarity=0.867 Sum_probs=100.2
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccccHHHHHHHHHhhCCCCcce
Q 033773 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPE 89 (112)
Q Consensus 10 ~~~v~tT~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~I~~~HpYe~Pe 89 (112)
+++|+||+||.++|++|||.||++|||||||++|+|+|+|||+|+|+++.|+.|++||+.+++++|.++|+++|||++||
T Consensus 3 ~~~Vl~T~pd~e~Ae~iar~lleerLaACvni~p~i~S~Y~W~G~Iee~~E~~liiKT~~~~~~~l~~~ikelHpYevPe 82 (104)
T COG1324 3 MVLVLTTAPDEESAERIARKLLEERLAACVNIIPGIKSIYWWEGKIEEDEEVALIIKTTSEKFEELIERIKELHPYEVPE 82 (104)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHhhhheecccCccEEEEECCeeeecceeEEEEEehHHhHHHHHHHHHHhCCCCCce
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHHHhhcC
Q 033773 90 VIALPITGGSQPYLEWLKSSTR 111 (112)
Q Consensus 90 Ii~~~i~~~~~~Yl~Wi~~~~~ 111 (112)
|+++|++.|+++|++|++++++
T Consensus 83 Ii~i~v~~g~~eYL~Wl~~~~~ 104 (104)
T COG1324 83 IIALPVDNGLPEYLEWLNEETK 104 (104)
T ss_pred EEEEEeccCCHHHHHHHHHhcC
Confidence 9999999999999999999874
No 3
>PF03091 CutA1: CutA1 divalent ion tolerance protein; InterPro: IPR004323 The CutA family of proteins which exhibit ion tolerance are found in a large variety of species []. In E.Coli, two operons on the cutA locus contain genes that encode three proteins, CutA1, CutA2 and CutA3. CutA1 proteins are found in the cytoplasm while CutA2 (50kDa) and CutA3 (24kDa) are located in the inner membrane. Although the role of E. Coli CutA1 is not clear, studies on E. coli cutA locus describe some mutations that lead to an increase in copper sensitivity, thus suggesting a role in ion tolerance []. To date, the structure of CutA proteins from several species have been solved [, ]. The crystal structures of the E.Coli and rat CutA1 proteins show both these proteins to be trimeric in the crystal as well as in solution[].Trimerisation seems to supported by the formation of beta sheets between the subunit. This trimeric structure suggests the protein may be involved in signal transduction due to architectural similarities with PII signal transducer proteins []. Recent studies propose that mammalian CutA1 in the neuronal cell membrane acts as an anchor for acetylcholinesterase (AChE)1 [].; GO: 0010038 response to metal ion; PDB: 1O5J_A 1KR4_A 1VHF_A 3GSD_H 1OSC_A 3OPK_A 4E98_C 1V9B_F 1UKU_A 2E66_C ....
Probab=100.00 E-value=5.9e-48 Score=266.26 Aligned_cols=102 Identities=45% Similarity=0.904 Sum_probs=96.5
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccccHHHHHHHHHhhCCCCcce
Q 033773 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPE 89 (112)
Q Consensus 10 ~~~v~tT~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~I~~~HpYe~Pe 89 (112)
+++|+||+||+++|++|||.||++|||||+|++|+|+|+|+|+|+|++++|++|++||+.+++++|.++|+++||||+||
T Consensus 1 ~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~i~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~i~~~HpYe~Pe 80 (102)
T PF03091_consen 1 MILVYTTCPDREEAERIARALVEERLAACVNIIPPITSIYRWEGKIEEEEEVLLLIKTTASRFDELEERIRELHPYEVPE 80 (102)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTS-SEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHSSSSS--
T ss_pred CEEEEEEcCCHHHHHHHHHHHHhCCeEEEEEecCCceeEEEECCccccceEeeEEEEecHHHHHHHHHHHHHhCCCCCCE
Confidence 58999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHhHHHHHHhhcC
Q 033773 90 VIALPITGGSQPYLEWLKSSTR 111 (112)
Q Consensus 90 Ii~~~i~~~~~~Yl~Wi~~~~~ 111 (112)
|+++|+.+|+++|++|+.++++
T Consensus 81 Ii~~~i~~~~~~Yl~Wi~~~~~ 102 (102)
T PF03091_consen 81 IIALPIDKGNPAYLEWINEETK 102 (102)
T ss_dssp EEEEEESEEEHHHHHHHHHHT-
T ss_pred EEEEEccccCHHHHHHHHHhcC
Confidence 9999999999999999999874
No 4
>KOG3338 consensus Divalent cation tolerance-related protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-41 Score=240.85 Aligned_cols=102 Identities=61% Similarity=0.980 Sum_probs=99.6
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccccHHHHHHHHHhhCCCCcceE
Q 033773 11 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEV 90 (112)
Q Consensus 11 ~~v~tT~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~I~~~HpYe~PeI 90 (112)
.++|+|+||+|.|+++||.+|++|||||+|++|+|+|+|.|+|+|++|.|+.|++||+.+++..|.+++++.|||||||+
T Consensus 46 Sva~VT~P~rE~a~~~arsiV~~rLAACvNiIpeItSIY~WkgkI~edsE~ll~iKtrsSl~~~Lt~fV~~nHpYeVpEV 125 (153)
T KOG3338|consen 46 SVAYVTAPNREVAKELARSIVEERLAACVNIIPEITSIYEWKGKIVEDSEYLLIIKTRSSLHWPLTKFVRGNHPYEVPEV 125 (153)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHHHHHhhcccceehhhhhcccccchhHHHHHHHhhhhhhhHHHHHhcCCCccchhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHhHHHHHHhhcCC
Q 033773 91 IALPITGGSQPYLEWLKSSTRD 112 (112)
Q Consensus 91 i~~~i~~~~~~Yl~Wi~~~~~~ 112 (112)
|++|+..|+.+||+|+++.+.+
T Consensus 126 ialpi~~gs~~YLeW~~q~v~~ 147 (153)
T KOG3338|consen 126 IALPIHLGSRPYLEWMNQCVDD 147 (153)
T ss_pred eeeccccCCcHHHHHHHHhccc
Confidence 9999999999999999998753
No 5
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.55 E-value=1.6e-06 Score=60.62 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=69.1
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccc------eEeecCCceEEEee----------CCeeccCceEEEEEEeccccHH
Q 033773 10 SIVVYVTVPNKEAGKKLAESIVKAKLAA------CVNRVPGIESVYEW----------KGEIQTDAEELLIIKTRQSLLE 73 (112)
Q Consensus 10 ~~~v~tT~ps~e~A~~ia~~lve~rLaA------Cvni~~~v~S~Y~W----------~g~i~~~~E~~l~~KT~~~~~~ 73 (112)
.+.||+. ++..+.+-.+|-+.++.. |+-... ++.-|+- .|+++...|+++.+........
T Consensus 7 K~~vyVP---~~~~e~vr~aL~~aGag~iG~Y~~C~~~~~-g~G~frP~egAnP~iGevgk~e~v~E~kiE~v~~~~~~~ 82 (109)
T COG3323 7 KIEVYVP---EEYVEQVRDALFEAGAGHIGNYDHCTFSSE-GTGQFRPLEGANPFIGEVGKLEFVAEVKIEFVVPAELRA 82 (109)
T ss_pred EEEEEeC---HHHHHHHHHHHHhcCCcceeccceEEEEee-eeEEEeecCCCCCcccccceEEeeeeeEEEEEcCHHHHH
Confidence 4666664 566888999999999876 443332 4555555 4999999999999999999999
Q ss_pred HHHHHHHhhCCCCcceEEEEecCC
Q 033773 74 TLTEHVKANHEYDVPEVIALPITG 97 (112)
Q Consensus 74 ~l~~~I~~~HpYe~PeIi~~~i~~ 97 (112)
++.+.|++.||||.|.|-.+|+..
T Consensus 83 ~v~~~ik~aHPYEePa~di~~l~~ 106 (109)
T COG3323 83 AVLSAIKKAHPYEEPAIDVIPLLN 106 (109)
T ss_pred HHHHHHHHhCCCCCcceEEEEccc
Confidence 999999999999999999999875
No 6
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=90.90 E-value=0.53 Score=29.62 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHhccccceEe
Q 033773 17 VPNKEAGKKLAESIVKAKLAACVN 40 (112)
Q Consensus 17 ~ps~e~A~~ia~~lve~rLaACvn 40 (112)
+.|+++|.++++.|++.|+.-.++
T Consensus 36 ~~~r~eA~~l~~~ll~~g~i~~v~ 59 (77)
T smart00049 36 IIDREEAVHLGQLLLDEGLIHHVN 59 (77)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEeC
Confidence 578999999999999999999887
No 7
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=85.93 E-value=0.87 Score=30.03 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=24.4
Q ss_pred eCCCHHHHHHHHHHHHhccccceEeec
Q 033773 16 TVPNKEAGKKLAESIVKAKLAACVNRV 42 (112)
Q Consensus 16 T~ps~e~A~~ia~~lve~rLaACvni~ 42 (112)
+..|+++|..+|..|++.+|+.+|+-.
T Consensus 43 ~~~~~~EA~~~~~~ll~~gli~~V~~~ 69 (88)
T cd04450 43 DVVDPSEALEIAALFVKYGLITPVSDH 69 (88)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 458999999999999999999999864
No 8
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=80.64 E-value=1.6 Score=27.13 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHhccccceEeec
Q 033773 17 VPNKEAGKKLAESIVKAKLAACVNRV 42 (112)
Q Consensus 17 ~ps~e~A~~ia~~lve~rLaACvni~ 42 (112)
+.|+++|..+++.|++.++..-++-.
