Query 033775
Match_columns 112
No_of_seqs 102 out of 394
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 09:59:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_B Ribosomal protein S2; s 23.3 27 0.00092 26.9 1.1 34 14-47 158-200 (231)
2 3r8n_B 30S ribosomal protein S 18.4 40 0.0014 25.6 1.1 24 24-47 169-192 (218)
3 2vqe_B 30S ribosomal protein S 18.0 41 0.0014 26.3 1.1 23 24-46 178-200 (256)
4 3a5p_A Haemagglutinin I; lecti 15.9 36 0.0012 23.2 0.3 19 9-32 42-60 (104)
5 1vi6_A 30S ribosomal protein S 15.3 48 0.0016 25.2 0.9 24 23-46 134-157 (208)
6 3n91_A Uncharacterized protein 15.0 9.4 0.00032 31.1 -3.3 25 62-86 159-183 (323)
7 2xzm_B RPS0E; ribosome, transl 12.9 69 0.0024 24.8 1.2 23 24-46 134-156 (241)
8 3izc_v 60S acidic ribosomal pr 12.2 46 0.0016 22.7 0.0 8 103-110 90-97 (106)
9 3bch_A 40S ribosomal protein S 12.0 67 0.0023 25.2 0.9 24 23-46 170-193 (253)
10 2izx_A CAMP-dependent protein 11.7 89 0.0031 17.1 1.1 26 58-83 14-39 (41)
No 1
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=23.34 E-value=27 Score=26.85 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=26.8
Q ss_pred Ccceeeccc---------cccccccccccccCCCCcccccccc
Q 033775 14 PKTTHFWGP---------AFNWGLPFAAFLDTKKPPELISGSM 47 (112)
Q Consensus 14 pkTvhFWgP---------~~kWgl~iA~l~D~~rppe~IS~~q 47 (112)
|.-++.-.| ..+=+||+.|+.|.+-||+.|+..-
T Consensus 158 Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~I 200 (231)
T 3bbn_B 158 PDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISI 200 (231)
T ss_dssp CSEEEESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEEC
T ss_pred CCEEEEeCCccccHHHHHHHHhCCCEEEEecCCCCccceeEEe
Confidence 555555555 4689999999999999999997653
No 2
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=18.44 E-value=40 Score=25.63 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.3
Q ss_pred ccccccccccccCCCCcccccccc
Q 033775 24 FNWGLPFAAFLDTKKPPELISGSM 47 (112)
Q Consensus 24 ~kWgl~iA~l~D~~rppe~IS~~q 47 (112)
.+=+||+.||.|.+-||+.|+..-
T Consensus 169 ~~l~IP~IalvDTn~~p~~Vdy~I 192 (218)
T 3r8n_B 169 NNLGIPVFAIVDTNSDPDGVDFVI 192 (218)
T ss_dssp HHHTCCCEEECCSSSCCSSCSEEC
T ss_pred HHhCCCEEEEEeCcCCCcccceEe
Confidence 467899999999999999987543
No 3
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=17.98 E-value=41 Score=26.30 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.1
Q ss_pred ccccccccccccCCCCccccccc
Q 033775 24 FNWGLPFAAFLDTKKPPELISGS 46 (112)
Q Consensus 24 ~kWgl~iA~l~D~~rppe~IS~~ 46 (112)
.|=+||+.||.|.+-||+.|+..
T Consensus 178 ~~l~IPvIaivDTn~dp~~Vdyp 200 (256)
T 2vqe_B 178 RKLFIPVIALADTDSDPDLVDYI 200 (256)
T ss_dssp HHTTCCCEECCCTTSCGGGCSEE
T ss_pred HHcCCCEEEEecCCCCchhcceE
Confidence 46799999999999999998754
No 4
>3a5p_A Haemagglutinin I; lectin, sugar binding protein; 1.82A {Physarum polycephalum}
Probab=15.90 E-value=36 Score=23.22 Aligned_cols=19 Identities=37% Similarity=0.657 Sum_probs=12.7
Q ss_pred cCCCCCcceeeccccccccccccc
Q 033775 9 NSPMGPKTTHFWGPAFNWGLPFAA 32 (112)
Q Consensus 9 ~~paGpkTvhFWgP~~kWgl~iA~ 32 (112)
-+..||||+|= -|-|.+-+
T Consensus 42 fseigpktvhq-----swyitvhn 60 (104)
T 3a5p_A 42 FSEIGPKTVHQ-----SWYITVHN 60 (104)
T ss_dssp EECCSCCCSSS-----SEEEEEEE
T ss_pred ehhcCCceeee-----eEEEEEec
Confidence 46789999984 45555443
No 5
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=15.29 E-value=48 Score=25.16 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.5
Q ss_pred cccccccccccccCCCCccccccc
Q 033775 23 AFNWGLPFAAFLDTKKPPELISGS 46 (112)
Q Consensus 23 ~~kWgl~iA~l~D~~rppe~IS~~ 46 (112)
..|=+||+.||.|.+-||+.|+..
