Query 033779
Match_columns 112
No_of_seqs 93 out of 95
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 10:04:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xw3_A Sulfiredoxin; retroredu 99.6 1.6E-15 5.6E-20 107.8 6.4 57 40-98 12-69 (110)
2 1yzs_A Sulfiredoxin; PARB doma 99.6 2E-15 6.7E-20 109.3 6.9 60 37-98 20-80 (121)
3 1vz0_A PARB, chromosome partit 98.2 3.3E-07 1.1E-11 69.6 1.8 47 41-87 22-69 (230)
4 1vk1_A Conserved hypothetical 96.7 0.0013 4.5E-08 50.4 4.0 42 41-86 17-59 (242)
5 2v4x_A JSRV capsid, capsid pro 60.1 0.78 2.7E-05 33.8 -2.0 51 59-110 13-63 (140)
6 1p7n_A GAG polyprotein capsid 57.1 0.95 3.3E-05 34.6 -2.0 71 37-110 21-92 (176)
7 2kgf_A Capsid protein P27; ret 43.3 2.1 7.3E-05 31.4 -2.0 51 59-110 18-68 (140)
8 3mn5_S Protein spire, actin, a 37.0 21 0.00073 21.4 2.1 10 65-74 17-26 (38)
9 1e5p_A Aphrodisin; lipocalin, 32.8 43 0.0015 21.9 3.3 25 55-79 113-137 (151)
10 3tir_A ROUS sarcoma virus caps 32.7 4.5 0.00015 31.5 -1.8 50 59-109 13-62 (226)
11 1ew3_A Allergen EQU C 1; lipoc 31.8 46 0.0016 21.8 3.3 25 55-79 118-142 (159)
12 3o22_A Prostaglandin-H2 D-isom 30.9 48 0.0016 22.0 3.3 24 55-78 122-145 (162)
13 2xst_A Lipocalin 15; transport 30.7 39 0.0013 21.8 2.8 24 55-78 124-147 (161)
14 1dzk_A PIG OBP, odorant-bindin 30.5 49 0.0017 21.6 3.3 25 55-79 119-143 (157)
15 1bj7_A D 2; allergen, lipocali 30.3 46 0.0016 21.9 3.2 25 55-79 118-142 (156)
16 2hlv_A Odorant-binding protein 29.1 53 0.0018 21.7 3.3 25 55-79 120-144 (160)
17 2ekk_A UBA domain from E3 ubiq 28.7 39 0.0013 19.3 2.3 14 57-70 5-18 (47)
18 1epa_A Epididymal retinoic aci 27.8 58 0.002 21.3 3.3 24 55-78 118-141 (164)
19 2hzq_A Apolipoprotein D, APO-D 27.4 65 0.0022 21.7 3.6 24 55-78 128-151 (174)
20 3bx8_A Engineered human lipoca 27.3 58 0.002 21.9 3.3 24 55-78 139-162 (178)
21 3zzp_A TS9, ribosomal protein 26.1 51 0.0017 21.2 2.7 17 58-74 54-70 (77)
22 3q6b_A Outer membrane protein 25.9 57 0.002 22.8 3.2 42 48-89 132-175 (189)
23 3sao_A Extracellular fatty aci 25.8 61 0.0021 21.6 3.2 24 55-78 115-138 (160)
24 1qwd_A Outer membrane lipoprot 25.4 64 0.0022 22.5 3.3 24 55-78 142-165 (177)
25 2ra6_A Trichosurin; lipocalin, 25.1 64 0.0022 21.3 3.2 24 55-78 130-153 (166)
26 3cbc_A Neutrophil gelatinase-a 24.8 68 0.0023 21.9 3.3 24 55-78 159-182 (198)
27 2l5p_A Lipocalin 12; beta barr 24.0 72 0.0025 21.8 3.3 24 55-78 134-157 (184)
28 1exs_A Beta-lactoglobulin; lip 23.7 59 0.002 21.4 2.8 26 55-80 123-148 (160)
29 1gm6_A SAL, salivary lipocalin 23.6 69 0.0024 21.7 3.2 24 55-78 124-147 (175)
30 2a2u_A Protein (alpha-2U-globu 23.2 74 0.0025 21.1 3.2 24 55-78 140-163 (181)
31 1oef_A Apolipoprotein E; glyco 22.9 55 0.0019 17.0 2.0 13 62-74 11-23 (26)
32 3ebw_A PER A 4 allergen; beta 22.8 76 0.0026 21.7 3.2 25 54-78 124-148 (163)
33 1lf7_A Complement protein C8ga 22.5 81 0.0028 21.5 3.3 24 55-78 132-155 (182)
34 1rp3_B Anti sigma factor FLGM; 22.3 42 0.0015 21.9 1.8 17 58-74 53-69 (88)
35 2g3m_A Maltase, alpha-glucosid 22.2 64 0.0022 27.8 3.3 27 59-87 186-212 (693)
36 1beb_A Beta-lactoglobulin; lip 21.7 77 0.0026 20.8 3.0 24 55-78 123-146 (162)
37 2jwk_A Protein TOLR; periplasm 21.6 98 0.0033 18.0 3.2 23 55-77 51-73 (74)
38 1wiv_A UBP14, ubiquitin-specif 21.1 87 0.003 19.8 3.1 21 50-70 17-38 (73)
39 1gka_B Crustacyanin A2 subunit 21.0 60 0.002 21.6 2.3 24 55-78 134-157 (174)
