Query 033779
Match_columns 112
No_of_seqs 93 out of 95
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 06:11:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3388 Predicted transcriptio 99.6 2.6E-15 5.6E-20 112.9 5.0 76 1-95 1-91 (136)
2 COG5119 Uncharacterized protei 98.8 2.4E-09 5.2E-14 79.3 3.8 47 40-88 8-71 (119)
3 TIGR03454 partition_RepB plasm 98.3 1.2E-06 2.5E-11 72.5 6.4 55 38-92 60-115 (325)
4 smart00470 ParB ParB-like nucl 98.2 2.9E-06 6.3E-11 55.5 4.9 43 44-87 2-45 (89)
5 TIGR00180 parB_part ParB-like 98.2 5E-06 1.1E-10 61.8 6.0 48 41-88 4-52 (187)
6 PRK13866 plasmid partitioning 98.2 4.5E-06 9.7E-11 69.9 6.1 55 37-91 60-116 (336)
7 TIGR03764 ICE_PFGI_1_parB inte 98.1 4E-06 8.6E-11 68.3 5.5 47 41-88 7-54 (258)
8 COG1475 Spo0J Stage 0 sporulat 97.8 2.8E-05 6E-10 57.2 4.6 45 41-85 3-48 (240)
9 PF02195 ParBc: ParB-like nucl 97.8 1.4E-05 3.1E-10 51.6 1.7 43 44-87 2-45 (90)
10 PRK13832 plasmid partitioning 97.4 0.0003 6.5E-09 62.4 5.8 47 41-87 2-50 (520)
11 TIGR03734 PRTRC_parB PRTRC sys 97.0 0.0014 3.1E-08 58.2 5.5 39 50-88 2-40 (554)
12 PRK13698 plasmid-partitioning 96.2 0.0053 1.2E-07 51.6 3.8 33 55-87 78-111 (323)
13 PF12646 DUF3783: Domain of un 53.6 20 0.00043 22.7 3.1 23 59-81 8-30 (58)
14 PLN02465 L-galactono-1,4-lacto 50.8 24 0.00053 31.8 4.2 29 59-87 427-457 (573)
15 cd06592 GH31_glucosidase_KIAA1 48.1 20 0.00044 28.6 3.0 28 58-87 25-52 (303)
16 PF08212 Lipocalin_2: Lipocali 47.2 23 0.0005 25.0 2.9 24 55-78 111-134 (143)
17 TIGR01676 GLDHase galactonolac 46.7 33 0.00071 30.9 4.3 28 60-87 398-427 (541)
18 KOG3388 Predicted transcriptio 46.5 2.2 4.8E-05 32.8 -2.5 36 35-71 33-68 (136)
19 cd06595 GH31_xylosidase_XylS-l 45.1 22 0.00048 28.2 2.8 27 59-87 21-47 (292)
20 cd06597 GH31_transferase_CtsY 41.8 29 0.00062 28.5 3.0 27 59-87 20-46 (340)
21 cd06603 GH31_GANC_GANAB_alpha 41.7 36 0.00078 27.6 3.5 29 58-88 19-47 (339)
22 cd06591 GH31_xylosidase_XylS X 40.0 30 0.00064 27.9 2.8 27 59-87 20-46 (319)
23 cd06593 GH31_xylosidase_YicI Y 40.0 39 0.00085 26.6 3.4 28 58-87 19-46 (308)
24 cd06604 GH31_glucosidase_II_Ma 38.8 41 0.00088 27.2 3.4 28 59-88 20-47 (339)
25 PF11148 DUF2922: Protein of u 36.8 56 0.0012 21.0 3.3 21 59-79 25-45 (69)
26 cd02062 Nitro_FMN_reductase Pr 36.7 1.2E+02 0.0025 19.6 5.3 34 52-86 8-44 (122)
27 cd06589 GH31 The enzymes of gl 35.6 52 0.0011 25.6 3.5 28 59-88 20-47 (265)
28 cd06602 GH31_MGAM_SI_GAA This 35.5 39 0.00085 27.6 2.9 27 59-87 20-46 (339)
29 PLN00197 beta-amylase; Provisi 34.6 70 0.0015 29.6 4.5 68 35-105 102-174 (573)
30 PLN02803 beta-amylase 33.7 75 0.0016 29.3 4.6 67 36-105 83-154 (548)
31 cd06601 GH31_lyase_GLase GLase 32.8 43 0.00094 27.7 2.7 28 59-88 20-47 (332)
32 PRK06163 hypothetical protein; 32.5 1E+02 0.0022 23.6 4.6 41 36-81 161-202 (202)
33 cd06594 GH31_glucosidase_YihQ 32.0 55 0.0012 26.5 3.2 25 61-87 21-45 (317)
34 COG5005 Mu-like prophage prote 31.8 42 0.0009 26.0 2.3 21 52-75 113-133 (140)
35 cd06598 GH31_transferase_CtsZ 31.6 49 0.0011 26.6 2.8 27 59-87 20-46 (317)
36 PF03235 DUF262: Protein of un 31.2 61 0.0013 22.9 3.0 24 51-74 14-37 (221)
37 cd06600 GH31_MGAM-like This fa 31.0 66 0.0014 25.9 3.5 27 59-87 20-46 (317)
38 cd03738 SOCS_SOCS4 SOCS (suppr 28.8 1.1E+02 0.0024 20.2 3.7 34 48-91 21-55 (56)
39 TIGR03824 FlgM_jcvi flagellar 28.6 43 0.00094 22.7 1.8 17 58-74 61-77 (95)
40 PF14487 DUF4433: Domain of un 27.9 47 0.001 24.8 2.0 46 36-85 156-201 (205)
41 cd04886 ACT_ThrD-II-like C-ter 27.8 71 0.0015 18.3 2.4 19 59-77 51-69 (73)
42 PRK10810 anti-sigma28 factor F 27.7 56 0.0012 23.7 2.3 21 57-77 56-76 (98)
43 cd06599 GH31_glycosidase_Aec37 27.1 65 0.0014 25.9 2.8 25 61-87 27-51 (317)
44 PF13812 PPR_3: Pentatricopept 26.6 99 0.0022 15.6 2.7 21 59-79 14-34 (34)
45 PLN02705 beta-amylase 26.3 1.3E+02 0.0027 28.6 4.8 64 39-105 247-315 (681)
46 TIGR00676 fadh2 5,10-methylene 26.2 83 0.0018 24.9 3.2 36 58-93 165-200 (272)
47 PLN02801 beta-amylase 24.8 1.2E+02 0.0027 27.7 4.4 68 35-105 12-84 (517)
48 PF13167 GTP-bdg_N: GTP-bindin 23.4 44 0.00096 23.5 1.1 57 37-94 19-75 (95)
49 PRK05417 glutathione-dependent 22.7 86 0.0019 24.7 2.7 25 59-84 146-170 (191)
50 TIGR03846 sulfopy_beta sulfopy 22.1 1.5E+02 0.0032 22.1 3.7 36 37-72 145-180 (181)
51 PLN02925 4-hydroxy-3-methylbut 22.0 86 0.0019 29.8 2.9 22 61-89 709-730 (733)
52 PRK10477 outer membrane lipopr 21.9 1.2E+02 0.0025 22.5 3.1 24 55-78 142-165 (177)
53 PF13801 Metal_resist: Heavy-m 21.5 1.2E+02 0.0026 19.3 2.8 17 58-74 82-98 (125)
