Query 033778
Match_columns 112
No_of_seqs 181 out of 1079
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0544 FKBP-type peptidyl-pro 100.0 2.3E-35 4.9E-40 168.8 12.5 107 1-112 1-108 (108)
2 COG0545 FkpA FKBP-type peptidy 100.0 7.5E-35 1.6E-39 188.6 12.3 104 2-112 102-205 (205)
3 KOG0549 FKBP-type peptidyl-pro 100.0 2E-31 4.4E-36 169.5 11.9 96 12-112 81-176 (188)
4 PRK11570 peptidyl-prolyl cis-t 100.0 3.1E-30 6.7E-35 170.4 13.7 105 1-112 102-206 (206)
5 TIGR03516 ppisom_GldI peptidyl 100.0 2.7E-29 5.9E-34 162.5 12.9 105 2-112 70-176 (177)
6 KOG0552 FKBP-type peptidyl-pro 100.0 6.8E-29 1.5E-33 164.0 12.3 105 1-112 120-226 (226)
7 PRK10902 FKBP-type peptidyl-pr 100.0 2.9E-27 6.2E-32 161.4 13.7 104 1-112 146-249 (269)
8 PF00254 FKBP_C: FKBP-type pep 99.9 4.4E-26 9.6E-31 134.1 11.0 91 15-109 4-94 (94)
9 KOG0543 FKBP-type peptidyl-pro 99.8 2.4E-19 5.3E-24 126.4 12.5 102 2-112 85-190 (397)
10 PRK15095 FKBP-type peptidyl-pr 99.8 3.7E-18 8.1E-23 108.7 8.3 72 15-90 4-75 (156)
11 COG1047 SlpA FKBP-type peptidy 99.7 4.3E-17 9.4E-22 104.2 10.3 72 15-90 2-73 (174)
12 PRK10737 FKBP-type peptidyl-pr 99.7 6.6E-17 1.4E-21 105.9 9.3 71 15-90 2-72 (196)
13 KOG0543 FKBP-type peptidyl-pro 99.5 2E-13 4.3E-18 96.8 7.5 81 9-109 1-82 (397)
14 TIGR00115 tig trigger factor. 99.4 3.6E-12 7.8E-17 92.1 11.8 86 14-112 145-230 (408)
15 PRK01490 tig trigger factor; P 99.4 1.4E-11 3.1E-16 89.7 11.7 86 14-112 156-241 (435)
16 COG0544 Tig FKBP-type peptidyl 99.2 8.4E-11 1.8E-15 85.6 9.4 84 16-112 158-241 (441)
17 KOG0545 Aryl-hydrocarbon recep 98.4 1E-07 2.2E-12 64.7 1.3 80 2-83 11-92 (329)
18 KOG0549 FKBP-type peptidyl-pro 98.0 6.7E-06 1.4E-10 53.2 3.5 39 53-91 2-40 (188)
19 PF09122 DUF1930: Domain of un 72.6 5 0.00011 21.7 2.4 23 61-83 35-57 (68)
20 PF01272 GreA_GreB: Transcript 69.3 6.3 0.00014 21.8 2.5 24 59-82 42-65 (77)
21 PRK02268 hypothetical protein; 55.8 19 0.0004 22.8 3.1 26 59-84 25-50 (141)
22 PHA02122 hypothetical protein 53.8 32 0.0007 18.1 3.6 19 17-39 39-57 (65)
23 TIGR01462 greA transcription e 48.6 28 0.00061 21.9 3.1 25 58-82 116-140 (151)
24 PRK00226 greA transcription el 47.6 26 0.00057 22.2 2.9 25 58-82 121-145 (157)
25 PRK05753 nucleoside diphosphat 47.1 24 0.00052 22.0 2.6 25 58-82 90-114 (137)
26 PRK11536 6-N-hydroxylaminopuri 43.5 25 0.00055 23.9 2.4 24 1-27 142-165 (223)
27 TIGR01461 greB transcription e 41.9 39 0.00084 21.6 3.0 24 59-82 119-142 (156)
28 COG0425 SirA Predicted redox p 41.3 44 0.00096 18.6 2.9 24 63-86 22-45 (78)
29 COG0048 RpsL Ribosomal protein 39.1 66 0.0014 19.9 3.5 25 1-25 65-89 (129)
30 COG2258 Uncharacterized protei 38.7 31 0.00067 23.3 2.2 25 2-29 140-164 (210)
31 PF01917 Arch_flagellin: Archa 38.3 1E+02 0.0022 20.0 4.7 34 68-106 145-178 (190)
32 PRK00809 hypothetical protein; 38.2 1E+02 0.0022 19.4 5.2 25 59-83 24-48 (144)
33 PRK05892 nucleoside diphosphat 37.5 47 0.001 21.2 2.9 24 59-82 121-144 (158)
34 PF00639 Rotamase: PPIC-type P 37.4 37 0.00079 19.3 2.2 25 55-79 58-82 (95)
35 cd03420 SirA_RHOD_Pry_redox Si 36.6 56 0.0012 17.5 2.8 23 63-85 16-38 (69)
36 COG0024 Map Methionine aminope 36.5 1.3E+02 0.0028 21.0 5.0 51 16-77 87-147 (255)
37 CHL00084 rpl19 ribosomal prote 36.2 65 0.0014 19.7 3.2 16 15-30 22-37 (117)
38 PRK01885 greB transcription el 33.4 56 0.0012 20.8 2.8 24 59-82 121-144 (157)
39 TIGR02925 cis_trans_EpsD pepti 33.4 35 0.00077 22.7 2.0 29 56-86 189-217 (232)
40 cd03422 YedF YedF is a bacteri 33.2 63 0.0014 17.3 2.6 22 63-84 16-37 (69)
41 TIGR03595 Obg_CgtA_exten Obg f 32.2 61 0.0013 17.6 2.4 18 61-78 43-62 (69)
42 PF01878 EVE: EVE domain; Int 32.2 42 0.00092 20.6 2.0 17 66-82 36-52 (143)
43 COG0298 HypC Hydrogenase matur 30.7 99 0.0021 17.6 3.1 12 15-26 38-49 (82)
44 PRK05338 rplS 50S ribosomal pr 29.8 1.2E+02 0.0026 18.5 3.6 14 16-29 19-32 (116)
45 cd01088 MetAP2 Methionine Amin 28.1 1.6E+02 0.0036 20.6 4.6 53 14-77 69-127 (291)
46 PF01206 TusA: Sulfurtransfera 27.8 71 0.0015 16.9 2.2 23 63-85 17-39 (70)
47 TIGR00501 met_pdase_II methion 27.2 1.9E+02 0.0042 20.3 4.8 53 14-77 73-131 (295)
48 COG2139 RPL21A Ribosomal prote 26.1 86 0.0019 18.5 2.4 24 63-86 26-49 (98)
49 PRK00299 sulfur transfer prote 25.9 1.1E+02 0.0024 17.0 2.8 29 57-85 16-48 (81)
50 PF11012 DUF2850: Protein of u 25.5 1.4E+02 0.003 16.9 3.1 40 16-58 13-52 (79)
51 cd03423 SirA SirA (also known 25.3 1.2E+02 0.0026 16.1 2.9 23 63-85 16-38 (69)
52 PRK08671 methionine aminopepti 25.0 2.3E+02 0.0051 19.8 4.9 52 14-76 70-127 (291)
53 PF04014 Antitoxin-MazE: Antid 24.8 1E+02 0.0022 15.1 3.4 23 59-82 11-33 (47)
54 PF09269 DUF1967: Domain of un 24.1 89 0.0019 16.9 2.2 18 61-78 43-62 (69)
55 PRK11018 hypothetical protein; 23.5 1.2E+02 0.0025 16.8 2.6 22 63-84 25-46 (78)
56 cd01090 Creatinase Creatine am 23.2 2.4E+02 0.0052 18.9 5.3 53 14-77 75-136 (228)
57 KOG2847 Phosphate acyltransfer 23.2 85 0.0018 22.1 2.3 31 49-79 126-156 (286)
58 cd00291 SirA_YedF_YeeD SirA, Y 23.2 1.3E+02 0.0027 15.6 2.9 22 63-84 16-37 (69)
59 KOG1546 Metacaspase involved i 23.0 3.1E+02 0.0066 20.2 5.1 70 16-86 135-207 (362)
60 PTZ00053 methionine aminopepti 23.0 1.6E+02 0.0035 22.5 3.9 52 14-76 232-289 (470)
61 PF04225 OapA: Opacity-associa 21.9 95 0.0021 17.6 2.1 21 63-83 36-56 (85)
62 PRK05163 rpsL 30S ribosomal pr 21.8 2.1E+02 0.0045 17.7 3.6 24 2-25 60-83 (124)
63 CHL00051 rps12 ribosomal prote 21.7 2.1E+02 0.0045 17.7 3.6 24 2-25 60-83 (123)
64 PF03894 XFP: D-xylulose 5-pho 21.5 99 0.0021 20.4 2.3 26 58-84 141-166 (179)
65 KOG0024 Sorbitol dehydrogenase 21.5 3.4E+02 0.0074 20.0 5.3 65 13-79 23-92 (354)
66 PF11604 CusF_Ec: Copper bindi 21.5 81 0.0018 17.1 1.7 17 66-82 39-55 (70)
67 PF07076 DUF1344: Protein of u 20.8 1.6E+02 0.0034 15.8 3.5 31 49-81 16-49 (61)
68 PF07655 Secretin_N_2: Secreti 20.7 51 0.0011 19.2 0.8 28 56-83 68-97 (98)
69 cd01287 FabA FabA, beta-hydrox 20.5 1.2E+02 0.0026 19.1 2.5 16 96-111 100-115 (150)
70 PRK04980 hypothetical protein; 20.3 2E+02 0.0044 17.1 3.3 75 2-82 18-99 (102)
71 TIGR00981 rpsL_bact ribosomal 20.2 2.3E+02 0.005 17.5 3.6 24 2-25 60-83 (124)
No 1
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-35 Score=168.82 Aligned_cols=107 Identities=57% Similarity=1.020 Sum_probs=102.6
Q ss_pred CCeEEEEeccCCCCC-CCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEE
Q 033778 1 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLR 79 (112)
Q Consensus 1 ~Gi~~~~~~~G~g~~-~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~ 79 (112)
||+.+.++++|+|.. |+.||.|++||++.+.|| +.|||+.+++ +|+.|.+|.+++|.||++++..|.+||++++.
