BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033778
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 72/113 (63%), Gaps = 6/113 (5%)
Query: 1 MGIEKQILTPGN-GPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSV 59
MG++ L G+ P AGQ VH TG +G + F S++ G+ PF F +G+G V
Sbjct: 1 MGVQVVTLAAGDEATYPKAGQVAVVHYTGTLADGKV---FDSSRTRGK-PFRFTVGRGEV 56
Query: 60 IKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
I+GWDEGV M VG+ A+L CSPDYAYG+ G P I PN+ L F++++L+VE
Sbjct: 57 IRGWDEGVAQMSVGQRAKLVCSPDYAYGSRGHPGV-IPPNATLTFDVELLRVE 108
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 75/113 (66%), Gaps = 6/113 (5%)
Query: 1 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSV 59
MG++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK V
Sbjct: 2 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEV 57
Query: 60 IKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
I+GW+EGV M VG+ A+L SPDYAYGA G P I P++ L F++++L++E
Sbjct: 58 IRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKLE 109
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 75/112 (66%), Gaps = 6/112 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P AGQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+GW+EGV M VG+ A+L SPDYAYGA G P I P++ L F++++L++E
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKLE 107
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 73/112 (65%), Gaps = 6/112 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+E + ++PG+G P GQ VH TG +NG +KF S++D +PF F+IGK VI
Sbjct: 1 GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNG---KKFDSSRD-RNKPFKFRIGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
KG++EG M +G+ A+L C+PD AYGA G P I PN+ L F++++L +E
Sbjct: 57 KGFEEGAAQMSLGQRAKLTCTPDVAYGATGHPGV-IPPNATLIFDVELLNLE 107
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 111
GWDEGV GM+VG V RL P YGA G I PN+ L FE+++L V
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGV-IPPNATLVFEVELLDV 209
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 74/112 (66%), Gaps = 6/112 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFVLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+GW+EGV M VG+ A+L SPDYAYGA G P I PN+ L F++++L++E
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPNATLIFDVELLKLE 107
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFGSSKDR-NDPFAFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 111
GWDEGV GM+VG V RL P YGA G I PN+ L FE+++L V
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPPQLGYGARG-AGGVIPPNATLVFEVELLDV 209
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 88.2 bits (217), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 9 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGHVIK 64
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 111
GWDEGV GM+VG V RL P YGA G I PN+ L FE+++L V
Sbjct: 65 GWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGV-IPPNATLVFEVELLDV 113
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 88.2 bits (217), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 111
GWDEGV GM+VG V RL P YGA G I PN+ L FE+++L V
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPPQLGYGARG-AGGVIPPNATLVFEVELLDV 209
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 111
GWDEGV GM+VG V RL P YGA G I PN+ L FE+++L V
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPPQLGYGARG-AGGVIPPNATLVFEVELLDV 209
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 29 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 84
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 111
GWDEGV GM+VG V RL P YGA G I PN+ L FE+++L V
Sbjct: 85 GWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGV-IPPNATLVFEVELLDV 133
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 74/112 (66%), Gaps = 6/112 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDK-NKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+GW+EGV M VG+ A+L SPDYAYGA G P I P++ L F++++L++E
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYAYGATGVPGI-IPPHATLVFDVELLKLE 107
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 74/112 (66%), Gaps = 6/112 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+GW+EGV M VG+ A+L SPDYAYGA G P I P++ L F++++L++E
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKLE 107
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFEFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 111
GWDEGV GM+VG V RL P YGA G I PN+ L FE+++L V
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPPQLGYGARG-AGGVIPPNATLVFEVELLDV 209
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 13 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 68
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 111
GWDEGV GM+VG V RL P YGA G I PN+ L FE+++L V
Sbjct: 69 GWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGV-IPPNATLVFEVELLDV 117
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 6/112 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+GW EGV M VG+ A+L SPDYAYGA G P I P++ L F++++L++E
Sbjct: 57 RGWQEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKLE 107
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 6/112 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+GW EGV M VG+ A+L SPDYAYGA G P I P++ L F++++L++E
Sbjct: 57 RGWAEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKLE 107
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 73/111 (65%), Gaps = 6/111 (5%)
Query: 3 IEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI+
Sbjct: 2 VQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVIR 57
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
GW+EGV M VG+ A+L SPDYAYGA G P I P++ L F++++L++E
Sbjct: 58 GWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKLE 107
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 73/112 (65%), Gaps = 6/112 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +K S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKMDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+GW+EGV M VG+ A+L SPDYAYGA G P I P++ L F++++L++E