54 PF12229 PG_binding_4: Putativ 21.5 63 0.0014 20.6 1.4 28 58-85 48-75 (114)
55 PRK10426 alpha-glucosidase; Pr 21.4 1.1E+02 0.0024 27.6 3.4 25 61-87 219-243 (635)
56 PLN02905 beta-amylase 21.0 1.1E+02 0.0024 29.0 3.4 64 39-105 265-333 (702)
57 PF04316 FlgM: Anti-sigma-28 f 20.7 1E+02 0.0022 19.1 2.3 17 58-74 23-39 (57)
58 PF10523 BEN: BEN domain; Int 20.1 1.4E+02 0.003 18.5 2.8 18 58-75 36-53 (79)
59 cd00537 MTHFR Methylenetetrahy 20.1 1.3E+02 0.0029 23.3 3.2 37 58-94 168-204 (274)
No 1
>KOG3388 consensus Predicted transcription regulator/nuclease, contains ParB domain [Replication, recombination and repair]
Probab=99.57 E-value=2.6e-15 Score=112.93 Aligned_cols=76 Identities=30% Similarity=0.546 Sum_probs=65.1
Q ss_pred CcceeEEeccCCcccccceEEeccCCC-CCCCCCCCCCCCCeEEecccccccCCCCCCCCCCHHHHHHHHHHHHh-----
Q 033779 1 MANFVVQLPKTNSFNLKRFCVSASSNG-NPPGSSESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQ----- 74 (112)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~s~g-~~~~~~~ae~~G~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre----- 74 (112)
|||.++|+|.+ +|+|++|++|++ .++ +++||++|.||++ +++|++|+++||+|++.
T Consensus 1 ~~~~~~r~~~s----~~s~~~S~~S~s~~~p------------v~~~mSei~rPi~--pvLd~qKi~slm~Tmkn~~~c~ 62 (136)
T KOG3388|consen 1 MANLMMRLPIS----LRSFSTSAHSSSGSPP------------VEGPMSEIVRPIP--PVLDLQKIRSLMETMKNDQNCV 62 (136)
T ss_pred Cchhhhhcchh----hhhheeehhccCCCCc------------eecchhhcccCCC--cccCHHHHHHHHHHhcCCCccc
Confidence 89999999999 999999988664 444 7899999999998 89999999999887765
Q ss_pred ---------cCCCCCeeeecCCCCCcccEE
Q 033779 75 ---------IGLQVPVRTNHPPPPRAVNLI 95 (112)
Q Consensus 75 ---------~GLr~PIDVleV~p~~~~n~~ 95 (112)
.|+++||||+|+. -+|+.+.
T Consensus 63 les~d~~~~aGelpPiDvl~v~-~~G~~~Y 91 (136)
T KOG3388|consen 63 LESEDSIRQAGELPPIDVLEVD-SEGGDYY 91 (136)
T ss_pred hhhHHHHHhcCCCCCceEEEEe-cCCceEE
Confidence 6999999999998 5565543
No 2
>COG5119 Uncharacterized protein, contains ParB-like nuclease domain [General function prediction only]
Probab=98.85 E-value=2.4e-09 Score=79.26 Aligned_cols=47 Identities=36% Similarity=0.494 Sum_probs=41.0
Q ss_pred CeEEecccccccCCCCCCCCCCHHHHHHHHHHH---------------HhcCCCCCeeee--cCCC
Q 033779 40 PVILELPLDKIRRPLMRTRANDQNKVKELMDSI---------------QQIGLQVPVRTN--HPPP 88 (112)
Q Consensus 40 ~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SI---------------re~GLr~PIDVl--eV~p 88 (112)
..++||||++|+||++ +++|+.||+++|++. .+.|-++||||+ ++++
T Consensus 8 v~~~EiplseirRPlp--pvlDp~Kv~am~~tM~g~t~~~sc~l~e~~a~aGelpPvDVL~~~v~G 71 (119)
T COG5119 8 VNIQEIPLSEIRRPLP--PVLDPNKVNAMMETMTGKTPPASCGLTEEDAAAGELPPVDVLTFEVDG 71 (119)
T ss_pred ccceeccHHHhhcCCC--CCCCHHHHHHHHHHhcCCCCCccccchHhHHhcCCCCCceeEEEEecC
Confidence 4689999999999999 899999999997665 667999999999 5554
No 3
>TIGR03454 partition_RepB plasmid partitioning protein RepB. Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently.
Probab=98.34 E-value=1.2e-06 Score=72.52 Aligned_cols=55 Identities=27% Similarity=0.471 Sum_probs=46.8
Q ss_pred CCCeEEecccccccCCCCCCC-CCCHHHHHHHHHHHHhcCCCCCeeeecCCCCCcc
Q 033779 38 SGPVILELPLDKIRRPLMRTR-ANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRAV 92 (112)
Q Consensus 38 ~G~vV~EVPL~~I~RP~~R~r-vlDeeKVqELM~SIre~GLr~PIDVleV~p~~~~ 92 (112)
.|-.|.+||.+.|+....++| .+|++++++|.+||+++|+++||-|+..+...|.
T Consensus 60 ~g~~v~eldp~~I~~s~~~dR~~~d~~~~~eL~~SIr~~Gq~~PIlVR~~p~~~gr 115 (325)
T TIGR03454 60 EGETVVELDPALIDPSFVRDRLDSDDEAFADLVESIRENGQQVPILVRPHPEAEGR 115 (325)
T ss_pred CCCceEEeCHHHcCCCCCCCCCCCCHHHHHHHHHHHHHhCCcCCeEEEECCCCCCC
Confidence 488899999999999444444 8899999999999999999999999987654444
No 4
>smart00470 ParB ParB-like nuclease domain. Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.
Probab=98.21 E-value=2.9e-06 Score=55.52 Aligned_cols=43 Identities=28% Similarity=0.497 Sum_probs=37.8
Q ss_pred ecccccccC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 44 ELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 44 EVPL~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
+||+++|.. |.+++.. |++++++|.+||++.|..+||.|.+.+
T Consensus 2 ~i~i~~i~~~~~n~r~~-~~~~~~~l~~si~~~G~~~Pi~v~~~~ 45 (89)
T smart00470 2 EVPIEKLRPNPDQPRLT-SEESLEELAESIKENGLLQPIIVRPND 45 (89)
T ss_pred cccHHHeecCCCCCCcC-CHHHHHHHHHHHHHhCCccCeEEEecC
Confidence 689999995 7764445 999999999999999999999999865
No 5
>TIGR00180 parB_part ParB-like partition proteins. This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.