T Consensus 35 ~~~r~eA~~l~q~Ll~~g~i~~v~~~ 60 (74)
T PF00610_consen 35 VRDREEAVQLGQELLDHGFIEHVSDK 60 (74)
T ss_dssp TSSHHHHHHHHHHHHHCTSEEESSSS
T ss_pred ccCHHHHHHHHHHHHHCCCEEECCCC
Confidence 68999999999999999999888643
No 9
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.85 E-value=0.45 Score=33.62 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=35.3
Q ss_pred HHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccccHHHHHHHHHhhCC
Q 033773 25 KLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHE 84 (112)
Q Consensus 25 ~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~I~~~Hp 84 (112)
|+|-.+--.-||+|+. -| +|+|.|+|-..+--|..=-=-|......++++-+.+.-.
T Consensus 9 r~al~~av~~LagC~~-gp--KslY~w~gYq~tvyEy~K~~es~e~Q~~~le~~~ek~~a 65 (121)
T COG4259 9 RLALLLAVAALAGCGG-GP--KSLYQWEGYQDTVYEYFKGDESKEAQTAALEKYLEKIGA 65 (121)
T ss_pred HHHHHHHHHHHHHccC-CC--ccccccCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 3443444456899997 34 999999997766666532222344556666666665543
No 10
>PF12461 DUF3688: Protein of unknown function (DUF3688) ; InterPro: IPR022160 This entry is represented by Spiroplasma phage 1-C74, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This domain family is found in bacteria and viruses, and is typically between 79 and 104 amino acids in length. There is a conserved YRW sequence motif. There is a single completely conserved residue Y that may be functionally important.
Probab=75.76 E-value=1.7 Score=29.38 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=10.6
Q ss_pred CceEEEeeCCeec
Q 033773 44 GIESVYEWKGEIQ 56 (112)
Q Consensus 44 ~v~S~Y~W~g~i~ 56 (112)
-..|+|||+|.=|
T Consensus 59 ~fKsvYRWdG~gE 71 (91)
T PF12461_consen 59 YFKSVYRWDGVGE 71 (91)
T ss_pred eEEEEEEecCCCC
Confidence 4799999999744
No 11
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=71.89 E-value=5 Score=25.07 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHhccccceEe
Q 033773 17 VPNKEAGKKLAESIVKAKLAACVN 40 (112)
Q Consensus 17 ~ps~e~A~~ia~~lve~rLaACvn 40 (112)
..|+++|.++++.|++.++...++
T Consensus 44 ~~~r~ea~~~~~~ll~~g~i~~v~ 67 (81)
T cd04371 44 AITREEAVELGQALLKHGLIHHVS 67 (81)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeC
Confidence 479999999999999999998875
No 12
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=70.73 E-value=4.8 Score=26.44 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=22.6
Q ss_pred eCCCHHHHHHHHHHHHhccccceEee
Q 033773 16 TVPNKEAGKKLAESIVKAKLAACVNR 41 (112)
Q Consensus 16 T~ps~e~A~~ia~~lve~rLaACvni 41 (112)
.+.|+++|..+++.|++.++.-.|.-
T Consensus 43 ~~~~r~eAv~lg~~Ll~~G~i~HV~~ 68 (81)
T cd04439 43 EISKPEEGVNLGQALLENGIIHHVSD 68 (81)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 46788999999999999999988753
No 13
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=69.16 E-value=5.7 Score=26.65 Aligned_cols=20 Identities=5% Similarity=0.228 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHhcccc
Q 033773 17 VPNKEAGKKLAESIVKAKLA 36 (112)
Q Consensus 17 ~ps~e~A~~ia~~lve~rLa 36 (112)
.||.+.|+++++.|++.++.
T Consensus 45 ~~s~~~aE~fGQdLv~~gfi 64 (84)
T cd04436 45 EKDLDAAEAFGQDLLNQGFL 64 (84)
T ss_pred CCCHHHHHHHHHHHHhCchH
Confidence 49999999999999999988
No 14
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=68.83 E-value=5.5 Score=25.96 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHhccccceEe
Q 033773 17 VPNKEAGKKLAESIVKAKLAACVN 40 (112)
Q Consensus 17 ~ps~e~A~~ia~~lve~rLaACvn 40 (112)
..|+++|..+++.|+++++...|.
T Consensus 46 ~~~r~eAv~lgq~Ll~~g~I~hv~ 69 (83)
T cd04449 46 VDTREEAVELGQELMNEGLIEHVS 69 (83)
T ss_pred CCCHHHHHHHHHHHHHCCCEEecC
Confidence 578999999999999999987764
No 15
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=67.78 E-value=6.2 Score=26.32 Aligned_cols=24 Identities=8% Similarity=0.242 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHhccccceEe
Q 033773 17 VPNKEAGKKLAESIVKAKLAACVN 40 (112)
Q Consensus 17 ~ps~e~A~~ia~~lve~rLaACvn 40 (112)
+.|+++|..+++.|+++++.-.|.
T Consensus 48 ~~sR~eAv~lgq~Ll~~gii~HV~ 71 (85)
T cd04441 48 AESRREAVQLCRRLLEHGIIQHVS 71 (85)
T ss_pred CCCHHHHHHHHHHHHHCCCEEecC
Confidence 679999999999999999988774
No 16
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=66.91 E-value=6.4 Score=26.00 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHhccccceEe
Q 033773 17 VPNKEAGKKLAESIVKAKLAACVN 40 (112)
Q Consensus 17 ~ps~e~A~~ia~~lve~rLaACvn 40 (112)
..|+++|..+++.|++.++.-.|.
T Consensus 46 ~~~R~eAv~~g~~Ll~~G~i~HV~ 69 (84)
T cd04438 46 LTDRREARKYASSLLKLGYIRHTV 69 (84)
T ss_pred CCCHHHHHHHHHHHHHCCcEEecC
Confidence 468999999999999999987763
No 17
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=65.53 E-value=7.6 Score=25.66 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHhccccceE
Q 033773 17 VPNKEAGKKLAESIVKAKLAACV 39 (112)
Q Consensus 17 ~ps~e~A~~ia~~lve~rLaACv 39 (112)
+.|+++|..+++.|+++++.-.|
T Consensus 44 ~~sR~eAv~lgq~Ll~~gvi~HV 66 (82)
T cd04442 44 ASDRETAIKIMQKLLDHSIIHHV 66 (82)
T ss_pred CCCHHHHHHHHHHHHHCCCEEec
Confidence 57899999999999999999887
No 18
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=65.02 E-value=7.4 Score=25.67 Aligned_cols=24 Identities=0% Similarity=0.135 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHhccccceEe
Q 033773 17 VPNKEAGKKLAESIVKAKLAACVN 40 (112)
Q Consensus 17 ~ps~e~A~~ia~~lve~rLaACvn 40 (112)
+.|+++|..+++.|++.++.-.|.
T Consensus 46 ~~sR~eAv~lg~~Ll~~G~i~HV~ 69 (83)
T cd04443 46 AQDRGEAVLYGRRLLQGGVLQHIT 69 (83)
T ss_pred CCCHHHHHHHHHHHHHCCCEEecC
Confidence 578999999999999999987764
No 19
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=64.46 E-value=7.8 Score=25.30 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHhccccceE
Q 033773 17 VPNKEAGKKLAESIVKAKLAACV 39 (112)
Q Consensus 17 ~ps~e~A~~ia~~lve~rLaACv 39 (112)
+.|+++|..+++.|+++++.--|
T Consensus 44 ~~~R~eAv~~gq~Ll~~g~i~hV 66 (81)
T cd04448 44 AATRVQAIAIGQALLDAGWIECV 66 (81)
T ss_pred CCCHHHHHHHHHHHHHCCCEEec
Confidence 58899999999999999987655
No 20
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=63.89 E-value=6 Score=27.76 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=22.5
Q ss_pred eCCCHHHHHHHHHHHHhccccceEee
Q 033773 16 TVPNKEAGKKLAESIVKAKLAACVNR 41 (112)
Q Consensus 16 T~ps~e~A~~ia~~lve~rLaACvni 41 (112)
+..++++|..||+.|++.+|.=+|..
T Consensus 46 ~~i~R~EAv~l~q~Lmd~gli~hV~~ 71 (109)
T cd04444 46 FAASRLEAVTLASMLMEENFLRPVGV 71 (109)
T ss_pred CCCCHHHHHHHHHHHHhCCchhhHHH
Confidence 34589999999999999999988853
No 21
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=61.68 E-value=9.4 Score=25.95 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=22.4
Q ss_pred eCCCHHHHHHHHHHHHhccccceEe
Q 033773 16 TVPNKEAGKKLAESIVKAKLAACVN 40 (112)
Q Consensus 16 T~ps~e~A~~ia~~lve~rLaACvn 40 (112)
-++|+++|..+++.|++.++.-.|.