T Consensus 1 mGv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG---~kfDSs~dr~-kPfkf~IGkgeVIkGwdegv~qmsvGekakLt 76 (108)
T KOG0544|consen 1 MGVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDG---KKFDSSRDRG-KPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLT 76 (108)
T ss_pred CCceeEEeeCCCCcccCCCCCEEEEEEEeEecCC---cEeecccccC-CCeeEEecCcceeechhhcchhccccccceee
Confidence 899999999999966 999999999999999999 9999999977 59999999999999999999999999999999
Q ss_pred ECCCCCcCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 033778 80 CSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112 (112)
Q Consensus 80 vp~~~ayg~~~~~~~~ip~~~~l~~~v~l~~v~ 112 (112)
|+|++|||..|.+.. ||||++|+|+|||++++
T Consensus 77 i~pd~aYG~~G~p~~-IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 77 ISPDYAYGPRGHPGG-IPPNATLVFDVELLKVN 108 (108)
T ss_pred eccccccCCCCCCCc-cCCCcEEEEEEEEEecC
Confidence 999999999998877 99999999999999975
No 2
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-35 Score=188.56 Aligned_cols=104 Identities=46% Similarity=0.826 Sum_probs=99.8
Q ss_pred CeEEEEeccCCCCCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEEEC
Q 033778 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCS 81 (112)
Q Consensus 2 Gi~~~~~~~G~g~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~vp 81 (112)
|++|++++.|+|..|+.+|.|.+||++++.|| ++|||+++++ +|+.|.++ .+|+||.++|.+|++|++|+++||
T Consensus 102 gl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G---~vFDsS~~rg-~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP 175 (205)
T COG0545 102 GLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDG---TVFDSSYDRG-QPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIP 175 (205)
T ss_pred CcEEEEEeccCCCCCCCCCEEEEEEEEecCCC---CccccccccC-CCceeecC--CeeehHHHHHhhCCCCceEEEEeC
Confidence 89999999999999999999999999999999 9999999977 49999996 899999999999999999999999
Q ss_pred CCCCcCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 033778 82 PDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112 (112)
Q Consensus 82 ~~~ayg~~~~~~~~ip~~~~l~~~v~l~~v~ 112 (112)
|++|||.++.++. ||||++|+|+|+|++|+
T Consensus 176 ~~laYG~~g~~g~-Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 176 PELAYGERGVPGV-IPPNSTLVFEVELLDVK 205 (205)
T ss_pred chhccCcCCCCCC-CCCCCeEEEEEEEEecC
Confidence 9999999998887 99999999999999985
No 3
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-31 Score=169.53 Aligned_cols=96 Identities=43% Similarity=0.764 Sum_probs=91.0
Q ss_pred CCCCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEEECCCCCcCCCCC
Q 033778 12 NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGF 91 (112)
Q Consensus 12 ~g~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~vp~~~ayg~~~~ 91 (112)
...+.+.||.+.+||++.+.|| ++|||||+++ +|++|.+|.+++++||+.+|.+||+||++++.|||+++||++|.
T Consensus 81 C~~kak~GD~l~~HY~g~leDG---t~fdSS~~rg-~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~ 156 (188)
T KOG0549|consen 81 CPEKAKKGDTLHVHYTGSLEDG---TKFDSSYSRG-APFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGA 156 (188)
T ss_pred ccccccCCCEEEEEEEEEecCC---CEEeeeccCC-CCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCC
Confidence 4556999999999999999999 9999999987 59999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeEEEEEEEEEeC
Q 033778 92 PQWGIQPNSVLDFEIQVLQVE 112 (112)
Q Consensus 92 ~~~~ip~~~~l~~~v~l~~v~ 112 (112)
++. ||++++|+|+|||++++
T Consensus 157 ~~~-IP~~A~LiFdiELv~i~ 176 (188)
T KOG0549|consen 157 PPK-IPGDAVLIFDIELVKIE 176 (188)
T ss_pred CCC-CCCCeeEEEEEEEEEee
Confidence 998 99999999999999874
No 4
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.97 E-value=3.1e-30 Score=170.40 Aligned_cols=105 Identities=35% Similarity=0.554 Sum_probs=98.1
Q ss_pred CCeEEEEeccCCCCCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEEE
Q 033778 1 MGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRC 80 (112)
Q Consensus 1 ~Gi~~~~~~~G~g~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~v 80 (112)
.|++|+++++|+|..|..+|.|.+||++++.|| ++||+++.++ .|+.|.++ .+++||+++|.+|++|++++++|
T Consensus 102 sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG---~vfdss~~~g-~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I 175 (206)
T PRK11570 102 SGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDG---TVFDSSVARG-EPAEFPVN--GVIPGWIEALTLMPVGSKWELTI 175 (206)
T ss_pred CCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCC---CEEEeccCCC-CCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence 489999999999999999999999999999988 9999999755 49999995 68999999999999999999999
Q ss_pred CCCCCcCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 033778 81 SPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112 (112)
Q Consensus 81 p~~~ayg~~~~~~~~ip~~~~l~~~v~l~~v~ 112 (112)
|+++|||+.+.++. |||+++|+|+|+|++|+
T Consensus 176 P~~lAYG~~g~~~~-Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 176 PHELAYGERGAGAS-IPPFSTLVFEVELLEIL 206 (206)
T ss_pred CHHHcCCCCCCCCC-cCCCCeEEEEEEEEEEC
Confidence 99999999988765 99999999999999985
No 5
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.97 E-value=2.7e-29 Score=162.49 Aligned_cols=105 Identities=24% Similarity=0.347 Sum_probs=96.6
Q ss_pred CeEEEEecc--CCCCCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEE
Q 033778 2 GIEKQILTP--GNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLR 79 (112)
Q Consensus 2 Gi~~~~~~~--G~g~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~ 79 (112)
|++|.++.+ |+|..|+.||.|.+||++++.+| +++++++.. .|+.|.+|.+++++||+++|.+|++||+++|+
T Consensus 70 Gl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG---~v~~ss~~~--~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~ 144 (177)
T TIGR03516 70 GFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDG---DVIYSEEEL--GPQTYKVDQQDLFSGLRDGLKLMKEGETATFL 144 (177)
T ss_pred ccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCC---CEEEeCCCC--CCEEEEeCCcchhHHHHHHHcCCCCCCEEEEE
Confidence 889998866 66667999999999999999999 999999862 49999999999999999999999999999999
Q ss_pred ECCCCCcCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 033778 80 CSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112 (112)
Q Consensus 80 vp~~~ayg~~~~~~~~ip~~~~l~~~v~l~~v~ 112 (112)
+||++|||.++.+.. ||||++|+|+|+|++|+
T Consensus 145 iP~~~AYG~~g~~~~-Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 145 FPSHKAYGYYGDQNK-IGPNLPIISTVTLLNIK 176 (177)
T ss_pred ECHHHcCCCCCCCCC-cCcCCcEEEEEEEEEec
Confidence 999999999987776 99999999999999985
No 6
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.8e-29 Score=164.03 Aligned_cols=105 Identities=43% Similarity=0.780 Sum_probs=98.9
Q ss_pred CCeEEEEeccCCCCCCCCCCEEEEEEEEEEe-CCCceeeEecccCCCCccEE-EEeCCCCccccHHHHhcCCCCCcEEEE
Q 033778 1 MGIEKQILTPGNGPKPVAGQKVTVHCTGYGK-NGDLSQKFWSTKDPGQQPFT-FQIGKGSVIKGWDEGVMGMQVGEVARL 78 (112)
Q Consensus 1 ~Gi~~~~~~~G~g~~~~~gd~V~v~y~~~~~-~g~~~~~~~~t~~~~~~~~~-~~~g~~~~~~g~~~al~~m~~Ge~~~i 78 (112)
.||.|.-++-|+|..+..|+.|.+||.+++. +| ++||+++. ..|+. |.+|.+.+|+||+.++.+|++|.+++|
T Consensus 120 ~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~G---kvFd~~~~--~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 120 GGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNG---KVFDSNFG--GKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred CCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCC---eEeecccC--CCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 4899999999999999999999999999998 56 99999987 35888 999999999999999999999999999
Q ss_pred EECCCCCcCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 033778 79 RCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112 (112)
Q Consensus 79 ~vp~~~ayg~~~~~~~~ip~~~~l~~~v~l~~v~ 112 (112)
+|||+++||.++.+. ||||++|+|+|+|+.|+
T Consensus 195 iIPp~lgYg~~g~~~--IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 195 IIPPELGYGKKGVPE--IPPNSTLVFDVELLSVK 226 (226)
T ss_pred EeCccccccccCcCc--CCCCCcEEEEEEEEecC
Confidence 999999999999885 99999999999999874
No 7
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.95 E-value=2.9e-27 Score=161.42 Aligned_cols=104 Identities=32% Similarity=0.643 Sum_probs=96.0
Q ss_pred CCeEEEEeccCCCCCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEEE
Q 033778 1 MGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRC 80 (112)
Q Consensus 1 ~Gi~~~~~~~G~g~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~v 80 (112)
.|++|+++++|+|..|+.+|.|.+||++++.|| ++|++++.++ .|+.|.+ +.+++||+++|.+|++|++++++|
T Consensus 146 sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG---~vfdss~~~g-~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~I 219 (269)
T PRK10902 146 TGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDG---KEFDNSYTRG-EPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVI 219 (269)
T ss_pred CccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCC---CEeeccccCC-CceEEec--CCcchHHHHHHhcCCCCcEEEEEE
Confidence 489999999999999999999999999999898 9999998755 4888888 469999999999999999999999
Q ss_pred CCCCCcCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 033778 81 SPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 112 (112)
Q Consensus 81 p~~~ayg~~~~~~~~ip~~~~l~~~v~l~~v~ 112 (112)
|++++||..+.++ |||+++|+|+|+|++|+
T Consensus 220 P~~laYG~~g~~g--Ippns~LvfeVeLl~V~ 249 (269)
T PRK10902 220 PPELAYGKAGVPG--IPANSTLVFDVELLDVK 249 (269)
T ss_pred CchhhCCCCCCCC--CCCCCcEEEEEEEEEec
Confidence 9999999998753 99999999999999874
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.94 E-value=4.4e-26 Score=134.06 Aligned_cols=91 Identities=43% Similarity=0.766 Sum_probs=83.9
Q ss_pred CCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEEECCCCCcCCCCCCCC
Q 033778 15 KPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQW 94 (112)
Q Consensus 15 ~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~vp~~~ayg~~~~~~~ 94 (112)
+++.||.|.+||++++.+| +.+++++... .|+.|.+|.+.+++||++||.+|++||+++++||++++||+.+..+.