Probab=98.16 E-value=5e-06 Score=61.82 Aligned_cols=48 Identities=21% Similarity=0.443 Sum_probs=42.4
Q ss_pred eEEecccccccC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCCC
Q 033779 41 VILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPPP 88 (112)
Q Consensus 41 vV~EVPL~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~p 88 (112)
.+.++|++.|.. |..++..++++++++|.+||++.|+.+||-|+..+.
T Consensus 4 ~~~~ip~~~l~~~~~n~R~~~~~~~i~~L~~SI~~~G~~~Pi~V~~~~~ 52 (187)
T TIGR00180 4 GLIEIDIDLLQPNPYQPRKDFSEESLAELIESIKEQGQLQPILVRKHPD 52 (187)
T ss_pred eeEEeeHHHccCCCCCCCCCCCHHHHHHHHHHHHHhCCccCeEEEECCC
Confidence 367899999998 776556899999999999999999999999998764
No 6
>PRK13866 plasmid partitioning protein RepB; Provisional
Probab=98.15 E-value=4.5e-06 Score=69.93 Aligned_cols=55 Identities=27% Similarity=0.392 Sum_probs=46.7
Q ss_pred CCCCeEEecccccccCCCCCCC-CCC-HHHHHHHHHHHHhcCCCCCeeeecCCCCCc
Q 033779 37 GSGPVILELPLDKIRRPLMRTR-AND-QNKVKELMDSIQQIGLQVPVRTNHPPPPRA 91 (112)
Q Consensus 37 ~~G~vV~EVPL~~I~RP~~R~r-vlD-eeKVqELM~SIre~GLr~PIDVleV~p~~~ 91 (112)
+.|-.|.||+.+.|+.-+.+|| .+| .++++||.+||+++|+++||-|+..+...|
T Consensus 60 ~~g~~v~eid~~~I~~s~~~dRl~~d~d~~~~eL~~SI~~~Gq~~PIlVRp~p~~~g 116 (336)
T PRK13866 60 AAGEAVVSLDPSMIDGSPIADRLPADVDPKFEQLEASISQEGQQVPILVRPHPEAAG 116 (336)
T ss_pred hCCCeEEEeCHHHccCCcCCCCcCCCccHHHHHHHHHHHHhCCcCCeEEEECCCCCC
Confidence 3888999999999999655577 665 479999999999999999999999875444
No 7
>TIGR03764 ICE_PFGI_1_parB integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.
Probab=98.15 E-value=4e-06 Score=68.30 Aligned_cols=47 Identities=23% Similarity=0.361 Sum_probs=42.0
Q ss_pred eEEecccccccC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCCC
Q 033779 41 VILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPPP 88 (112)
Q Consensus 41 vV~EVPL~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~p 88 (112)
....||+++|.+ |.++|..+|++ +++|.+||+++|+++||.|...++
T Consensus 7 ~~~~l~Id~I~Pn~~qPR~~fd~~-l~eLa~SIre~Gl~qPI~Vr~~p~ 54 (258)
T TIGR03764 7 TPMVLTLDQLRPYEDNPRTTRNPK-YDEIKASIRERGLDQPPKVTRRPG 54 (258)
T ss_pred ceEEEEHHHcccCCCCCCCCCCHH-HHHHHHHHHHhCCcCCeEEEecCC
Confidence 356799999999 88777889988 999999999999999999998765
No 8
>COG1475 Spo0J Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]
Probab=97.83 E-value=2.8e-05 Score=57.23 Aligned_cols=45 Identities=27% Similarity=0.446 Sum_probs=40.4
Q ss_pred eEEecccccccC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeec
Q 033779 41 VILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNH 85 (112)
Q Consensus 41 vV~EVPL~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr~PIDVle 85 (112)
.+.++++..|.. |+++++.+|++++++|.+||+++|+.+||-|..
T Consensus 3 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~l~~SI~~~G~~~Pi~v~~ 48 (240)
T COG1475 3 RVVEIDIVLIAPNPLQPRKKFDEESLEELAASIKEFGLIQPIVVRP 48 (240)
T ss_pred cceecCHHHcCCCCCCCCccCCHHHHHHHHHHHHHhCCcCCeeEee
Confidence 567889999998 666666899999999999999999999999996
No 9
>PF02195 ParBc: ParB-like nuclease domain; InterPro: IPR003115 Proteins containing this domain, appear to be related to the Escherichia coli plasmid protein ParB, which preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.; GO: 0003677 DNA binding; PDB: 1VK1_A 3CYI_A 1YZS_A 2RII_X 2B6F_A 3HY2_Y 1XW4_X 1XW3_A 1VZ0_G 1R71_C ....
Probab=97.75 E-value=1.4e-05 Score=51.61 Aligned_cols=43 Identities=28% Similarity=0.506 Sum_probs=34.9
Q ss_pred ecccccccC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 44 ELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 44 EVPL~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
+||++.|.. +...+.. +++++++|.+||++.|+.+||.|...+
T Consensus 2 ~v~~~~l~~~~~~~r~~-~~~~~~~l~~si~~~G~~~Pi~v~~~~ 45 (90)
T PF02195_consen 2 EVPISKLKPSPDNPRKD-DPEKIEELAESIKENGQLQPIIVRRRN 45 (90)
T ss_dssp EEEGGGEE-SBS-HHHH-HHHHHHHHHHHHHHHGCSS-EEEEEEC
T ss_pred eEeHHHCCCCCCCCCCC-CHHHHHHHHHHHHhcCCCCCcEEEeec
Confidence 689999994 5532224 899999999999999999999999987
No 10
>PRK13832 plasmid partitioning protein; Provisional
Probab=97.41 E-value=0.0003 Score=62.37 Aligned_cols=47 Identities=13% Similarity=0.223 Sum_probs=40.6
Q ss_pred eEEecccccccC-CCCCCCCC-CHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 41 VILELPLDKIRR-PLMRTRAN-DQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 41 vV~EVPL~~I~R-P~~R~rvl-DeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
.+.+||++.|.. |.++|+.+ |++++++|.+||+++|+.+||-|+..+
T Consensus 2 ~L~~Id~~~L~~nP~NpRr~~~~~e~I~ELAaSIr~~GLLQPIiVRp~~ 50 (520)
T PRK13832 2 ELRKVDPRALKDNPDNTRRSKSSPQSDALLLATIKAVGIVQPPVVSPEE 50 (520)
T ss_pred eeEEecHHHCCcCCCCCCCCCCCHHHHHHHHHHHHHhCCccCcEEEecC
Confidence 467899999998 88666654 689999999999999999999999754
No 11
>TIGR03734 PRTRC_parB PRTRC system ParB family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family the member related to ParB, and is designated PRTRC system ParB family protein.