T Consensus 52 ~~~tR~eAv~~gq~Ll~~gii~HV~ 76 (93)
T cd04440 52 DCRTREEAVILGVGLCNNGFMHHVL 76 (93)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEecC
Confidence 4679999999999999999988875
No 22
>PF14120 YhzD: YhzD-like protein
Probab=59.83 E-value=11 Score=23.90 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=17.1
Q ss_pred EeCCCHHHHHHHHHHHHhcc
Q 033773 15 VTVPNKEAGKKLAESIVKAK 34 (112)
Q Consensus 15 tT~ps~e~A~~ia~~lve~r 34 (112)
.++.|.++|+++++.+|+++
T Consensus 21 feA~~D~eAK~~G~~~L~Ek 40 (61)
T PF14120_consen 21 FEAANDEEAKEIGEQKLKEK 40 (61)
T ss_pred eecCCHHHHHHHHHHHHHHC
Confidence 46778899999999999875
No 23
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=56.79 E-value=32 Score=24.49 Aligned_cols=67 Identities=9% Similarity=0.087 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHhccccceEee---cCCceEEEeeCCeeccCceEEEEEEeccccHHHHHHHHHhhCCC
Q 033773 17 VPNKEAGKKLAESIVKAKLAACVNR---VPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEY 85 (112)
Q Consensus 17 ~ps~e~A~~ia~~lve~rLaACvni---~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~I~~~HpY 85 (112)
..|+++|..+++.|+++++.-.|.- +..-..+|++.+.-.... .+..+...+-+.+....+.++=|+
T Consensus 47 v~sR~eAv~lgq~Ll~~gvi~HV~~~h~F~D~~~fYrF~~d~~~~~--~~~~~~~eee~~~~v~~l~q~~p~ 116 (125)
T cd04437 47 VQSRSQAVGMWQVLLEEGVLLHVDQELHFQDKYQFYRFSDDECSPA--PLEKREAEEELQEAVTLLSQLGPD 116 (125)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEeCCcCccccCCeeEEECCccCCcc--cchhhhhHHHHHHHHHHHHhhCcH
Confidence 3689999999999999999998753 222246788876522221 114455666677777777777765
No 24
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=52.17 E-value=9.5 Score=20.37 Aligned_cols=14 Identities=29% Similarity=0.878 Sum_probs=10.9
Q ss_pred EeecCCceEEEeeC
Q 033773 39 VNRVPGIESVYEWK 52 (112)
Q Consensus 39 vni~~~v~S~Y~W~ 52 (112)
++..|.=+|+|.|+
T Consensus 8 ~h~~psdksi~hwd 21 (28)
T PRK14751 8 MHKNPSDKSIYHWD 21 (28)
T ss_pred eecCCCcCceeeee
Confidence 45567779999997
No 25
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=50.90 E-value=14 Score=27.33 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=30.0
Q ss_pred eeccCceEEEEEEeccccHHHHHHHHHhhCCC
Q 033773 54 EIQTDAEELLIIKTRQSLLETLTEHVKANHEY 85 (112)
Q Consensus 54 ~i~~~~E~~l~~KT~~~~~~~l~~~I~~~HpY 85 (112)
.-.++.|..++++.....++++.-.|.+.||+
T Consensus 76 ~~~tGpe~~~~v~~~a~~vK~~~i~iEe~hpl 107 (170)
T PF03802_consen 76 NDPTGPEAFLVVDGDAEEVKRIMIEIEESHPL 107 (170)
T ss_pred ecCCcceeeEEeCCCHHHHHHHHHHHHccCcc
Confidence 55789999999999999999999999999997
No 26
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=48.84 E-value=10 Score=24.65 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=19.9
Q ss_pred HHHHHHhhCCCCcceEEEEecCCCCH
Q 033773 75 LTEHVKANHEYDVPEVIALPITGGSQ 100 (112)
Q Consensus 75 l~~~I~~~HpYe~PeIi~~~i~~~~~ 100 (112)
+-+.+...|||+.|+=-++.+.+.+.
T Consensus 27 ~~~~~~~~hrY~eP~G~AVKV~~~~~ 52 (71)
T PF14004_consen 27 VSDEYEPYHRYDEPEGSAVKVFQMEN 52 (71)
T ss_pred HHHHhccCCCCCCCCCceEeeeccCC
Confidence 45678899999999987777765543
No 27
>PF13151 DUF3990: Protein of unknown function (DUF3990)
Probab=44.29 E-value=78 Score=23.00 Aligned_cols=80 Identities=25% Similarity=0.319 Sum_probs=50.8
Q ss_pred EEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccccHHHHHHHHHhh---------
Q 033773 12 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKAN--------- 82 (112)
Q Consensus 12 ~v~tT~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~I~~~--------- 82 (112)
--+=++++.+.|++.|..- -+...++-++|..+...-... |-+|...+.-.+=.++|..+
T Consensus 27 ~GFY~T~~~~qA~~wA~~~--------~~~~~~~v~~Y~~~~~~~~~~---l~~k~F~~~~~eWl~fV~~nR~~~~~~~~ 95 (154)
T PF13151_consen 27 KGFYLTTDKEQAKRWAKRK--------RNGGDPIVNVYEFDEDGLDSD---LKIKIFEKYDEEWLDFVVNNRKGKDSYPY 95 (154)
T ss_pred ceeEcccCHHHHHHHHHhc--------ccCCCCEEEEEEEeccccccc---ccccccCcchHHHHHHHHHhcCCCCCCCC
Confidence 3444567799999999876 444556888898876543322 77777776667777777654
Q ss_pred CCCCcceEEEEecCCCCHhHHHHHH
Q 033773 83 HEYDVPEVIALPITGGSQPYLEWLK 107 (112)
Q Consensus 83 HpYe~PeIi~~~i~~~~~~Yl~Wi~ 107 (112)
|.|| ||.=|+.+ ..+.+.++
T Consensus 96 ~~yD---iV~GpiAD--d~v~~~i~ 115 (154)
T PF13151_consen 96 HDYD---IVIGPIAD--DRVFQTIN 115 (154)
T ss_pred CCCC---EEEecccC--ChHHHHHH
Confidence 7776 34445443 34444443
No 28
>PF09961 DUF2195: Uncharacterized protein conserved in bacteria (DUF2195); InterPro: IPR018696 This family of various bacterial proteins has no known function.
Probab=43.49 E-value=6.2 Score=28.22 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=25.2
Q ss_pred HHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEecccc
Q 033773 26 LAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSL 71 (112)
Q Consensus 26 ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~ 71 (112)
-+..-++++|+||+.+.|+-. +..+-++.+||+-+.
T Consensus 17 ag~i~~~N~LaaCv~~~~~~~----------~~~~n~v~l~~~~~l 52 (121)
T PF09961_consen 17 AGTIQFDNALAACVDVKPGQP----------QTADNQVSLKATFSL 52 (121)
T ss_pred cCceEEeCcHHHHhcCcccCc----------cccCCeEEEEEEEEE
Confidence 334568999999999988533 455667777776543
No 29
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=39.30 E-value=86 Score=20.32 Aligned_cols=29 Identities=38% Similarity=0.621 Sum_probs=22.4
Q ss_pred EEeCCCHHHHHHHHHHHHhccccceEeecC
Q 033773 14 YVTVPNKEAGKKLAESIVKAKLAACVNRVP 43 (112)
Q Consensus 14 ~tT~ps~e~A~~ia~~lve~rLaACvni~~ 43 (112)
..+.|+ +.|++.+..+++.++=+.+|+.|
T Consensus 67 ii~VP~-~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 67 IITVPA-EAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp EEES-H-HHHHHHHHHHHHTT-SEEEEESS
T ss_pred EEEcCH-HHHHHHHHHHHHcCCCEEEEeCC
Confidence 345574 66999999999999999999876
No 30
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=39.22 E-value=60 Score=26.42 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=25.2
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEe
Q 033773 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVN 40 (112)
Q Consensus 10 ~~~v~tT~ps~e~A~~ia~~lve~rLaACvn 40 (112)
.+++.=..|+.++|.+|++.+.++++..+..
T Consensus 130 va~ivG~a~~~e~~~~I~~e~q~r~~lv~l~ 160 (287)
T cd01917 130 EAVILGRAKDSKALKKIVDDLMGRGFMLFLC 160 (287)
T ss_pred EEEEEecCCChHHHHHHHHHHHHCCcEEEEe
Confidence 4455555668999999999999999998773
No 31
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=38.54 E-value=36 Score=23.17 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHhccccceE
Q 033773 17 VPNKEAGKKLAESIVKAKLAACV 39 (112)
Q Consensus 17 ~ps~e~A~~ia~~lve~rLaACv 39 (112)
..|+++|.++++.|+++++.-.|
T Consensus 51 ~~tR~~Av~l~q~Ll~~gvi~~V 73 (95)
T cd04446 51 DVPRAKAVRLCQALMDCRVFEAV 73 (95)
T ss_pred cCCHHHHHHHHHHHHHcCCeeec
Confidence 34899999999999999998777
No 32
>cd07998 WGR_DNA_ligase WGR domain of bacterial DNA ligases. The WGR domain is found in a small family of predicted bacterial DNA ligases. It has been called WGR after the most conserved central motif of the domain. The domain typically occurs in together with an ATP-dependent DNA ligase domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=38.30 E-value=28 Score=22.88 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=17.7
Q ss_pred eCCCHHHHHHHHHHHHhcccc
Q 033773 16 TVPNKEAGKKLAESIVKAKLA 36 (112)
Q Consensus 16 T~ps~e~A~~ia~~lve~rLa 36 (112)
++++.+.|++++..||.+|+-
T Consensus 49 ~~~~~~~A~k~~~Klv~eK~~ 69 (77)
T cd07998 49 APVTLEAAEKIFDKLVKSKTN 69 (77)
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 346899999999999998863
No 33
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=36.29 E-value=42 Score=20.74 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEeCCCHHHHHHHHHHHHhccc
Q 033773 14 YVTVPNKEAGKKLAESIVKAKL 35 (112)
Q Consensus 14 ~tT~ps~e~A~~ia~~lve~rL 35 (112)
...++|.++|.+....++.+|+
T Consensus 46 ~~~~~s~~~A~~~~~k~~~~K~ 67 (74)
T cd07996 46 TKTFDSEEEALKAAEKLIREKL 67 (74)
T ss_pred EEECCCHHHHHHHHHHHHHHHH
Confidence 3568999999999999998875
No 34
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=35.41 E-value=84 Score=19.61 Aligned_cols=32 Identities=16% Similarity=0.404 Sum_probs=26.6
Q ss_pred ceEEEEEEeccccHHHHHHHHHhhCCCCcceEEEE
Q 033773 59 AEELLIIKTRQSLLETLTEHVKANHEYDVPEVIAL 93 (112)
Q Consensus 59 ~E~~l~~KT~~~~~~~l~~~I~~~HpYe~PeIi~~ 93 (112)
.+..+++||.+..-+.+...|-+. ..|+|++.