40 3kff_A MUP 4, major urinary pr 20.8 93 0.0032 20.7 3.3 25 55-79 121-145 (162)
41 3s26_A Neutrophil gelatinase-a 20.7 90 0.0031 21.6 3.3 25 55-79 141-165 (190)
42 3nsx_A Alpha-glucosidase; stru 20.6 62 0.0021 27.9 2.9 27 59-87 174-200 (666)
43 1kt6_A RBP, plasma retinol-bin 20.4 70 0.0024 21.5 2.6 25 55-79 138-162 (183)
No 1
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*
Probab=99.59 E-value=1.6e-15 Score=107.82 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=52.5
Q ss_pred CeEEecccccccCCCCCCCCCCHHHHHHHHHHHHhcCCC-CCeeeecCCCCCcccEEEee
Q 033779 40 PVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPVRTNHPPPPRAVNLIILV 98 (112)
Q Consensus 40 ~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre~GLr-~PIDVleV~p~~~~n~~~~~ 98 (112)
..|++|||++|++|+| |++|++||+|||+||+++|++ +||+|+|+++.+++|-..|+
T Consensus 12 ~~v~~IPi~~I~~p~~--~~~d~~kv~eL~~SI~~~Gl~l~PI~Vr~~~g~~~~~~Y~li 69 (110)
T 1xw3_A 12 AAVHNVPLSVLIRPLP--SVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSF 69 (110)
T ss_dssp EEEEEEEGGGEECCSC--CCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECC
T ss_pred ceEEEeCHHHccCCCC--CccCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcEEEE
Confidence 4799999999999999 599999999999999999998 89999999998888876655
No 2
>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A*
Probab=99.59 E-value=2e-15 Score=109.33 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=54.1
Q ss_pred CCCCeEEecccccccCCCCCCCCCCHHHHHHHHHHHHhcCCC-CCeeeecCCCCCcccEEEee
Q 033779 37 GSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPVRTNHPPPPRAVNLIILV 98 (112)
Q Consensus 37 ~~G~vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre~GLr-~PIDVleV~p~~~~n~~~~~ 98 (112)
..-..|++|||++|+||++ |++|++||+|||+||+++||+ +||||+|+++.+|+|-..++
T Consensus 20 ~~~~~i~~IPl~~I~~p~~--r~~d~~kv~eL~eSI~~~Gl~~~PI~V~~~~g~~gg~~Y~l~ 80 (121)
T 1yzs_A 20 GRIAAVHNVPLSVLIRPLP--SVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSF 80 (121)
T ss_dssp SCCCCEEEEEGGGEECCCC--CCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECC
T ss_pred CCcceEEEeeHHHeeCCCC--CcCCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCceEEEE
Confidence 3445889999999999998 699999999999999999998 89999999998888876665
No 3
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=98.22 E-value=3.3e-07 Score=69.57 Aligned_cols=47 Identities=32% Similarity=0.468 Sum_probs=41.9
Q ss_pred eEEecccccccC-CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 41 VILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 41 vV~EVPL~~I~R-P~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
.+.+||++.|.. |.++++.+|++++++|.+||++.|+.+||.|...+
T Consensus 22 ~i~~i~i~~I~~~~~npR~~~~~~~~~eLa~SI~~~G~l~PI~V~~~~ 69 (230)
T 1vz0_A 22 GVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQG 69 (230)
T ss_dssp -CEEEEGGGEECCCCCHHHHHHHHHHHHHHHHHHHHCCSSCEEEEEET
T ss_pred ceEEEEHHHcccCCCCCCccCCHHHHHHHHHHHHHcCceeCeEEEEeC
Confidence 578999999999 78766689999999999999999999999998753
No 4
>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP: d.268.1.2
Probab=96.72 E-value=0.0013 Score=50.42 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=33.3
Q ss_pred eEEecccccccCCCCCCCCCCHHHHHHHHHHHHhcCCC-CCeeeecC
Q 033779 41 VILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPVRTNHP 86 (112)
Q Consensus 41 vV~EVPL~~I~RP~~R~rvlDeeKVqELM~SIre~GLr-~PIDVleV 86 (112)
.+..+|++.|. ++..+|++|+++|++||++.|.. +||-|...