Probab=96.97 E-value=0.0014 Score=58.21 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=34.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCCC
Q 033779 50 IRRPLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPPP 88 (112)
Q Consensus 50 I~RP~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~p 88 (112)
|+.+..+|+.+|+++++||.+||+++|+.+||-|+..+.
T Consensus 2 i~~~~NPRk~~d~~~IeELA~SIr~~GlLQPIlVRp~~~ 40 (554)
T TIGR03734 2 IVPGNNPRRYFDPAEMAELVESIRAKGVLQPILVRPVPG 40 (554)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCccCeEEEEcCC
Confidence 566777777999999999999999999999999996643
No 12
>PRK13698 plasmid-partitioning protein; Provisional
Probab=96.21 E-value=0.0053 Score=51.60 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=30.2
Q ss_pred CCCC-CCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 55 MRTR-ANDQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 55 ~R~r-vlDeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
.|+. .|||+++++|.+||+++|+++||-|++++
T Consensus 78 ~R~Q~~f~e~sL~dL~~SIk~~G~~qPiivR~~~ 111 (323)
T PRK13698 78 ERDQELLTEDSLDDLIPSFLLTGQQTPAFGRRVS 111 (323)
T ss_pred CcchhhCCHHHHHHHHHHHHHhCCCcCeEEEEeC
Confidence 5666 99999999999999999999999999973
No 13
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=53.56 E-value=20 Score=22.69 Aligned_cols=23 Identities=13% Similarity=0.577 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCe
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPV 81 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PI 81 (112)
.++.+++..++..+|+.|+..|+
T Consensus 8 g~~~~el~~~l~~~r~~~~~~~~ 30 (58)
T PF12646_consen 8 GFSGEELDKFLDALRKAGIPIPL 30 (58)
T ss_pred CCCHHHHHHHHHHHHHcCCCcce
Confidence 57899999999999999995444
No 14
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=50.84 E-value=24 Score=31.84 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCC--CeeeecCC
Q 033779 59 ANDQNKVKELMDSIQQIGLQV--PVRTNHPP 87 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~--PIDVleV~ 87 (112)
-.|.+.+++|++-|++.+... ||||+|++
T Consensus 427 ~~~~~~l~el~~~i~~~~~~~~fPiE~R~ta 457 (573)
T PLN02465 427 MKDLEFMEELLALIEKEGIPAPAPIEQRWTA 457 (573)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCceEEEeec
Confidence 378899999999999998874 99999974
No 15
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.06 E-value=20 Score=28.62 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 58 RANDQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 58 rvlDeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
...++++|.++++.+++.|+ |+|+++++
T Consensus 25 ~~~s~~~v~~~~~~~~~~~i--P~d~i~iD 52 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGF--PNGQIEID 52 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCC--CCCeEEeC
Confidence 47899999999999999887 88888874
No 16
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=47.20 E-value=23 Score=24.99 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=18.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++.++++++-+++.|..
T Consensus 111 sR~p~~~~~~~~~~~~~~~~~G~d 134 (143)
T PF08212_consen 111 SRTPQLSEETYAEILDRAKQQGYD 134 (143)
T ss_dssp ESSSS--HHHHHHHHHHHHHTT--
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCC
Confidence 688999999999999999998863
No 17
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=46.66 E-value=33 Score=30.89 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhcCCCC--CeeeecCC
Q 033779 60 NDQNKVKELMDSIQQIGLQV--PVRTNHPP 87 (112)
Q Consensus 60 lDeeKVqELM~SIre~GLr~--PIDVleV~ 87 (112)
.+.+.++||.+-|++.+... ||||+|++
T Consensus 398 ~~~~~l~el~~~i~~~~~~~~fPiEvR~ta 427 (541)
T TIGR01676 398 KDIEYIEELKQLIEKENIPAPAPIEQRWTA 427 (541)
T ss_pred chHHHHHHHHHHHHhcCCCCCCCeEEEeec
Confidence 68999999999999998875 99999974
No 18
>KOG3388 consensus Predicted transcription regulator/nuclease, contains ParB domain [Replication, recombination and repair]
Probab=46.55 E-value=2.2 Score=32.76 Aligned_cols=36 Identities=50% Similarity=0.459 Sum_probs=32.1
Q ss_pred CCCCCCeEEecccccccCCCCCCCCCCHHHHHHHHHH
Q 033779 35 SRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDS 71 (112)
Q Consensus 35 ae~~G~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~S 71 (112)
++..++..-.+++..|+ ++.++...|+.++.|++|+
T Consensus 33 Sei~rPi~pvLd~qKi~-slm~Tmkn~~~c~les~d~ 68 (136)
T KOG3388|consen 33 SEIVRPIPPVLDLQKIR-SLMETMKNDQNCVLESEDS 68 (136)
T ss_pred hhcccCCCcccCHHHHH-HHHHHhcCCCccchhhHHH
Confidence 56788899999999999 8998999999999999883
No 19
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.09 E-value=22 Score=28.21 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
--++++|.++++.+++.|+ |.||++++
T Consensus 21 y~s~~ev~~v~~~~r~~~i--P~D~i~lD 47 (292)
T cd06595 21 PYSDEEYLALMDRFKKHNI--PLDVLVID 47 (292)
T ss_pred CCCHHHHHHHHHHHHHhCC--CccEEEEe
Confidence 4588999999999999765 89998874
No 20
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.79 E-value=29 Score=28.48 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
-.++++|.++++.+++.|+ |+||+++.
T Consensus 20 Y~~~~ev~~v~~~~~~~~i--P~d~i~lD 46 (340)
T cd06597 20 WDTQAEVMRQMDAHEEHGI--PVTVVVIE 46 (340)
T ss_pred CCCHHHHHHHHHHHHHcCC--CeeEEEEe
Confidence 4589999999999999765 99998775
No 21
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=41.73 E-value=36 Score=27.55 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCeeeecCCC
Q 033779 58 RANDQNKVKELMDSIQQIGLQVPVRTNHPPP 88 (112)
Q Consensus 58 rvlDeeKVqELM~SIre~GLr~PIDVleV~p 88 (112)
.-.++++|.++++.+++.|+ |+|+++++.