T Consensus 12 ~~~~vvikt~pG~A~~va~~iD~~---~~~~I~Gt 43 (70)
T PF02863_consen 12 SDNMVVIKTLPGNAQAVAAAIDQL---NLPEIFGT 43 (70)
T ss_dssp ESSEEEEEESTTCHHHHHHHHHHH---CGTTEEEE
T ss_pred cCCEEEEEeCCCcHHHHHHHHHhc---CCcccEEE
Confidence 456899999999999999999888 46777654
No 35
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=34.98 E-value=1.8e+02 Score=22.33 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccccHHHHHHHHHhhCCCCcceEEEEecCCC
Q 033773 19 NKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGG 98 (112)
Q Consensus 19 s~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~I~~~HpYe~PeIi~~~i~~~ 98 (112)
|+-|++.|.+.+.+.+..+++++...-..+|+-=+. ... ....++.+.+.+.|.|.+-.... ...
T Consensus 147 SEpEtral~~~~~~~~~~~~i~~Hs~g~~i~~~~~~--~~~----------~~~~~~~~~~~~~~gy~~~~~~~---~~~ 211 (255)
T cd06229 147 SEPETIALAELTRENRFRAVLAYHSQGEEIYWGYGG--LEP----------PESQKMAELLAEVSGYELVDSES---KRS 211 (255)
T ss_pred CchhHHHHHHHHHhCCCeEEEEecCCCCeEEecCCC--CCc----------hHHHHHHHHHhhccCCccccccc---cCC
Confidence 667899999999999999999998877777633332 111 45678999999999997654333 234
Q ss_pred CHhHHHHHHhh
Q 033773 99 SQPYLEWLKSS 109 (112)
Q Consensus 99 ~~~Yl~Wi~~~ 109 (112)
+..+.+|..+.
T Consensus 212 ~G~~~Dw~~~~ 222 (255)
T cd06229 212 YGGYKDWFIQK 222 (255)
T ss_pred CCCHHHHHHhh
Confidence 45677887654
No 36
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=34.91 E-value=40 Score=29.03 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=63.2
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEecc----------ccHHHHHHHHH
Q 033773 11 IVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQ----------SLLETLTEHVK 80 (112)
Q Consensus 11 ~~v~tT~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~----------~~~~~l~~~I~ 80 (112)
.-|...-.|.++|+.+|..+.+++ .=.+| ||-.--|.|.|.=.-..|+.=.+|+.. .++.-+...++
T Consensus 161 A~Vil~G~~~deAk~~a~~lAke~--gl~yI-~pfDhP~I~aGqgTig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk 237 (457)
T KOG1250|consen 161 ATVILSGEDWDEAKAFAKRLAKEN--GLTYI-PPFDHPDIWAGQGTIGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVK 237 (457)
T ss_pred CEEEEecccHHHHHHHHHHHHHhc--Cceec-CCCCCchhhcCcchHHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHH
Confidence 356778889999999999999998 55665 558999999999888888888888876 57788888899
Q ss_pred hhCCCCcceEE
Q 033773 81 ANHEYDVPEVI 91 (112)
Q Consensus 81 ~~HpYe~PeIi 91 (112)
+.-| .+|-|=
T Consensus 238 ~~~p-~vkIIG 247 (457)
T KOG1250|consen 238 RVGP-HVKIIG 247 (457)
T ss_pred HhCC-CCceEE
Confidence 9988 676443
No 37
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=34.02 E-value=2.7e+02 Score=25.13 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=55.1
Q ss_pred EEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccccHHHHHHHHHhhCCCCcceEEE
Q 033773 13 VYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIA 92 (112)
Q Consensus 13 v~tT~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~I~~~HpYe~PeIi~ 92 (112)
+..|+.=.-.+++||+..+++=..+-.+. -|+=+.--|-.+.+=+.++++++|.+.+.+. ++-|.||+
T Consensus 456 ~mftatm~p~verlar~ylr~pv~vtig~----------~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIF 523 (673)
T KOG0333|consen 456 VMFTATMPPAVERLARSYLRRPVVVTIGS----------AGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIF 523 (673)
T ss_pred EEEecCCChHHHHHHHHHhhCCeEEEecc----------CCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEE
Confidence 44444445679999999998765554443 3444555677788888889999999999988 89999999
Q ss_pred EecCCC
Q 033773 93 LPITGG 98 (112)
Q Consensus 93 ~~i~~~ 98 (112)
+.-.++
T Consensus 524 vN~kk~ 529 (673)
T KOG0333|consen 524 VNTKKG 529 (673)
T ss_pred Eechhh
Confidence 986654
No 38
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=33.59 E-value=48 Score=29.11 Aligned_cols=32 Identities=19% Similarity=0.465 Sum_probs=25.5
Q ss_pred ccccHHHHHHHHHhhCCCCcceEEEEecCCCCH
Q 033773 68 RQSLLETLTEHVKANHEYDVPEVIALPITGGSQ 100 (112)
Q Consensus 68 ~~~~~~~l~~~I~~~HpYe~PeIi~~~i~~~~~ 100 (112)
-...++.+.+.- +.|-|++|+|+.+.+...+.
T Consensus 459 w~T~~e~i~~~f-~~aGY~~P~iVFWNl~~~~~ 490 (534)
T PF11443_consen 459 WETNFEAIKRKF-EEAGYELPEIVFWNLRGRSS 490 (534)
T ss_pred cccHHHHHHHHH-HHhCCCCCceEEeecCCCCC
Confidence 346678888877 67999999999999876554
No 39
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=33.55 E-value=2.6e+02 Score=22.64 Aligned_cols=83 Identities=18% Similarity=0.133 Sum_probs=52.4
Q ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEec---cccHHHHHHHHHhhC
Q 033773 7 TVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTR---QSLLETLTEHVKANH 83 (112)
Q Consensus 7 ~~~~~~v~tT~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~---~~~~~~l~~~I~~~H 83 (112)
++.-.+|+..-.+.+-|++||+.|=-.---.....+|.-+...+=.+.+ .++++.++--+. .+++=+|.-.+..+-
T Consensus 3 ~~~~~~i~~g~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v-~g~~V~iiqs~~~p~nd~lmeLl~~~~alr 81 (319)
T PRK04923 3 DQRNLLVFSGNANKPLAQSICKELGVRMGKALVTRFSDGEVQVEIEESV-RRQEVFVIQPTCAPSAENLMELLVLIDALK 81 (319)
T ss_pred CCCceEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCc-CCCeEEEEecCCCCCchHHHHHHHHHHHHH
Confidence 3334678888888999999999985555556677788778777777776 356665554332 344444444444443
Q ss_pred CCCcceE
Q 033773 84 EYDVPEV 90 (112)
Q Consensus 84 pYe~PeI 90 (112)
-.-.-.|
T Consensus 82 ~~~a~~i 88 (319)
T PRK04923 82 RASAASV 88 (319)
T ss_pred HcCCcEE
Confidence 3333333
No 40
>PF03736 EPTP: EPTP domain; InterPro: IPR005492 Mutations in the LGI/EPT gene can result in a special form of epilepsy, autosomal dominant lateral temporal epilepsy. The Epitempin protein (also known as Leucine-rich glioma-inactivated protein) was seen to contain a 130 amino acid repeat in its C-terminal section, although a sub-domain of 50 amino acids has now been further defined within this. The architecture and structural features of this repeat make it a likely member 7-bladed beta-propeller fold []. This protein has now been found in a number of proteins associated with neurological disorders suggesting that it may play a role in the development of epilepsy and other related conditions [].
Probab=33.53 E-value=37 Score=19.24 Aligned_cols=9 Identities=33% Similarity=1.080 Sum_probs=7.4
Q ss_pred ceEEEeeCC
Q 033773 45 IESVYEWKG 53 (112)
Q Consensus 45 v~S~Y~W~g 53 (112)
-..+|+|+|
T Consensus 36 ~s~Iy~Wd~ 44 (44)
T PF03736_consen 36 DSQIYRWDG 44 (44)
T ss_pred CCEEEEeCC
Confidence 567999987
No 41
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=33.23 E-value=49 Score=23.00 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=17.5
Q ss_pred eCCCHHHHHHHHHHHHhccc
Q 033773 16 TVPNKEAGKKLAESIVKAKL 35 (112)
Q Consensus 16 T~ps~e~A~~ia~~lve~rL 35 (112)
...|.|.|.|||+.-+-++|
T Consensus 79 nAes~EHA~RIAKs~iGkaL 98 (102)
T PF04475_consen 79 NAESEEHAERIAKSEIGKAL 98 (102)
T ss_pred ecCCHHHHHHHHHHHHhHHh
Confidence 46899999999999988776
No 42
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=32.10 E-value=94 Score=24.22 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=28.3
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEeecC
Q 033773 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVP 43 (112)
Q Consensus 10 ~~~v~tT~ps~e~A~~ia~~lve~rLaACvni~~ 43 (112)
.-+...|.|+ +.|+++|..||+.+.=+--|..|
T Consensus 147 v~iaiLtVPa-~~AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 147 VEIAILTVPA-EHAQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred ccEEEEEccH-HHHHHHHHHHHHcCCceEEeccc
Confidence 3466778884 78999999999999999999887
No 43
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=31.63 E-value=1e+02 Score=21.01 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=32.4
Q ss_pred EeCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeC
Q 033773 15 VTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWK 52 (112)
Q Consensus 15 tT~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~ 52 (112)
+--.+.++.+.++..+-++-=|.+||+++.+--+|+-.
