BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033774
         (112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VP8|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Yeast
          General Corepressor Tup1p
 pdb|3VP8|B Chain B, Crystal Structure Of The N-Terminal Domain Of The Yeast
          General Corepressor Tup1p
 pdb|3VP8|C Chain C, Crystal Structure Of The N-Terminal Domain Of The Yeast
          General Corepressor Tup1p
 pdb|3VP8|D Chain D, Crystal Structure Of The N-Terminal Domain Of The Yeast
          General Corepressor Tup1p
          Length = 92

 Score = 27.3 bits (59), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 59 ANDQNKVKELMDSIQQIGLQVPVRTN 84
          +N QNK+ EL+D+I+Q  LQV    N
Sbjct: 6  SNTQNKLNELLDAIRQEFLQVSQEAN 31


>pdb|3VP9|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Yeast
          General Corepressor Tup1p Mutant
 pdb|3VP9|B Chain B, Crystal Structure Of The N-Terminal Domain Of The Yeast
          General Corepressor Tup1p Mutant
          Length = 92

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 59 ANDQNKVKELMDSIQQIGLQVPVRTN 84
          +N QNK+ EL+D+I+Q  LQV    N
Sbjct: 6  SNTQNKLNELLDAIRQEFLQVSQEAN 31


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.142    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,374,534
Number of Sequences: 62578
Number of extensions: 61907
Number of successful extensions: 133
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 6
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)