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKLE 107
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 74/112 (66%), Gaps = 6/112 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+G++EGV M VG+ A+L SPDYAYGA G P I P++ L F++++L++E
Sbjct: 57 RGFEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKLE 107
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 73/112 (65%), Gaps = 6/112 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +K S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKVDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+GW+EGV M VG+ A+L SPDYAYGA G P I P++ L F++++L++E
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKLE 107
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 73/112 (65%), Gaps = 6/112 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+G +EGV M VG+ A+L SPDYAYGA G P I P++ L F++++L++E
Sbjct: 57 RGLEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKLE 107
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 66/111 (59%), Gaps = 8/111 (7%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 91
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYG-AGGFPQWGIQPNSVLDFEIQVLQ 110
K WD GV M+ GE+ L C P+YAYG AG P+ I N+ L FEI++L
Sbjct: 92 KAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK--IPSNATLFFEIELLD 140
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 66/111 (59%), Gaps = 8/111 (7%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 91
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYG-AGGFPQWGIQPNSVLDFEIQVLQ 110
K WD GV M+ GE+ L C P+YAYG AG P+ I N+ L FEI++L
Sbjct: 92 KAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK--IPSNATLFFEIELLD 140
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 69/110 (62%), Gaps = 6/110 (5%)
Query: 3 IEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
+EK++LTPG+G KP AG+KVTVH G +G ++F S++ G+ PF F +G G VIK
Sbjct: 26 LEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDG---KQFDSSRSRGK-PFQFTLGAGEVIK 81
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 111
GWD+GV M +GE A AYG G+P I P + L FE+++L V
Sbjct: 82 GWDQGVATMTLGEKALFTIPYQLAYGERGYPPV-IPPKATLVFEVELLAV 130
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 66/111 (59%), Gaps = 8/111 (7%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 20 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 75
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYG-AGGFPQWGIQPNSVLDFEIQVLQ 110
K WD GV M+ GE+ L C P+YAYG AG P+ I N+ L FEI++L
Sbjct: 76 KAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK--IPSNATLFFEIELLD 124
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 66/111 (59%), Gaps = 8/111 (7%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 20 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 75
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYG-AGGFPQWGIQPNSVLDFEIQVLQ 110
K WD GV M+ GE+ L C P+YAYG AG P+ I N+ L FEI++L
Sbjct: 76 KAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK--IPSNATLFFEIELLD 124
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 66/111 (59%), Gaps = 8/111 (7%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 91
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYG-AGGFPQWGIQPNSVLDFEIQVLQ 110
K WD GV M+ GE+ L C P+YAYG AG P+ I N+ L FEI++L
Sbjct: 92 KAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK--IPSNATLFFEIELLD 140
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 2 GIEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKG--- 57
GI ++ G G P G V +H G + + +D F +G+G
Sbjct: 151 GIIRRTKRKGEGYSNPNEGATVEIHLEGR-----CGGRMFDCRD-----VAFTVGEGEDH 200
Query: 58 SVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+ G D+ + MQ E L P Y +G G P++GI+PN+ L +E+ + E
Sbjct: 201 DIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFE 255
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 6/110 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G + P+ G +V VH TG+ +G KF S+ D + F+F +GKG VI
Sbjct: 31 GVLKVIKREGTGTETPMIGDRVFVHYTGWLLDG---TKFDSSLD-RKDKFSFDLGKGEVI 86
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQ 110
K WD V M+VGE+ R+ C P+YAYG+ G P I PN+ L FE+++ +
Sbjct: 87 KAWDIAVATMKVGELCRITCKPEYAYGSAGSPP-KIPPNATLVFEVELFE 135
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 81.6 bits (200), Expect = 1e-16, Method: Composition-based stats.
Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 8/110 (7%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 32 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 87
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYG-AGGFPQWGIQPNSVLDFEIQVL 109
K WD GV M+ GE+ L C P+YAYG AG P+ I N+ L FEI++L
Sbjct: 88 KAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPK--IPSNATLFFEIELL 135
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 2 GIEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS-- 58
GI ++ G G P G V +H G + + +D F +G+G
Sbjct: 147 GIIRRTKRKGEGYSNPNEGATVEIHL-----EGRCGGRMFDCRD-----VAFTVGEGEDH 196
Query: 59 -VIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+ G D+ + MQ E L P Y +G G P++GI+PN+ L +E+ + E
Sbjct: 197 DIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFE 251
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 6/110 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G + P+ G +V VH TG+ +G KF S+ D + F+F +GKG VI
Sbjct: 32 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDG---TKFDSSLD-RKDKFSFDLGKGEVI 87
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQ 110
K WD + M+VGEV + C P+YAYG+ G P I PN+ L FE+++ +
Sbjct: 88 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPP-KIPPNATLVFEVELFE 136
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 64/106 (60%), Gaps = 6/106 (5%)
Query: 8 LTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEG 66
++PG+G P G VT+H TG +NG QKF S+ D G PF IG G VIKGWD G
Sbjct: 13 ISPGDGATFPKTGDLVTIHYTGTLENG---QKFDSSVDRGS-PFQCNIGVGQVIKGWDVG 68
Query: 67 VMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+ + VGE ARL YAYG GFP I PNS L F++++L+V