T Consensus 4 ~~~~gd~V~i~y~~~~~~g---~~~~~~~~~~-~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~ 79 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDG---KVFDSSYQEG-EPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPP 79 (94)
T ss_dssp SBSTTSEEEEEEEEEETTS---EEEEETTTTT-SEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTT
T ss_pred cCCCCCEEEEEEEEEECCC---cEEEEeeecC-cceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCC
Confidence 3899999999999999877 9999997644 59999999999999999999999999999999999999999988554
Q ss_pred CCCCCCeEEEEEEEE
Q 033778 95 GIQPNSVLDFEIQVL 109 (112)
Q Consensus 95 ~ip~~~~l~~~v~l~ 109 (112)
.||++++|+|+|+|+
T Consensus 80 ~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 80 KIPPNSTLVFEIELL 94 (94)
T ss_dssp TBTTTSEEEEEEEEE
T ss_pred CcCCCCeEEEEEEEC
Confidence 599999999999986
No 9
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.4e-19 Score=126.39 Aligned_cols=102 Identities=38% Similarity=0.609 Sum_probs=88.0
Q ss_pred CeEEEEeccCCC--CCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCC-CCccccHHHHhcCCCCCcEEEE
Q 033778 2 GIEKQILTPGNG--PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGK-GSVIKGWDEGVMGMQVGEVARL 78 (112)
Q Consensus 2 Gi~~~~~~~G~g--~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~-~~~~~g~~~al~~m~~Ge~~~i 78 (112)
+|.++|+++|.| ..|..|..|.+||++++.+ .+|+++.. .+.|..|+ ..++.||+.||..|++||.+.|
T Consensus 85 ~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~----~~f~~~~~----~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v 156 (397)
T KOG0543|consen 85 GIIKRIIREGEGDYSRPNKGAVVKVHLEGELED----GVFDQREL----RFEFGEGEDIDVIEGLEIALRMMKVGEVALV 156 (397)
T ss_pred ceEEeeeecCCCCCCCCCCCcEEEEEEEEEECC----cceecccc----ceEEecCCccchhHHHHHHHHhcCccceEEE
Confidence 688999999999 4499999999999999966 46666533 57788887 4799999999999999999999
Q ss_pred EECCCCCcCCC-CCCCCCCCCCCeEEEEEEEEEeC
Q 033778 79 RCSPDYAYGAG-GFPQWGIQPNSVLDFEIQVLQVE 112 (112)
Q Consensus 79 ~vp~~~ayg~~-~~~~~~ip~~~~l~~~v~l~~v~ 112 (112)
+|+|.++||+. +.++. |||+++|.|+|+|+++.
T Consensus 157 ~i~~~YayG~~~~~~p~-IPPnA~l~yEVeL~~f~ 190 (397)
T KOG0543|consen 157 TIDPKYAYGEEGGEPPL-IPPNATLLYEVELLDFE 190 (397)
T ss_pred EeCcccccCCCCCCCCC-CCCCceEEEEEEEEeee
Confidence 99999999954 45555 99999999999999874
No 10
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.76 E-value=3.7e-18 Score=108.68 Aligned_cols=72 Identities=28% Similarity=0.507 Sum_probs=66.7
Q ss_pred CCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEEECCCCCcCCCC
Q 033778 15 KPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGG 90 (112)
Q Consensus 15 ~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~vp~~~ayg~~~ 90 (112)
+++.++.|.+||++++.|| ++||+|+..+ .|+.|.+|.+++++||++||.+|++|+++++.|||+.|||...
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG---~v~dst~~~~-~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDG---STAESTRNNG-KPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCC---CEEEECCCCC-CCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 4789999999999999888 9999998644 5999999999999999999999999999999999999999864
No 11
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.3e-17 Score=104.22 Aligned_cols=72 Identities=31% Similarity=0.493 Sum_probs=66.3
Q ss_pred CCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEEECCCCCcCCCC
Q 033778 15 KPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGG 90 (112)
Q Consensus 15 ~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~vp~~~ayg~~~ 90 (112)
+++.+|.|.+||++++.|| +++|+|.... .|+.|.+|.+++++||++||.+|.+|++.++.|||+.|||.+.
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg---~v~Dtt~e~~-~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDG---EVVDTTDENY-GPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred cccCCCEEEEEEEEEecCC---cEEEcccccC-CCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 3688999999999999997 9999997633 4999999999999999999999999999999999999999864
No 12
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.72 E-value=6.6e-17 Score=105.87 Aligned_cols=71 Identities=21% Similarity=0.319 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEEECCCCCcCCCC
Q 033778 15 KPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGG 90 (112)
Q Consensus 15 ~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~vp~~~ayg~~~ 90 (112)
+++.++.|+++|++++.+| +++|+|+. ..|+.|.+|.++++|+|++||.+|.+|+++++.|||+.|||.+.
T Consensus 2 kI~~~~vV~l~Y~l~~~dG---~v~dst~~--~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDG---VLVDESPV--SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred ccCCCCEEEEEEEEEeCCC---CEEEecCC--CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 3678999999999999888 99999975 35999999999999999999999999999999999999999864
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2e-13 Score=96.78 Aligned_cols=81 Identities=49% Similarity=0.854 Sum_probs=74.5
Q ss_pred ccCCCCC-CCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEEECCCCCcC
Q 033778 9 TPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYG 87 (112)
Q Consensus 9 ~~G~g~~-~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~vp~~~ayg 87 (112)
++|+|.. |..||.|.+||++++.|| +.||+|.+ +.|+.|.+|.++++.+|..++..|+. |
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dg---t~fdss~d--~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g 61 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDG---TKFDSSRD--GDPFKFDLGKGSVIKGWDLGVATMKK--------------G 61 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCC---eecccccC--CCceeeecCCCccccccccccccccc--------------c
Confidence 4788877 999999999999999999 99999988 46999999999999999999999998 6
Q ss_pred CCCCCCCCCCCCCeEEEEEEEE
Q 033778 88 AGGFPQWGIQPNSVLDFEIQVL 109 (112)
Q Consensus 88 ~~~~~~~~ip~~~~l~~~v~l~ 109 (112)
..+.++. ||++++|.|+++++
T Consensus 62 ~~~~pp~-ip~~a~l~fe~el~ 82 (397)
T KOG0543|consen 62 EAGSPPK-IPSNATLLFEVELL 82 (397)
T ss_pred ccCCCCC-CCCCcceeeeeccc
Confidence 7778888 99999999999975
No 14
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.43 E-value=3.6e-12 Score=92.14 Aligned_cols=86 Identities=26% Similarity=0.526 Sum_probs=75.1
Q ss_pred CCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEEECCCCCcCCCCCCC
Q 033778 14 PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQ 93 (112)
Q Consensus 14 ~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~vp~~~ayg~~~~~~ 93 (112)
.+++.||.|.++|+++. +| +.++++.. .++.|.+|.+.+++||+++|.||++|+++.|.++++..|+....+
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg---~~~~~~~~---~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~~- 216 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DG---EAFEGGKA---ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELA- 216 (408)
T ss_pred cccCCCCEEEEEEEEEE-CC---EECcCCCC---CCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccCC-
Confidence 35889999999999976 77 88887654 589999999999999999999999999999999999989876544
Q ss_pred CCCCCCCeEEEEEEEEEeC
Q 033778 94 WGIQPNSVLDFEIQVLQVE 112 (112)
Q Consensus 94 ~~ip~~~~l~~~v~l~~v~ 112 (112)
+.++.|+|+|.+|+
T Consensus 217 -----gk~~~f~v~i~~I~ 230 (408)
T TIGR00115 217 -----GKEATFKVTVKEVK 230 (408)
T ss_pred -----CCeEEEEEEEEEec
Confidence 45999999999874
No 15
>PRK01490 tig trigger factor; Provisional
Probab=99.37 E-value=1.4e-11 Score=89.72 Aligned_cols=86 Identities=26% Similarity=0.494 Sum_probs=74.8
Q ss_pred CCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEEECCCCCcCCCCCCC
Q 033778 14 PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQ 93 (112)
Q Consensus 14 ~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~vp~~~ayg~~~~~~ 93 (112)
..++.||.|.++|+++. +| +.++++.. .++.|.+|.+.+++||+++|.||++|+++.+.++++..|+.....
