Query 033781
Match_columns 111
No_of_seqs 116 out of 857
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:13:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03151 TPT: Triose-phosphate 99.7 1.5E-18 3.3E-23 121.2 4.5 69 2-70 85-153 (153)
2 KOG1441 Glucose-6-phosphate/ph 99.7 1.3E-18 2.9E-23 138.3 3.8 75 3-77 240-314 (316)
3 KOG1442 GDP-fucose transporter 99.4 6.9E-15 1.5E-19 115.9 -1.2 81 1-81 258-338 (347)
4 KOG1444 Nucleotide-sugar trans 99.4 1.5E-13 3.1E-18 109.2 5.7 78 1-79 231-309 (314)
5 PTZ00343 triose or hexose phos 99.4 1.8E-13 4E-18 109.0 5.6 71 2-72 280-350 (350)
6 KOG1443 Predicted integral mem 99.4 1.1E-12 2.4E-17 104.4 5.6 67 2-68 247-313 (349)
7 TIGR00817 tpt Tpt phosphate/ph 99.2 2.5E-11 5.5E-16 93.8 5.0 69 7-75 230-298 (302)
8 PF08449 UAA: UAA transporter 99.1 1.5E-10 3.3E-15 90.1 6.2 74 2-75 229-302 (303)
9 COG5070 VRG4 Nucleotide-sugar 98.6 4.2E-08 9E-13 76.2 4.3 80 1-80 227-306 (309)
10 KOG1583 UDP-N-acetylglucosamin 98.6 8.4E-08 1.8E-12 76.0 5.6 73 1-73 245-317 (330)
11 KOG1580 UDP-galactose transpor 98.5 3E-07 6.6E-12 72.0 5.4 69 3-71 246-314 (337)
12 PLN00411 nodulin MtN21 family 98.0 2.7E-05 5.9E-10 62.9 7.6 62 14-75 272-333 (358)
13 KOG1581 UDP-galactose transpor 97.9 8.4E-06 1.8E-10 65.2 2.6 70 5-74 248-317 (327)
14 TIGR00803 nst UDP-galactose tr 97.6 1.1E-05 2.4E-10 60.0 -0.5 58 11-68 165-222 (222)
15 PF04142 Nuc_sug_transp: Nucle 97.4 0.00026 5.7E-09 54.4 5.0 70 2-71 21-90 (244)
16 PF00892 EamA: EamA-like trans 97.4 0.00033 7.2E-09 45.9 4.3 62 8-69 64-125 (126)
17 PF06027 DUF914: Eukaryotic pr 97.2 0.00034 7.4E-09 56.4 3.8 63 10-72 245-307 (334)
18 PRK11689 aromatic amino acid e 97.2 0.0012 2.7E-08 51.1 6.3 65 8-72 225-289 (295)
19 PRK10532 threonine and homoser 97.1 0.00088 1.9E-08 51.9 5.2 59 14-72 225-283 (293)
20 PF13536 EmrE: Multidrug resis 97.0 0.0031 6.6E-08 42.5 6.1 69 3-72 39-108 (113)
21 TIGR00688 rarD rarD protein. T 96.9 0.0023 4.9E-08 48.3 5.3 65 3-67 75-139 (256)
22 PRK15430 putative chlorampheni 96.8 0.0069 1.5E-07 46.9 7.3 67 7-73 222-288 (296)
23 TIGR00950 2A78 Carboxylate/Ami 96.7 0.0038 8.2E-08 46.6 5.6 67 3-69 52-118 (260)
24 PLN00411 nodulin MtN21 family 96.7 0.0033 7.1E-08 50.8 5.5 71 2-72 82-158 (358)
25 TIGR00950 2A78 Carboxylate/Ami 96.6 0.0046 9.9E-08 46.1 5.2 56 10-65 204-259 (260)
26 PRK15430 putative chlorampheni 96.6 0.0056 1.2E-07 47.5 5.7 67 3-69 78-144 (296)
27 TIGR00817 tpt Tpt phosphate/ph 96.5 0.0054 1.2E-07 47.4 5.0 65 3-67 70-134 (302)
28 TIGR03340 phn_DUF6 phosphonate 96.5 0.0075 1.6E-07 46.2 5.8 68 2-69 67-134 (281)
29 PRK11272 putative DMT superfam 96.3 0.014 3E-07 45.1 6.5 60 13-72 228-287 (292)
30 PRK11453 O-acetylserine/cystei 96.1 0.017 3.7E-07 44.8 6.0 56 17-72 234-289 (299)
31 PRK10452 multidrug efflux syst 96.1 0.02 4.4E-07 40.0 5.6 62 7-68 38-101 (120)
32 TIGR03340 phn_DUF6 phosphonate 96.0 0.014 3.1E-07 44.7 5.0 63 5-67 218-280 (281)