Sbjct: 69 IPKLSVGEKARLTIPGPYAYGPRGFPGL-IPPNSTLVFDVELLKVN 113
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 80.1 bits (196), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 8/110 (7%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + G+G + P+ G +V VH G NG +KF S+ D +PF F IGKG VI
Sbjct: 32 GVLKIVKRVGHGEETPMIGDRVYVHYNGKLANG---KKFDSSHDR-NEPFVFSIGKGQVI 87
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGA-GGFPQWGIQPNSVLDFEIQVL 109
K WD GV M+ GE+ L C P+YAYGA G P+ I N+ L FE+++L
Sbjct: 88 KAWDIGVATMKKGEICHLLCKPEYAYGATGSLPK--IPSNATLFFEVELL 135
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 2 GIEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS-- 58
GI ++ G G P G +V +H G + + +D F +G+G
Sbjct: 147 GIIRRTKRRGEGYSNPNEGARVQIHL-----EGRCGGRVFDCRD-----VAFTVGEGEDH 196
Query: 59 -VIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+ G D+ + MQ E L P Y +G G P++GI+PN+ L +E+ + E
Sbjct: 197 DIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFE 251
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 6/110 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G + P+ G +V VH TG+ +G KF S+ D + F+F +GKG VI
Sbjct: 36 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDG---TKFDSSLD-RKDKFSFDLGKGEVI 91
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQ 110
K WD + M+VGEV + C P+YAYG+ G P I PN+ L FE+++ +
Sbjct: 92 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPP-KIPPNATLVFEVELFE 140
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 6/110 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G + P+ G +V VH TG+ +G KF S+ D + F+F +GKG VI
Sbjct: 52 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDG---TKFDSSLD-RKDKFSFDLGKGEVI 107
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQ 110
K WD + M+VGEV + C P+YAYG+ G P I PN+ L FE+++ +
Sbjct: 108 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPP-KIPPNATLVFEVELFE 156
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 2 GIEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
GI ++I T G G KP G V V GY K+ Q+ F+IG+G +
Sbjct: 169 GIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQR----------ELRFEIGEGENL 218
Query: 61 K---GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
G + + M+ GE + + P YA+G+ G ++ I PN+ L +E+ + E
Sbjct: 219 DLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFE 273
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 70/110 (63%), Gaps = 5/110 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 9 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 64
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 111
GWDEGV GM+VG V RL P YGAGG I PN+ L FE+++L V
Sbjct: 65 GWDEGVQGMKVGGVRRLTIPPQLGYGAGGAGGV-IPPNATLVFEVELLDV 113
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 24 VHC--TGYGKNG---DLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
VHC TG ++G D + + + K +P +F++G G VI+GWDE ++ M GE ARL
Sbjct: 23 VHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARL 82
Query: 79 RCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
P++AYG G P I PN+ L FE++++ ++
Sbjct: 83 EIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID 116
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 2 GIEKQILTPGNGP-KPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G KP G V VH G +NG KF S++D G Q F+F +G+G+VI
Sbjct: 15 GVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENG---TKFDSSRDRGDQ-FSFNLGRGNVI 70
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQ 110
KGWD GV M GEVA DY YG G P I + L FE+++ +
Sbjct: 71 KGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPP-KIPGGATLIFEVELFE 119
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 24 VHC--TGYGKNG---DLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
VHC TG +G D + + S K +P +F++G G VI+GWDE ++ M GE ARL
Sbjct: 26 VHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARL 85
Query: 79 RCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
P++AYG G P I PN+ L FE++++ ++
Sbjct: 86 EIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDID 119
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 16 PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEV 75
P G +V VH TG +G +KF S++D F F++G+G VIKGWD+G+ M+ GE
Sbjct: 27 PEVGDEVEVHYTGTLLDG---KKFDSSRD-RDDTFKFKLGQGQVIKGWDQGIKTMKKGEN 82
Query: 76 ARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVL 109
A P+ AYG G P I N+ L F++++L
Sbjct: 83 ALFTIPPELAYGESGSPP-TIPANATLQFDVELL 115
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 3 IEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
I K++L G +P G VTV TG ++G + F Q+PF F+ + +VI+
Sbjct: 246 ILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTV---FLKKGHDEQEPFEFKTDEEAVIE 302
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGI-QPNSVLDFEIQVL 109
G D V+ M+ GEVA + P+YAYG+ Q I PNS + +E++++
Sbjct: 303 GLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELV 351
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 16 PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEV 75
P G +V VH TG +G +KF S++D F F++G+G VIKGWD+G+ M+ GE
Sbjct: 43 PEVGDEVEVHYTGTLLDG---KKFDSSRD-RDDTFKFKLGQGQVIKGWDQGIKTMKKGEN 98
Query: 76 ARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVL 109
A P+ AYG G P I N+ L F++++L
Sbjct: 99 ALFTIPPELAYGESGSPP-TIPANATLQFDVELL 131
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 3 IEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
I K++L G +P G VTV TG ++G + F Q+PF F+ + +VI+
Sbjct: 262 ILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTV---FLKKGHDEQEPFEFKTDEEAVIE 318
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGI-QPNSVLDFEIQVL 109
G D V+ M+ GEVA + P+YAYG+ Q I PNS + +E++++
Sbjct: 319 GLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELV 367
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 2 GIEKQILTPGNGPK---PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS 58
G+ K IL G G + P G +VTVH G ++ S K + + PF F +G+G
Sbjct: 16 GVVKTILRKGEGGEENAPKKGNEVTVHYVGKLES---SGKVFDSSRERNVPFKFHLGQGE 72
Query: 59 VIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVL 109
