Query 033775
Match_columns 112
No_of_seqs 102 out of 394
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03650 MPC: Uncharacterised 100.0 1.7E-57 3.8E-62 330.9 6.5 102 2-103 4-105 (119)
2 KOG1589 Uncharacterized conser 100.0 2.4E-55 5.3E-60 317.7 5.1 103 1-103 7-109 (118)
3 KOG1590 Uncharacterized conser 100.0 6.2E-47 1.3E-51 277.9 3.5 104 3-106 10-116 (132)
4 PF03083 MtN3_slv: Sugar efflu 96.3 0.0021 4.5E-08 42.6 1.5 58 37-96 28-85 (87)
5 KOG1623 Multitransmembrane pro 93.4 0.034 7.4E-07 45.1 1.0 76 20-97 131-211 (243)
6 PF14880 COX14: Cytochrome oxi 39.9 48 0.001 21.0 3.3 29 71-99 20-48 (59)
7 PF14795 Leucyl-specific: Leuc 36.5 14 0.00031 24.1 0.4 7 16-22 50-56 (56)
8 PF15048 OSTbeta: Organic solu 34.4 33 0.00072 25.6 2.1 42 59-100 23-67 (125)
9 KOG1623 Multitransmembrane pro 30.1 51 0.0011 26.9 2.7 59 37-96 34-92 (243)
10 PF08229 SHR3_chaperone: ER me 24.3 99 0.0021 24.5 3.3 62 34-95 78-160 (196)
11 KOG2629 Peroxisomal membrane a 24.1 63 0.0014 27.4 2.3 35 68-102 84-118 (300)
12 PF11676 DUF3272: Protein of u 21.8 1.3E+02 0.0029 19.9 3.0 38 69-106 20-57 (61)
13 PRK12772 bifunctional flagella 21.2 37 0.00081 30.6 0.4 13 99-111 477-489 (609)
14 COG5557 Polysulphide reductase 20.7 39 0.00085 29.6 0.5 63 5-70 267-342 (401)
15 PF14246 TetR_C_7: AefR-like t 20.6 1.9E+02 0.0042 16.8 4.1 44 65-108 3-46 (55)
16 cd00928 Cyt_c_Oxidase_VIIa Cyt 20.6 37 0.0008 22.0 0.2 25 39-63 26-50 (55)
No 1
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=100.00 E-value=1.7e-57 Score=330.90 Aligned_cols=102 Identities=46% Similarity=0.858 Sum_probs=98.6
Q ss_pred hhhhHhhcCCCCCcceeeccccccccccccccccCCCCcccccccchhHHHhhhhhhhhhheeeccchhhhhhhhhhhhh
Q 033775 2 EILKTFWNSPMGPKTTHFWGPAFNWGLPFAAFLDTKKPPELISGSMTGVMCVYSALCMRFAWMVQPRNLHLLACHASNES 81 (112)
Q Consensus 2 ~~~~~~~~~paGpkTvhFWgP~~kWgl~iA~l~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~ 81 (112)
+++++||+||+||+|||||||++|||||||||+|++||||+||++||+|||+||+|||||||+|+||||+||+||++|++
T Consensus 4 ~~~~~~~~~~~gp~T~hFWaP~~kWgl~iA~i~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~ 83 (119)
T PF03650_consen 4 AKFRRFWNSPAGPKTTHFWAPVAKWGLPIAGIADMKRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNAT 83 (119)
T ss_pred HHHHHHHcCccccceEEeehhheeheeeeeehhhcCCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccchHHHHH
Q 033775 82 VQLYQLSRWAMAPRSLEEEEQQ 103 (112)
Q Consensus 82 ~q~~Ql~R~~~~~~~~~~~~~~ 103 (112)
+|+||++|+++|+++.++++++
T Consensus 84 ~q~~Ql~R~~~y~~~~~~~~~~ 105 (119)
T PF03650_consen 84 TQLYQLYRKLNYQYSQKKEAKQ 105 (119)
T ss_pred HHHHHHHHHHHHHhhcCchhHH
Confidence 9999999999999998877655
No 2
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.4e-55 Score=317.70 Aligned_cols=103 Identities=31% Similarity=0.645 Sum_probs=98.2