T Consensus 17 ~i~~i~~~~i~----p~e~~~~~~~~~l~~sI~~~G~~~~PIiV~~~ 59 (242)
T 1vk1_A 17 EYVFIELDKMX----PHEQLVQRELEDFIESVTGSGIFWKPMLLAKI 59 (242)
T ss_dssp CCEEEEGGGEE----CSBCCCHHHHHHHHHHHHHHCEECSCEEEEEC
T ss_pred eEEEEehhhcC----CCcCCCHHHHHHHHHHHHHhCCccCCEEEEec
Confidence 34555555554 34578999999999999999998 99999875
No 5
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=60.13 E-value=0.78 Score=33.84 Aligned_cols=51 Identities=18% Similarity=0.103 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeecCCCCCcccEEEeeehhhhhhhhccc
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRAVNLIILVEIFSLAKYCLPM 110 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVleV~p~~~~n~~~~~~~~~~~~~~~~~ 110 (112)
-+|..-++||.++.+.+|..-|..+-.++.=-+.+ .+--+.++|||.||+.
T Consensus 13 pl~~K~IkeLk~Av~~YGp~APyT~a~le~La~~~-LtP~DW~~lara~Ls~ 63 (140)
T 2v4x_A 13 SLPFKQLKELKIACSQYGPTAPFTIAMIENLGTQA-LPPNDWKQTARACLSG 63 (140)
T ss_dssp CCCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHTSC-CCHHHHHHHHHHHSCH
T ss_pred CCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHhCC-CChHHHHHHHHHHcCc
Confidence 58899999999999999999999887765544444 4567899999999973
No 6
>1p7n_A GAG polyprotein capsid protein P27; retrovirus, immature GAG, V protein; 2.60A {Rous sarcoma virus} SCOP: a.73.1.1
Probab=57.12 E-value=0.95 Score=34.55 Aligned_cols=71 Identities=14% Similarity=0.298 Sum_probs=50.4
Q ss_pred CCCCeEEecccccccCCCCCC-CCCCHHHHHHHHHHHHhcCCCCCeeeecCCCCCcccEEEeeehhhhhhhhccc
Q 033779 37 GSGPVILELPLDKIRRPLMRT-RANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRAVNLIILVEIFSLAKYCLPM 110 (112)
Q Consensus 37 ~~G~vV~EVPL~~I~RP~~R~-rvlDeeKVqELM~SIre~GLr~PIDVleV~p~~~~n~~~~~~~~~~~~~~~~~ 110 (112)
.+|+...-.| ++..+-.|. --+|..-++||.++.+.+|+.-|..+-.++-=-+ +-.+--+.++|+|.||++
T Consensus 21 ~~g~~~~aFP--Vf~~~egp~~~pl~~K~IkeLk~av~~yG~~aP~T~~~le~La~-~~LtP~Dw~~laravLs~ 92 (176)
T 1p7n_A 21 STGPPVVAMP--VVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITMAEVEALMS-SPLLPHDVTNLMRVILGP 92 (176)
T ss_dssp TSCSSSCSCS--CCCCCCCCCSCCCCHHHHHHHHHHHHTTCSSCHHHHHHHHHHTS-SCCCHHHHHHHHHHHHCH
T ss_pred hcCCccceee--eeecCCCccccCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHh-CCCChHHHHHHHHHHhCc
Confidence 4555554555 333332222 3799999999999999999999988877654333 344567889999999975
No 7
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=43.27 E-value=2.1 Score=31.45 Aligned_cols=51 Identities=20% Similarity=0.157 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeecCCCCCcccEEEeeehhhhhhhhccc
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRAVNLIILVEIFSLAKYCLPM 110 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVleV~p~~~~n~~~~~~~~~~~~~~~~~ 110 (112)
-+|..-++||.++.+.+|..-|..+-.++-=-+ +-.+--+.++|||.||..