VIKGWD V M E +R Y YG G + I NSVL FEI+++
Sbjct: 73 VIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGE-SIPGNSVLIFEIELI 122
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 11 GNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMG- 69
G GP+ V GQ + H G +NG + F S+ + G+ P TF+IG G VIKGWD+G++G
Sbjct: 22 GYGPEAVKGQLIKAHYVGKLENGKV---FDSSYNRGK-PLTFRIGVGEVIKGWDQGILGS 77
Query: 70 -----MQVGEVARLRCSPDYAYGAGGFPQWG----IQPNSVLDFEIQVL 109
M G LR P+ AYG G G I P SVL F+I+ +
Sbjct: 78 DGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 15 KPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGE 74
K G + +H TG ++G + + P QPF F +G G VIKGWD+G++GM GE
Sbjct: 5 KSRKGDVLHMHYTGKLEDGT----EFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGE 60
Query: 75 VARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
+L + YG G P I + L FE+++L++E
Sbjct: 61 KRKLVIPSELGYGERGAPP-KIPGGATLVFEVELLKIE 97
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 2 GIEKQILTPGNGPK---PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS 58
G+ K IL G+ + P G +VTVH G ++ + K + + PF F + +G
Sbjct: 17 GVIKTILKKGDEGEENIPKKGNEVTVHYVGKLES---TGKVFDSSFDRNVPFKFHLEQGE 73
Query: 59 VIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVL 109
VIKGWD V M+ E +R Y YG G + I NSVL FEI++L
Sbjct: 74 VIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGE-SIPGNSVLLFEIELL 123
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 2 GIEKQILTPGNGPK---PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS 58
G+ K IL G+ + P G +VTVH G ++ + K + + PF F + +G
Sbjct: 17 GVIKTILKKGDEGEENIPKKGNEVTVHYVGKLES---TGKVFDSSFDRNVPFKFHLEQGE 73
Query: 59 VIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVL 109
VIKGWD V M+ E +R Y YG G + I NSVL FEI++L
Sbjct: 74 VIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGE-SIPGNSVLLFEIELL 123
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 15 KPVAGQKVTVHCTGY-GKNGDLSQKFWST-KDPGQQPFTFQIGKGSVIKGWDEGVMGMQV 72
K G + VH GY K+G L F ST K QP F +G +KGWD+G+ GM V
Sbjct: 28 KTKGGDLMLVHYEGYLEKDGSL---FHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCV 84
Query: 73 GEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
GE +L P YG G + I P S L F I +L++
Sbjct: 85 GEKRKLIIPPALGYGKEG--KGKIPPESTLIFNIDLLEIR 122
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G+ K ++ G G V V +GY ++ D + + + + P ++G+ +
Sbjct: 27 GVLKDVIREGAGDLVAPDASVLVKYSGYLEHMD---RPFDSNYFRKTPRLMKLGEDITLW 83
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQ 110
G + G++ M+ GE+AR P+YAYG G P I PN+ + FEI++L
Sbjct: 84 GMELGLLSMRRGELARFLFKPNYAYGTLGCPPL-IPPNTTVLFEIELLD 131
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
GI LTPG GPKP A +V V G +G + D QP F++ SVI
Sbjct: 118 GILMTELTPGTGPKPDANGRVEVRYVGRLPDGKIF-------DQSTQPQWFRLD--SVIS 168
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 111
GW + M G RL D AYGA G I P + L FEI+++ V
Sbjct: 169 GWTSALQNMPTGAKWRLVIPSDQAYGAEGAGDL-IDPFTPLVFEIELIAV 217
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 3 IEKQILTPG--NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
+ K+ L PG +PV GQ VTVH +NG Q+ + F +G VI
Sbjct: 45 LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE--------EPELVFTLGDCDVI 96
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQV 108
+ D V M VGE A + Y YG G I P++ L E+ +
Sbjct: 97 QALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 144
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 3 IEKQILTPG--NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
+ K+ L PG +PV GQ VTVH +NG Q+ + F +G VI
Sbjct: 19 LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE--------EPELVFTLGDCDVI 70
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQV 108
+ D V M VGE A + Y YG G I P++ L E+ +
Sbjct: 71 QALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 118
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G+ Q++ G G P V V+ G +G ++F ++ G+ P +F++ VI
Sbjct: 122 GLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDG---KEFDNSYTRGE-PLSFRLD--GVIP 175
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
GW EG+ ++ G +L P+ AYG G P GI PNS L F++++L V+
Sbjct: 176 GWTEGLKNIKKGGKIKLVIPPELAYGKAGVP--GIPPNSTLVFDVELLDVK 224
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G+ Q++ G G P V V+ G +G ++F ++ G+ P +F++ VI
Sbjct: 122 GLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDG---KEFDNSYTRGE-PLSFRLD--GVIP 175
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
GW EG+ ++ G +L P+ AYG G P GI PNS L F++++L V+
Sbjct: 176 GWTEGLKNIKKGGKIKLVIPPELAYGKAGVP--GIPPNSTLVFDVELLDVK 224
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 2 GIEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
GI ++I T G G KP G V V GY K+ K Q+ F+IG+G +
Sbjct: 26 GIIRRIQTRGEGYAKPNEGAIVEVALEGYYKD----------KLFDQRELRFEIGEGENL 75
Query: 61 K---GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
G + + M+ GE + + P YA+G+ G ++ I PN+ L +E+ + E
Sbjct: 76 DLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFE 130
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 3 IEKQILTPG--NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
+ K+ L PG +PV GQ VTVH +NG Q+ + F +G VI
Sbjct: 13 LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE--------EPELVFTLGDCDVI 64
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQV 108
+ D V M VGE A + Y YG G + I P++ L E+ +
Sbjct: 65 QALDLSVPLMDVGETAMVTADSKYCYGPQGRSPY-IPPHAALCLEVTL 111
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 3 IEKQILTPG--NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
+ K+ L PG +PV GQ VTVH +NG Q+ + F +G VI
Sbjct: 15 LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE--------EPELVFTLGDCDVI 66
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQV 108
+ D V M VGE A + Y YG G + I P++ L E+ +
Sbjct: 67 QALDLSVPLMDVGETAMVTADSKYCYGPQGRSPY-IPPHAALCLEVTL 113
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ +++ GNG KP VTV TG +G + F ST+ G +P TFQ+ + VI
Sbjct: 31 GLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTV---FDSTEKTG-KPATFQVSQ--VIP 84