Q ss_pred ChhhhHhhcCCCCCcceeeccccccccccccccccCCCCcccccccchhHHHhhhhhhhhhheeeccchhhhhhhhhhhh
Q 033775 1 MEILKTFWNSPMGPKTTHFWGPAFNWGLPFAAFLDTKKPPELISGSMTGVMCVYSALCMRFAWMVQPRNLHLLACHASNE 80 (112)
Q Consensus 1 m~~~~~~~~~paGpkTvhFWgP~~kWgl~iA~l~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~ 80 (112)
|+++|++||||+||||||||||++|||||+|||+|++||||+||+.|+.||++||+||+|||++|+|+||+||+||+|++
T Consensus 7 ~~k~r~~WnhpaGPKTVhFWAPt~KWglv~AglaD~arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~ 86 (118)
T KOG1589|consen 7 VAKLRPLWNHPAGPKTVHFWAPTFKWGLVIAGLADLARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVA 86 (118)
T ss_pred HHHHHHHhcCCCCCcEEEEecchhhhhheeecHHhhcCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccccchHHHHH
Q 033775 81 SVQLYQLSRWAMAPRSLEEEEQQ 103 (112)
Q Consensus 81 ~~q~~Ql~R~~~~~~~~~~~~~~ 103 (112)
++|+|||.|+++|++.++..|.|
T Consensus 87 ~tg~~QL~Ri~~y~~~~~~~~~~ 109 (118)
T KOG1589|consen 87 ITGIYQLTRIANYQQQQKALEGE 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998877665555
No 3
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.2e-47 Score=277.95 Aligned_cols=104 Identities=54% Similarity=0.899 Sum_probs=97.5
Q ss_pred hhhHhhcCCCCCc---ceeeccccccccccccccccCCCCcccccccchhHHHhhhhhhhhhheeeccchhhhhhhhhhh
Q 033775 3 ILKTFWNSPMGPK---TTHFWGPAFNWGLPFAAFLDTKKPPELISGSMTGVMCVYSALCMRFAWMVQPRNLHLLACHASN 79 (112)
Q Consensus 3 ~~~~~~~~paGpk---TvhFWgP~~kWgl~iA~l~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~ 79 (112)
++..+.+++.+++ |||||||++|||||||+|.||+|+||.||++||+|||+||.+||||+|.|+||||+||+||++|
T Consensus 10 ~~~~~~~ske~r~Y~~sTHFWGPvaNwGlpiAal~DmkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N 89 (132)
T KOG1590|consen 10 RFQDFLNSKEFRKYFMSTHFWGPVANWGLPIAALVDMKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATN 89 (132)
T ss_pred HHHHHhcChHHhhhhhhcccccchhhccchHHHHHhccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhh
Confidence 4678889999997 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccccchHHHHHHhh
Q 033775 80 ESVQLYQLSRWAMAPRSLEEEEQQQKK 106 (112)
Q Consensus 80 ~~~q~~Ql~R~~~~~~~~~~~~~~~~k 106 (112)
+++|++|++|+++|+|...++|++..+
T Consensus 90 ~taQ~~Qg~Rf~~~~Y~~~~~e~~~~~ 116 (132)
T KOG1590|consen 90 ETAQLAQGSRFLNYNYGSTGEEKKKPS 116 (132)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcccc
Confidence 999999999999999988777766433
No 4
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=96.29 E-value=0.0021 Score=42.62 Aligned_cols=58 Identities=10% Similarity=0.114 Sum_probs=54.2
Q ss_pred CCCcccccccchhHHHhhhhhhhhhheeeccchhhhhhhhhhhhhHHHHHHHHHHhcccc
Q 033775 37 KKPPELISGSMTGVMCVYSALCMRFAWMVQPRNLHLLACHASNESVQLYQLSRWAMAPRS 96 (112)
Q Consensus 37 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~~~~~ 96 (112)
+|..+.+|..+..+..+.+.+|.+|.+.+ .|+.++.+|++-...+++|+.=++.|.+.