T Consensus 134 A~~l~IPvIalvDTn~~p~~Vd~~ 157 (208)
T 1vi6_A 134 ATAVGIPVVALCDSNNSSADVDLV 157 (208)
T ss_dssp HHHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHHhCCCEEEEeCCCCCccccCEE
Confidence 347899999999999999998654
No 6
>3n91_A Uncharacterized protein; domain of unknown function (DUF1735), structural genomics, J center for structural genomics, JCSG; HET: 2PE; 2.40A {Bacteroides ovatus}
Probab=15.01 E-value=9.4 Score=31.05 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.9
Q ss_pred heeeccchhhhhhhhhhhhhHHHHH
Q 033775 62 AWMVQPRNLHLLACHASNESVQLYQ 86 (112)
Q Consensus 62 s~~I~P~Ny~L~a~n~~~~~~q~~Q 86 (112)
.|.|+|++|.|+++...|--.|.|+
T Consensus 159 ~w~v~pkdyvLy~vky~N~y~G~Yl 183 (323)
T 3n91_A 159 DWSILPQNFVLYAVKYVNPWHGEYL 183 (323)
T ss_dssp GEEECCCSEEEEEEEEECTTCEEEE
T ss_pred ccccCCCcEEEEEEEEeccCceEEE
Confidence 3899999999999999998887774
No 7
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=12.91 E-value=69 Score=24.79 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.0
Q ss_pred ccccccccccccCCCCccccccc
Q 033775 24 FNWGLPFAAFLDTKKPPELISGS 46 (112)
Q Consensus 24 ~kWgl~iA~l~D~~rppe~IS~~ 46 (112)
.|=+||+.||.|.+-||+.|+..
T Consensus 134 ~~l~IPvIalvDTn~~p~~VDy~ 156 (241)
T 2xzm_B 134 SYVNIPVIALCDSDSPLAYVDVV 156 (241)
T ss_dssp TTTTCCEEECCCSSSCCTTCCEE
T ss_pred HHhCCCEEEEecCCCCcccccEE
Confidence 47899999999999999988643
No 8
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=12.21 E-value=46 Score=22.74 Aligned_cols=8 Identities=38% Similarity=0.651 Sum_probs=0.0
Q ss_pred HHhhHhhh
Q 033775 103 QQKKEEAD 110 (112)
Q Consensus 103 ~~~k~~~~ 110 (112)
++.|||++
T Consensus 90 ee~~EEsd 97 (106)
T 3izc_v 90 EEAAEESD 97 (106)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33444444
No 9
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=11.96 E-value=67 Score=25.16 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.4
Q ss_pred cccccccccccccCCCCccccccc
Q 033775 23 AFNWGLPFAAFLDTKKPPELISGS 46 (112)
Q Consensus 23 ~~kWgl~iA~l~D~~rppe~IS~~ 46 (112)
..|=+||+.||.|.+-||+.|+..
T Consensus 170 A~~lgIPvIalvDTn~dp~~VDy~ 193 (253)
T 3bch_A 170 ASYVNLPTIALCNTDSPLRYVDIA 193 (253)
T ss_dssp HHHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHHhCCCEEEEEcCCCCcccCceE
Confidence 347899999999999999988644
No 10
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=11.73 E-value=89 Score=17.10 Aligned_cols=26 Identities=15% Similarity=-0.019 Sum_probs=20.8
Q ss_pred hhhhheeeccchhhhhhhhhhhhhHH
Q 033775 58 CMRFAWMVQPRNLHLLACHASNESVQ 83 (112)
Q Consensus 58 w~Rys~~I~P~Ny~L~a~n~~~~~~q 83 (112)
++|-.+.-+|.|..-|+.+.|....+
T Consensus 14 ~~~~vl~~qP~di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 14 YTVEVLRQQPPDLVEFAVEYFTRLRE 39 (41)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhh
Confidence 56777888999999999998876543
Done!