T Consensus 19 ~y~~~~ev~~~~~~~~~~~i--P~d~i~lD~ 47 (339)
T cd06603 19 NYKDQEDVKEVDAGFDEHDI--PYDVIWLDI 47 (339)
T ss_pred CCCCHHHHHHHHHHHHHcCC--CceEEEECh
Confidence 46689999999999999755 999998763
No 22
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=39.96 E-value=30 Score=27.86 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
-.++++|+++++.+++.++ |+|+++++
T Consensus 20 y~~~~ev~~~~~~~~~~~i--P~d~i~lD 46 (319)
T cd06591 20 YKTQEELLDVAKEYRKRGI--PLDVIVQD 46 (319)
T ss_pred CCCHHHHHHHHHHHHHhCC--CccEEEEe
Confidence 3589999999999999655 99999876
No 23
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=39.96 E-value=39 Score=26.61 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 58 RANDQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 58 rvlDeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
+-.+++++.++++-+++.|+ |+|+++++
T Consensus 19 ~y~~~~~v~~~~~~~~~~~i--P~d~~~lD 46 (308)
T cd06593 19 FYYDEEEVNEFADGMRERNL--PCDVIHLD 46 (308)
T ss_pred cCCCHHHHHHHHHHHHHcCC--CeeEEEEe
Confidence 35799999999999999765 88888775
No 24
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=38.79 E-value=41 Score=27.18 Aligned_cols=28 Identities=14% Similarity=0.219 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeecCCC
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTNHPPP 88 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVleV~p 88 (112)
-.++++|.++++.+++.|+ |+|++|++.
T Consensus 20 y~~~~~v~~~~~~~~~~~i--P~d~i~lD~ 47 (339)
T cd06604 20 YYPEEEVREIADEFRERDI--PCDAIYLDI 47 (339)
T ss_pred CCCHHHHHHHHHHHHHhCC--CcceEEECc
Confidence 4589999999999999654 999999863
No 25
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=36.80 E-value=56 Score=20.99 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCC
Q 033779 59 ANDQNKVKELMDSIQQIGLQV 79 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~ 79 (112)
.+++++|+.+|+.|-+.++-.
T Consensus 25 ~lt~~~V~~~m~~ii~~~vf~ 45 (69)
T PF11148_consen 25 DLTEAEVKAAMQAIIAKKVFA 45 (69)
T ss_pred CCCHHHHHHHHHHHHHhCCee
Confidence 899999999999999976543
No 26
>cd02062 Nitro_FMN_reductase Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.
Probab=36.72 E-value=1.2e+02 Score=19.61 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=26.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhc---CCCCCeeeecC
Q 033779 52 RPLMRTRANDQNKVKELMDSIQQI---GLQVPVRTNHP 86 (112)
Q Consensus 52 RP~~R~rvlDeeKVqELM~SIre~---GLr~PIDVleV 86 (112)
|.+. +..+|++++++|++..+.. +-.+|.++..+
T Consensus 8 R~f~-~~~i~~~~l~~l~~~~~~aPs~~n~qp~~~~~v 44 (122)
T cd02062 8 RKFT-DEPVPEEVLEKILEAARYAPSGGNLQPWRFVVV 44 (122)
T ss_pred ccCC-CCCCCHHHHHHHHHHHHhCCCcCCCCCEEEEEE
Confidence 3453 2489999999999887773 66799988887
No 27
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=35.56 E-value=52 Score=25.56 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeecCCC
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTNHPPP 88 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVleV~p 88 (112)
-.++++|.++++.+++.++ |+|+.+++.
T Consensus 20 ~~~~~~v~~~~~~~~~~~i--P~d~~~lD~ 47 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDI--PLDGFVLDD 47 (265)
T ss_pred CCCHHHHHHHHHHHHHcCC--CccEEEECc
Confidence 5789999999999999765 899998754
No 28
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=35.51 E-value=39 Score=27.62 Aligned_cols=27 Identities=19% Similarity=0.491 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
-.++++|.++++.+++.++ |+|++|++
T Consensus 20 y~~~~~v~~~~~~~r~~~i--P~d~i~lD 46 (339)
T cd06602 20 YKNVDEVKEVVENMRAAGI--PLDVQWND 46 (339)
T ss_pred CCCHHHHHHHHHHHHHhCC--CcceEEEC
Confidence 3578999999999999654 99998875
No 29
>PLN00197 beta-amylase; Provisional
Probab=34.58 E-value=70 Score=29.60 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=51.1
Q ss_pred CCCCCCeEEecccccccCCCCCCCCCCHHHHHHHHHHHHhcCCC-CCeeeec--CC--CCCcccEEEeeehhhhhh
Q 033779 35 SRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPVRTNH--PP--PPRAVNLIILVEIFSLAK 105 (112)
Q Consensus 35 ae~~G~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre~GLr-~PIDVle--V~--p~~~~n~~~~~~~~~~~~ 105 (112)
..+.-++...+||+.|..--. ..|+++++.=...+|..|.- .=+||-| |+ +|+--|.----|.|.++|
T Consensus 102 ~~~~vpvyVMLPLd~V~~~~~---l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr 174 (573)
T PLN00197 102 KGKGVPVYVMMPLDSVTMGNT---VNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAK 174 (573)
T ss_pred cCCCeeEEEEeecceeccCCc---ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHH
Confidence 455667899999999975443 88999999988999999987 7889988 43 666666554455555554
No 30
>PLN02803 beta-amylase
Probab=33.69 E-value=75 Score=29.25 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=49.5
Q ss_pred CCCCCeEEecccccccCCCCCCCCCCHHHHHHHHHHHHhcCCC-CCeeeec--CC--CCCcccEEEeeehhhhhh
Q 033779 36 RGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPVRTNH--PP--PPRAVNLIILVEIFSLAK 105 (112)
Q Consensus 36 e~~G~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre~GLr-~PIDVle--V~--p~~~~n~~~~~~~~~~~~ 105 (112)
.+.-++...+||+.|...-. ..++++++.=...+|..|.- .=+||-| |+ +|+.-|-----|.|.++|
T Consensus 83 ~~~vpvyVMlPLd~V~~~~~---~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr 154 (548)
T PLN02803 83 DSGVPVFVMLPLDTVTMGGN---LNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQ 154 (548)
T ss_pred CCceeEEEEeecceeccCCc---ccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHH
Confidence 34456889999999975443 78999999989999999987 7889988 44 566666554555555554
No 31
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=32.77 E-value=43 Score=27.67 Aligned_cols=28 Identities=11% Similarity=0.307 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeecCCC
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTNHPPP 88 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVleV~p 88 (112)
-.++++|.++++..++.++ |+|++|++.