33 PRK09541 emrE multidrug efflux 95.9 0.041 8.8E-07 37.8 6.4 43 27-69 60-102 (110)
34 KOG1582 UDP-galactose transpor 95.8 0.013 2.8E-07 47.1 4.0 68 5-72 267-334 (367)
35 PRK15051 4-amino-4-deoxy-L-ara 95.7 0.036 7.8E-07 37.8 5.5 36 33-68 72-107 (111)
36 PTZ00343 triose or hexose phos 95.6 0.027 5.8E-07 45.1 5.2 66 3-68 119-184 (350)
37 PF08449 UAA: UAA transporter 95.6 0.021 4.6E-07 44.4 4.4 72 3-74 69-140 (303)
38 PRK02971 4-amino-4-deoxy-L-ara 95.4 0.043 9.3E-07 38.6 5.1 65 3-69 52-121 (129)
39 PRK10650 multidrug efflux syst 95.3 0.085 1.9E-06 36.2 6.2 44 25-68 63-106 (109)
40 COG2510 Predicted membrane pro 95.3 0.027 5.8E-07 40.4 3.8 66 2-67 71-136 (140)
41 PRK11431 multidrug efflux syst 95.2 0.019 4E-07 39.2 2.8 45 25-69 57-101 (105)
42 PF06027 DUF914: Eukaryotic pr 95.2 0.032 7E-07 45.0 4.6 69 4-72 85-153 (334)
43 KOG2234 Predicted UDP-galactos 95.0 0.048 1E-06 44.4 4.9 67 3-69 97-163 (345)
44 COG2076 EmrE Membrane transpor 94.9 0.026 5.6E-07 38.9 2.8 45 26-70 59-103 (106)
45 PRK11689 aromatic amino acid e 94.4 0.099 2.1E-06 40.4 5.3 65 5-69 68-136 (295)
46 TIGR00776 RhaT RhaT L-rhamnose 94.3 0.1 2.3E-06 40.6 5.3 68 3-70 216-288 (290)
47 COG0697 RhaT Permeases of the 94.2 0.12 2.6E-06 38.2 5.2 61 11-71 228-288 (292)
48 COG0697 RhaT Permeases of the 94.1 0.13 2.9E-06 37.9 5.4 67 4-70 76-143 (292)
49 PF06679 DUF1180: Protein of u 93.3 0.21 4.6E-06 36.8 5.0 64 46-111 89-154 (163)
50 KOG3912 Predicted integral mem 93.0 0.047 1E-06 44.1 1.3 61 11-71 275-335 (372)
51 PF07857 DUF1632: CEO family ( 92.8 0.088 1.9E-06 41.2 2.5 27 50-76 114-140 (254)
52 KOG2766 Predicted membrane pro 92.2 0.17 3.6E-06 40.5 3.4 61 6-68 232-297 (336)
53 PRK11453 O-acetylserine/cystei 92.2 0.4 8.6E-06 37.1 5.5 56 14-69 75-131 (299)
54 PF05961 Chordopox_A13L: Chord 91.8 0.23 4.9E-06 31.6 3.1 21 55-75 7-27 (68)
55 PRK11272 putative DMT superfam 91.3 0.62 1.3E-05 35.9 5.7 56 12-68 83-139 (292)
56 KOG2765 Predicted membrane pro 91.0 0.28 6E-06 40.8 3.6 69 3-71 164-232 (416)
57 PF00893 Multi_Drug_Res: Small 90.5 0.72 1.6E-05 30.2 4.7 56 5-60 35-92 (93)
58 COG2962 RarD Predicted permeas 87.8 1.3 2.8E-05 35.5 5.1 49 31-79 244-292 (293)
59 KOG4510 Permease of the drug/m 85.7 0.38 8.1E-06 38.8 1.0 67 3-69 102-168 (346)
60 KOG2234 Predicted UDP-galactos 85.5 1.4 2.9E-05 36.1 4.2 61 15-75 267-327 (345)
61 TIGR00776 RhaT RhaT L-rhamnose 85.4 1.4 3.1E-05 34.2 4.2 59 11-69 72-135 (290)
62 PHA03049 IMV membrane protein; 84.5 1.4 3E-05 28.0 3.1 21 55-75 7-27 (68)
63 PF08507 COPI_assoc: COPI asso 84.1 2.6 5.6E-05 29.4 4.7 35 33-68 69-103 (136)
64 KOG4812 Golgi-associated prote 84.0 3.1 6.8E-05 32.7 5.4 64 1-67 163-236 (262)
65 COG4736 CcoQ Cbb3-type cytochr 81.5 0.92 2E-05 28.2 1.3 18 58-75 18-35 (60)
66 PF15361 RIC3: Resistance to i 81.1 2.9 6.3E-05 30.3 4.0 29 54-82 80-110 (152)
67 PF01102 Glycophorin_A: Glycop 80.9 2.6 5.7E-05 29.6 3.6 48 56-107 71-118 (122)
68 KOG4782 Predicted membrane pro 77.7 1.3 2.9E-05 30.1 1.3 26 47-75 58-83 (108)
