Query 033775
Match_columns 112
No_of_seqs 102 out of 394
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 09:59:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033775.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033775hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gy9b1 c.23.15.1 (B:8-225) Ri 18.5 19 0.0014 25.3 1.1 33 14-46 150-191 (218)
2 d2uubb1 c.23.15.1 (B:7-240) Ri 13.9 25 0.0019 25.0 0.8 22 25-46 173-194 (234)
3 d2e74f1 f.23.25.1 (F:1-32) Pet 12.8 40 0.0029 17.4 1.2 16 48-63 7-22 (32)
4 d1v54j_ f.23.4.1 (J:) Mitochon 10.9 16 0.0012 21.5 -0.9 24 40-63 27-50 (58)
5 d2i76a1 a.100.1.10 (A:155-257) 9.1 93 0.0068 19.2 2.4 28 70-97 4-31 (103)
6 d2pv4a1 a.286.1.1 (A:1-144) Un 8.7 49 0.0035 22.5 0.8 21 73-93 70-90 (144)
7 d1vi6a_ c.23.15.1 (A:) Ribosom 7.8 57 0.0042 22.4 0.9 22 24-45 130-151 (193)
8 d1v95a_ c.51.1.1 (A:) Nuclear 6.9 46 0.0033 22.3 -0.1 39 35-75 39-77 (130)
9 d2oiea1 a.204.1.2 (A:21-122) X 6.8 95 0.0069 18.9 1.6 27 66-95 32-58 (102)
10 d2q7sa1 c.56.5.9 (A:10-289) N- 5.6 1.1E+02 0.0078 21.1 1.4 23 25-47 59-85 (280)
No 1
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}
Probab=18.46 E-value=19 Score=25.27 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=25.8
Q ss_pred Ccceeecccc---------ccccccccccccCCCCccccccc
Q 033775 14 PKTTHFWGPA---------FNWGLPFAAFLDTKKPPELISGS 46 (112)
Q Consensus 14 pkTvhFWgP~---------~kWgl~iA~l~D~~rppe~IS~~ 46 (112)
|.-++.-.|. .+=+||+.||.|.+-+|+.|+.+
T Consensus 150 Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~dp~~idyp 191 (218)
T d2gy9b1 150 PDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFV 191 (218)
T ss_dssp CCEEEESCTTTTHHHHHHHHHTTCCEEECCCSSSCGGGCTEE
T ss_pred CceeeeccccccHHHHHHHHHcCCCEEEEeeCCCCCccCcee
Confidence 5556665554 36789999999999999999754
No 2
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]}
Probab=13.89 E-value=25 Score=24.96 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.2
Q ss_pred cccccccccccCCCCccccccc
Q 033775 25 NWGLPFAAFLDTKKPPELISGS 46 (112)
Q Consensus 25 kWgl~iA~l~D~~rppe~IS~~ 46 (112)
+=+||+-||.|.+-+|+.|+.+
T Consensus 173 ~l~IPvIaivDTn~dp~~vdyp 194 (234)
T d2uubb1 173 KLFIPVIALADTDSDPDLVDYI 194 (234)
T ss_dssp HHTCCEEEEECTTSCGGGCSEE
T ss_pred hhCCCEEEEeecCCCccCCcEE
Confidence 6789999999999999998653
No 3
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.84 E-value=40 Score=17.45 Aligned_cols=16 Identities=0% Similarity=0.196 Sum_probs=13.3
Q ss_pred hhHHHhhhhhhhhhhe
Q 033775 48 TGVMCVYSALCMRFAW 63 (112)
Q Consensus 48 t~aL~~tg~iw~Rys~ 63 (112)
.+||..+|+||.-|.+
T Consensus 7 ~aa~lsfglifvgwgl 22 (32)
T d2e74f1 7 YAALLSFGLIFVGWGL 22 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhHH
Confidence 5788999999988764
No 4
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.87 E-value=16 Score=21.51 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=19.8
Q ss_pred cccccccchhHHHhhhhhhhhhhe
Q 033775 40 PELISGSMTGVMCVYSALCMRFAW 63 (112)
Q Consensus 40 pe~IS~~qt~aL~~tg~iw~Rys~ 63 (112)
+|.|-..-|.+||+-|.+++=|++
T Consensus 27 ~D~~LYr~Tm~L~~~G~~~s~~~l 50 (58)
T d1v54j_ 27 TDNILYRVTMTLCLGGTLYSLYCL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778889999999999887764
No 5
>d2i76a1 a.100.1.10 (A:155-257) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}