T Consensus 156 ~~~~~gD~V~vd~~~~~-~g---~~~~~~~~---~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~la- 227 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI-DG---EEFEGGKA---EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLA- 227 (435)
T ss_pred ccCCCCCEEEEEEEEEE-CC---EECcCCCC---CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccCC-
Confidence 34899999999999997 77 88887644 589999999999999999999999999999999999888776544
Q ss_pred CCCCCCCeEEEEEEEEEeC
Q 033778 94 WGIQPNSVLDFEIQVLQVE 112 (112)
Q Consensus 94 ~~ip~~~~l~~~v~l~~v~ 112 (112)
+.++.|.|+|.+|+
T Consensus 228 -----gk~~~f~v~v~~V~ 241 (435)
T PRK01490 228 -----GKEATFKVTVKEVK 241 (435)
T ss_pred -----CCeEEEEEEEEEec
Confidence 44899999999874
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=8.4e-11 Score=85.64 Aligned_cols=84 Identities=25% Similarity=0.505 Sum_probs=74.0
Q ss_pred CCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEEECCCCCcCCCCCCCCC
Q 033778 16 PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWG 95 (112)
Q Consensus 16 ~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~vp~~~ayg~~~~~~~~ 95 (112)
++.||.|+|+|.++. || ..|..... +.+.+.+|.++++|||+++|.||+.|++..|.|.....|......++
T Consensus 158 a~~gD~v~IDf~g~i-Dg---~~fegg~a---e~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~LaGK- 229 (441)
T COG0544 158 AENGDRVTIDFEGSV-DG---EEFEGGKA---ENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELAGK- 229 (441)
T ss_pred cccCCEEEEEEEEEE-cC---eeccCccc---cCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhCCC-
Confidence 899999999999965 77 88877644 58999999999999999999999999999999998888888766665
Q ss_pred CCCCCeEEEEEEEEEeC
Q 033778 96 IQPNSVLDFEIQVLQVE 112 (112)
Q Consensus 96 ip~~~~l~~~v~l~~v~ 112 (112)
+..|.|+|.+|+
T Consensus 230 -----~a~F~V~vkeVk 241 (441)
T COG0544 230 -----EATFKVKVKEVK 241 (441)
T ss_pred -----ceEEEEEEEEEe
Confidence 889999998874
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1e-07 Score=64.70 Aligned_cols=80 Identities=26% Similarity=0.450 Sum_probs=68.6
Q ss_pred CeEEEEeccCCCCC--CCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCCccccHHHHhcCCCCCcEEEEE
Q 033778 2 GIEKQILTPGNGPK--PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLR 79 (112)
Q Consensus 2 Gi~~~~~~~G~g~~--~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~ 79 (112)
||.++++..|+|.- ..+|..|.+||.....+.. .+++|+|...+ +|..+.+|...-++-|+..|..|+++|.+.|+
T Consensus 11 gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~-~tviDDsRk~g-kPmeiiiGkkFkL~VwE~il~tM~v~EvaqF~ 88 (329)
T KOG0545|consen 11 GVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEE-RTVIDDSRKVG-KPMEIIIGKKFKLEVWEIILTTMRVHEVAQFW 88 (329)
T ss_pred hhhHhhccCCCccCccccCCceEEEEEEecccCcc-cccccchhhcC-CCeEEeeccccccHHHHHHHHHHhhhhHHHhh
Confidence 78899999999976 6699999999999876532 16899998765 59999999888899999999999999999988
Q ss_pred ECCC
Q 033778 80 CSPD 83 (112)
Q Consensus 80 vp~~ 83 (112)
+...
T Consensus 89 ~d~~ 92 (329)
T KOG0545|consen 89 CDTI 92 (329)
T ss_pred hhhh
Confidence 7643
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=6.7e-06 Score=53.24 Aligned_cols=39 Identities=36% Similarity=0.684 Sum_probs=35.0
Q ss_pred EeCCCCccccHHHHhcCCCCCcEEEEEECCCCCcCCCCC
Q 033778 53 QIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGF 91 (112)
Q Consensus 53 ~~g~~~~~~g~~~al~~m~~Ge~~~i~vp~~~ayg~~~~ 91 (112)
.+|.+.++++.+.+|.+|+.|+++++.+||+++||..+.
T Consensus 2 ~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~ 40 (188)
T KOG0549|consen 2 TLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR 40 (188)
T ss_pred cccceEEecCHHHHhhhhhccccceeccCCccccccccc
Confidence 467788999999999999999999999999999996543
No 19
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=72.59 E-value=5 Score=21.66 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=17.9
Q ss_pred ccHHHHhcCCCCCcEEEEEECCC
Q 033778 61 KGWDEGVMGMQVGEVARLRCSPD 83 (112)
Q Consensus 61 ~g~~~al~~m~~Ge~~~i~vp~~ 83 (112)
+.+..|+..|+.||++.++..+.
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHHhhcCceeEEEEecC
Confidence 46889999999999999988764
No 20
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=69.31 E-value=6.3 Score=21.79 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=18.7
Q ss_pred ccccHHHHhcCCCCCcEEEEEECC
Q 033778 59 VIKGWDEGVMGMQVGEVARLRCSP 82 (112)
Q Consensus 59 ~~~g~~~al~~m~~Ge~~~i~vp~ 82 (112)
....+-.||.+.++||.+.+.+|.
T Consensus 42 ~~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 42 IDSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TTSHHHHHHTT-BTT-EEEEEETT
T ss_pred ecCHHHHHhcCCCCCCEEEEEeCC
Confidence 345789999999999999998765
No 21
>PRK02268 hypothetical protein; Provisional
Probab=55.82 E-value=19 Score=22.76 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=20.6
Q ss_pred ccccHHHHhcCCCCCcEEEEEECCCC
Q 033778 59 VIKGWDEGVMGMQVGEVARLRCSPDY 84 (112)
Q Consensus 59 ~~~g~~~al~~m~~Ge~~~i~vp~~~ 84 (112)
++.|=...|..|++||++.++.|-..
T Consensus 25 v~hgK~apl~RmkpGD~ivyYsp~~~ 50 (141)
T PRK02268 25 VCHGKAAPLRRMKPGDWIIYYSPKTT 50 (141)
T ss_pred eCCCccchhhcCCCCCEEEEEeceEe
Confidence 44555667899999999999998654
No 22
>PHA02122 hypothetical protein
Probab=53.85 E-value=32 Score=18.11 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.1
Q ss_pred CCCCEEEEEEEEEEeCCCceeeE
Q 033778 17 VAGQKVTVHCTGYGKNGDLSQKF 39 (112)
Q Consensus 17 ~~gd~V~v~y~~~~~~g~~~~~~ 39 (112)
..||.|.++|++.. +| +++
T Consensus 39 ~~gd~v~vn~e~~~-ng---~l~ 57 (65)
T PHA02122 39 DDGDEVIVNFELVV-NG---KLI 57 (65)
T ss_pred cCCCEEEEEEEEEE-CC---EEE
Confidence 57899999999986 66 554
No 23
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=48.58 E-value=28 Score=21.94 Aligned_cols=25 Identities=20% Similarity=0.419 Sum_probs=21.1
Q ss_pred CccccHHHHhcCCCCCcEEEEEECC
Q 033778 58 SVIKGWDEGVMGMQVGEVARLRCSP 82 (112)
Q Consensus 58 ~~~~g~~~al~~m~~Ge~~~i~vp~ 82 (112)
+....+-.||.|.++||.+.+..|.
T Consensus 116 S~~SPlG~ALlG~~~Gd~v~v~~p~ 140 (151)
T TIGR01462 116 SIDSPLGKALIGKKVGDVVEVQTPK 140 (151)
T ss_pred cCCCHHHHHHcCCCCCCEEEEEeCC
Confidence 3456799999999999999997765
No 24
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=47.61 E-value=26 Score=22.16 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=20.9
Q ss_pred CccccHHHHhcCCCCCcEEEEEECC
Q 033778 58 SVIKGWDEGVMGMQVGEVARLRCSP 82 (112)
Q Consensus 58 ~~~~g~~~al~~m~~Ge~~~i~vp~ 82 (112)
+....+-.||.|.++||.+.+..|.
T Consensus 121 S~~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 121 SIESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred ccCChHHHHHhCCCCCCEEEEEcCC
Confidence 3456788999999999999997765
No 25
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=47.12 E-value=24 Score=21.96 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=20.8
Q ss_pred CccccHHHHhcCCCCCcEEEEEECC
Q 033778 58 SVIKGWDEGVMGMQVGEVARLRCSP 82 (112)
Q Consensus 58 ~~~~g~~~al~~m~~Ge~~~i~vp~ 82 (112)
++...+-.||.|.++||.+.+..|.