69 PF10639 UPF0546: Uncharacteri 76.4 2.1 4.5E-05 29.7 2.0 60 7-66 46-110 (113)
70 COG5006 rhtA Threonine/homoser 70.7 4.5 9.7E-05 32.3 2.9 57 15-71 227-283 (292)
71 KOG2765 Predicted membrane pro 69.3 4.7 0.0001 33.7 2.8 70 4-73 324-393 (416)
72 COG2962 RarD Predicted permeas 68.4 5.4 0.00012 32.0 2.9 38 32-69 106-143 (293)
73 PF14880 COX14: Cytochrome oxi 68.2 5.6 0.00012 24.2 2.4 30 49-78 15-44 (59)
74 PF14283 DUF4366: Domain of un 67.4 1.4 3.1E-05 33.7 -0.5 20 58-77 167-186 (218)
75 PF11346 DUF3149: Protein of u 66.4 13 0.00029 21.4 3.6 26 46-71 7-32 (42)
76 PF04657 DUF606: Protein of un 63.5 27 0.00059 24.4 5.5 65 2-66 68-137 (138)
77 PF10883 DUF2681: Protein of u 60.8 14 0.00031 24.5 3.4 25 55-79 7-31 (87)
78 PF05545 FixQ: Cbb3-type cytoc 60.7 5.7 0.00012 23.0 1.3 14 58-71 18-31 (49)
79 PF06800 Sugar_transport: Suga 56.3 42 0.0009 26.5 5.9 63 3-65 200-266 (269)
80 PF10855 DUF2648: Protein of u 55.5 15 0.00033 20.1 2.3 20 58-77 6-25 (33)
81 PRK10532 threonine and homoser 53.0 1E+02 0.0022 23.6 8.0 25 53-77 145-169 (293)
82 KOG3912 Predicted integral mem 52.9 19 0.00042 29.4 3.5 57 14-70 102-158 (372)
83 PF05653 Mg_trans_NIPA: Magnes 52.1 16 0.00035 28.9 3.0 55 16-70 68-122 (300)
84 PF04971 Lysis_S: Lysis protei 50.6 19 0.0004 23.0 2.5 32 48-79 26-63 (68)
85 KOG4510 Permease of the drug/m 49.7 16 0.00034 29.7 2.6 56 17-74 274-329 (346)
86 PF12868 DUF3824: Domain of un 48.8 27 0.00059 24.9 3.5 13 61-73 17-29 (137)
87 PF14851 FAM176: FAM176 family 46.4 29 0.00062 25.3 3.3 17 55-71 31-47 (153)
88 PF04142 Nuc_sug_transp: Nucle 46.0 17 0.00036 27.9 2.2 48 13-60 196-243 (244)
89 PF04277 OAD_gamma: Oxaloaceta 46.0 68 0.0015 19.8 4.7 11 55-65 9-19 (79)
90 PRK13499 rhamnose-proton sympo 42.9 77 0.0017 25.9 5.7 48 24-71 100-154 (345)
91 PF15050 SCIMP: SCIMP protein 39.5 32 0.00069 24.5 2.6 20 60-79 20-39 (133)
92 PF06800 Sugar_transport: Suga 39.3 1.4E+02 0.0031 23.5 6.5 42 26-67 74-119 (269)
93 PF06679 DUF1180: Protein of u 39.1 57 0.0012 24.0 4.0 10 33-42 94-103 (163)
94 PF15102 TMEM154: TMEM154 prot 38.1 18 0.00038 26.3 1.1 22 55-76 66-87 (146)
95 COG3296 Uncharacterized protei 37.6 45 0.00099 24.0 3.1 33 34-66 75-107 (143)
96 PRK10907 intramembrane serine 36.9 65 0.0014 25.4 4.3 66 5-73 147-215 (276)
97 PF12259 DUF3609: Protein of u 36.8 49 0.0011 27.1 3.6 23 54-76 305-327 (361)
98 PF09813 Coiled-coil_56: Coile 34.8 14 0.0003 25.2 0.2 21 55-75 55-75 (100)
99 KOG1581 UDP-galactose transpor 34.6 19 0.00042 29.3 1.0 67 8-74 93-159 (327)
100 COG0342 SecD Preprotein transl 33.9 71 0.0015 27.4 4.3 60 3-63 347-406 (506)
101 PRK10655 potE putrescine trans 32.8 2.2E+02 0.0048 22.9 6.9 25 55-79 411-435 (438)
102 PRK02935 hypothetical protein; 31.6 84 0.0018 21.8 3.6 42 36-78 24-68 (110)
103 PHA02902 putative IMV membrane 31.6 1.3E+02 0.0028 19.1 4.1 21 55-75 8-28 (70)
104 KOG3269 Predicted membrane pro 31.3 91 0.002 23.4 4.0 44 35-79 34-77 (180)