T Consensus 18 pl~~K~iKeLk~Av~~YGp~APyT~~lle~la~-~~LtP~DW~~lara~Ls~ 68 (140)
T 2kgf_A 18 GFDFAVIKELKTAASQYGATAPYTLAIVESVAD-NWLTPTDWNTLVRAVLSG 68 (140)
T ss_dssp CCCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHT-SBCCHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHh-CCCChHHHHHHHHHHcCc
Confidence 578899999999999999999988766644333 345567899999999964
No 8
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=37.02 E-value=21 Score=21.37 Aligned_cols=10 Identities=40% Similarity=0.704 Sum_probs=8.3
Q ss_pred HHHHHHHHHh
Q 033779 65 VKELMDSIQQ 74 (112)
Q Consensus 65 VqELM~SIre 74 (112)
-+.||+||+.
T Consensus 17 reql~esir~ 26 (38)
T 3mn5_S 17 REQLMESIRK 26 (38)
T ss_pred HHHHHHHHHc
Confidence 3579999997
No 9
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=32.81 E-value=43 Score=21.87 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQV 79 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr~ 79 (112)
-|++.++++.++++.+-.++.|+..
T Consensus 113 sR~~~l~~e~~~~f~~~~~~~G~~~ 137 (151)
T 1e5p_A 113 GKGNALTPEENEILVQFAHEKKIPV 137 (151)
T ss_dssp ESSSCCCHHHHHHHHHHHHHTTCCG
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCH
Confidence 6888999999999999999999864
No 10
>3tir_A ROUS sarcoma virus capsid protein P27; viral capsid protein, viral protein; 4.10A {Rous sarcoma virus} PDB: 2x8q_A
Probab=32.75 E-value=4.5 Score=31.50 Aligned_cols=50 Identities=14% Similarity=0.267 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeecCCCCCcccEEEeeehhhhhhhhcc
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTNHPPPPRAVNLIILVEIFSLAKYCLP 109 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVleV~p~~~~n~~~~~~~~~~~~~~~~ 109 (112)
-||.+.+++|++.+++.|..-|..+.++.-= +..-..--++.+++++||.
T Consensus 13 pl~~k~lk~lkkav~~yG~~Sp~v~~ll~aL-a~~~lTP~Dw~~l~r~~L~ 62 (226)
T 3tir_A 13 PLEPKLITRLADTVRTKGLRSPITMAEVEAL-MSSPLLPHDVTNLMRVILG 62 (226)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-TSSCCCHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HcCCCCHHHHHHHHHHHcc
Confidence 6899999999999999999988887776421 1112234467788999875
No 11
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1
Probab=31.77 E-value=46 Score=21.76 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=22.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQV 79 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr~ 79 (112)
-|++.++++.++++.+-+++.|+..
T Consensus 118 sR~~~~~~~~~~~f~~~~~~~G~~~ 142 (159)
T 1ew3_A 118 AREPDVSPEIKEEFVKIVQKRGIVK 142 (159)
T ss_dssp ESSSSCCHHHHHHHHHHHHHTTCCG
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 6888999999999999999998753
No 12
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A*
Probab=30.94 E-value=48 Score=21.99 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=22.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++.++++.+-.++.|+.
T Consensus 122 sR~~~~~~~~~~~f~~~~~~~G~~ 145 (162)
T 3o22_A 122 SRTQTPRAELKEKFTAFCKAQGFT 145 (162)
T ss_dssp ESSSSCCHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCC
Confidence 688899999999999999999885
No 13
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens}
Probab=30.73 E-value=39 Score=21.84 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++.++++.+-+++.|+.
T Consensus 124 sR~~~~~~~~~~~~~~~~~~~G~~ 147 (161)
T 2xst_A 124 SRTQDVSPQALKSFQDFYPTLGLP 147 (161)
T ss_dssp ESSSSCCHHHHHHHHHHGGGGTCC
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCC
Confidence 788899999999999999999975
No 14
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=30.52 E-value=49 Score=21.65 Aligned_cols=25 Identities=4% Similarity=0.178 Sum_probs=22.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQV 79 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr~ 79 (112)
-|++.++++.++++.+-.++.|+..
T Consensus 119 sR~~~~~~e~~~~f~~~~~~~G~~~ 143 (157)
T 1dzk_A 119 GKGTDIEDQDLEKFKEVTRENGIPE 143 (157)
T ss_dssp ESSSCCCHHHHHHHHHHHHHTTCCG
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCH
Confidence 6778999999999999999999853
No 15
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=30.33 E-value=46 Score=21.91 Aligned_cols=25 Identities=4% Similarity=0.073 Sum_probs=22.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQV 79 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr~ 79 (112)
-|++.++++.++++.+-.++.|+..