T Consensus 28 ~ks~~~~~~~~~~~~~~~~~~W~~YG~l~--~d~~i~~~N~~g~~~~~~~~~~~~~y~~~ 85 (87)
T PF03083_consen 28 TKSTGSVSFPPFLAMFFNCVLWLIYGILI--NDWPIIVPNVFGLVLSIIYLVVYYIYPSK 85 (87)
T ss_pred CCCCCccceehhHHHhhhccHhhhhhhhc--CCeeEEeeHHHHHHHHHHHHhheEEeCCC
Confidence 69999999999999999999999999998 59999999999999999999988888764
No 5
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=93.35 E-value=0.034 Score=45.09 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=64.8
Q ss_pred ccccccccccccccccC-----CCCcccccccchhHHHhhhhhhhhhheeeccchhhhhhhhhhhhhHHHHHHHHHHhcc
Q 033775 20 WGPAFNWGLPFAAFLDT-----KKPPELISGSMTGVMCVYSALCMRFAWMVQPRNLHLLACHASNESVQLYQLSRWAMAP 94 (112)
Q Consensus 20 WgP~~kWgl~iA~l~D~-----~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~~~ 94 (112)
-+-++|=....|+|++| +|..|.+....+.|+.+.+..|+=|.+.| +|..++.-|+.-...++.||.=+.+|.
T Consensus 131 vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli--~D~~IaipN~iG~~l~~~QL~Ly~~y~ 208 (243)
T KOG1623|consen 131 VCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLI--KDFFIAIPNVLGFLLGLIQLILYFKYP 208 (243)
T ss_pred hhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHh--cCeEEEcccHHHHHHHHHHHHHhhhcC
Confidence 33555666667778887 58999999999999999999999999999 999999999999999999999887776
Q ss_pred ccc
Q 033775 95 RSL 97 (112)
Q Consensus 95 ~~~ 97 (112)
...
T Consensus 209 ~~~ 211 (243)
T KOG1623|consen 209 KTT 211 (243)
T ss_pred CCc
Confidence 654
No 6
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=39.90 E-value=48 Score=21.01 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=19.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhccccchH
Q 033775 71 HLLACHASNESVQLYQLSRWAMAPRSLEE 99 (112)
Q Consensus 71 ~L~a~n~~~~~~q~~Ql~R~~~~~~~~~~ 99 (112)
.|.+.-+..+..-+|..++..+|.+....
T Consensus 20 ~Lig~T~~~g~~~~~~~y~~~~~~r~~~~ 48 (59)
T PF14880_consen 20 GLIGFTVYGGGLTVYTVYSYFKYNRRRRA 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667777888888877765544
No 7
>PF14795 Leucyl-specific: Leucine-tRNA synthetase-specific domain; PDB: 1OBC_A 2BTE_A 2V0G_A 2BYT_A 1OBH_A 1H3N_A 2V0C_A.
Probab=36.54 E-value=14 Score=24.07 Aligned_cols=7 Identities=71% Similarity=1.659 Sum_probs=6.3
Q ss_pred ceeeccc
Q 033775 16 TTHFWGP 22 (112)
Q Consensus 16 TvhFWgP 22 (112)
|+|||-|
T Consensus 50 ~~h~WKP 56 (56)
T PF14795_consen 50 TLHFWKP 56 (56)
T ss_dssp SEEEEEE
T ss_pred eEeecCC
Confidence 8999987
No 8
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=34.39 E-value=33 Score=25.64 Aligned_cols=42 Identities=24% Similarity=0.280 Sum_probs=34.1
Q ss_pred hhhheee---ccchhhhhhhhhhhhhHHHHHHHHHHhccccchHH
Q 033775 59 MRFAWMV---QPRNLHLLACHASNESVQLYQLSRWAMAPRSLEEE 100 (112)
Q Consensus 59 ~Rys~~I---~P~Ny~L~a~n~~~~~~q~~Ql~R~~~~~~~~~~~ 100 (112)
|+|.+.+ +|=||.+++--+.....++.-|.|-++.++..+.-
T Consensus 23 mlW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~~ 67 (125)
T PF15048_consen 23 MLWFFRVEDATPWNYSILALSFVVLVISFFLLGRSIQANRNRKMQ 67 (125)
T ss_pred HHHheecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhccccccc
Confidence 5555665 78999999999999999999999998888765433
No 9
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=30.15 E-value=51 Score=26.90 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=46.5
Q ss_pred CCCcccccccchhHHHhhhhhhhhhheeeccchhhhhhhhhhhhhHHHHHHHHHHhcccc
Q 033775 37 KKPPELISGSMTGVMCVYSALCMRFAWMVQPRNLHLLACHASNESVQLYQLSRWAMAPRS 96 (112)
Q Consensus 37 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~~~~~ 96 (112)
+|..|.+|.-=--.=.+.+++|+||.+...= .+++-.+|.+....+..=+.=++-|...