105 PF06120 Phage_HK97_TLTM: Tail 31.2 44 0.00095 26.9 2.5 22 55-77 25-46 (301)
106 PF07444 Ycf66_N: Ycf66 protei 31.0 66 0.0014 21.1 2.9 22 49-70 4-25 (84)
107 PF15471 TMEM171: Transmembran 30.7 38 0.00083 27.3 2.0 26 52-77 161-186 (319)
108 PF08693 SKG6: Transmembrane a 29.6 18 0.0004 20.6 0.1 20 55-74 20-39 (40)
109 PF05393 Hum_adeno_E3A: Human 29.6 1.2E+02 0.0026 20.3 4.0 20 50-69 35-54 (94)
110 COG3086 RseC Positive regulato 29.5 2.1E+02 0.0046 20.9 5.5 35 39-77 94-128 (150)
111 cd01324 cbb3_Oxidase_CcoQ Cyto 29.0 39 0.00085 19.7 1.4 18 58-75 19-36 (48)
112 PF03896 TRAP_alpha: Transloco 28.2 1.2E+02 0.0027 24.1 4.5 15 65-79 220-234 (285)
113 KOG1623 Multitransmembrane pro 28.0 99 0.0021 24.2 3.9 48 24-74 160-208 (243)
114 PF01034 Syndecan: Syndecan do 27.9 23 0.00051 22.2 0.3 20 79-98 39-58 (64)
115 PF04342 DUF486: Protein of un 27.9 47 0.001 23.0 1.8 26 39-64 77-102 (108)
116 COG3169 Uncharacterized protei 27.8 2.1E+02 0.0045 19.8 5.8 63 3-65 39-110 (116)
117 PF06365 CD34_antigen: CD34/Po 27.8 65 0.0014 24.5 2.8 23 54-76 106-130 (202)
118 PRK10644 arginine:agmatin anti 27.7 3.3E+02 0.0071 22.0 7.1 30 59-90 415-444 (445)
119 KOG1444 Nucleotide-sugar trans 26.0 75 0.0016 25.8 3.0 31 53-83 280-310 (314)
120 PF09716 ETRAMP: Malarial earl 25.9 71 0.0015 20.7 2.4 20 56-75 63-82 (84)
121 KOG2592 Tumor differentially e 25.2 1.3E+02 0.0028 25.5 4.2 22 50-72 296-317 (426)
122 KOG1441 Glucose-6-phosphate/ph 25.1 88 0.0019 25.2 3.2 31 51-81 285-315 (316)
123 cd08764 Cyt_b561_CG1275_like N 24.9 57 0.0012 24.9 2.0 30 52-81 175-204 (214)
124 PF02411 MerT: MerT mercuric t 24.6 1.3E+02 0.0027 20.8 3.5 16 56-74 55-70 (116)
125 PRK13953 mscL large-conductanc 24.5 1.6E+02 0.0036 20.7 4.1 24 24-47 26-49 (125)
126 TIGR00847 ccoS cytochrome oxid 24.3 1.7E+02 0.0036 17.4 4.0 15 57-71 9-23 (51)
127 PRK11387 S-methylmethionine tr 24.2 1.2E+02 0.0025 24.9 3.9 21 54-74 438-458 (471)
128 TIGR03226 PhnU 2-aminoethylpho 23.8 2.9E+02 0.0062 21.5 5.9 70 2-77 238-307 (312)
129 PLN03151 cation/calcium exchan 23.7 4.1E+02 0.0089 23.7 7.3 39 22-60 235-278 (650)
130 PF15069 FAM163: FAM163 family 23.0 1.7E+02 0.0037 21.1 4.1 21 58-78 17-37 (143)
131 PRK14860 tatA twin arginine tr 22.9 2E+02 0.0044 17.9 4.2 21 31-51 5-26 (64)
132 PRK11357 frlA putative fructos 22.9 1.9E+02 0.0042 23.3 4.9 20 56-75 419-438 (445)
133 TIGR00822 EII-Sor PTS system, 22.8 1.1E+02 0.0023 24.1 3.3 11 34-44 204-214 (265)
134 PF15061 DUF4538: Domain of un 22.5 94 0.002 19.1 2.3 17 55-71 10-26 (58)
135 PRK15049 L-asparagine permease 22.1 1.4E+02 0.0031 24.8 4.1 19 53-71 447-465 (499)
136 TIGR00837 araaP aromatic amino 21.9 4E+02 0.0086 20.9 7.1 31 38-69 319-350 (381)
137 PF15330 SIT: SHP2-interacting 21.7 2.7E+02 0.0058 18.9 5.0 20 55-74 6-25 (107)
138 PF10828 DUF2570: Protein of u 21.4 1.5E+02 0.0033 19.8 3.5 19 55-73 6-24 (110)
139 PRK07021 fliL flagellar basal 21.3 2E+02 0.0043 20.5 4.2 6 97-102 60-65 (162)