T Consensus 20 Y~~~~ev~~v~~~~r~~~I--P~D~i~lDi 47 (332)
T cd06601 20 YSNRSDLEEVVEGYRDNNI--PLDGLHVDV 47 (332)
T ss_pred CCCHHHHHHHHHHHHHcCC--CCceEEEcC
Confidence 3588999999999999665 999988753
No 32
>PRK06163 hypothetical protein; Provisional
Probab=32.55 E-value=1e+02 Score=23.64 Aligned_cols=41 Identities=27% Similarity=0.665 Sum_probs=27.3
Q ss_pred CCCCCeEEecccccccCCCCCCCCCCHHHHHHH-HHHHHhcCCCCCe
Q 033779 36 RGSGPVILELPLDKIRRPLMRTRANDQNKVKEL-MDSIQQIGLQVPV 81 (112)
Q Consensus 36 e~~G~vV~EVPL~~I~RP~~R~rvlDeeKVqEL-M~SIre~GLr~PI 81 (112)
+..|+.+.||.++. ++...++..++.+++.- |++ .|.++||
T Consensus 161 ~~~~p~lIeV~i~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 202 (202)
T PRK06163 161 SGPGPSFIAVRIDD--KPGVGTTERDPAQIRERFMQG---LGVREPI 202 (202)
T ss_pred hCCCCEEEEEEecC--CCCCCCCCCCHHHHHHHHHHH---hccCCCC
Confidence 34789999998863 23444457888887654 443 3888886
No 33
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=32.03 E-value=55 Score=26.52 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 61 DQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 61 DeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
++++|.++++.+++.|+ |+||+|+.
T Consensus 21 s~~~v~~~~~~~~~~~i--P~d~i~ld 45 (317)
T cd06594 21 GTDKVLEALEKARAAGV--KVAGLWLQ 45 (317)
T ss_pred CHHHHHHHHHHHHHcCC--CeeEEEEc
Confidence 89999999999999665 99999885
No 34
>COG5005 Mu-like prophage protein gpG [General function prediction only]
Probab=31.78 E-value=42 Score=26.04 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=18.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhc
Q 033779 52 RPLMRTRANDQNKVKELMDSIQQI 75 (112)
Q Consensus 52 RP~~R~rvlDeeKVqELM~SIre~ 75 (112)
|||. -++++..|+||+-|++.
T Consensus 113 Rpfl---~l~~~deqei~d~i~~y 133 (140)
T COG5005 113 RPFL---GLTPDDEQEIMDDIQDY 133 (140)
T ss_pred Cccc---ccChhhHHHHHHHHHHH
Confidence 5776 89999999999999985
No 35
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.65 E-value=49 Score=26.62 Aligned_cols=27 Identities=7% Similarity=0.243 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
--++++|.++++.+++.++ |+|+++++
T Consensus 20 y~~~~~v~~~~~~~~~~~i--P~d~i~lD 46 (317)
T cd06598 20 YRNWQEVDDTIKTLREKDF--PLDAAILD 46 (317)
T ss_pred CCCHHHHHHHHHHHHHhCC--CceEEEEe
Confidence 4579999999999999655 99998764
No 36
>PF03235 DUF262: Protein of unknown function DUF262; InterPro: IPR004919 This entry is found in prokaryotic proteins of unknown function.
Probab=31.17 E-value=61 Score=22.90 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHh
Q 033779 51 RRPLMRTRANDQNKVKELMDSIQQ 74 (112)
Q Consensus 51 ~RP~~R~rvlDeeKVqELM~SIre 74 (112)
++.+||.=+=+++++++|++||.+
T Consensus 14 iP~yQR~yvW~~~~~~~Li~si~~ 37 (221)
T PF03235_consen 14 IPDYQRDYVWDEEQIEELIDSILE 37 (221)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHh
Confidence 345698889999999999999954
No 37
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=31.02 E-value=66 Score=25.94 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
-.++++|.++++.+++.+ .|+|++|++
T Consensus 20 y~~~~~v~~~~~~~~~~~--iP~d~i~lD 46 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEG--FPYDVVFLD 46 (317)
T ss_pred CCCHHHHHHHHHHHHHcC--CCcceEEEC
Confidence 458999999999999965 599999875
No 38
>cd03738 SOCS_SOCS4 SOCS (suppressors of cytokine signaling) box of SOCS4-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=28.81 E-value=1.1e+02 Score=20.21 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=27.1
Q ss_pred ccccC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCCCCCc
Q 033779 48 DKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRA 91 (112)
Q Consensus 48 ~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~p~~~ 91 (112)
+.|.+ |+| ..|.+=++|......+.|+|++-|+.
T Consensus 21 ~~I~~LPLP----------~~LK~YLkeY~y~~~~r~~~~~~~~~ 55 (56)
T cd03738 21 DGIDALPIP----------SSMKLYLKEYHYKSKVRVLRIDAPEQ 55 (56)
T ss_pred cccccCCCC----------HHHHHHHHhCCCcceEEeeecCCccc
Confidence 44555 777 56778899999999999999988763
No 39
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=28.60 E-value=43 Score=22.73 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHh
Q 033779 58 RANDQNKVKELMDSIQQ 74 (112)
Q Consensus 58 rvlDeeKVqELM~SIre 74 (112)
+++|++||++|-+.|++
T Consensus 61 p~v~~~kV~~ik~aI~~ 77 (95)
T TIGR03824 61 PDVDAEKVAEIKAAIAN 77 (95)
T ss_pred chhhHHHHHHHHHHHHc
Confidence 48999999999999987
No 40
>PF14487 DUF4433: Domain of unknown function (DUF4433)
Probab=27.89 E-value=47 Score=24.80 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=35.0
Q ss_pred CCCCCeEEecccccccCCCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeec
Q 033779 36 RGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPVRTNH 85 (112)
Q Consensus 36 e~~G~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre~GLr~PIDVle 85 (112)
|+.=++-..||++.|.+ + -+.+++..+++...++..|+++||.|..
T Consensus 156 QAEvLV~~~ip~~~i~~-I---~v~s~~~~~~v~~~l~~~~~~~~V~v~p 201 (205)
T PF14487_consen 156 QAEVLVPDFIPPDYITG-I---GVYSDEVKDQVESLLRAAGHQIPVIVNP 201 (205)
T ss_pred ceeEEEcCcCCHHHceE-E---EECCHHHHHHHHHHHHhcCCCCcEEeCC
Confidence 33445566788888876 2 2678888899999999999999998853
No 41
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.84 E-value=71 Score=18.31 Aligned_cols=19 Identities=11% Similarity=0.494 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 033779 59 ANDQNKVKELMDSIQQIGL 77 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GL 77 (112)
+-|.+.++++++.|++.|.