T Consensus 34 kkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~-d~llitIN~~G~~ie~~Yi~~f~~ya~~ 92 (243)
T KOG1623|consen 34 KKSVEGFSSLPFLMGLLSCSLWLYYGLLKVH-DYLLITINGIGLVIETVYISIFLYYAPK 92 (243)
T ss_pred ccCcCCCCCcCcHHHHHHHHHHHHhhhhccC-ceEEEEEehhcHHHHHHHHHHHheecCc
Confidence 6888988876655556788999999965544 7999999999999998777776666543
No 10
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=24.29 E-value=99 Score=24.47 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=36.5
Q ss_pred ccCCCCcccccccchhHHHhhhhhhhhhheeecc--------------chh---hhhhhhhhh----hhHHHHHHHHHHh
Q 033775 34 LDTKKPPELISGSMTGVMCVYSALCMRFAWMVQP--------------RNL---HLLACHASN----ESVQLYQLSRWAM 92 (112)
Q Consensus 34 ~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P--------------~Ny---~L~a~n~~~----~~~q~~Ql~R~~~ 92 (112)
.-+.||-|.--..--++|.+|..--.=|-..|.| ||- .|+|.|+.. .++=+.|.++++-
T Consensus 78 iKl~kp~e~~~lFdg~SL~Ly~~~i~vYltni~~gi~~~~~~~~~~v~r~~~l~VlAASn~Ii~~~LvGVLvLQaG~~YA 157 (196)
T PF08229_consen 78 IKLYKPSESNKLFDGASLVLYVFGICVYLTNIVPGIRSVSSGNWGEVDREDGLRVLAASNTIIALVLVGVLVLQAGQWYA 157 (196)
T ss_pred HHHcCCcHHhhcccchhHHHHHHHHHHHhHhhHhHHHhcCCCCcccccHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHH
Confidence 3356777766666667777777655555444433 343 456666543 3445578888765
Q ss_pred ccc
Q 033775 93 APR 95 (112)
Q Consensus 93 ~~~ 95 (112)
.+.
T Consensus 158 e~~ 160 (196)
T PF08229_consen 158 ERK 160 (196)
T ss_pred hhh
Confidence 443
No 11
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.14 E-value=63 Score=27.38 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=25.9
Q ss_pred chhhhhhhhhhhhhHHHHHHHHHHhccccchHHHH
Q 033775 68 RNLHLLACHASNESVQLYQLSRWAMAPRSLEEEEQ 102 (112)
Q Consensus 68 ~Ny~L~a~n~~~~~~q~~Ql~R~~~~~~~~~~~~~ 102 (112)
|-|...++=+.-..-++|+++|.|-..+.++++++
T Consensus 84 rdy~vmAvi~aGi~y~~y~~~K~YV~P~~l~~~~~ 118 (300)
T KOG2629|consen 84 RDYFVMAVILAGIAYAAYRFVKSYVLPRFLGESKD 118 (300)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCccch
Confidence 34556666666667788999999888888876665
No 12
>PF11676 DUF3272: Protein of unknown function (DUF3272); InterPro: IPR021690 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=21.77 E-value=1.3e+02 Score=19.90 Aligned_cols=38 Identities=11% Similarity=-0.060 Sum_probs=30.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHhccccchHHHHHHhh
Q 033775 69 NLHLLACHASNESVQLYQLSRWAMAPRSLEEEEQQQKK 106 (112)
Q Consensus 69 Ny~L~a~n~~~~~~q~~Ql~R~~~~~~~~~~~~~~~~k 106 (112)
|..+++-+.+.+.-=++-++|.++--|-.++-.++-.|
T Consensus 20 N~ai~~g~y~~A~Fw~~Ll~Rnl~~aY~v~K~~~~i~~ 57 (61)
T PF11676_consen 20 NEAIMSGDYFFAFFWGFLLFRNLRVAYVVDKFVKEIDK 57 (61)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999998887776665555433