T Consensus 90 Si~SPlG~ALlG~~~Gd~v~v~~p~ 114 (137)
T PRK05753 90 SVLAPVGAALLGLSVGQSIDWPLPG 114 (137)
T ss_pred cccCHHHHHHcCCCCCCEEEEECCC
Confidence 3456799999999999999987664
No 26
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=43.54 E-value=25 Score=23.92 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=19.3
Q ss_pred CCeEEEEeccCCCCCCCCCCEEEEEEE
Q 033778 1 MGIEKQILTPGNGPKPVAGQKVTVHCT 27 (112)
Q Consensus 1 ~Gi~~~~~~~G~g~~~~~gd~V~v~y~ 27 (112)
.|.+++|+++|. ++.||.+.+-=.
T Consensus 142 ~G~Y~RVL~~G~---V~~GD~v~l~~r 165 (223)
T PRK11536 142 CGWLYRVIAPGK---VSADAPLELVSR 165 (223)
T ss_pred cEEEEEEECCcE---EcCCCEEEEEeC
Confidence 388999999987 789998876544
No 27
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=41.87 E-value=39 Score=21.55 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=20.6
Q ss_pred ccccHHHHhcCCCCCcEEEEEECC
Q 033778 59 VIKGWDEGVMGMQVGEVARLRCSP 82 (112)
Q Consensus 59 ~~~g~~~al~~m~~Ge~~~i~vp~ 82 (112)
....+-.||.|.++||.+.+.+|.
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~ 142 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPA 142 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCC
Confidence 456789999999999999997765
No 28
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=41.29 E-value=44 Score=18.64 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=20.8
Q ss_pred HHHHhcCCCCCcEEEEEECCCCCc
Q 033778 63 WDEGVMGMQVGEVARLRCSPDYAY 86 (112)
Q Consensus 63 ~~~al~~m~~Ge~~~i~vp~~~ay 86 (112)
..++|..|.+|+..+++.....+.
T Consensus 22 ~kk~l~~m~~Ge~LeV~~ddp~~~ 45 (78)
T COG0425 22 TKKALAKLKPGEILEVIADDPAAK 45 (78)
T ss_pred HHHHHHcCCCCCEEEEEecCcchH
Confidence 678999999999999999876655
No 29
>COG0048 RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Probab=39.08 E-value=66 Score=19.90 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=18.5
Q ss_pred CCeEEEEeccCCCCCCCCCCEEEEE
Q 033778 1 MGIEKQILTPGNGPKPVAGQKVTVH 25 (112)
Q Consensus 1 ~Gi~~~~~~~G~g~~~~~gd~V~v~ 25 (112)
+|..+.-..+|+|.-+++.|.|.|.
T Consensus 65 NG~~VtAyiPg~Gh~lqEH~~Vli~ 89 (129)
T COG0048 65 NGKEVTAYIPGEGHNLQEHSEVLIR 89 (129)
T ss_pred CCcEEEEEcCCCCccccccCEEEEe
Confidence 4666777778888778888887764
No 30
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.70 E-value=31 Score=23.32 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.0
Q ss_pred CeEEEEeccCCCCCCCCCCEEEEEEEEE
Q 033778 2 GIEKQILTPGNGPKPVAGQKVTVHCTGY 29 (112)
Q Consensus 2 Gi~~~~~~~G~g~~~~~gd~V~v~y~~~ 29 (112)
|+++++|++|. +..||.+.+-+...
T Consensus 140 G~y~RVL~~G~---v~~gD~l~l~~r~~ 164 (210)
T COG2258 140 GWYARVLEEGK---VRAGDPLKLIPRPS 164 (210)
T ss_pred cEEEEEcccce---ecCCCceEEecCCC
Confidence 79999999986 78999988877664
No 31
>PF01917 Arch_flagellin: Archaebacterial flagellin; InterPro: IPR002774 Archaeal motility occurs by the rotation of flagella that are different to bacterial flagella, but show similarity to bacterial type IV pili. These similarities include the multiflagellin nature of the flagellar filament, N-terminal sequence similarities, as well as the presence of homologous proteins in the two systems [, ]. Also unlike bacterial flagellins but similar to type IV pilins, archaeal flagellins are initially synthesised with a short leader peptide that is cleaved by a membrane-located peptidase [, ]. The enzyme responsible for the removal of the this leader peptide is FlaK [].; GO: 0005198 structural molecule activity, 0006928 cellular component movement
Probab=38.30 E-value=1e+02 Score=19.99 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=24.0
Q ss_pred cCCCCCcEEEEEECCCCCcCCCCCCCCCCCCCCeEEEEE
Q 033778 68 MGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEI 106 (112)
Q Consensus 68 ~~m~~Ge~~~i~vp~~~ayg~~~~~~~~ip~~~~l~~~v 106 (112)
.-+.+||+.++.|.....+|..+ ++++....++|
T Consensus 145 ~~l~~ge~~~i~I~~~~~~g~~~-----l~~~~~~~i~I 178 (190)
T PF01917_consen 145 PVLEPGETVEITINLSAIFGGNG-----LEPGTDFTIEI 178 (190)
T ss_pred ccccCCcEEEEEEEcccccCCCC-----CCCCCEEEEEE
Confidence 45779999999999887766542 55556555554
No 32
>PRK00809 hypothetical protein; Provisional
Probab=38.18 E-value=1e+02 Score=19.38 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=20.4
Q ss_pred ccccHHHHhcCCCCCcEEEEEECCC
Q 033778 59 VIKGWDEGVMGMQVGEVARLRCSPD 83 (112)
Q Consensus 59 ~~~g~~~al~~m~~Ge~~~i~vp~~ 83 (112)
+..+=...|..|++||++.++.+..
T Consensus 24 ~~~~~rn~lr~Mk~GD~v~fYhs~~ 48 (144)
T PRK00809 24 VPERYKNTIEKVKPGDKLIIYVSQE 48 (144)
T ss_pred cchhhhhHHhhCCCCCEEEEEECCc
Confidence 4455667788899999999999975
No 33
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=37.46 E-value=47 Score=21.24 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=20.4
Q ss_pred ccccHHHHhcCCCCCcEEEEEECC
Q 033778 59 VIKGWDEGVMGMQVGEVARLRCSP 82 (112)
Q Consensus 59 ~~~g~~~al~~m~~Ge~~~i~vp~ 82 (112)
....+-.||.|.++||.+.+..|.
T Consensus 121 ~~SPlG~ALlGk~vGD~v~v~~p~ 144 (158)
T PRK05892 121 ADSPLGQALAGHQAGDTVTYSTPQ 144 (158)
T ss_pred cCCHHHHHHhCCCCCCEEEEEcCC
Confidence 446789999999999999987765
No 34
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=37.39 E-value=37 Score=19.28 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=21.6
Q ss_pred CCCCccccHHHHhcCCCCCcEEEEE
Q 033778 55 GKGSVIKGWDEGVMGMQVGEVARLR 79 (112)
Q Consensus 55 g~~~~~~g~~~al~~m~~Ge~~~i~ 79 (112)
..+.+.+.|++++..|++|+....+
T Consensus 58 ~~~~l~~~~~~~~~~l~~Gevs~pi 82 (95)
T PF00639_consen 58 SRGQLPPEFEKALFALKPGEVSKPI 82 (95)
T ss_dssp ETTSSBHHHHHHHHTSTTTSBEEEE
T ss_pred cCCcccHHHHHHHHhCCCCCcCCCE
Confidence 4468999999999999999998655
No 35
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=36.64 E-value=56 Score=17.50 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=19.5
Q ss_pred HHHHhcCCCCCcEEEEEECCCCC
Q 033778 63 WDEGVMGMQVGEVARLRCSPDYA 85 (112)
Q Consensus 63 ~~~al~~m~~Ge~~~i~vp~~~a 85 (112)
..++|..|+.|+...+.+....+
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~a 38 (69)
T cd03420 16 LKKEIDKLQDGEQLEVKASDPGF 38 (69)
T ss_pred HHHHHHcCCCCCEEEEEECCccH
Confidence 67899999999999998876544
No 36
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=36.52 E-value=1.3e+02 Score=21.02 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=34.8
Q ss_pred CCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCC------cc----ccHHHHhcCCCCCcEEE
Q 033778 16 PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS------VI----KGWDEGVMGMQVGEVAR 77 (112)
Q Consensus 16 ~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~------~~----~g~~~al~~m~~Ge~~~ 77 (112)
+++||.|.++..... || -.-|+ ..+|.+|... ++ ..|+.++..+++|-+..
T Consensus 87 lk~GDiv~IDvg~~~-dG---~~~Ds-------a~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l~ 147 (255)
T COG0024 87 LKEGDIVKIDVGAHI-DG---YIGDT-------AITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARLG 147 (255)
T ss_pred cCCCCEEEEEEEEEE-CC---eeeeE-------EEEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCHH
Confidence 899999999998886 66 33333 5667777322 22 46777778888776653
No 37
>CHL00084 rpl19 ribosomal protein L19
Probab=36.22 E-value=65 Score=19.68 Aligned_cols=16 Identities=25% Similarity=0.075 Sum_probs=13.2
Q ss_pred CCCCCCEEEEEEEEEE
Q 033778 15 KPVAGQKVTVHCTGYG 30 (112)
Q Consensus 15 ~~~~gd~V~v~y~~~~ 30 (112)
....||.|.++|...-
T Consensus 22 ~f~~GDtV~V~~~i~e 37 (117)
T CHL00084 22 KIRVGDTVKVGVLIQE 37 (117)
T ss_pred ccCCCCEEEEEEEEec
Confidence 3789999999997763
No 38
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=33.43 E-value=56 Score=20.84 Aligned_cols=24 Identities=8% Similarity=0.199 Sum_probs=20.6
Q ss_pred ccccHHHHhcCCCCCcEEEEEECC
Q 033778 59 VIKGWDEGVMGMQVGEVARLRCSP 82 (112)
Q Consensus 59 ~~~g~~~al~~m~~Ge~~~i~vp~ 82 (112)
+...+-.||.|.++||.+.+.+|.