T Consensus 51 v~~~~~~~~~e~~~~i~~~~~ae~Vq~IG~~~vlYR~~ 88 (97)
T PRK10343 51 IATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPT 88 (97)
T ss_pred ecCCChhHHHHHHHHHHHHHCCEEEeeeCcEEEEEecC
Confidence 33456788899999999999999999999999999875
No 44
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=30.91 E-value=74 Score=24.33 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=35.1
Q ss_pred eCCeeccCceEEEEE-EeccccHHHHHHHHHhhCCCCcceEEEEe
Q 033773 51 WKGEIQTDAEELLII-KTRQSLLETLTEHVKANHEYDVPEVIALP 94 (112)
Q Consensus 51 W~g~i~~~~E~~l~~-KT~~~~~~~l~~~I~~~HpYe~PeIi~~~ 94 (112)
-=|.+++ .+.+.+ |-..+.++++.+.-++.||.|+-.+++.+
T Consensus 60 PYg~~~~--~~~~~~g~Ip~~l~~~ii~hAr~~~P~EacG~Iag~ 102 (192)
T TIGR03735 60 PYGAVEE--TLEFLCGPIPASLLEEFAEAARAALPNEVAAWIVWN 102 (192)
T ss_pred cceeeee--eEEEecCCCCHHHHHHHHHHHHhcCCcceEEEEEEc
Confidence 5688888 444455 67888999999999999999999999976
No 45
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=30.69 E-value=1.8e+02 Score=19.95 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=47.0
Q ss_pred EEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccc---cHHHHHHHHHhhCCCCcc
Q 033773 12 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQS---LLETLTEHVKANHEYDVP 88 (112)
Q Consensus 12 ~v~tT~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~---~~~~l~~~I~~~HpYe~P 88 (112)
.|+.+..+.+-|++||+.|=-.---.+...+|.-+..-+=++.+. ++.+.++--+... ++=+|.-.+....-+..-
T Consensus 2 ~I~~g~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~-g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~ 80 (116)
T PF13793_consen 2 VIFSGSSSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPESVR-GKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAK 80 (116)
T ss_dssp EEEESSSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--T-TSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBS
T ss_pred EEEECCCCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEeccccc-CCceEEEEecCCchhHHHHHHHHHHHHHHHcCCc
Confidence 567777889999999999955555566677777777777777655 5667776666654 333444445555545554
Q ss_pred eEEEE
Q 033773 89 EVIAL 93 (112)
Q Consensus 89 eIi~~ 93 (112)
-|..+
T Consensus 81 ~i~~V 85 (116)
T PF13793_consen 81 RITLV 85 (116)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55444
No 46
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=30.28 E-value=2.4e+02 Score=23.32 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=40.1
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEE--EEEEeccccHHHHHHHHHhhCCCCc
Q 033773 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEEL--LIIKTRQSLLETLTEHVKANHEYDV 87 (112)
Q Consensus 10 ~~~v~tT~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~--l~~KT~~~~~~~l~~~I~~~HpYe~ 87 (112)
.-++++|-.|-.-.-.|+..|+++ +.++|.. ++---+.++.+++.+.|++.||=..
T Consensus 3 RKvalITGanSglGl~i~~RLl~~----------------------~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~ 60 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAE----------------------DDENVRLTLCLTCRNMSKAEAVCAALKAFHPKST 60 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhc----------------------cCCceeEEEEEEeCChhHHHHHHHHHHHhCCCce
Confidence 345666666667777788877765 2222222 2222355778999999999999655
Q ss_pred ceEEEEec
Q 033773 88 PEVIALPI 95 (112)
Q Consensus 88 PeIi~~~i 95 (112)
=++--+-+
T Consensus 61 i~~~yvlv 68 (341)
T KOG1478|consen 61 IEVTYVLV 68 (341)
T ss_pred eEEEEEEE
Confidence 44444333
No 47
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=30.16 E-value=1.8e+02 Score=22.63 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=31.0
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccc-cHHHHHHHHHhh
Q 033773 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQS-LLETLTEHVKAN 82 (112)
Q Consensus 10 ~~~v~tT~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~-~~~~l~~~I~~~ 82 (112)
.++|+-=+ .|+++||+.|.+.+.-.-+.+... | |... .. .+-+-+..= ..+.+.++|++.
T Consensus 4 ~IlvlgGT---~egr~la~~L~~~g~~v~~Svat~----~---g~~~-~~--~~~v~~G~l~~~~~l~~~l~~~ 64 (248)
T PRK08057 4 RILLLGGT---SEARALARALAAAGVDIVLSLAGR----T---GGPA-DL--PGPVRVGGFGGAEGLAAYLREE 64 (248)
T ss_pred eEEEEech---HHHHHHHHHHHhCCCeEEEEEccC----C---CCcc-cC--CceEEECCCCCHHHHHHHHHHC
Confidence 45554333 359999999988855333333222 1 2211 11 222222222 458889998865
No 48
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=29.37 E-value=80 Score=23.82 Aligned_cols=32 Identities=9% Similarity=0.294 Sum_probs=22.1
Q ss_pred CCCCCeEEEEEeCCCHHHHHHHHHHHHhcccc
Q 033773 5 SKTVPSIVVYVTVPNKEAGKKLAESIVKAKLA 36 (112)
Q Consensus 5 ~~~~~~~~v~tT~ps~e~A~~ia~~lve~rLa 36 (112)
.++...+++++..++.++|.++|+.|.++..-
T Consensus 79 lt~~DRVllfs~~~~~~e~~~~a~~L~~~gi~ 110 (172)
T PF10740_consen 79 LTETDRVLLFSPFSTDEEAVALAKQLIEQGIP 110 (172)
T ss_dssp --TT-EEEEEES-S--HHHHHHHHHHHHHT--
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 34556799999999999999999999999874
No 49
>PF08076 TetM_leader: Tetracycline resistance determinant leader peptide; InterPro: IPR012992 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the tetracycline resistance leader peptide, which can be found in Tet(M) ribosomal protection proteins. A short open reading frame corresponding to a 28 amino acid peptide, which contains a number of inverted repeat sequences was found immediately upstream of tet(M). Transcriptional analyses has found that expression of tet(M) resulted from an extension of a small transcript representing the upstream leader region into the resistance determinant. Therefore, this leader sequence is responsible for transcriptional attenuation and thus regulation of the transcription of tet(M) [].
Probab=29.32 E-value=29 Score=18.63 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=10.0
Q ss_pred eecCCceEEEeeC
Q 033773 40 NRVPGIESVYEWK 52 (112)
Q Consensus 40 ni~~~v~S~Y~W~ 52 (112)
..+|+=.|+|.|+
T Consensus 9 ~~fP~D~S~y~WD 21 (28)
T PF08076_consen 9 HHFPSDKSIYHWD 21 (28)
T ss_pred ccCCCccceeehh
Confidence 3467778999996
No 50
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=29.09 E-value=1.9e+02 Score=21.64 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccccHHHHHHHHHhhCCCCcc
Q 033773 17 VPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVP 88 (112)
Q Consensus 17 ~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~I~~~HpYe~P 88 (112)
-=+.+.|++|.+.+=+.+|=.=++|. ++++++.-|...++ +++++.|++. -|++|
T Consensus 99 GI~~e~AKkIvK~IKd~klKVqa~IQ---------------Gd~vRVtgKkrDDL-Q~viallk~~-d~~~p 153 (161)
T PRK05412 99 GIDQELAKKIVKLIKDSKLKVQAQIQ---------------GDQVRVTGKKRDDL-QAVIALLRKA-DLGQP 153 (161)
T ss_pred ccCHHHHHHHHHHHHhcCCceeEEec---------------CcEEEEecCCHhHH-HHHHHHHHhc-cCCCC
Confidence 34678899999999999998555553 46788888877764 6778888865 56666
No 51
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=29.07 E-value=1.9e+02 Score=19.71 Aligned_cols=54 Identities=26% Similarity=0.348 Sum_probs=35.0
Q ss_pred EEEEEeCCC-HHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccccHHHHHHHH
Q 033773 11 IVVYVTVPN-KEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHV 79 (112)
Q Consensus 11 ~~v~tT~ps-~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~I 79 (112)
+++.+...+ .+...++++.+.+- |.|.+.|...| ++-++++......+++.+.+
T Consensus 70 a~v~v~~~~~~~~~~~~~~~~~~~---------~~V~~~~~~~G------~~d~~~~~~~~~~~~~~~~~ 124 (154)
T COG1522 70 AFVEVKLERSLEDLEEFAEALAKL---------PEVVECYRVTG------DYDYLLKVRVRDLEELERFL 124 (154)
T ss_pred EEEEEEecCChhHHHHHHHHHhCC---------CCEEEEEEecC------CCcEEEEEEECCHHHHHHHH
Confidence 445555554 56677777777443 77999999999 45555555555556665544
No 52
>PRK03922 hypothetical protein; Provisional
Probab=28.95 E-value=60 Score=22.96 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.3
Q ss_pred EeCCCHHHHHHHHHHHHhccc
Q 033773 15 VTVPNKEAGKKLAESIVKAKL 35 (112)
Q Consensus 15 tT~ps~e~A~~ia~~lve~rL 35 (112)
....|.|.|.||||.-+-++|
T Consensus 80 FnAes~EHA~RIAK~eIG~aL 100 (113)
T PRK03922 80 FNAESEEHASRIAKSEIGKAL 100 (113)
T ss_pred eecCCHHHHHHHHHHHHhhHH
Confidence 457899999999999988877
No 53
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=26.84 E-value=1.9e+02 Score=21.58 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=37.3
Q ss_pred eCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccccHHHHHHHHHhhCCCCcce
Q 033773 16 TVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPE 89 (112)
Q Consensus 16 T~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~I~~~HpYe~Pe 89 (112)
.-=+.+.|++|.+.+=+.+|=.=++|. ++++++.-|...++ +++++.+++. -|++|-
T Consensus 98 ~GI~~d~AKkIvK~IKd~klKVqa~IQ---------------gd~vRVtgKkrDDL-Q~viallk~~-d~~~pL 154 (160)
T PF04461_consen 98 QGIDQDTAKKIVKLIKDSKLKVQAQIQ---------------GDQVRVTGKKRDDL-QEVIALLKEQ-DLGIPL 154 (160)
T ss_dssp -S--HHHHHHHHHHHHHH--SEEEEEE---------------TTEEEEEES-HHHH-HHHHHHHHHS---SS--
T ss_pred cccCHHHHHHHHHHHHhcCCceeEEec---------------CcEEEEecCCHHHH-HHHHHHHHcc-cCCCCc
Confidence 334688999999999999998555553 56889999988875 7778888865 677763
No 54
>PF14207 DpnD-PcfM: DpnD/PcfM-like protein
Probab=26.33 E-value=1.4e+02 Score=17.79 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=19.5
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhc
Q 033773 11 IVVYVTVPNKEAGKKLAESIVKA 33 (112)
Q Consensus 11 ~~v~tT~ps~e~A~~ia~~lve~ 33 (112)
-+|.+-+.|.++|.+.++....+
T Consensus 12 r~V~VeA~s~eeA~~~v~~~y~~ 34 (48)
T PF14207_consen 12 RVVTVEAESEEEAIEKVRDAYRN 34 (48)
T ss_pred EEEEEEeCCHHHHHHHHHHHHhC
Confidence 56888999999999999987654
No 55
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=26.31 E-value=1.1e+02 Score=27.91 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=26.1
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEe
Q 033773 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVN 40 (112)
Q Consensus 10 ~~~v~tT~ps~e~A~~ia~~lve~rLaACvn 40 (112)
.+++.=..||.++|.+|++.+.++++..+..