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYG--AGGFPQWGIQPNSVLDFEIQVLQVE 112
GW E + M G + AYG + G P I PN L F+I ++ V+
Sbjct: 85 GWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGP---IGPNETLIFKIHLISVK 134
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ +++ GNG KP VTV TG +G + F ST+ G +P TFQ+ + VI
Sbjct: 107 GLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTV---FDSTEKTG-KPATFQVSQ--VIP 160
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYG--AGGFPQWGIQPNSVLDFEIQVLQVE 112
GW E + M G + AYG + G P I PN L F+I ++ V+
Sbjct: 161 GWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGP---IGPNETLIFKIHLISVK 210
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 14/115 (12%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ Q + G+G + P K VH TG ++G + F S+++ G+ P TF+ VI
Sbjct: 38 GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTV---FDSSRERGK-PTTFR--PNEVI 91
Query: 61 KGWDEGVMGMQVGEVARLRCSPDYAYGA---GGFPQWGIQPNSVLDFEIQVLQVE 112
KGW E + M+ G+ RL D AYG GG I P S L+F+++++ ++
Sbjct: 92 KGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGM----IPPYSPLEFDVELISIK 142
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 2 GIEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
GI ++I T G G KP G V V GY K+ Q+ F+IG+G +
Sbjct: 26 GIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQR----------ELRFEIGEGENL 75
Query: 61 K---GWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112
G + + + GE + + P YA+G+ G ++ I PN+ L +E+ + E
Sbjct: 76 DLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFE 130
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 3 IEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGK-GSVIK 61
+ KQI+ G+G KP +H + KN KF T QQP +GK +
Sbjct: 51 VSKQIIKEGHGSKPSKYSTCFLHYRAWTKNS--QHKFEDTWHE-QQPIELVLGKEKKELA 107
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYG-AGGFPQWGIQPNSVLDFEIQVL 109
G GV M+ GE A + + AYG G F + P + L +E++V+
Sbjct: 108 GLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVI 156
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 3 IEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGK-GSVIK 61
+ KQI+ G+G KP +H + KN KF T QQP +GK +
Sbjct: 51 VSKQIIKEGHGSKPSKYSTCFLHYRAWTKNS--QHKFEDTWHE-QQPIELVLGKEKKELA 107
Query: 62 GWDEGVMGMQVGEVARLRCSPDYAYGA-GGFPQWGIQPNSVLDFEIQVL 109
G GV M+ GE A + + AYG G F + P + L +E++V+
Sbjct: 108 GLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVI 156
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 44 DPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYG 87
D +P F +G+G +I+G++E V+ M+VG+ ++ + AYG
Sbjct: 39 DREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAYG 82
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 18 AGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVAR 77
+ V VH T +G ++ ST++ G+ P F++G S+ +G ++ ++G++VG+
Sbjct: 27 SNSAVLVHFTLKLDDGTTAE---STRNNGK-PALFRLGDASLSEGLEQHLLGLKVGDKTT 82
Query: 78 LRCSPDYAYG 87
PD A+G
Sbjct: 83 FSLEPDAAFG 92
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 46 GQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYG 87
++P F IG +I G ++ V+ Q+GE + +P+ AYG
Sbjct: 33 SKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYG 74
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 19/99 (19%)
Query: 19 GQKVTVHCTGY--GKNGDLSQKFWSTKD----PGQQ--PFTFQIGKGSVIKGWDEGVMGM 70
G+ V + GY GK D + + + K+ P P G+G V+ G DE ++ M
Sbjct: 5 GKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEM 64
Query: 71 QVGEVARLRCSPDYAYGA-----------GGFPQWGIQP 98
VGE + P+ A+G F + GI+P
Sbjct: 65 DVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKRGIKP 103
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 19 GQKVTVHCTGY--GKNGDLSQKFWSTKD----PGQQ--PFTFQIGKGSVIKGWDEGVMGM 70
G+ V + GY GK D + + + K+ P P G+G V+ G DE ++ M
Sbjct: 5 GKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEM 64
Query: 71 QVGEVARLRCSPDYAYG 87
VGE + P+ A+G
Sbjct: 65 DVGEEREVVLPPEKAFG 81
>pdb|3T0V|A Chain A, Unliganded Fluorogen Activating Protein M8vl
pdb|3T0W|A Chain A, Fluorogen Activating Protein M8vl In Complex With
Dimethylindole Red
pdb|3T0W|B Chain B, Fluorogen Activating Protein M8vl In Complex With
Dimethylindole Red
Length = 123
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%)
Query: 7 ILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEG 66
+LT GQKVT+ C+G N + + +W + PG P G +
Sbjct: 3 VLTQSPSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDR 62
Query: 67 VMGMQVGEVARLRCS 81
G + G A L S
Sbjct: 63 FSGSKSGTSASLAIS 77
>pdb|3T0X|A Chain A, Fluorogen Activating Protein M8vla4(S55p) In Complex
With Dimethylindole Red
pdb|3T0X|B Chain B, Fluorogen Activating Protein M8vla4(S55p) In Complex
With Dimethylindole Red
Length = 123
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQKVT+ C+G N + + +W + PG P G + G + G A L
Sbjct: 15 GQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRPSGVPDRFSGSKSGTSASL 74
Query: 79 RCS 81
S
Sbjct: 75 AIS 77
>pdb|1Q1J|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 Fab 447-52d In
Complex With V3 Peptide
pdb|1Q1J|M Chain M, Crystal Structure Analysis Of Anti-Hiv-1 Fab 447-52d In
Complex With V3 Peptide
Length = 215
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 20/91 (21%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDE------------- 65
GQKVT+ C+G N + W + PG P G G +
Sbjct: 15 GQKVTISCSGSSSNIGNNYVLWYQQFPGTAPKLLIYGNNKRPSGIPDRFSGSKSGTSATL 74
Query: 66 GVMGMQVGEVARLRC-------SPDYAYGAG 89
G+ G+Q G+ A C S D+ +G G
Sbjct: 75 GITGLQTGDEADYFCATWDSGLSADWVFGGG 105
>pdb|3C2A|L Chain L, Antibody Fab Fragment 447-52d In Complex With Ug1033
Peptide
pdb|3C2A|M Chain M, Antibody Fab Fragment 447-52d In Complex With Ug1033
Peptide
pdb|3GHB|L Chain L, Crystal Structure Of Anti-Hiv-1 Fab 447-52d In Complex
With V3 Peptide W2rw020
pdb|3GHB|M Chain M, Crystal Structure Of Anti-Hiv-1 Fab 447-52d In Complex
With V3 Peptide W2rw020
Length = 216
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 20/91 (21%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDE------------- 65