Probab=9.10 E-value=93 Score=19.22 Aligned_cols=28 Identities=39% Similarity=0.287 Sum_probs=19.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhccccc
Q 033775 70 LHLLACHASNESVQLYQLSRWAMAPRSL 97 (112)
Q Consensus 70 y~L~a~n~~~~~~q~~Ql~R~~~~~~~~ 97 (112)
|-+.+|.++|.++.++.+...+--.-.+
T Consensus 4 YH~aAv~asNf~~~l~~~a~~l~~~~gl 31 (103)
T d2i76a1 4 YHLAAVIASNFPVALAYLSKRIYTLLGL 31 (103)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHcCC
Confidence 6677888888888777776655444444
No 6
>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622 {Shewanella amazonensis [TaxId: 60478]}
Probab=8.69 E-value=49 Score=22.53 Aligned_cols=21 Identities=24% Similarity=-0.015 Sum_probs=17.4
Q ss_pred hhhhhhhhhHHHHHHHHHHhc
Q 033775 73 LACHASNESVQLYQLSRWAMA 93 (112)
Q Consensus 73 ~a~n~~~~~~q~~Ql~R~~~~ 93 (112)
.-.|.+....|.+|+.|-.+-
T Consensus 70 eqFH~~~~anq~~~~~~v~qe 90 (144)
T d2pv4a1 70 CVFHGFYLANAWIQLSIVARD 90 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999996543
No 7
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.76 E-value=57 Score=22.45 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.0
Q ss_pred ccccccccccccCCCCcccccc
Q 033775 24 FNWGLPFAAFLDTKKPPELISG 45 (112)
Q Consensus 24 ~kWgl~iA~l~D~~rppe~IS~ 45 (112)
.|=+||+.||.|.+-+|..|+.
T Consensus 130 ~~l~IPvI~ivDTn~~p~~vdy 151 (193)
T d1vi6a_ 130 TAVGIPVVALCDSNNSSADVDL 151 (193)
T ss_dssp HHTTCCEEEEECTTCCCTTCSE
T ss_pred HHcCCCeeeEeccCCCCcccce
Confidence 3678999999999999999854
No 8
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.85 E-value=46 Score=22.31 Aligned_cols=39 Identities=18% Similarity=0.026 Sum_probs=23.9
Q ss_pred cCCCCcccccccchhHHHhhhhhhhhhheeeccchhhhhhh
Q 033775 35 DTKKPPELISGSMTGVMCVYSALCMRFAWMVQPRNLHLLAC 75 (112)
Q Consensus 35 D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~ 75 (112)
||=-|.+.+++.+. |.=.+--=+=||++|+|+|..+=+|
T Consensus 39 d~lf~n~dv~l~~a--L~~vs~~G~~faIlVt~qn~~~~S~ 77 (130)
T d1v95a_ 39 DLIFLNTEVSLSQA--LEDVSRGGSPFAIVITQQHQIHRSC 77 (130)
T ss_dssp EEEECTTSSCHHHH--HHHHHHHTCSEEEEECHHHHHHTEE
T ss_pred EEEecCCcccHHHH--HHHHHhCCCceEEEEeccchhhcce
Confidence 44445555555443 3333333345889999999988776
No 9
>d2oiea1 a.204.1.2 (A:21-122) XTP3-transactivated gene A protein homolog RS21-C6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.84 E-value=95 Score=18.89 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=15.4
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHhccc
Q 033775 66 QPRNLHLLACHASNESVQLYQLSRWAMAPR 95 (112)
Q Consensus 66 ~P~Ny~L~a~n~~~~~~q~~Ql~R~~~~~~ 95 (112)
+|+|..+. ++.++.=+...+|+.....
T Consensus 32 ~Pknla~~---L~~EaGEL~e~~qw~~~~~ 58 (102)
T d2oiea1 32 QPRNLLLA---LVGEVGELAELFQWKSDTE 58 (102)
T ss_dssp CHHHHHHH---HHHHHHHHHHHHHTCCCCS
T ss_pred CHHHHHHH---HHHHHHHHHHHHHhhcccc
Confidence 68887654 3444555556666655443
No 10
>d2q7sa1 c.56.5.9 (A:10-289) N-formylglutamate amidohydrolase {Ralstonia eutropha [TaxId: 106590]}
Probab=5.60 E-value=1.1e+02 Score=21.13 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=15.6
Q ss_pred cccccccc----cccCCCCcccccccc
Q 033775 25 NWGLPFAA----FLDTKKPPELISGSM 47 (112)
Q Consensus 25 kWgl~iA~----l~D~~rppe~IS~~q 47 (112)
...+++|. +.|+||+++.++..|
T Consensus 59 ~~~~v~a~~SR~vIDlNR~~~d~d~~~ 85 (280)
T d2q7sa1 59 GGTLLAATFPRVYIDPNRMLDDIDPAQ 85 (280)
T ss_dssp TCEEEEESSCTTTCCTTSCTTCCCGGG
T ss_pred CCcEEEecCcceeeecccCcccccccc
Confidence 33445555 569999999876654
Done!