T Consensus 138 vaaIvG~apd~e~a~~Ia~Elq~r~~lvfl~ 168 (711)
T PRK09529 138 FAVIVGAAPDSEKAKKIIKELQKKNLLTFLC 168 (711)
T ss_pred EEEEEecCCChHHHHHHHHHHHHCCcEEEEc
Confidence 4555556689999999999999999998875
No 56
>PHA02102 hypothetical protein
Probab=25.67 E-value=36 Score=21.98 Aligned_cols=27 Identities=22% Similarity=0.553 Sum_probs=18.8
Q ss_pred HHhhCCCCcceEEEEecCC-CCHhHHHHHHhhcC
Q 033773 79 VKANHEYDVPEVIALPITG-GSQPYLEWLKSSTR 111 (112)
Q Consensus 79 I~~~HpYe~PeIi~~~i~~-~~~~Yl~Wi~~~~~ 111 (112)
+...|.|- +.+.. +.-+|.+|+..++-
T Consensus 24 lAse~~yG------vein~~nev~f~DWLsSSCY 51 (72)
T PHA02102 24 LASEQDYG------VEINDDNEVRFEDWLSSSCY 51 (72)
T ss_pred Hhhhhccc------eeeCCCCcEeHHHhhccccc
Confidence 44557774 44544 77889999998763
No 57
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=25.50 E-value=60 Score=19.20 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=12.2
Q ss_pred EEEEEeCCCHHHHHHHHHHHH
Q 033773 11 IVVYVTVPNKEAGKKLAESIV 31 (112)
Q Consensus 11 ~~v~tT~ps~e~A~~ia~~lv 31 (112)
.+.+-.++|+++|+++.+.|-
T Consensus 45 rV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 45 RVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEECCECTCCHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 333345566666666666665
No 58
>PRK05783 hypothetical protein; Provisional
Probab=25.36 E-value=1.5e+02 Score=19.65 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=21.4
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhc-ccc
Q 033773 10 SIVVYVTVPNKEAGKKLAESIVKA-KLA 36 (112)
Q Consensus 10 ~~~v~tT~ps~e~A~~ia~~lve~-rLa 36 (112)
++.+.+..+|+++|++-++.+=++ |||
T Consensus 43 ~iel~l~~~~~e~a~~~v~~mc~~LrLa 70 (84)
T PRK05783 43 YLVFKIEANSPEEAKELALKIAREGRLY 70 (84)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHhcCcC
Confidence 466788889999999988888776 465
No 59
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain. It is found in a variety of polyA polymerases as well as the Escherichia coli molybdate metabolism regulator P33345 from SWISSPROT and other proteins of unknown function.The domain is found in isolation in proteins such as Q9JN21 from SWISSPROT and is between 70 and 80 residues in length. ; PDB: 2EOC_A 2RA8_A 4DQY_C 2CR9_A.
Probab=25.31 E-value=70 Score=20.25 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=19.2
Q ss_pred EEeCCCHHHHHHHHHHHHhccc
Q 033773 14 YVTVPNKEAGKKLAESIVKAKL 35 (112)
Q Consensus 14 ~tT~ps~e~A~~ia~~lve~rL 35 (112)
...++|.++|.+....++.+|+
T Consensus 49 ~~~f~s~~eA~~~f~~~~~~K~ 70 (81)
T PF05406_consen 49 IKPFDSEEEAIKEFEKLFKEKT 70 (81)
T ss_dssp EEEESSHHHHHHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHH
Confidence 4578899999999999998876
No 60
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=25.25 E-value=56 Score=25.75 Aligned_cols=31 Identities=19% Similarity=0.499 Sum_probs=26.1
Q ss_pred EEEeCCCHHHHHHHHHHHHhccccceEeecC
Q 033773 13 VYVTVPNKEAGKKLAESIVKAKLAACVNRVP 43 (112)
Q Consensus 13 v~tT~ps~e~A~~ia~~lve~rLaACvni~~ 43 (112)
++.+..|+++|++++..|++++++-=|+-.+
T Consensus 46 ~lp~i~~r~da~~~~~~Li~~~l~~R~~k~~ 76 (232)
T TIGR00869 46 IYPTIPSRLEAIEIFILLIKNQMVIRVDKLP 76 (232)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 3457889999999999999999987776655
No 61
>PRK01392 citX 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo-citrate lyase; Reviewed
Probab=25.13 E-value=33 Score=25.83 Aligned_cols=32 Identities=19% Similarity=0.095 Sum_probs=29.8
Q ss_pred eeccCceEEEEEEeccccHHHHHHHHHhhCCC
Q 033773 54 EIQTDAEELLIIKTRQSLLETLTEHVKANHEY 85 (112)
Q Consensus 54 ~i~~~~E~~l~~KT~~~~~~~l~~~I~~~HpY 85 (112)
...++.|..+++-.....+++..-.|.+.||+
T Consensus 80 ~~~tG~E~~~~v~~~a~~vK~~~i~iEe~hpl 111 (180)
T PRK01392 80 LSATGPEGYLAIALPARDLKLAMIALEQSHPL 111 (180)
T ss_pred ccCCCceEEEEeCCCHHHHHHHHHHHHhcCcc
Confidence 45789999999999999999999999999996
No 62
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.13 E-value=76 Score=22.37 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=18.9
Q ss_pred EeCCCHHHHHHHHHHHHhcccc
Q 033773 15 VTVPNKEAGKKLAESIVKAKLA 36 (112)
Q Consensus 15 tT~ps~e~A~~ia~~lve~rLa 36 (112)
....|.|.|.|||+.-+-++|.
T Consensus 80 FNaes~EHA~RIAK~eIGk~L~ 101 (115)
T COG1885 80 FNAESDEHAERIAKAEIGKALK 101 (115)
T ss_pred ecCCCHHHHHHHHHHHHhhHhh
Confidence 4567899999999999998884
No 63
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=24.61 E-value=81 Score=18.97 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=18.1
Q ss_pred EEeCCCHHHHHHHHHHHHhcc
Q 033773 14 YVTVPNKEAGKKLAESIVKAK 34 (112)
Q Consensus 14 ~tT~ps~e~A~~ia~~lve~r 34 (112)
.-+++++++|-+.|+.+.++.
T Consensus 22 ~~~~~Tk~eAi~~Ar~~a~~~ 42 (62)
T PF09954_consen 22 SKTFDTKAEAIEAARELAKNQ 42 (62)
T ss_pred ccccCcHHHHHHHHHHHHHhC
Confidence 357899999999999999773
No 64
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=24.42 E-value=2e+02 Score=20.47 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=30.3
Q ss_pred EEEEEeccccHHHHHHHHHhhCCCCcceEEEEecCCCCHhHHHHHH
Q 033773 62 LLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLK 107 (112)
Q Consensus 62 ~l~~KT~~~~~~~l~~~I~~~HpYe~PeIi~~~i~~~~~~Yl~Wi~ 107 (112)
..++|...+...++.++..+. +++.+.+...-.....|.++..
T Consensus 56 ipIL~a~~~~L~~l~~~a~~~---~i~~~~F~~~aq~~~~y~e~~~ 98 (133)
T PF09391_consen 56 IPILKANSEQLRELRQKALER---EITVVDFTDEAQSTGHYEEYRA 98 (133)
T ss_dssp EEEEEE-HHHHHHHHHHHHHT---T---EEEEGGGGG---HHHHHH
T ss_pred eEEEEcCHHHHHHHHHHHHHC---CCeEEeChHHHhhCCCHHHHHH
Confidence 567888888888888888887 9999999998888888988854
No 65
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=23.53 E-value=1.6e+02 Score=17.09 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=17.4
Q ss_pred CCeEEEEEeCC-CHHHHHHHHHHHHh
Q 033773 8 VPSIVVYVTVP-NKEAGKKLAESIVK 32 (112)
Q Consensus 8 ~~~~~v~tT~p-s~e~A~~ia~~lve 32 (112)
||++-|.+..+ |.+.-++|++.+-+
T Consensus 1 MP~i~I~~~~grs~eqk~~l~~~it~ 26 (62)
T PRK00745 1 MPTFHIELFEGRTVEQKRKLVEEITR 26 (62)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 67788887764 67777777776644
No 66
>PF15645 Tox-PLDMTX: Dermonecrotoxin of the Papain-like fold
Probab=23.49 E-value=2.5e+02 Score=20.15 Aligned_cols=45 Identities=9% Similarity=0.221 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEecc
Q 033773 20 KEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQ 69 (112)
Q Consensus 20 ~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~ 69 (112)
.+.++.++..|=+.++ .+ +.+..+++|+|......+-...+....