GQKVT+ C+G N + W + PG P G G +
Sbjct: 15 GQKVTISCSGSSSNIGNNYVLWYQQFPGTAPKLLIYGNNKRPSGIPDRFSGSKSGTSATL 74
Query: 66 GVMGMQVGEVARLRC-------SPDYAYGAG 89
G+ G+Q G+ A C S D+ +G G
Sbjct: 75 GITGLQTGDEADYFCATWDSGLSADWVFGGG 105
>pdb|2I24|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Pbla8 Variable Domain
pdb|2I25|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Pbla8 Variable Domain In Complex With
Lysozyme
pdb|2I25|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Pbla8 Variable Domain In Complex With
Lysozyme
Length = 121
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 18 AGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQ---------PFTFQIGKGSVIKGWDEGVM 68
G+ +T++C LS +W K PG + + + +GS K + +
Sbjct: 14 TGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGS--KSFSLRIN 71
Query: 69 GMQVGEVARLRCSPDYAYGA 88
+ V + RC P+ YG+
Sbjct: 72 DLTVKDSGTYRCKPESRYGS 91
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain
Length = 121
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 18 AGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP---------FTFQIGKGSVIKGWDEGVM 68
G+ +T++C N LS +W K G + + GS K + +
Sbjct: 14 TGESLTINCVLRDSNCALSSTYWYRKKSGSTNEESISKGGRYVETVNSGS--KSFSLRIN 71
Query: 69 GMQVGEVARLRCSPDYAYGA 88
+ V + RC P+ YG+
Sbjct: 72 DLTVEDSGTYRCKPESRYGS 91
>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human
Aryl-Hydrocarbon Receptor-Interacting Protein (Aip)
Length = 165
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 2 GIEKQILTPGNGPKP--VAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSV 59
GI+K+++ G G P G K T H + D ++ G+ P IGK
Sbjct: 11 GIQKRVIQEGRGELPDFQDGTKATFHYRTLHSD-DEGTVLDDSRARGK-PMELIIGKKFK 68
Query: 60 IKGWDEGVMGMQVGEVARLRCS 81
+ W+ V M+ GE+A+ C
Sbjct: 69 LPVWETIVCTMREGEIAQFLCD 90
>pdb|3MLW|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 1006-15d In Complex
With An Mn V3 Peptide
pdb|3MLW|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Fab 1006-15d In Complex
With An Mn V3 Peptide
Length = 215
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 21/92 (22%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQ+VT+ C+G N + + +W + PG P G + G + G A L
Sbjct: 15 GQRVTISCSGNSSNIENNYVYWYQQLPGSTPKLLIFRDDQRPSGVPDRFSGSKSGTSASL 74
Query: 79 RCS---------------------PDYAYGAG 89
S PDY +G G
Sbjct: 75 AISGLRSEDEADYYCASWDDSRGGPDYVFGTG 106
>pdb|4D9L|L Chain L, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
pdb|4D9L|M Chain M, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
pdb|4D9L|N Chain N, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
pdb|4D9L|O Chain O, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
Length = 215
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 19 GQKVTVHCTGYGKN-GDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVAR 77
GQ+VT+ CTG N G W + PG P G + G + G + G A
Sbjct: 15 GQRVTISCTGSSSNIGAHYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSAS 74
Query: 78 L 78
L
Sbjct: 75 L 75
>pdb|3MLY|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With A Ur29 V3 Peptide
pdb|3MLY|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With A Ur29 V3 Peptide
pdb|3MLZ|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With A Vi191 V3 Peptide
Length = 214
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDE------------- 65
GQKVT+ C+G N + W + PG P G +
Sbjct: 15 GQKVTISCSGSSSNIGNNMVSWYQQHPGTAPKLLIYENSKRPSGIPDRFSGSRSGTSATL 74
Query: 66 GVMGMQVGEVARLRCS 81
G++G+Q G+ A C+
Sbjct: 75 GIIGLQTGDEAEYYCA 90
>pdb|4G6F|L Chain L, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|D Chain D, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 215
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 8 LTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGV 67
LT G G+ VT+ C G + W K PGQ P GK + G +
Sbjct: 4 LTQETGVSVALGRTVTITCRGDSLRSHYAS--WYQKKPGQAPILLFYGKNNRPSGVPDRF 61
Query: 68 MGMQVGEVARLRCS 81
G G A L S
Sbjct: 62 SGSASGNRASLTIS 75
>pdb|3MLX|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With An Mn V3 Peptide
pdb|3MLX|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With An Mn V3 Peptide
Length = 211
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDE------------- 65
GQKVT+ C+G N + W + PG P G +
Sbjct: 14 GQKVTISCSGSSSNIGNNMVSWYQQHPGTAPKLLIYENSKRPSGIPDRFSGSRSGTSATL 73
Query: 66 GVMGMQVGEVARLRCS 81
G++G+Q G+ A C+
Sbjct: 74 GIIGLQTGDEAEYYCA 89
>pdb|2A9M|L Chain L, Structural Analysis Of A Tight-Binding Fluorescein-Scfv;
Apo Form
pdb|2A9M|M Chain M, Structural Analysis Of A Tight-Binding Fluorescein-Scfv;
Apo Form
pdb|2A9N|L Chain L, A Mutation Designed To Alter Crystal Packing Permits
Structural Analysis Of A Tight-Binding Fluorescein-Scfv
Complex
pdb|2A9N|M Chain M, A Mutation Designed To Alter Crystal Packing Permits
Structural Analysis Of A Tight-Binding Fluorescein-Scfv
Complex
Length = 110
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 6 QILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
+LT + GQKVT+ C+G N + W + PG+ P
Sbjct: 1 SVLTQPSSVSAAPGQKVTISCSGSTSNIGNNYVSWYQQHPGKAP 44
>pdb|2XQB|L Chain L, Crystal Structure Of Anti-Il-15 Antibody In Complex With
Human Il-15
Length = 211
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ+VT+ C+G N + +W + PG P
Sbjct: 11 GQRVTISCSGSTSNLKRNYVYWYQQLPGTAP 41
>pdb|2JB5|L Chain L, Fab Fragment In Complex With Small Molecule Hapten,
Crystal Form-1
pdb|2JB6|A Chain A, Fab Fragment In Complex With Small Molecule Hapten,
Crystal Form-2
pdb|2JB6|L Chain L, Fab Fragment In Complex With Small Molecule Hapten,
Crystal Form-2
Length = 216
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 19 GQKVTVHCTGYGKN-GDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVAR 77
GQ +T+ CTG + G + W + PG+ P G + G G + G A
Sbjct: 15 GQSITISCTGTSSDVGSNNYVSWYQQHPGKAPKLMIYGGSNRPSGVSNRFSGSKSGNTAS 74
Query: 78 LRCS 81
L S
Sbjct: 75 LTIS 78
>pdb|4FQK|F Chain F, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059
COMPLEX
pdb|4FQK|L Chain L, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059