T Consensus 118 sR~~~l~~e~~~~f~~~~~~~G~~~ 142 (156)
T 1bj7_A 118 AKGTSFTPEELEKYQQLNSERGVPN 142 (156)
T ss_dssp ESSSCCCHHHHHHHHHHHHHHTCCG
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCH
Confidence 6888999999999999999999863
No 16
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=29.13 E-value=53 Score=21.71 Aligned_cols=25 Identities=4% Similarity=0.210 Sum_probs=22.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQV 79 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr~ 79 (112)
-|++.++++.++++.+-.++.|+..
T Consensus 120 sR~~~~~~e~~~~f~~~~~~~G~~~ 144 (160)
T 2hlv_A 120 VKGLNVEDEDLEKFWKLTEDKGIDK 144 (160)
T ss_dssp ECSSSCCHHHHHHHHHHHHHTTCCG
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCCH
Confidence 6778999999999999999998853
No 17
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.66 E-value=39 Score=19.29 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=11.5
Q ss_pred CCCCCHHHHHHHHH
Q 033779 57 TRANDQNKVKELMD 70 (112)
Q Consensus 57 ~rvlDeeKVqELM~ 70 (112)
++..|+++|+.|++
T Consensus 5 ~~~~~~~~v~~L~~ 18 (47)
T 2ekk_A 5 SSGVNQQQLQQLMD 18 (47)
T ss_dssp CCSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 35789999999986
No 18
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A*
Probab=27.82 E-value=58 Score=21.28 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++.++++.+-+++.|+.
T Consensus 118 sR~~~l~~~~~~~~~~~~~~~G~~ 141 (164)
T 1epa_A 118 SRSLDDNGEALYNFRKITSDHGFS 141 (164)
T ss_dssp ESCSSCCHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCC
Confidence 677899999999999999998875
No 19
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A
Probab=27.37 E-value=65 Score=21.70 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
.|++.+|++.++++.+-+++.|+.
T Consensus 128 sR~~~~~~~~~~~~~~~~~~~G~~ 151 (174)
T 2hzq_A 128 ARNVALPPETVDSLKNILTSNNID 151 (174)
T ss_dssp ESSSCCCHHHHHHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCC
Confidence 778899999999999999999975
No 20
>3bx8_A Engineered human lipocalin 2; protein design, ligand binding protein, de novo protein, protein binding; HET: 1PE PE5; 2.00A {Homo sapiens} PDB: 3bx7_A* 3dtq_A 3dsz_A* 1l6m_A* 3tf6_A* 1x71_A* 1x89_A* 1x8u_A* 3fw4_A 3fw5_A 3k3l_A* 3pec_A* 3ped_A* 3tzs_A* 1ngl_A 1dfv_A* 1qqs_A*
Probab=27.28 E-value=58 Score=21.88 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++.++++.+-+++.|+.
T Consensus 139 sR~~~l~~~~~~~~~~~~~~~G~~ 162 (178)
T 3bx8_A 139 GRTKELASELKENFIRFSKSLGLP 162 (178)
T ss_dssp ESSSCCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCC
Confidence 677899999999999999999875
No 21
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=26.11 E-value=51 Score=21.20 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHHh
Q 033779 58 RANDQNKVKELMDSIQQ 74 (112)
Q Consensus 58 rvlDeeKVqELM~SIre 74 (112)
+.+|+|+++++++.+++
T Consensus 54 P~l~ee~~~~~vek~~~ 70 (77)
T 3zzp_A 54 PNLDQSQLQNEKEIIQR 70 (77)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57899999999998876
No 22
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=25.85 E-value=57 Score=22.80 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=32.2
Q ss_pred ccccC--CCCCCCCCCHHHHHHHHHHHHhcCCCCCeeeecCCCC
Q 033779 48 DKIRR--PLMRTRANDQNKVKELMDSIQQIGLQVPVRTNHPPPP 89 (112)
Q Consensus 48 ~~I~R--P~~R~rvlDeeKVqELM~SIre~GLr~PIDVleV~p~ 89 (112)
..|+| ++.+-..+|.++++...+.|+..|.-.-+++...+.+
T Consensus 132 ~~i~r~l~~~~G~~~n~~~l~~~~~~L~~lg~F~~V~i~~~~~~ 175 (189)
T 3q6b_A 132 AVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVP 175 (189)
T ss_dssp HHHHTTCCSCTTSBCCHHHHHHHHHHHHHHSCCSEEEEEEEEET
T ss_pred HHHHhhccCCCCCccCHHHHHHHHHHHHhCCCceeeEEEeccCC
Confidence 34555 5554559999999999999999998777777766544
No 23
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=25.81 E-value=61 Score=21.61 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=22.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++.++++.+-.++.|+.