T Consensus 121 ~~SPlG~ALlGk~vGd~v~v~~p~ 144 (157)
T PRK01885 121 IDSPMARALLKKEVGDEVTVNTPA 144 (157)
T ss_pred ccCHHHHHHhCCCCCCEEEEEcCC
Confidence 356789999999999999997766
No 39
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=33.43 E-value=35 Score=22.72 Aligned_cols=29 Identities=3% Similarity=-0.102 Sum_probs=22.1
Q ss_pred CCCccccHHHHhcCCCCCcEEEEEECCCCCc
Q 033778 56 KGSVIKGWDEGVMGMQVGEVARLRCSPDYAY 86 (112)
Q Consensus 56 ~~~~~~g~~~al~~m~~Ge~~~i~vp~~~ay 86 (112)
.+++++.|.+++..|++|+.. . |....+|
T Consensus 189 ~~~l~~~~~~a~~~l~~G~is-~-v~s~~G~ 217 (232)
T TIGR02925 189 AEQLPAEILAVLAKLKPGAPL-V-VQGPNNV 217 (232)
T ss_pred hhhCCHHHHHHHHhCCCCCeE-E-eecCCce
Confidence 356889999999999999985 3 5554444
No 40
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=33.18 E-value=63 Score=17.32 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=18.5
Q ss_pred HHHHhcCCCCCcEEEEEECCCC
Q 033778 63 WDEGVMGMQVGEVARLRCSPDY 84 (112)
Q Consensus 63 ~~~al~~m~~Ge~~~i~vp~~~ 84 (112)
..++|..|..|+...+.+.-..
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~ 37 (69)
T cd03422 16 TLEALPSLKPGEILEVISDCPQ 37 (69)
T ss_pred HHHHHHcCCCCCEEEEEecCch
Confidence 5679999999999999887554
No 41
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=32.23 E-value=61 Score=17.60 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=14.5
Q ss_pred ccHHHHhc--CCCCCcEEEE
Q 033778 61 KGWDEGVM--GMQVGEVARL 78 (112)
Q Consensus 61 ~g~~~al~--~m~~Ge~~~i 78 (112)
-|++++|. |.+.|+.+.|
T Consensus 43 ~Gv~~~L~~~G~~~GD~V~I 62 (69)
T TIGR03595 43 LGVEDALRKAGAKDGDTVRI 62 (69)
T ss_pred CCHHHHHHHcCCCCCCEEEE
Confidence 47888885 7789998886
No 42
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=32.20 E-value=42 Score=20.64 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=12.9
Q ss_pred HhcCCCCCcEEEEEECC
Q 033778 66 GVMGMQVGEVARLRCSP 82 (112)
Q Consensus 66 al~~m~~Ge~~~i~vp~ 82 (112)
.++.|++||++.|+.+.
T Consensus 36 ~l~~mk~GD~vifY~s~ 52 (143)
T PF01878_consen 36 NLKRMKPGDKVIFYHSG 52 (143)
T ss_dssp HHHC--TT-EEEEEETS
T ss_pred hhhcCCCCCEEEEEEcC
Confidence 77899999999999998
No 43
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.72 E-value=99 Score=17.62 Aligned_cols=12 Identities=33% Similarity=0.410 Sum_probs=9.8
Q ss_pred CCCCCCEEEEEE
Q 033778 15 KPVAGQKVTVHC 26 (112)
Q Consensus 15 ~~~~gd~V~v~y 26 (112)
.++.||.|.+|-
T Consensus 38 ~v~~GdyVLVHv 49 (82)
T COG0298 38 EVKVGDYVLVHV 49 (82)
T ss_pred ccccCCEEEEEe
Confidence 688899998883
No 44
>PRK05338 rplS 50S ribosomal protein L19; Provisional
Probab=29.81 E-value=1.2e+02 Score=18.51 Aligned_cols=14 Identities=29% Similarity=0.249 Sum_probs=12.2
Q ss_pred CCCCCEEEEEEEEE
Q 033778 16 PVAGQKVTVHCTGY 29 (112)
Q Consensus 16 ~~~gd~V~v~y~~~ 29 (112)
...||.|.++|...
T Consensus 19 f~~GD~V~V~~~i~ 32 (116)
T PRK05338 19 FRPGDTVRVHVKVV 32 (116)
T ss_pred cCCCCEEEEEEEEc
Confidence 78999999999765
No 45
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=28.11 E-value=1.6e+02 Score=20.55 Aligned_cols=53 Identities=11% Similarity=0.005 Sum_probs=32.2
Q ss_pred CCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCC------ccccHHHHhcCCCCCcEEE
Q 033778 14 PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS------VIKGWDEGVMGMQVGEVAR 77 (112)
Q Consensus 14 ~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~------~~~g~~~al~~m~~Ge~~~ 77 (112)
..++.||.|.++.-... +| -..|.+ .++.+|... ...+++.++..+++|-+..
T Consensus 69 ~~l~~GDvV~iD~G~~~-dG---Y~sD~a-------rT~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~~~ 127 (291)
T cd01088 69 TVLKEGDVVKLDFGAHV-DG---YIADSA-------FTVDFDPKYDDLLEAAKEALNAAIKEAGPDVRLG 127 (291)
T ss_pred cccCCCCEEEEEEEEEE-CC---EEEEEE-------EEEecChhHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 44899999999876654 55 444432 334444321 2356677777777776543
No 46
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=27.80 E-value=71 Score=16.85 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=18.5
Q ss_pred HHHHhcCCCCCcEEEEEECCCCC
Q 033778 63 WDEGVMGMQVGEVARLRCSPDYA 85 (112)
Q Consensus 63 ~~~al~~m~~Ge~~~i~vp~~~a 85 (112)
...+|..|..|+...+++..+.+
T Consensus 17 ~~~~l~~l~~G~~l~v~~d~~~~ 39 (70)
T PF01206_consen 17 AKKALKELPPGEVLEVLVDDPAA 39 (70)
T ss_dssp HHHHHHTSGTT-EEEEEESSTTH
T ss_pred HHHHHHhcCCCCEEEEEECCccH
Confidence 66789999999999999876654
No 47
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=27.22 E-value=1.9e+02 Score=20.30 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=31.7
Q ss_pred CCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCC--C----ccccHHHHhcCCCCCcEEE
Q 033778 14 PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKG--S----VIKGWDEGVMGMQVGEVAR 77 (112)
Q Consensus 14 ~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~--~----~~~g~~~al~~m~~Ge~~~ 77 (112)
..++.||.|.++.-... +| -..|. ..++.+|.. . ...+++.|+..+++|-+..
T Consensus 73 ~~l~~GDvV~iD~G~~~-dG---Y~aD~-------arT~~vG~~~~~l~~a~~~A~~aai~~~kPGv~~~ 131 (295)
T TIGR00501 73 TVFKDGDVVKLDLGAHV-DG---YIADT-------AITVDLGDQYDNLVKAAKDALYTAIKEIRAGVRVG 131 (295)
T ss_pred ccCCCCCEEEEEEeEEE-CC---EEEEE-------EEEEEeCcHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 34889999999876554 65 43333 344555542 1 2245666777777765543
No 48
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=26.07 E-value=86 Score=18.50 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=21.2
Q ss_pred HHHHhcCCCCCcEEEEEECCCCCc
Q 033778 63 WDEGVMGMQVGEVARLRCSPDYAY 86 (112)
Q Consensus 63 ~~~al~~m~~Ge~~~i~vp~~~ay 86 (112)
+..+|+..++||.+.|.|.|+.--
T Consensus 26 lsr~l~ey~~Gd~V~I~IdpSv~k 49 (98)
T COG2139 26 LSRYLQEYKVGDKVHIDIDPSVHK 49 (98)
T ss_pred hhhHHhhccCCCEEEEEeCccccc
Confidence 889999999999999999987643
No 49
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=25.91 E-value=1.1e+02 Score=17.03 Aligned_cols=29 Identities=21% Similarity=0.114 Sum_probs=22.9
Q ss_pred CCcccc----HHHHhcCCCCCcEEEEEECCCCC
Q 033778 57 GSVIKG----WDEGVMGMQVGEVARLRCSPDYA 85 (112)
Q Consensus 57 ~~~~~g----~~~al~~m~~Ge~~~i~vp~~~a 85 (112)
+..+|. ..++|..|+.|+...+...-..+
T Consensus 16 Gl~CP~Pll~~kk~l~~l~~G~~l~V~~dd~~~ 48 (81)
T PRK00299 16 GLRCPEPVMMVRKTVRNMQPGETLLIIADDPAT 48 (81)
T ss_pred CCCCCHHHHHHHHHHHcCCCCCEEEEEeCCccH
Confidence 455665 88999999999999998875443
No 50
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=25.50 E-value=1.4e+02 Score=16.91 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=29.7
Q ss_pred CCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCC
Q 033778 16 PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS 58 (112)
Q Consensus 16 ~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~ 58 (112)
+=.-|...+.=.+...+| .++.+.++-+++.+.+..|.+.