No 13
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=21.19 E-value=37 Score=30.62 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=8.9
Q ss_pred HHHHHHhhHhhhc
Q 033775 99 EEEQQQKKEEADK 111 (112)
Q Consensus 99 ~~~~~~~k~~~~~ 111 (112)
++++||+|||-|+
T Consensus 477 kMskqEvK~E~Ke 489 (609)
T PRK12772 477 RMTKQEVKEEYKQ 489 (609)
T ss_pred CCCHHHHHHHHHh
Confidence 4667778877664
No 14
>COG5557 Polysulphide reductase [Energy production and conversion]
Probab=20.68 E-value=39 Score=29.56 Aligned_cols=63 Identities=10% Similarity=0.252 Sum_probs=46.7
Q ss_pred hHhhcCCCCCcceeecccccccccccccccc---------CCCCcccccccchhHHHhhhhhhhhhheeec----cchh
Q 033775 5 KTFWNSPMGPKTTHFWGPAFNWGLPFAAFLD---------TKKPPELISGSMTGVMCVYSALCMRFAWMVQ----PRNL 70 (112)
Q Consensus 5 ~~~~~~paGpkTvhFWgP~~kWgl~iA~l~D---------~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~----P~Ny 70 (112)
+.-|.+--+|-+.|||. ++=|.+|++|.+= +.++-..| .+.+++.+.|..+-||-+.|. |.||
T Consensus 267 ~eala~vF~~~~g~Fls-v~Fwl~vl~g~a~pl~ll~~pk~~nd~r~l--~~a~~l~vf~~~~egwrl~i~gqv~~~n~ 342 (401)
T COG5557 267 REALALVFLPTAGDFLS-VMFWLEVLLGMAFPLVLLRVPKLRNDSRML--FLAALLAVFGVFCEGWRLTISGQVVAFNY 342 (401)
T ss_pred HHHHHHhhcccchhHHH-HHHHHHHHHhcccceEEEEccccccceeee--eHHHHHHHHHHHhhcEEEEeeeEEecccc
Confidence 44455666788999999 8889999997543 22333333 678899999999999988877 6665
No 15
>PF14246 TetR_C_7: AefR-like transcriptional repressor, C-terminal region; PDB: 3BHQ_B 3CDL_A.
Probab=20.58 E-value=1.9e+02 Score=16.79 Aligned_cols=44 Identities=11% Similarity=-0.114 Sum_probs=24.0
Q ss_pred eccchhhhhhhhhhhhhHHHHHHHHHHhccccchHHHHHHhhHh
Q 033775 65 VQPRNLHLLACHASNESVQLYQLSRWAMAPRSLEEEEQQQKKEE 108 (112)
Q Consensus 65 I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~~~~~~~~~~~~~~k~~ 108 (112)
+...|-.+++.++..-+.+..+.-+.+.-....+.+|.++..++
T Consensus 3 L~~~Dp~~AA~qf~~l~~g~~~~~~llg~~~~~s~~e~~~~v~~ 46 (55)
T PF14246_consen 3 LRIDDPELAAEQFLGLLKGDLFWPALLGLAPPPSAEEIERIVES 46 (55)
T ss_dssp B-SSSHHHHHHHHHHHHHHHHCHHHHHHTS----HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhHHHHHHHhCCCCCcCHHHHHHHHHH
Confidence 34456667777777666666666666665555555555554443
No 16
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=20.55 E-value=37 Score=21.97 Aligned_cols=25 Identities=12% Similarity=-0.040 Sum_probs=21.1
Q ss_pred CcccccccchhHHHhhhhhhhhhhe
Q 033775 39 PPELISGSMTGVMCVYSALCMRFAW 63 (112)
Q Consensus 39 ppe~IS~~qt~aL~~tg~iw~Rys~ 63 (112)
+.|.|-..-|.+||+-|..++=|++
T Consensus 26 ~~D~~LYr~Tm~L~~vG~~~~~~~l 50 (55)
T cd00928 26 VVDRILYRLTMALTVVGTGYSLYLL 50 (55)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHH
Confidence 3478888999999999999987765
Done!