T Consensus 115 sR~~~~~~e~~~~f~~~~~~~G~~ 138 (160)
T 3sao_A 115 SRSREVSPTAMAIFRKLARERNYT 138 (160)
T ss_dssp ESSSSCCHHHHHHHHHHHHTTTCC
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCC
Confidence 588899999999999999999985
No 24
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A
Probab=25.37 E-value=64 Score=22.50 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++.++++.+-+++.|+.
T Consensus 142 sR~p~l~~~~~~~~~~~~~~~G~d 165 (177)
T 1qwd_A 142 SRTPTISDEVKQEMLAVATREGFD 165 (177)
T ss_dssp ESSSSCCHHHHHHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCC
Confidence 688899999999999999999874
No 25
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A
Probab=25.10 E-value=64 Score=21.35 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++.++++.+-.++.|+.
T Consensus 130 sR~~~~~~e~~~~f~~~~~~~G~~ 153 (166)
T 2ra6_A 130 GRTPNLSNEIKKRFEEDFMNRGFR 153 (166)
T ss_dssp ESSSCCCHHHHHHHHHHHHTTTCC
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCC
Confidence 677899999999999999998875
No 26
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrroli carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A* 3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A 3t1d_A* 3by0_A*
Probab=24.77 E-value=68 Score=21.94 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++.++++.+-+++.|+.
T Consensus 159 sR~~~l~~e~~~~f~~~~~~~G~~ 182 (198)
T 3cbc_A 159 GRTKELTSELKENFIRFSKSLGLP 182 (198)
T ss_dssp ESSSCCCHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCC
Confidence 678899999999999999999875
No 27
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus norvegicus}
Probab=24.03 E-value=72 Score=21.77 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++.++++.+-+++.|+.
T Consensus 134 sR~~~~~~e~~~~f~~~~~~~G~~ 157 (184)
T 2l5p_A 134 GRDWKITHKTIDRFIALTKTQNLT 157 (184)
T ss_dssp ESSSCCCHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCC
Confidence 677899999999999999999985
No 28
>1exs_A Beta-lactoglobulin; lipocalin fold, lipid-binding protein; 2.39A {Sus scrofa} SCOP: b.60.1.1
Probab=23.71 E-value=59 Score=21.38 Aligned_cols=26 Identities=15% Similarity=0.288 Sum_probs=22.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQVP 80 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr~P 80 (112)
-|++.++++.++++.+-.++.|+..-
T Consensus 123 sR~~~~~~e~~~~f~~~~~~~G~~~~ 148 (160)
T 1exs_A 123 ARTLEVDDQIREKFEDALKTLSVPMR 148 (160)
T ss_dssp ESSSCCCHHHHHHHHHHHTTSSSCEE
T ss_pred ecCCCCCHHHHHHHHHHHHhcCCCcc
Confidence 67889999999999999999887543
No 29
>1gm6_A SAL, salivary lipocalin; odorant-binding protein; HET: NAG; 2.13A {Sus scrofa} SCOP: b.60.1.1
Probab=23.62 E-value=69 Score=21.66 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++.++++.+-+++.|+.
T Consensus 124 sR~~~l~~e~~~~f~~~~~~~G~~ 147 (175)
T 1gm6_A 124 GRKPDVEPKLKDKFVEICQQYGII 147 (175)
T ss_dssp ESSSCCCHHHHHHHHHHHHTTTCC
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCC
Confidence 678899999999999999999985
No 30
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A
Probab=23.17 E-value=74 Score=21.12 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++.++++.+-+++.|+.