T Consensus 13 ~Ya~e~~~l~~~GV~~ng---rlV~T~F~fDG~~l~~~~G~~~ 52 (79)
T PF11012_consen 13 PYAAEEFTLNESGVFRNG---RLVATSFEFDGKTLEYRTGSGT 52 (79)
T ss_pred CccccEEEECCCcEEECC---CEEeeEEEECCCEEEEEECCeE
Confidence 456677777777777788 7888877766678888887654
No 51
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=25.32 E-value=1.2e+02 Score=16.12 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=19.0
Q ss_pred HHHHhcCCCCCcEEEEEECCCCC
Q 033778 63 WDEGVMGMQVGEVARLRCSPDYA 85 (112)
Q Consensus 63 ~~~al~~m~~Ge~~~i~vp~~~a 85 (112)
...+|..|..|+..++.+.-..+
T Consensus 16 ~k~~l~~l~~G~~l~V~~dd~~s 38 (69)
T cd03423 16 LHKKVRKMKPGDTLLVLATDPST 38 (69)
T ss_pred HHHHHHcCCCCCEEEEEeCCCch
Confidence 67899999999999998875443
No 52
>PRK08671 methionine aminopeptidase; Provisional
Probab=24.96 E-value=2.3e+02 Score=19.79 Aligned_cols=52 Identities=12% Similarity=0.065 Sum_probs=31.3
Q ss_pred CCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCC--C----ccccHHHHhcCCCCCcEE
Q 033778 14 PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKG--S----VIKGWDEGVMGMQVGEVA 76 (112)
Q Consensus 14 ~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~--~----~~~g~~~al~~m~~Ge~~ 76 (112)
..++.||.|.++.-... +| -..|. ..++.+|.. . ...+++.++..+++|-+.
T Consensus 70 ~~l~~GDvV~iD~G~~~-dG---Y~aD~-------arT~~vG~~~~~l~~a~~~a~~aai~~ikpG~~~ 127 (291)
T PRK08671 70 RVFPEGDVVKLDLGAHV-DG---YIADT-------AVTVDLGGKYEDLVEASEEALEAAIEVVRPGVSV 127 (291)
T ss_pred cccCCCCEEEEEEeEEE-CC---EEEEE-------EEEEEeChhHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 34889999999986553 65 43333 334555532 1 234566677777777543
No 53
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=24.82 E-value=1e+02 Score=15.06 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=16.0
Q ss_pred ccccHHHHhcCCCCCcEEEEEECC
Q 033778 59 VIKGWDEGVMGMQVGEVARLRCSP 82 (112)
Q Consensus 59 ~~~g~~~al~~m~~Ge~~~i~vp~ 82 (112)
++..|.+.+ ++++|+.+.+.+-.
T Consensus 11 iPk~~~~~l-~l~~Gd~v~i~~~~ 33 (47)
T PF04014_consen 11 IPKEIREKL-GLKPGDEVEIEVEG 33 (47)
T ss_dssp E-HHHHHHT-TSSTTTEEEEEEET
T ss_pred CCHHHHHHc-CCCCCCEEEEEEeC
Confidence 345666666 88889988887654
No 54
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=24.12 E-value=89 Score=16.93 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=11.4
Q ss_pred ccHHHHhc--CCCCCcEEEE
Q 033778 61 KGWDEGVM--GMQVGEVARL 78 (112)
Q Consensus 61 ~g~~~al~--~m~~Ge~~~i 78 (112)
-|++++|. |.+.||.+.|
T Consensus 43 ~Gv~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 43 MGVEKALRKAGAKEGDTVRI 62 (69)
T ss_dssp TTHHHHHHTTT--TT-EEEE
T ss_pred CCHHHHHHHcCCCCCCEEEE
Confidence 47888885 7778888876
No 55
>PRK11018 hypothetical protein; Provisional
Probab=23.50 E-value=1.2e+02 Score=16.75 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=18.6
Q ss_pred HHHHhcCCCCCcEEEEEECCCC
Q 033778 63 WDEGVMGMQVGEVARLRCSPDY 84 (112)
Q Consensus 63 ~~~al~~m~~Ge~~~i~vp~~~ 84 (112)
..++|..|..|+...+.+....
T Consensus 25 ~kk~l~~l~~G~~L~V~~d~~~ 46 (78)
T PRK11018 25 TLEALPQLKKGEILEVVSDCPQ 46 (78)
T ss_pred HHHHHHhCCCCCEEEEEeCCcc
Confidence 6789999999999999887544
No 56
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=23.19 E-value=2.4e+02 Score=18.86 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=30.7
Q ss_pred CCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCCC---------ccccHHHHhcCCCCCcEEE
Q 033778 14 PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS---------VIKGWDEGVMGMQVGEVAR 77 (112)
Q Consensus 14 ~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~~---------~~~g~~~al~~m~~Ge~~~ 77 (112)
..+++||.|.+++-... +| -..|. ..+|.+|... +..+.+.++..+++|-++.
T Consensus 75 r~l~~GD~v~~d~g~~~-~G---Y~ad~-------~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~~ 136 (228)
T cd01090 75 RKVQRGDILSLNCFPMI-AG---YYTAL-------ERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARCK 136 (228)
T ss_pred cccCCCCEEEEEEeEEE-CC---Eeeee-------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 34899999999987654 54 22222 3445555321 2345566666777665543
No 57
>KOG2847 consensus Phosphate acyltransferase [Lipid transport and metabolism]
Probab=23.19 E-value=85 Score=22.08 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=24.9
Q ss_pred cEEEEeCCCCccccHHHHhcCCCCCcEEEEE
Q 033778 49 PFTFQIGKGSVIKGWDEGVMGMQVGEVARLR 79 (112)
Q Consensus 49 ~~~~~~g~~~~~~g~~~al~~m~~Ge~~~i~ 79 (112)
-+...-|.|-.-.|++.|+..++.|+++.++
T Consensus 126 clPi~RG~GvYQ~gmd~~i~kLn~g~WVHiF 156 (286)
T KOG2847|consen 126 CLPIVRGEGVYQKGMDFAIEKLNDGSWVHIF 156 (286)
T ss_pred eEeeeccCccccccHHHHHHhcCCCCeEEEC
Confidence 4444557777889999999999999998874
No 58
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=23.17 E-value=1.3e+02 Score=15.65 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=18.8
Q ss_pred HHHHhcCCCCCcEEEEEECCCC
Q 033778 63 WDEGVMGMQVGEVARLRCSPDY 84 (112)
Q Consensus 63 ~~~al~~m~~Ge~~~i~vp~~~ 84 (112)
..++|..|..|+...+......
T Consensus 16 ~~~~l~~l~~g~~l~v~~d~~~ 37 (69)
T cd00291 16 TKKALEKLKSGEVLEVLLDDPG 37 (69)
T ss_pred HHHHHhcCCCCCEEEEEecCCc
Confidence 6679999999999999987654
No 59
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=23.00 E-value=3.1e+02 Score=20.19 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=39.7
Q ss_pred CCCCCEEEEEEEEEEeCCC-ceeeEecccCCCCccEEEEeCCCCcc--ccHHHHhcCCCCCcEEEEEECCCCCc
Q 033778 16 PVAGQKVTVHCTGYGKNGD-LSQKFWSTKDPGQQPFTFQIGKGSVI--KGWDEGVMGMQVGEVARLRCSPDYAY 86 (112)
Q Consensus 16 ~~~gd~V~v~y~~~~~~g~-~~~~~~~t~~~~~~~~~~~~g~~~~~--~g~~~al~~m~~Ge~~~i~vp~~~ay 86 (112)
.+.||...+||.+.-..-- ...--++.++..--|..+.. .+.++ .-|++.+.-+..|-+.++++.+-..-
T Consensus 135 aq~gD~LvfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t-~G~iIdDe~~r~lV~plp~G~~lt~I~DSCHSG 207 (362)
T KOG1546|consen 135 AQPGDSLVFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNT-QGPIIDDEIFRILVRPLPKGCKLTAISDSCHSG 207 (362)
T ss_pred CCCCCEEEEEecCCCCcCCCCCCCCCCCCcceeecccccc-cccccchHHHHHHHhccCCCceEEEEeecccCC
Confidence 6789999999998632100 00000111221101333321 23455 35888999999999999988775443
No 60
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=22.96 E-value=1.6e+02 Score=22.52 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=32.3
Q ss_pred CCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEEeCCC--C----ccccHHHHhcCCCCCcEE
Q 033778 14 PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKG--S----VIKGWDEGVMGMQVGEVA 76 (112)
Q Consensus 14 ~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~~g~~--~----~~~g~~~al~~m~~Ge~~ 76 (112)
..++.||.|.|++-... +| -..|.+ +++.+|.. . ...+.+.|+..+++|-+.
T Consensus 232 ~vLk~GDvVkID~G~~v-dG---YiaD~A-------rTv~vg~~~~~L~eAv~eA~~aaI~~~kpGv~~ 289 (470)
T PTZ00053 232 TVLTYDDVCKLDFGTHV-NG---RIIDCA-------FTVAFNPKYDPLLQATKDATNTGIKEAGIDVRL 289 (470)
T ss_pred cEecCCCeEEEEEeEEE-CC---EEEeEE-------EEEEeCHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 34899999999997775 66 555553 33444421 1 234566677777766554
No 61
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=21.86 E-value=95 Score=17.56 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=12.4
Q ss_pred HHHHhcCCCCCcEEEEEECCC
Q 033778 63 WDEGVMGMQVGEVARLRCSPD 83 (112)
Q Consensus 63 ~~~al~~m~~Ge~~~i~vp~~ 83 (112)
-...|..+++|++..|.+..+
T Consensus 36 ~~k~L~~L~pGq~l~f~~d~~ 56 (85)
T PF04225_consen 36 EAKPLTRLKPGQTLEFQLDED 56 (85)
T ss_dssp GT--GGG--TT-EEEEEE-TT
T ss_pred ccchHhhCCCCCEEEEEECCC
Confidence 346789999999999999764
No 62
>PRK05163 rpsL 30S ribosomal protein S12; Validated
Probab=21.82 E-value=2.1e+02 Score=17.74 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=18.3
Q ss_pred CeEEEEeccCCCCCCCCCCEEEEE
Q 033778 2 GIEKQILTPGNGPKPVAGQKVTVH 25 (112)
Q Consensus 2 Gi~~~~~~~G~g~~~~~gd~V~v~ 25 (112)
|-......+|+|..+++.|.|.|.