T Consensus 51 ~~~~~~l~~l~~~l~~~g~ 69 (73)
T cd04886 51 TRGAEHIEEIIAALREAGY 69 (73)
T ss_pred eCCHHHHHHHHHHHHHcCC
Confidence 4567889999999999885
No 42
>PRK10810 anti-sigma28 factor FlgM; Provisional
Probab=27.72 E-value=56 Score=23.72 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 033779 57 TRANDQNKVKELMDSIQQIGL 77 (112)
Q Consensus 57 ~rvlDeeKVqELM~SIre~GL 77 (112)
.+.+|.+||++|...|++=-+
T Consensus 56 s~Did~~KV~~IK~AI~~G~y 76 (98)
T PRK10810 56 SQDINVERVEALKQAIRNGEL 76 (98)
T ss_pred CccccHHHHHHHHHHHHcCCc
Confidence 359999999999999987433
No 43
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=27.08 E-value=65 Score=25.91 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 61 DQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 61 DeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
++++|.++++.+++. ..|+|+.+++
T Consensus 27 ~q~~v~~~~~~~r~~--~iP~d~i~ld 51 (317)
T cd06599 27 AQEALLEFIDKCREH--DIPCDSFHLS 51 (317)
T ss_pred HHHHHHHHHHHHHHc--CCCeeEEEEe
Confidence 389999999999995 5599999875
No 44
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=26.59 E-value=99 Score=15.64 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCC
Q 033779 59 ANDQNKVKELMDSIQQIGLQV 79 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~ 79 (112)
.-|.++..++.+.+++.|++|
T Consensus 14 ~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 14 AGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CCCHHHHHHHHHHHHHhCCCC
Confidence 346788889999999988764
No 45
>PLN02705 beta-amylase
Probab=26.26 E-value=1.3e+02 Score=28.58 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=49.3
Q ss_pred CCeEEecccccccCCCCCCCCCCHHHHHHHHHHHHhcCCC-CCeeeec--CC--CCCcccEEEeeehhhhhh
Q 033779 39 GPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPVRTNH--PP--PPRAVNLIILVEIFSLAK 105 (112)
Q Consensus 39 G~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre~GLr-~PIDVle--V~--p~~~~n~~~~~~~~~~~~ 105 (112)
-+|...+||+.|..--. ..|+++++.=+..+|..|.- .=+||-| |+ +|+--|.----|.|.++|
T Consensus 247 VpVyVMLPLd~V~~~~~---l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr 315 (681)
T PLN02705 247 VPVYVMLAVGIINNFCQ---LVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIR 315 (681)
T ss_pred eeEEEEeecceeccCCc---ccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHH
Confidence 48899999999975443 88999999999999999987 7889988 44 566666555555555554
No 46
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=26.17 E-value=83 Score=24.87 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCeeeecCCCCCccc
Q 033779 58 RANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRAVN 93 (112)
Q Consensus 58 rvlDeeKVqELM~SIre~GLr~PIDVleV~p~~~~n 93 (112)
..+|.+.+.++++.+++.|...||-.--.+.-...+
T Consensus 165 ~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~ 200 (272)
T TIGR00676 165 LFFDNDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQ 200 (272)
T ss_pred cccCHHHHHHHHHHHHHcCCCCCEecccCCcCCHHH
Confidence 489999999999999999999998766555444443
No 47
>PLN02801 beta-amylase
Probab=24.85 E-value=1.2e+02 Score=27.67 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=49.9
Q ss_pred CCCCCCeEEecccccccCCCCCCCCCCHHHHHHHHHHHHhcCCC-CCeeeec--CC--CCCcccEEEeeehhhhhh
Q 033779 35 SRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPVRTNH--PP--PPRAVNLIILVEIFSLAK 105 (112)
Q Consensus 35 ae~~G~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre~GLr-~PIDVle--V~--p~~~~n~~~~~~~~~~~~ 105 (112)
..+.-+|...+||+.+..--. ..|+++++.=...+|..|.. .=+||-| |+ +|+--|-----|.|.++|
T Consensus 12 ~~~~vpvyVMlPLd~V~~~~~---l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr 84 (517)
T PLN02801 12 LANYVPVYVMLPLGVVTADNV---LEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQ 84 (517)
T ss_pred cCCceeEEEeeecceecCCCc---cCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHH
Confidence 445567999999999975444 88999999999999999987 7889988 44 566555444444444443
No 48
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=23.38 E-value=44 Score=23.54 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=33.3
Q ss_pred CCCCeEEecccccccCCCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCCCCCcccE
Q 033779 37 GSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRAVNL 94 (112)
Q Consensus 37 ~~G~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~p~~~~n~ 94 (112)
..|..|.+-=.....+|-+ +--+-..|++||.+-+++.+...=|--.++.|.|--||
T Consensus 19 t~g~~vv~~~~q~~~~~~p-~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNL 75 (95)
T PF13167_consen 19 TAGYEVVGTVVQKRRKPDP-KTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNL 75 (95)
T ss_pred HCCCeEEEEEEecCCCCCc-ceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHH
Confidence 3455544432222333444 22899999999999999876543333334566665554
No 49
>PRK05417 glutathione-dependent formaldehyde-activating enzyme; Provisional
Probab=22.65 E-value=86 Score=24.66 Aligned_cols=25 Identities=16% Similarity=0.449 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeee
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTN 84 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVl 84 (112)
-.|+++|++....+++.||. |-|.|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~-~~~~~ 170 (191)
T PRK05417 146 GTDPEQMDGIRARLKELGLE-PYDCL 170 (191)
T ss_pred CCChHHhHHHHHHHHHcCCC-ccccc
Confidence 68999999999999999986 44443
No 50
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=22.09 E-value=1.5e+02 Score=22.13 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=21.0
Q ss_pred CCCCeEEecccccccCCCCCCCCCCHHHHHHHHHHH
Q 033779 37 GSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSI 72 (112)
Q Consensus 37 ~~G~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SI 72 (112)
..|+.+.|+.++.-..++++..-.-++..+.+|+.+
T Consensus 145 ~~~p~li~v~~~~~~~~~p~~~~~~~~~~~~~~~~~ 180 (181)
T TIGR03846 145 MKGPTFIHVKVKPGNAKVPNIPLSPEEIKERFMEAI 180 (181)
T ss_pred CCCCEEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHh
Confidence 457888888877655544433333444455566655
No 51
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=22.05 E-value=86 Score=29.83 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCeeeecCCCC
Q 033779 61 DQNKVKELMDSIQQIGLQVPVRTNHPPPP 89 (112)
Q Consensus 61 DeeKVqELM~SIre~GLr~PIDVleV~p~ 89 (112)
.++++++|++=||++|. |++|+
T Consensus 709 eeeAvd~LIeLIKe~G~-------Wvdp~ 730 (733)
T PLN02925 709 MEEATDALIQLIKDHGR-------WVDPE 730 (733)
T ss_pred HHHHHHHHHHHHHHcCc-------ccCCC
Confidence 68899999999999997 88775
No 52
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=21.92 E-value=1.2e+02 Score=22.46 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++..+++++..++.|..