140 PF12768 Rax2: Cortical protei 21.2 1.8E+02 0.004 22.9 4.3 6 69-74 250-255 (281)
141 KOG2766 Predicted membrane pro 21.1 2.7 5.7E-05 33.8 -6.0 52 19-70 99-150 (336)
142 PF12301 CD99L2: CD99 antigen 21.1 1.9E+02 0.0042 21.3 4.1 8 55-62 117-124 (169)
143 PRK09400 secE preprotein trans 21.0 1.3E+02 0.0028 18.4 2.8 20 52-71 35-54 (61)
144 PRK13108 prolipoprotein diacyl 20.9 1.8E+02 0.0038 24.8 4.3 23 50-72 254-276 (460)
145 PF11431 Transport_MerF: Membr 20.8 1.4E+02 0.003 17.6 2.6 18 59-76 28-45 (46)
146 PF02439 Adeno_E3_CR2: Adenovi 20.7 1.5E+02 0.0033 16.7 2.7 17 55-71 13-29 (38)
147 PF01528 Herpes_glycop: Herpes 20.7 3.1E+02 0.0067 22.8 5.6 14 97-110 361-374 (374)
148 PF11166 DUF2951: Protein of u 20.4 1.4E+02 0.003 20.3 2.9 20 54-73 75-94 (98)
149 PF14576 SEO_N: Sieve element 20.3 86 0.0019 25.1 2.3 46 5-51 117-165 (286)
150 TIGR02736 cbb3_Q_epsi cytochro 20.3 1.2E+02 0.0026 18.6 2.4 6 102-107 43-48 (56)
151 KOG3415 Putative Rab5-interact 20.0 1.9E+02 0.0041 20.4 3.7 42 29-71 44-86 (129)
152 PHA02256 hypothetical protein 20.0 1.4E+02 0.003 20.4 2.9 30 45-75 76-105 (113)
No 1
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.74 E-value=1.5e-18 Score=121.24 Aligned_cols=69 Identities=33% Similarity=0.565 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHH
Q 033781 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 70 (111)
Q Consensus 2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~ 70 (111)
+++|+++|++|+++|+++++|||+|++|+|++|+++++++|+++|+|++|+.+++|++++++|+++|+|
T Consensus 85 ~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 85 ILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 579999999999999999999999999999999999999999999999999999999999999999975
No 2
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.73 E-value=1.3e-18 Score=138.28 Aligned_cols=75 Identities=28% Similarity=0.456 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQ 77 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~ 77 (111)
++.+++|++|++.|+++++|||||++|+|++|+++.+++|+++|++|+|+.|.+|++++++|+.+|++.|.++++
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 455999999999999999999999999999999999999999999999999999999999999999999887643
No 3
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=6.9e-15 Score=115.86 Aligned_cols=81 Identities=25% Similarity=0.269 Sum_probs=77.3
Q ss_pred ChhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhcC
Q 033781 1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGH 80 (111)
Q Consensus 1 l~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~~~ 80 (111)
|.++|+++|.+|+.+++.|+.||||||||.|+.|.+.+.++++.+.+|..+.++|.|.++.++|...|++.|..|+++++
T Consensus 258 mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~ 337 (347)
T KOG1442|consen 258 MTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS 337 (347)
T ss_pred HHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred C
Q 033781 81 A 81 (111)
Q Consensus 81 ~ 81 (111)
+
T Consensus 338 ~ 338 (347)