T Consensus 140 sR~~~~~~~~~~~f~~~~~~~G~~ 163 (181)
T 2a2u_A 140 GRTKDLSSDIKEKFAKLCEAHGIT 163 (181)
T ss_dssp ESSSSCCHHHHHHHHHHHHTTTCC
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCC
Confidence 678899999999999999998875
No 31
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=22.92 E-value=55 Score=17.04 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHh
Q 033779 62 QNKVKELMDSIQQ 74 (112)
Q Consensus 62 eeKVqELM~SIre 74 (112)
.+++++++++|++
T Consensus 11 k~q~~~i~e~i~~ 23 (26)
T 1oef_A 11 QRQWAGLVEKVQA 23 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3678899999987
No 32
>3ebw_A PER A 4 allergen; beta barrel, cockroach; HET: PE4; 2.80A {Periplaneta americana}
Probab=22.75 E-value=76 Score=21.69 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=22.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 54 LMRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 54 ~~R~rvlDeeKVqELM~SIre~GLr 78 (112)
+-|++.++++.++.+.+-.++.|+.
T Consensus 124 lsR~~~l~~~~~~~~~~~~~~~G~~ 148 (163)
T 3ebw_A 124 ASHETSFDDATKAKVNEVLAPYNLS 148 (163)
T ss_dssp EESSSSCCHHHHHHHHHHHGGGTCC
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCC
Confidence 3788899999999999999999985
No 33
>1lf7_A Complement protein C8gamma; lipocalin, beta barrel, calyx, MAC, immune system; HET: CIT; 1.20A {Homo sapiens} SCOP: b.60.1.1 PDB: 1iw2_A* 2ovd_A* 2ove_A 2ova_A 2rd7_C 3ojy_C* 2qos_C
Probab=22.53 E-value=81 Score=21.46 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=22.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++.++++.+-+++.|+.
T Consensus 132 sR~p~l~~e~~~~f~~~~~~~G~~ 155 (182)
T 1lf7_A 132 ARSLPVSDSVLSGFEQRVQEAHLT 155 (182)
T ss_dssp ESSSSCCHHHHHHHHHHHHHTTCC
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCC
Confidence 788899999999999999999985
No 34
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=22.34 E-value=42 Score=21.86 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHHHHh
Q 033779 58 RANDQNKVKELMDSIQQ 74 (112)
Q Consensus 58 rvlDeeKVqELM~SIre 74 (112)
+.+|.+||++|-..|++
T Consensus 53 ~dir~~kV~~iK~aI~~ 69 (88)
T 1rp3_B 53 EKDLEKKVKELKEKIEK 69 (88)
T ss_dssp CSSHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHc
Confidence 47999999999999987
No 35
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Probab=22.19 E-value=64 Score=27.80 Aligned_cols=27 Identities=33% Similarity=0.319 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
-.++++|.++++..++.|+ |.|+.|++
T Consensus 186 y~~~~ev~~v~~~~~~~~I--P~dvi~lD 212 (693)
T 2g3m_A 186 YYPQDKVVELVDIMQKEGF--RVAGVFLD 212 (693)
T ss_dssp CCSHHHHHHHHHHHHHTTC--CEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHcCC--CcceEEEe
Confidence 3589999999999999766 89998874
No 36
>1beb_A Beta-lactoglobulin; lipocalin, MILK WHEY protein, bovine, retinol-binding; 1.80A {Bos taurus} SCOP: b.60.1.1 PDB: 3nq3_A* 1b0o_A 1bsq_A 1gx8_A* 1gx9_A* 1gxa_A* 2gj5_A* 2r56_A* 3npo_A 1b8e_A* 3nq9_A* 3qzj_A* 3qzk_A* 3ueu_A* 3uev_A* 3uew_A* 3uex_A* 4dq3_A* 4dq4_A* 1qg5_A ...
Probab=21.69 E-value=77 Score=20.78 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=21.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
-|++.++++.++++.+-.++.|+.
T Consensus 123 sR~~~~~~~~~~~f~~~~~~~g~~ 146 (162)
T 1beb_A 123 VRTPEVDDEALEKFDKALKALPMH 146 (162)
T ss_dssp ESSSSCCHHHHHHHHHHHTTSCCC
T ss_pred ecCCCCCHHHHHHHHHHHHHCCCC
Confidence 678899999999999999988865
No 37
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=21.55 E-value=98 Score=17.97 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=19.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGL 77 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GL 77 (112)
.-|+...-++|-++|+.+++.|+
T Consensus 51 ~aD~~~~y~~vv~vmd~l~~aG~ 73 (74)
T 2jwk_A 51 GGAKEVPYEEVIKALNLLHLAGI 73 (74)
T ss_dssp EECTTSCHHHHHHHHHHHHHTTC
T ss_pred EcCCCCCHHHHHHHHHHHHHcCC
Confidence 34567889999999999999886
No 38
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.13 E-value=87 Score=19.80 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=14.3
Q ss_pred ccCCCCC-CCCCCHHHHHHHHH
Q 033779 50 IRRPLMR-TRANDQNKVKELMD 70 (112)
Q Consensus 50 I~RP~~R-~rvlDeeKVqELM~ 70 (112)
|..|++. ....|+++|+.|++
T Consensus 17 ~d~pl~~~~~~~~~~~v~~L~~ 38 (73)
T 1wiv_A 17 IDAPISHQTSDIDQSSVDTLLS 38 (73)
T ss_dssp SSCCSCCSSCSSCHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHH
Confidence 4555522 23689999999985
No 39
>1gka_B Crustacyanin A2 subunit; lipocalin, lobster, astaxanthin, bathochromic, coloration; HET: AXT D12 EPE; 3.23A {Homarus gammarus} SCOP: b.60.1.1
Probab=20.95 E-value=60 Score=21.61 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQ 78 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr 78 (112)
.|++.++++.++++.+-+++.|+.