T Consensus 142 sR~p~l~~~~~~~~~~~~~~~G~d 165 (177)
T PRK10477 142 SRTPTISDEVKQQMLAVATREGFD 165 (177)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCC
Confidence 678899999999999999998875
No 53
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=21.50 E-value=1.2e+02 Score=19.25 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHHHh
Q 033779 58 RANDQNKVKELMDSIQQ 74 (112)
Q Consensus 58 rvlDeeKVqELM~SIre 74 (112)
..+|++|+.++.+.|.+
T Consensus 82 ~~~D~~~i~a~~~~~~~ 98 (125)
T PF13801_consen 82 PPPDEAAIEALLEEIRE 98 (125)
T ss_dssp SSS-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47899999999888876
No 54
>PF12229 PG_binding_4: Putative peptidoglycan binding domain; InterPro: IPR022029 This domain is found associated with the L,D-transpeptidase domain PF03734 from PFAM. The structure of this domain has been solved and shows a mixed alpha-beta fold composed of nine beta strands and four alpha helices. This domain is usually found to be duplicated. Therefore, it seems likely that this domain acts to bind the two unlinked peptidoglycan chains and bring them into close association so they can be cross linked by the transpeptidase domain. ; PDB: 2HKL_C 1ZAT_A.
Probab=21.46 E-value=63 Score=20.64 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCeeeec
Q 033779 58 RANDQNKVKELMDSIQQIGLQVPVRTNH 85 (112)
Q Consensus 58 rvlDeeKVqELM~SIre~GLr~PIDVle 85 (112)
-.+|++|+++.++.+...-.++|.+-.-
T Consensus 48 ~~~d~~~l~~~v~~~~~~~~~~~~na~~ 75 (114)
T PF12229_consen 48 VSYDEEKLEQYVDELAKEYNTPPVNASI 75 (114)
T ss_dssp EEE-HHHHHHHHHHHHHHH-TTTS-EEE
T ss_pred EEECHHHHHHHHHHHHHHhCcCCcceEE
Confidence 5899999999999998877778876443
No 55
>PRK10426 alpha-glucosidase; Provisional
Probab=21.38 E-value=1.1e+02 Score=27.59 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 61 DQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 61 DeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
.+++|.++++.+++.|+ |+|++|+.
T Consensus 219 ~~~~v~~v~~~~r~~~I--P~d~i~ld 243 (635)
T PRK10426 219 GTEVVQKKLDTMRNAGV--KVNGIWAQ 243 (635)
T ss_pred CHHHHHHHHHHHHHcCC--CeeEEEEe
Confidence 57899999999999654 99999885
No 56
>PLN02905 beta-amylase
Probab=20.98 E-value=1.1e+02 Score=29.01 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=48.0
Q ss_pred CCeEEecccccccCCCCCCCCCCHHHHHHHHHHHHhcCCC-CCeeeec--C--CCCCcccEEEeeehhhhhh
Q 033779 39 GPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPVRTNH--P--PPPRAVNLIILVEIFSLAK 105 (112)
Q Consensus 39 G~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre~GLr-~PIDVle--V--~p~~~~n~~~~~~~~~~~~ 105 (112)
-++...+||+.|...-. ..|.++++.=...+|..|.- .=+||-| | .+|+--|.----|.|.++|
T Consensus 265 VpVyVMLPLd~V~~~~~---l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr 333 (702)
T PLN02905 265 VPVYVMLPLGVINMKCE---LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVR 333 (702)
T ss_pred eeEEEEeecceecCCCc---ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHH
Confidence 36778899999876544 88999999988999999987 7889988 4 3666666555555555554
No 57
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=20.65 E-value=1e+02 Score=19.15 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHh
Q 033779 58 RANDQNKVKELMDSIQQ 74 (112)
Q Consensus 58 rvlDeeKVqELM~SIre 74 (112)
+..|.+||++|-+.|++
T Consensus 23 ~~vr~~kV~~ik~~I~~ 39 (57)
T PF04316_consen 23 PDVRAEKVAEIKAAIAS 39 (57)
T ss_dssp HHCSHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHc
Confidence 48899999999999987
No 58
>PF10523 BEN: BEN domain; InterPro: IPR018379 The BEN domain is found in diverse proteins including: SMAR1 (Scaffold/Matrix attachment region-binding protein 1; also known as BANP), a tumour-suppressor MAR-binding protein that down-regulates Cyclin D1 expression by recruiting HDAC1-mSin3A co-repressor complex at Cyclin D1 promoter locus; SMAR1 is the target of prostaglandin A2 (PGA2) induced growth arrest [, ]. NAC1, a novel member of the POZ/BTB (Pox virus and Zinc finger/Bric-a-bracTramtrack Broad complex), but which varies from other proteins of this class in that it lacks the characteristic DNA-binding motif []. Mod(mdg4) isoform C, the modifier of the mdg4 locus in Drosophila melanogaster (Fruit fly), where mdg4 encodes chromatin proteins which are involved in position effect variegation, establishment of chromatin boundaries, nerve path finding, meiotic chromosome pairing and apoptosis []. Trans-splicing of Mod(mdg4) produces at least 26 transcripts. E5R protein from Chordopoxvirus virosomes, which is found in cytoplasmic sites of viral DNA replication []. Several proteins of polydnaviruses. The BEN domain is predicted to function as an adaptor for the higher-order structuring of chromatin, and recruitment of chromatin modifying factors in transcriptional regulation. It has been suggested to mediate protein-DNA and protein-protein interactions during chromatin organisation and transcription. The presence of BEN domains in a poxviral early virosomal protein and in polydnaviral proteins also suggests a possible role in the organisation of viral DNA during replication or transcription. They are generally linked to other globular domains with functions related to transcriptional regulation and chromatin structure, such as BTB, C4DM, and C2H2 fingers []. This domain is predicted to form an all-alpha fold with four conserved helices. Its conservation pattern revealed several conserved residues, most of which have hydrophobic side-chains and are likely to stabilise the fold through helix-helix packing [].
Probab=20.15 E-value=1.4e+02 Score=18.54 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 033779 58 RANDQNKVKELMDSIQQI 75 (112)
Q Consensus 58 rvlDeeKVqELM~SIre~ 75 (112)
+.+|++||+.+.+-+.+.
T Consensus 36 ~~Ld~~kl~~I~~~v~~~ 53 (79)
T PF10523_consen 36 PQLDPNKLSAIRNYVEER 53 (79)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 489999999999999885
No 59
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=20.09 E-value=1.3e+02 Score=23.33 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCeeeecCCCCCcccE
Q 033779 58 RANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRAVNL 94 (112)
Q Consensus 58 rvlDeeKVqELM~SIre~GLr~PIDVleV~p~~~~n~ 94 (112)
..+|.+++.++++.+++.|...||-.--.+.-...++
T Consensus 168 ~~fd~~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l 204 (274)
T cd00537 168 LFFDNDAFLRFVDRCRAAGITVPIIPGIMPLTSYKQA 204 (274)
T ss_pred ccccHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHH
Confidence 4889999999999999999988987665555444444
Done!