T Consensus 8 ~~a~~~v~~~lk~~g~---~~--~k~~~l~~W~~~~~~~p~NH~vv~~k~ 52 (135)
T PF15645_consen 8 ESAMKEVADFLKDKGY---ED--IKYRGLLIWENANDDSPTNHFVVVAKK 52 (135)
T ss_pred HHHHHHHHHHHHhCCC---Cc--ceeeEEEEecCCCccCCcceEEEEEEE
Confidence 3566777777777776 23 358999999998888877665555443
No 67
>cd04087 PTPA Phosphotyrosyl phosphatase activator (PTPA) is also known as protein phosphatase 2A (PP2A) phosphatase activator. PTPA is an essential, well conserved protein that stimulates the tyrosyl phosphatase activity of PP2A. It also reactivates the serine/threonine phosphatase activity of an inactive form of PP2A. Together, PTPA and PP2A constitute an ATPase. It has been suggested that PTPA alters the relative specificity of PP2A from phosphoserine/phosphothreonine substrates to phosphotyrosine substrates in an ATP-hydrolysis-dependent manner. Basal expression of PTPA is controlled by the transcription factor Yin Yang1 (YY1). PTPA has been suggested to play a role in the insertion of metals to the PP2A catalytic subunit (PP2Ac) active site, to act as a chaperone, and more recently, to have peptidyl prolyl cis/trans isomerase activity that specifically targets human PP2Ac.
Probab=23.37 E-value=1.1e+02 Score=24.46 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=28.7
Q ss_pred EEeccccHHHHHHHHHhhCCCCcceEEEEecCCCCHhHHHHHHh
Q 033773 65 IKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKS 108 (112)
Q Consensus 65 ~KT~~~~~~~l~~~I~~~HpYe~PeIi~~~i~~~~~~Yl~Wi~~ 108 (112)
++..-+.++.|.+.|.+..|=+- |-..||.+|.+|.+.
T Consensus 28 i~~l~~il~~l~~~i~e~PP~~~------~~RfGN~afR~w~~~ 65 (266)
T cd04087 28 IEKLVEILDQLDALIDETPPIDQ------PSRFGNKAFRTWHDK 65 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC------CcccCCHHHHHHHHH
Confidence 33445667888888888777543 789999999999765
No 68
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=23.31 E-value=94 Score=18.83 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=27.8
Q ss_pred CeeccCceEEEEEEeccccHHHHHHHHHhhCCCC
Q 033773 53 GEIQTDAEELLIIKTRQSLLETLTEHVKANHEYD 86 (112)
Q Consensus 53 g~i~~~~E~~l~~KT~~~~~~~l~~~I~~~HpYe 86 (112)
|.+--+-.+.+.-.|..+.++.+....++.|.++
T Consensus 7 ~d~g~~C~~~~~a~tedEll~~~~~Ha~~~Hg~~ 40 (57)
T PF06348_consen 7 RDVGPDCGFVIRAETEDELLEAVVEHAREVHGMT 40 (57)
T ss_pred cccCCCCCeEEeeCCHHHHHHHHHHHHHHhcCCc
Confidence 3344566777788888999999999999999987
No 69
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=23.29 E-value=1.3e+02 Score=17.70 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=21.5
Q ss_pred EEEEecccc--HHHHHHHHHhhCCCCcceEEEEecCCCCHh
Q 033773 63 LIIKTRQSL--LETLTEHVKANHEYDVPEVIALPITGGSQP 101 (112)
Q Consensus 63 l~~KT~~~~--~~~l~~~I~~~HpYe~PeIi~~~i~~~~~~ 101 (112)
+.++..... ++++.+.+++ .|+|...-...|..+
T Consensus 1 V~V~~~~~~~~~~~~~~~l~~-----~p~V~~~~~vtG~~d 36 (74)
T PF01037_consen 1 VLVKVEPGHDAYDEFAEALAE-----IPEVVECYSVTGEYD 36 (74)
T ss_dssp EEEEESTTGTHHHHHHHHHHT-----STTEEEEEEESSSSS
T ss_pred CEEEEcCCCchHHHHHHHHHc-----CCCEEEEEEEeCCCC
Confidence 356666666 7777777775 566666655555443
No 70
>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....
Probab=22.80 E-value=68 Score=25.44 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=14.5
Q ss_pred cCCceEEEeeCCeeccCceEEEEEEe
Q 033773 42 VPGIESVYEWKGEIQTDAEELLIIKT 67 (112)
Q Consensus 42 ~~~v~S~Y~W~g~i~~~~E~~l~~KT 67 (112)
-++|.|+|.|+-.-..+-=-.++||=
T Consensus 114 eGGvSSVYlWd~d~~~gFag~vLiKK 139 (242)
T PF01115_consen 114 EGGVSSVYLWDLDDDDGFAGVVLIKK 139 (242)
T ss_dssp SSSEEEEEEEEETT--EEEEEEEEEE
T ss_pred CCCeeEEEEEecCCCcceeEEEEEEe
Confidence 35799999997442223334444443
No 71
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=22.75 E-value=1.7e+02 Score=21.68 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.5
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHHh
Q 033773 9 PSIVVYVTVPNKEAGKKLAESIVK 32 (112)
Q Consensus 9 ~~~~v~tT~ps~e~A~~ia~~lve 32 (112)
..+-|-.+.+|.+.|.+||.++++
T Consensus 119 ~ii~Isv~~~dp~~A~~ian~~~~ 142 (226)
T TIGR01006 119 RLISISVKDKTPQDASKIANSLRE 142 (226)
T ss_pred EEEEEEEeCCCHHHHHHHHHHHHH
Confidence 367899999999999999999987
No 72
>COG2049 DUR1 Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]
Probab=22.41 E-value=1.1e+02 Score=23.95 Aligned_cols=76 Identities=22% Similarity=0.230 Sum_probs=46.9
Q ss_pred eCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccccHHHHHHHHHhhCCCCcceEEEEec
Q 033773 16 TVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPI 95 (112)
Q Consensus 16 T~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~I~~~HpYe~PeIi~~~i 95 (112)
++........+++.|.+..+.+=+.+.|..+|+..==+ ..++.-+...+.+.++.+.++..-+-+. .+|.+|+
T Consensus 18 ~~~~~~~i~al~~~l~~~~~~gvve~vP~~~sllv~~d------~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~IeIPV 90 (223)
T COG2049 18 SLELQRRIWALARALEAAPLPGVVEIVPGYRSLLVIYD------PPRLDPQELLERLRALWEEIEALEAAGI-RLIEIPV 90 (223)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCeEEecccceeEEEEec------ccccCHHHHHHHHHHHHhchhhhccccC-CEEEEee
Confidence 44455566779999999999999999999999853211 1222222222233333333333323333 8999999
Q ss_pred CCC
Q 033773 96 TGG 98 (112)
Q Consensus 96 ~~~ 98 (112)
..+
T Consensus 91 ~Y~ 93 (223)
T COG2049 91 VYG 93 (223)
T ss_pred EeC
Confidence 987
No 73
>TIGR01719 euk_UDPppase uridine phosphorylase. This model represents a clade of mainly eucaryotic uridine phosphorylases. Genes from human and mouse have been characterized. This enzyme is a member of the PHP/UDP subfamily (pfam01048) and is closely related to the bacterial uridine (TIGR01718) and inosine (TIGR00107) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer.
Probab=21.88 E-value=1.4e+02 Score=23.63 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=29.0
Q ss_pred EEEEeCCCHHHHHHHHHHHHhccccceEeecCCce
Q 033773 12 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIE 46 (112)
Q Consensus 12 ~v~tT~ps~e~A~~ia~~lve~rLaACvni~~~v~ 46 (112)
=+.+...|..-|+.||+.|.+.+.+++.+-.....
T Consensus 32 ~~vi~~GDP~Ra~~iA~~l~~~~~~~~~~~~r~~~ 66 (287)
T TIGR01719 32 KFVCMGGTPSRMKAFARYVGAELGLSCGRDYPNIS 66 (287)
T ss_pred CEEEeCCCHHHHHHHHHHHhhhhcccccccceeee
Confidence 56778999999999999999999999976555444
No 74
>PF14280 DUF4365: Domain of unknown function (DUF4365)
Probab=21.85 E-value=99 Score=20.92 Aligned_cols=77 Identities=26% Similarity=0.285 Sum_probs=41.6
Q ss_pred HHHHHHhccccceEeecC-CceEEEeeCCeec--------cCceEEEEEEeccccHHH---------H-HHHHHhhCCCC
Q 033773 26 LAESIVKAKLAACVNRVP-GIESVYEWKGEIQ--------TDAEELLIIKTRQSLLET---------L-TEHVKANHEYD 86 (112)
Q Consensus 26 ia~~lve~rLaACvni~~-~v~S~Y~W~g~i~--------~~~E~~l~~KT~~~~~~~---------l-~~~I~~~HpYe 86 (112)
+|...++..++++..+.. .-..=|=++|.|+ .+.-+.+.+|++.+.+.. + .+.+.-...+.