COMPLEX
Length = 216
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ+VT+ C+G N + +W + PG P
Sbjct: 15 GQRVTISCSGSSSNIGTNYVYWYQQFPGTAP 45
>pdb|4FQJ|L Chain L, Influenza BFLORIDA42006 HEMAGGLUTININ FAB CR8071 COMPLEX
Length = 216
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ+VT+ C+G N + +W + PG P
Sbjct: 15 GQRVTISCSGSSSNIGTNYVYWYQQFPGTAP 45
>pdb|3H42|L Chain L, Crystal Structure Of Pcsk9 In Complex With Fab From Ldlr
Competitive Antibody
Length = 217
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 19 GQKVTVHCTGYGKN-GDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVAR 77
GQ+VT+ CTG N G W + PG P G + G + G + G A
Sbjct: 15 GQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLISGNSNRPSGVPDRFSGSKSGTSAS 74
Query: 78 L 78
L
Sbjct: 75 L 75
>pdb|2K8I|A Chain A, Solution Structure Of E.Coli Slyd
Length = 171
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 45 PGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYG 87
P P + G GS+I G + + G +VG+ + + AYG
Sbjct: 27 PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYG 69
>pdb|2KFW|A Chain A, Solution Structure Of Full-Length Slyd From E.Coli
Length = 196
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 45 PGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYG 87
P P + G GS+I G + + G +VG+ + + AYG
Sbjct: 27 PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYG 69
>pdb|3P30|L Chain L, Crystal Structure Of The Cluster Ii Fab 1281 In Complex
With Hiv-1 Gp41 Ectodomain
Length = 213
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 25/63 (39%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQ+VT+ C+G N + +W + PG P G + G + G A L
Sbjct: 15 GQRVTISCSGSSSNIGNNYVYWYQQLPGTAPKLLIYKNNIRPSGVPDRFSGSKSGTSASL 74
Query: 79 RCS 81
S
Sbjct: 75 AIS 77
>pdb|1N03|A Chain A, Model For Active Reca Filament
pdb|1N03|B Chain B, Model For Active Reca Filament
pdb|1N03|C Chain C, Model For Active Reca Filament
pdb|1N03|D Chain D, Model For Active Reca Filament
pdb|1N03|E Chain E, Model For Active Reca Filament
pdb|1N03|F Chain F, Model For Active Reca Filament
pdb|1N03|G Chain G, Model For Active Reca Filament
pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
Polymer
Length = 352
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 20 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 57
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 21 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 58
>pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed
Helical Filament Form 2
pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed
Helical Filament Form3"
pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed
Helical Filament Form 4"
pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp"
pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp"
Length = 356
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 24 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 61
>pdb|2RHE|A Chain A, Structure Of A Novel Bence-Jones Protein (Rhe) Fragment
At 1.6 Angstroms Resolution
Length = 114
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ+VT+ CTG + + W + PG+ P
Sbjct: 15 GQRVTISCTGSATDIGSNSVIWYQQVPGKAP 45
>pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|B Chain B, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|E Chain E, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|F Chain F, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|G Chain G, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|H Chain H, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1357
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 344 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 381
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 693 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 730
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 1043 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 1080
>pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 2050
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 344 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 381
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 693 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 730
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 1042 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 1079
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 1388 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 1425
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 1736 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 1773
>pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1706
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 344 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 381
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 693 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 730
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 1043 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 1080
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFP 92
Q GKGS+++ ++ M ++ L S D A GAGG P
Sbjct: 1392 QFGKGSIMRLGEDRSMDVETISTGSL--SLDIALGAGGLP 1429
>pdb|3MA9|L Chain L, Crystal Structure Of Gp41 Derived Protein Complexed With
Fab 8066
pdb|3MAC|L Chain L, Crystal Structure Of Gp41-Derived Protein Complexed With
Fab 8062
Length = 213
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 17 VAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVA 76
V GQ + C+G N W + PGQ P G + G E G G A
Sbjct: 13 VPGQTARISCSG--DNIPYEYASWYQQKPGQAPVLVIYGDNNRPSGIPERFSGSNSGNTA 70
Query: 77 RLRCS 81
L S
Sbjct: 71 TLTIS 75
>pdb|1JVK|A Chain A, Three-Dimensional Structure Of An Immunoglobulin Light
Chain Dimer Acting As A Lethal Amyloid Precursor
pdb|1JVK|B Chain B, Three-Dimensional Structure Of An Immunoglobulin Light
Chain Dimer Acting As A Lethal Amyloid Precursor
pdb|1LGV|A Chain A, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 100k
pdb|1LGV|B Chain B, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 100k