T Consensus 134 sR~~~~~~~~~~~~~~~~~~~G~~ 157 (174)
T 1gka_B 134 SRTPQTSGPAVEKTAAVFNKNGVE 157 (174)
T ss_dssp ESSCCSSSHHHHHHHHHHHHHTCC
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCC
Confidence 678899999999999999999875
No 40
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} SCOP: b.60.1.1 PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ...
Probab=20.79 E-value=93 Score=20.72 Aligned_cols=25 Identities=8% Similarity=0.116 Sum_probs=22.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQV 79 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr~ 79 (112)
-|++.++++.++.+.+-.++.|+..
T Consensus 121 ~R~~~~~~~~~~~f~~~~~~~G~~~ 145 (162)
T 3kff_A 121 GRKADLNSDIKEKFVKLCEEHGIIK 145 (162)
T ss_dssp ESSSCCCHHHHHHHHHHHHHTTCCG
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 5888999999999999999999853
No 41
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} SCOP: b.60.1.1 PDB: 2k23_A
Probab=20.74 E-value=90 Score=21.58 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQV 79 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr~ 79 (112)
-|++.++++.++++.+-.++.|+..
T Consensus 141 sR~~~l~~e~~~~f~~~~~~~G~~~ 165 (190)
T 3s26_A 141 GRTKELSPELKERFTRFAKSLGLKD 165 (190)
T ss_dssp ESSSCCCHHHHHHHHHHHHHTTCCG
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 6788999999999999999999863
No 42
>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A*
Probab=20.58 E-value=62 Score=27.86 Aligned_cols=27 Identities=4% Similarity=0.114 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCeeeecCC
Q 033779 59 ANDQNKVKELMDSIQQIGLQVPVRTNHPP 87 (112)
Q Consensus 59 vlDeeKVqELM~SIre~GLr~PIDVleV~ 87 (112)
-.|+++|.++++..++.| .|+||.|++
T Consensus 174 Y~~~~~v~~v~~~~~~~~--IP~dvi~lD 200 (666)
T 3nsx_A 174 YTTKEDFRAVAKGYRENH--IPIDMIYMD 200 (666)
T ss_dssp CCSHHHHHHHHHHHHHTT--CCCCEEEEC
T ss_pred cCCHHHHHHHHHHHHhcC--CCcceEEEe
Confidence 358999999999999966 599998874
No 43
>1kt6_A RBP, plasma retinol-binding protein; transport protein; HET: RTL; 1.10A {Bos taurus} SCOP: b.60.1.1 PDB: 1erb_A* 1fem_A* 1fen_A* 1hbp_A* 1fel_A* 1kt4_A* 1kt3_A* 1kt7_A* 1hbq_A 1aqb_A* 1kt5_A* 1rlb_E* 1rbp_A* 1brq_A 1brp_A* 1jyd_A 1jyj_A 2wqa_E* 3bsz_E* 1qab_E* ...
Probab=20.42 E-value=70 Score=21.50 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=21.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCC
Q 033779 55 MRTRANDQNKVKELMDSIQQIGLQV 79 (112)
Q Consensus 55 ~R~rvlDeeKVqELM~SIre~GLr~ 79 (112)
-|++.++++.++++.+-.++.|+..
T Consensus 138 sR~~~~~~~~~~~~~~~~~~~G~~~ 162 (183)
T 1kt6_A 138 ARDPSGFSPEVQKIVRQRQEELCLA 162 (183)
T ss_dssp ESSSSCCCHHHHHHHHHHHHHTTCT
T ss_pred EcCCCCCHHHHHHHHHHHHHcCCCH
Confidence 7888888999999999999999863
Done!