T Consensus 3 ~~~~~v~~~~~~~g~~~~~~~~~D~GiD~~Ie~~~~~g~~tg~~i~VQlK~t~~~~~~~~~~~~~~~~~~~~l~y~~~~~ 82 (138)
T PF14280_consen 3 LGEAYVRAILAKAGWIFRVEPDDDYGIDGEIEIVDDDGKPTGRRIAVQLKSTESYFYENDDGSFSFPLDKEHLNYWLNHP 82 (138)
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCccEeeEEEEEecCCcccCCEEEEEEcccCcccccCCCceEEEeeCHHHHHHHhcCC
Confidence 444555555555522221 1122244555444 456889999999987620 1 33333344467
Q ss_pred cceEEEEecCCCCHhH
Q 033773 87 VPEVIALPITGGSQPY 102 (112)
Q Consensus 87 ~PeIi~~~i~~~~~~Y 102 (112)
+|.|+++-.......|
T Consensus 83 ~PvilV~~~~~~~~~y 98 (138)
T PF14280_consen 83 VPVILVLVDPDSDCAY 98 (138)
T ss_pred CCEEEEEEeCCCCEEE
Confidence 7888885544444455
No 75
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=21.60 E-value=87 Score=21.67 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHhcccc
Q 033773 17 VPNKEAGKKLAESIVKAKLA 36 (112)
Q Consensus 17 ~ps~e~A~~ia~~lve~rLa 36 (112)
..|++||..||..|++++-.
T Consensus 47 v~~r~EAl~las~Ll~eGyL 66 (99)
T cd04445 47 VRNRQEGLMLASSLLNEGYL 66 (99)
T ss_pred ccchHHHHHHHHHHHHcCCe
Confidence 45799999999999998754
No 76
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.16 E-value=1.7e+02 Score=22.31 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.1
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccc
Q 033773 10 SIVVYVTVPNKEAGKKLAESIVKAKL 35 (112)
Q Consensus 10 ~~~v~tT~ps~e~A~~ia~~lve~rL 35 (112)
.++..+...|.++|..++++|++.++
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi 39 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGI 39 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCC
Confidence 36777888899999999999988775
No 77
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=21.15 E-value=1.5e+02 Score=22.99 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=22.7
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhcccc
Q 033773 11 IVVYVTVPNKEAGKKLAESIVKAKLA 36 (112)
Q Consensus 11 ~~v~tT~ps~e~A~~ia~~lve~rLa 36 (112)
++-.....+.|+|..++++|++.++=
T Consensus 15 vI~Vlr~~~~e~a~~~a~Ali~gGi~ 40 (211)
T COG0800 15 VVPVIRGDDVEEALPLAKALIEGGIP 40 (211)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 67778889999999999999998764
No 78
>PRK00441 argR arginine repressor; Provisional
Probab=21.13 E-value=1.8e+02 Score=20.95 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=24.9
Q ss_pred CceEEEEEEeccccHHHHHHHHHhhCCCCcceEEEE
Q 033773 58 DAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIAL 93 (112)
Q Consensus 58 ~~E~~l~~KT~~~~~~~l~~~I~~~HpYe~PeIi~~ 93 (112)
-.+..+++||.+...+.+...|-+. +.|+|++.
T Consensus 88 ~~~~lvvIkT~pG~A~~va~~iD~~---~~~eI~GT 120 (149)
T PRK00441 88 NVDNMIVIKTISGSASAAAEAIDTL---NFDGIAGT 120 (149)
T ss_pred ecCCEEEEEeCCCcHHHHHHHHHhC---CCCCeEEE
Confidence 4578999999999988877777655 34777654
No 79
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=21.04 E-value=1.9e+02 Score=18.90 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=25.8
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhccccceEeecCC
Q 033773 10 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPG 44 (112)
Q Consensus 10 ~~~v~tT~ps~e~A~~ia~~lve~rLaACvni~~~ 44 (112)
+.+|++.++|.+..++|.+..-+.|.-.++-=.|+
T Consensus 61 ~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p~ 95 (103)
T PF13241_consen 61 ADLVFAATDDPELNEAIYADARARGILVNVVDDPE 95 (103)
T ss_dssp ESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-CC
T ss_pred heEEEecCCCHHHHHHHHHHHhhCCEEEEECCCcC
Confidence 56888999999999999999987887776644443
No 80
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=20.92 E-value=1.9e+02 Score=20.71 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=25.1
Q ss_pred CceEEEEEEeccccHHHHHHHHHhhCCCCcceEEEE
Q 033773 58 DAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIAL 93 (112)
Q Consensus 58 ~~E~~l~~KT~~~~~~~l~~~I~~~HpYe~PeIi~~ 93 (112)
..|..+++||.+.....+...|-+... |+|++.
T Consensus 86 ~~~~~vvikT~pG~A~~va~~iD~~~~---~~i~Gt 118 (146)
T TIGR01529 86 RAGNLIVIRTKPGEASVIANLLDRLDK---DEILGT 118 (146)
T ss_pred ccCCEEEEEeCCCcHHHHHHHHHhCCC---CceEEE
Confidence 367899999999998887777766643 677654
No 81
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=20.92 E-value=1.6e+02 Score=16.63 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=19.6
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhccc
Q 033773 11 IVVYVTVPNKEAGKKLAESIVKAKL 35 (112)
Q Consensus 11 ~~v~tT~ps~e~A~~ia~~lve~rL 35 (112)
-.+++++.|.++|++..+.|=...+
T Consensus 22 ~~a~V~f~~~~~A~~a~~~l~~~~~ 46 (56)
T PF13893_consen 22 GFAFVEFASVEDAQKAIEQLNGRQF 46 (56)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3578889999999999888854444
No 82
>PRK11178 uridine phosphorylase; Provisional
Probab=20.86 E-value=2.1e+02 Score=22.06 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=41.7
Q ss_pred EEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeeccCceEEEEEEeccccHHHHHHHHHhhCCCCcceEEE
Q 033773 13 VYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIA 92 (112)
Q Consensus 13 v~tT~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~I~~~HpYe~PeIi~ 92 (112)
+.+.+++.++++.|++.|-..+..+ ...++..|.|.+. +.+ ++++.|--.+...-. .+.++.-+..=.||.
T Consensus 19 i~Ii~g~p~e~~~ia~~l~~~~~~~------~~~~~~~~~G~~~-g~~-v~v~~~GiG~~~Aa~-~~~eLi~~g~~~iI~ 89 (251)
T PRK11178 19 LAIVPGDPERVEKIAALMDNPVFLA------SHREFTSWRAELD-GKP-VIVCSTGIGGPSTSI-AVEELAQLGVRTFLR 89 (251)
T ss_pred EEEECCCHHHHHHHHHHhccchhee------eccCeEEEEEEEc-CEE-EEEEecCCCHHHHHH-HHHHHHHcCCCEEEE
Confidence 5678899999999998664443211 2466777888873 333 555666555433322 234444454444444
Q ss_pred E
Q 033773 93 L 93 (112)
Q Consensus 93 ~ 93 (112)
+
T Consensus 90 ~ 90 (251)
T PRK11178 90 I 90 (251)
T ss_pred E
Confidence 4
No 83
>KOG3174 consensus F-actin capping protein, beta subunit [Cytoskeleton]
Probab=20.67 E-value=1e+02 Score=24.83 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=19.0
Q ss_pred ecCCceEEEeeCCeeccCceEEEEEEeccc
Q 033773 41 RVPGIESVYEWKGEIQTDAEELLIIKTRQS 70 (112)
Q Consensus 41 i~~~v~S~Y~W~g~i~~~~E~~l~~KT~~~ 70 (112)
+.++|.|+|.|+-.-.-=.+++++=|-...
T Consensus 112 ~egGvssVylwdld~~gfag~vlikK~~~~ 141 (275)
T KOG3174|consen 112 YEGGVSSVYLWDLDFGGFAGVVLIKKAGDG 141 (275)
T ss_pred eecCcceEEEEeccCCCcccceEEeeccCC
Confidence 556899999998664434455555554433
No 84
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=20.33 E-value=2e+02 Score=24.15 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=26.0
Q ss_pred eEEEEEeCCCHHHHHHHHHHHH---hccccceEe
Q 033773 10 SIVVYVTVPNKEAGKKLAESIV---KAKLAACVN 40 (112)
Q Consensus 10 ~~~v~tT~ps~e~A~~ia~~lv---e~rLaACvn 40 (112)
.++..+.++|.++|-++|...+ +-+|+|++-
T Consensus 332 PVl~v~~~~~~~eAi~~aN~~~~~~~~GLsa~V~ 365 (436)
T cd07122 332 PVLAFYRAEDFEEALEKARELLEYGGAGHTAVIH 365 (436)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhccCCCceEEEE
Confidence 4888899999999999999875 368888874
No 85
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=20.28 E-value=1.1e+02 Score=24.96 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=26.2
Q ss_pred EEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEeeCC
Q 033773 12 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKG 53 (112)
Q Consensus 12 ~v~tT~ps~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g 53 (112)
+|+.+.|+. .+++++..+.+ ++|. ++. -.|-||.+.
T Consensus 72 ~vf~a~p~~-~s~~~~~~~~~---~g~~-VID-lS~~fR~~~ 107 (344)
T PLN02383 72 IALFSAGGS-ISKKFGPIAVD---KGAV-VVD-NSSAFRMEE 107 (344)
T ss_pred EEEECCCcH-HHHHHHHHHHh---CCCE-EEE-CCchhhcCC
Confidence 566777874 68888887766 3566 455 688999988
No 86
>PF06174 DUF987: Protein of unknown function (DUF987); InterPro: IPR009329 This is a family of bacterial proteins that are related to the hypothetical protein YeeT.
Probab=20.20 E-value=76 Score=20.32 Aligned_cols=33 Identities=15% Similarity=0.354 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHhccccceEeecCCceEEEeeCCeecc
Q 033773 19 NKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQT 57 (112)
Q Consensus 19 s~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~g~i~~ 57 (112)
|+..|-.|.+.=-+.||..= -+.-|.|-|.++.
T Consensus 5 sKr~Am~i~rqhp~sRl~ry------ctGkY~W~Gs~~h 37 (66)
T PF06174_consen 5 SKRRAMTIYRQHPESRLFRY------CTGKYQWHGSVCH 37 (66)
T ss_pred eHHHHHHHHHhCchhhcccc------ccccceeeccccc
Confidence 46789999999889998432 3567999998875
Done!