pdb|1LHZ|A Chain A, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 293k
pdb|1LHZ|B Chain B, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 293k
Length = 216
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 19 GQKVTVHCTGYGK-NGDLSQKFWSTKDPGQQP--FTFQIGKGSVIKGWDEGVMGMQVGEV 75
GQ +TV CTG G + W + PG+ P T+++ K G + G + G
Sbjct: 15 GQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRP--SGVSDRFSGSKSGNS 72
Query: 76 ARLRCS 81
A L S
Sbjct: 73 ASLTIS 78
>pdb|2FB4|L Chain L, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
pdb|2IG2|L Chain L, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 216
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ+VT+ C+G N S W + PG P
Sbjct: 15 GQRVTISCSGTSSNIGSSTVNWYQQLPGMAP 45
>pdb|1NL0|L Chain L, Crystal Structure Of Human Factor Ix Gla Domain In
Complex Of An Inhibitory Antibody, 10c12
Length = 213
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 25/63 (39%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQKVT+ C+G N + W + PG+ P G + G + G A L
Sbjct: 15 GQKVTISCSGSTSNIGNNYVSWYQQHPGKAPKLMIYDVSKRPSGVPDRFSGSKSGNSASL 74
Query: 79 RCS 81
S
Sbjct: 75 DIS 77
>pdb|3KDM|L Chain L, Crystal Structure Of Human Anti-Steroid Fab 5f2 In
Complex With Testosterone
pdb|3KDM|A Chain A, Crystal Structure Of Human Anti-Steroid Fab 5f2 In
Complex With Testosterone
Length = 218
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 19 GQKVTVHCTGYGKN-GDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVAR 77
GQ +T+ CTG + G + W + PG+ P G + G G + G A
Sbjct: 15 GQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYGVTNRPSGVSNRFSGSKSGNTAS 74
Query: 78 LRCS 81
L S
Sbjct: 75 LTIS 78
>pdb|3D69|L Chain L, Crystal Structure Of The Fab Fragment Of An Anti-Factor
Ix Antibody 10c12
pdb|3D69|A Chain A, Crystal Structure Of The Fab Fragment Of An Anti-Factor
Ix Antibody 10c12
Length = 216
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 25/63 (39%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQKVT+ C+G N + W + PG+ P G + G + G A L
Sbjct: 15 GQKVTISCSGSTSNIGNNYVSWYQQHPGKAPKLMIYDVSKRPSGVPDRFSGSKSGNSASL 74
Query: 79 RCS 81
S
Sbjct: 75 DIS 77
>pdb|1PW3|A Chain A, Crystal Structure Of Jtor68s
pdb|1PW3|B Chain B, Crystal Structure Of Jtor68s
Length = 111
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 12 NGPKPVA---GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFT 51
N P V+ G+ VT+ CT N D + W + PG P T
Sbjct: 5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPIT 47
>pdb|1CD0|A Chain A, Structure Of Human Lamda-6 Light Chain Dimer Jto
pdb|1CD0|B Chain B, Structure Of Human Lamda-6 Light Chain Dimer Jto
Length = 111
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 12 NGPKPVA---GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFT 51
N P V+ G+ VT+ CT N D + W + PG P T
Sbjct: 5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPIT 47
>pdb|3GBM|L Chain L, Crystal Structure Of Fab Cr6261 In Complex With A H5n1
Influenza Virus Hemagglutinin.
pdb|3GBM|M Chain M, Crystal Structure Of Fab Cr6261 In Complex With A H5n1
Influenza Virus Hemagglutinin.
pdb|3GBN|L Chain L, Crystal Structure Of Fab Cr6261 In Complex With The 1918
H1n1 Influenza Virus Hemagglutinin
Length = 221
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 13/76 (17%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDE------------- 65
GQKVT+ C+G N W + PG P G +
Sbjct: 15 GQKVTISCSGSSSNIGNDYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATL 74
Query: 66 GVMGMQVGEVARLRCS 81
G+ G+Q G+ A C+
Sbjct: 75 GITGLQTGDEANYYCA 90
>pdb|2B0S|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Mn Peptide
pdb|2B1A|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug1033 Peptide
pdb|2B1H|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug29 Peptide
Length = 215
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ++++ C+G N + + +W PG P
Sbjct: 15 GQRISISCSGTSSNVENNYVYWYQHLPGTAP 45
>pdb|3NZP|A Chain A, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
pdb|3NZP|B Chain B, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
Length = 619
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 14 PKPVAGQKVTVHCTGYG---KNGDLSQKF 39
PKP G +V +H G G K+G ++ KF
Sbjct: 176 PKPNIGLRVRLHSAGVGIWAKSGGINSKF 204
>pdb|4EVN|B Chain B, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
pdb|4EVN|D Chain D, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
pdb|4EVN|F Chain F, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
pdb|4EVN|H Chain H, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
pdb|4EVN|J Chain J, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
pdb|4EVN|L Chain L, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
pdb|4EVN|N Chain N, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
pdb|4EVN|P Chain P, Crystal Structure Of Fab Cr6261 (Somatic Heavy Chain
With Germline- Reverted Light Chain)
Length = 217
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 13/75 (17%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDE------------- 65
GQKVT+ C+G N + W + PG P G +
Sbjct: 15 GQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATL 74
Query: 66 GVMGMQVGEVARLRC 80
G+ G+Q G+ A C
Sbjct: 75 GITGLQTGDEADYYC 89
>pdb|2XZA|L Chain L, Crystal Structure Of Recombinant A.17 Antibody Fab
Fragment
pdb|2XZC|L Chain L, Crystal Structure Of Phosphonate-Modified Recombinant
A.17 Antibody Fab Fragment
Length = 216
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 13/75 (17%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDE------------- 65
GQKVT+ C+G N + W + PG P G +
Sbjct: 15 GQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATL 74
Query: 66 GVMGMQVGEVARLRC 80
G+ G+Q G+ A C
Sbjct: 75 GITGLQTGDEADYYC 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,084,977
Number of Sequences: 62578
Number of extensions: 171706
Number of successful extensions: 458
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 152
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)