BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033774
         (112 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GY89|SRX_ARATH Sulfiredoxin, chloroplastic/mitochondrial OS=Arabidopsis thaliana
          GN=SRX PE=1 SV=1
          Length = 125

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 42/42 (100%)

Query: 40 PVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPV 81
          P+I+ELPL+KIRRPLMRTR+NDQNKVKELMDSI+QIGLQVP+
Sbjct: 38 PMIVELPLEKIRRPLMRTRSNDQNKVKELMDSIRQIGLQVPI 79


>sp|F1NNL1|TM231_CHICK Transmembrane protein 231 OS=Gallus gallus GN=TMEM231 PE=3 SV=2
          Length = 320

 Score = 35.0 bits (79), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 24  SSNGNPPGSSESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPVRT 83
           ++ G  PGS  +  + P    L  D++R PL+ TR  D+N+  + MD +    L++P++ 
Sbjct: 72  ATTGPGPGSFLAWSTFPAFNRLQEDRLRVPLLSTREEDKNQDGK-MDQL-HFKLELPLQ- 128

Query: 84  NHPPPPRAVNLIILVEIFSLAKYCLPMII 112
               P   V  + L+ IFS   Y +   +
Sbjct: 129 ----PTEHVVGVQLILIFSYQLYRMSTFV 153


>sp|Q5REB8|ACSS3_PONAB Acyl-CoA synthetase short-chain family member 3, mitochondrial
           OS=Pongo abelii GN=ACSS3 PE=2 SV=1
          Length = 686

 Score = 29.6 bits (65), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 2   ANFVVQLPKTNSFNLKRFCVSASSNGNP 29
           A FV QLPKT S  + R  +SA  NG P
Sbjct: 636 AVFVKQLPKTRSGKIPRSALSAIVNGKP 663


>sp|Q9H6R3|ACSS3_HUMAN Acyl-CoA synthetase short-chain family member 3, mitochondrial
           OS=Homo sapiens GN=ACSS3 PE=1 SV=1
          Length = 686

 Score = 29.6 bits (65), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 2   ANFVVQLPKTNSFNLKRFCVSASSNGNP 29
           A FV QLPKT S  + R  +SA  NG P
Sbjct: 636 AVFVKQLPKTRSGKIPRSALSAIVNGKP 663


>sp|A7MB45|ACSS3_BOVIN Acyl-CoA synthetase short-chain family member 3, mitochondrial
           OS=Bos taurus GN=ACSS3 PE=2 SV=1
          Length = 686

 Score = 29.3 bits (64), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 2   ANFVVQLPKTNSFNLKRFCVSASSNGNP 29
           A FV QLPKT S  + R  +SA  NG P
Sbjct: 635 AVFVKQLPKTRSGKIPRSTLSALVNGKP 662


>sp|Q14DH7|ACSS3_MOUSE Acyl-CoA synthetase short-chain family member 3, mitochondrial
           OS=Mus musculus GN=Acss3 PE=2 SV=2
          Length = 682

 Score = 29.3 bits (64), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 2   ANFVVQLPKTNSFNLKRFCVSASSNGNP 29
           A FV QLPKT S  + R  +SA  NG P
Sbjct: 631 AVFVKQLPKTRSGKIPRSTLSALVNGKP 658


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,412,533
Number of Sequences: 539616
Number of extensions: 1530122
Number of successful extensions: 4270
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4258
Number of HSP's gapped (non-prelim): 16
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)