T Consensus 60 gk~v~AyIPGeGhnlqehs~VLvr 83 (124)
T PRK05163 60 GFEVTAYIPGEGHNLQEHSVVLIR 83 (124)
T ss_pred CCEEEEEcCCCCCCccccCEEEEe
Confidence 445556678888878888888887
No 63
>CHL00051 rps12 ribosomal protein S12
Probab=21.75 E-value=2.1e+02 Score=17.69 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=18.6
Q ss_pred CeEEEEeccCCCCCCCCCCEEEEE
Q 033778 2 GIEKQILTPGNGPKPVAGQKVTVH 25 (112)
Q Consensus 2 Gi~~~~~~~G~g~~~~~gd~V~v~ 25 (112)
|-...-..+|+|..+++.+.|.|.
T Consensus 60 gk~v~AyIPGeGhnlqehs~VLvr 83 (123)
T CHL00051 60 GFEITAYIPGIGHNLQEHSVVLVR 83 (123)
T ss_pred CCEEEEEcCCCCccccccCEEEEe
Confidence 445566778888888888888887
No 64
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=21.55 E-value=99 Score=20.40 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=16.0
Q ss_pred CccccHHHHhcCCCCCcEEEEEECCCC
Q 033778 58 SVIKGWDEGVMGMQVGEVARLRCSPDY 84 (112)
Q Consensus 58 ~~~~g~~~al~~m~~Ge~~~i~vp~~~ 84 (112)
..-|||-..+...+ .+.+++++||+.
T Consensus 141 HQdPgfi~~~~~k~-~~~~RvylPpDA 166 (179)
T PF03894_consen 141 HQDPGFIDHVLNKK-PDVVRVYLPPDA 166 (179)
T ss_dssp G---THHHHHHCC---T-EEEEE-SSH
T ss_pred cCCChHHHHHHhcC-cccceeecCCcH
Confidence 35689999998887 669999999963
No 65
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.50 E-value=3.4e+02 Score=19.99 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=37.7
Q ss_pred CCCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCc---cEEEEeCC--CCccccHHHHhcCCCCCcEEEEE
Q 033778 13 GPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQ---PFTFQIGK--GSVIKGWDEGVMGMQVGEVARLR 79 (112)
Q Consensus 13 g~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~---~~~~~~g~--~~~~~g~~~al~~m~~Ge~~~i~ 79 (112)
.+.+...+.|.++....-.-|+ .+-.-+..+-.. +....+|. ......+-..++.+++|||+.+.
T Consensus 23 ~p~i~~p~eVlv~i~a~GICGS--DvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk~LkVGDrVaiE 92 (354)
T KOG0024|consen 23 IPTITDPDEVLVAIKAVGICGS--DVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVKHLKVGDRVAIE 92 (354)
T ss_pred CCCCCCCCEEEEEeeeEEecCc--cchhhccCCcCccccccccccccccccchhhhcccccccccCCeEEec
Confidence 3446677788887777666553 332222211110 12234452 34566777899999999998864
No 66
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=21.50 E-value=81 Score=17.07 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=11.6
Q ss_pred HhcCCCCCcEEEEEECC
Q 033778 66 GVMGMQVGEVARLRCSP 82 (112)
Q Consensus 66 al~~m~~Ge~~~i~vp~ 82 (112)
.+.++++|+++.|.+.-
T Consensus 39 ~l~~l~~Gd~V~F~~~~ 55 (70)
T PF11604_consen 39 DLAGLKPGDKVRFTFER 55 (70)
T ss_dssp EESS-STT-EEEEEEEE
T ss_pred hhhcCCCCCEEEEEEEE
Confidence 45788999999987753
No 67
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=20.77 E-value=1.6e+02 Score=15.84 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=19.1
Q ss_pred cEEEEeCCCC---ccccHHHHhcCCCCCcEEEEEEC
Q 033778 49 PFTFQIGKGS---VIKGWDEGVMGMQVGEVARLRCS 81 (112)
Q Consensus 49 ~~~~~~g~~~---~~~g~~~al~~m~~Ge~~~i~vp 81 (112)
...+.|..++ +++.|. +.++++|.++.++-.
T Consensus 16 ~~titLdDGksy~lp~ef~--~~~L~~G~kV~V~yd 49 (61)
T PF07076_consen 16 TMTITLDDGKSYKLPEEFD--FDGLKPGMKVVVFYD 49 (61)
T ss_pred ceEEEecCCCEEECCCccc--ccccCCCCEEEEEEE
Confidence 3444444443 334443 788999999887653
No 68
>PF07655 Secretin_N_2: Secretin N-terminal domain; InterPro: IPR011514 This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggests that this family may be functionally analogous to IPR005644 from INTERPRO.; GO: 0009297 pilus assembly, 0019867 outer membrane
Probab=20.69 E-value=51 Score=19.18 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=22.3
Q ss_pred CCCccccHHHHhcCCC--CCcEEEEEECCC
Q 033778 56 KGSVIKGWDEGVMGMQ--VGEVARLRCSPD 83 (112)
Q Consensus 56 ~~~~~~g~~~al~~m~--~Ge~~~i~vp~~ 83 (112)
+..+...|+++|+.|- .++-+.++++|.
T Consensus 68 ~~dfW~~L~~~l~~ilg~~~~Gr~vv~~~q 97 (98)
T PF07655_consen 68 KSDFWEDLQKTLQAILGTPGDGRSVVSNPQ 97 (98)
T ss_pred CCchHHHHHHHHHHHhCCCCCCCEEEeCCC
Confidence 3467889999999888 688888888774
No 69
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=20.54 E-value=1.2e+02 Score=19.12 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=12.5
Q ss_pred CCCCCeEEEEEEEEEe
Q 033778 96 IQPNSVLDFEIQVLQV 111 (112)
Q Consensus 96 ip~~~~l~~~v~l~~v 111 (112)
+|.++.|.+++++.++
T Consensus 100 ~Pgd~~l~~e~~i~~~ 115 (150)
T cd01287 100 TPHNKKVTYEVHIKEV 115 (150)
T ss_pred cCCCEEEEEEEEEEEE
Confidence 4445599999999886
No 70
>PRK04980 hypothetical protein; Provisional
Probab=20.26 E-value=2e+02 Score=17.09 Aligned_cols=75 Identities=9% Similarity=0.067 Sum_probs=40.2
Q ss_pred CeEEEEeccCCCCCCCCCCEEEEEEEEEEeCCCceeeEecccCCCCccEEEE-e------CCCCccccHHHHhcCCCCCc
Q 033778 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQ-I------GKGSVIKGWDEGVMGMQVGE 74 (112)
Q Consensus 2 Gi~~~~~~~G~g~~~~~gd~V~v~y~~~~~~g~~~~~~~~t~~~~~~~~~~~-~------g~~~~~~g~~~al~~m~~Ge 74 (112)
|-+..+++.+.-..++.||.+.+|- +.+| ..+-.-.-..-.+..|. + -++...+-|.+.++.+-+|+
T Consensus 18 GkKTiTiRd~se~~~~~G~~~~V~~---~e~g---~~~c~ieI~sV~~i~f~eLte~hA~qEg~sL~elk~~i~~iYp~~ 91 (102)
T PRK04980 18 GRKTITIRDESESHFKPGDVLRVGT---FEDD---RYFCTIEVLSVSPVTFDELNEKHAEQENMTLPELKQVIAEIYPNL 91 (102)
T ss_pred CCceEEeeCCcccCCCCCCEEEEEE---CCCC---cEEEEEEEEEEEEEehhhCCHHHHHHhCCCHHHHHHHHHHHCCCC
Confidence 5566677777655599999998872 1122 22211000000121111 0 01224677888999998887
Q ss_pred EEEEEECC
Q 033778 75 VARLRCSP 82 (112)
Q Consensus 75 ~~~i~vp~ 82 (112)
....+|..
T Consensus 92 ~~lyvI~f 99 (102)
T PRK04980 92 DQLYVIEF 99 (102)
T ss_pred ceEEEEEE
Confidence 76666544
No 71
>TIGR00981 rpsL_bact ribosomal protein S12, bacterial/organelle. This model recognizes ribosomal protein S12 of Bacteria, mitochondria, and chloroplasts. The homologous ribosomal proteins of Archaea and Eukarya, termed S23 in Eukarya and S12 or S23 in Archaea, score below the trusted cutoff.
Probab=20.19 E-value=2.3e+02 Score=17.53 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=18.3
Q ss_pred CeEEEEeccCCCCCCCCCCEEEEE
Q 033778 2 GIEKQILTPGNGPKPVAGQKVTVH 25 (112)
Q Consensus 2 Gi~~~~~~~G~g~~~~~gd~V~v~ 25 (112)
|-......+|+|..+++.|.|.|.
T Consensus 60 gk~v~AyIPG~Ghnlqehs~VLvr 83 (124)
T TIGR00981 60 GFEVTAYIPGEGHNLQEHSVVLIR 83 (124)
T ss_pred CCEEEEEcCCCCCCccccCEEEEe
Confidence 445556678888778888888887
Done!