T KOG1442|consen 338 A 338 (347)
T ss_pred c
Confidence 4
No 4
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.5e-13 Score=109.20 Aligned_cols=78 Identities=27% Similarity=0.407 Sum_probs=71.9
Q ss_pred ChhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCC-ccchhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 033781 1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHD-EFTWLKGFGLFTILVGVSLFNWYKYQKLQAG 79 (111)
Q Consensus 1 l~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~-~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~~ 79 (111)
+.+||+++|.+|++.|+|...+|++|++++| +|+.+.+.+|.++|+| ++++.|.+|+.+.+.|.++|++.+.++++.+
T Consensus 231 ~~lScv~gf~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 231 MLLSCVMGFGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 4689999999999999999999999999999 9999999999999998 7999999999999999999999998764433
No 5
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.42 E-value=1.8e-13 Score=109.04 Aligned_cols=71 Identities=21% Similarity=0.395 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 72 (111)
Q Consensus 2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k 72 (111)
+.+|+.+|++|.+.|++++++||+|++|++++|+++++++|+++|||++|+.+++|.+++++|+.+|++.|
T Consensus 280 ~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 280 FFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999998764
No 6
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.35 E-value=1.1e-12 Score=104.37 Aligned_cols=67 Identities=39% Similarity=0.624 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF 68 (111)
Q Consensus 2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y 68 (111)
.++|.++|++-+++|++..+||.+|.+|+|++|++.++++|.++-+|.+|.+||+|+.+++.|+..|
T Consensus 247 ~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 247 SLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999999999999999999888
No 7
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.18 E-value=2.5e-11 Score=93.82 Aligned_cols=69 Identities=26% Similarity=0.407 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 033781 7 LAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 7 ~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
..++.|.+.|.+++++||.|.++.+.+|.++.+++|+++|||++|+.+++|.++++.|+.+|.+.|.+|
T Consensus 230 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~ 298 (302)
T TIGR00817 230 FFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQK 298 (302)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence 455677888999999999999999999999999999999999999999999999999999998766543
No 8
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.10 E-value=1.5e-10 Score=90.09 Aligned_cols=74 Identities=23% Similarity=0.317 Sum_probs=69.6
Q ss_pred hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 033781 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
++.++.+++.+.+.|.+++++||+|.++++++|+++++++|+++|++++++.+|+|+++++.|...|++.|++|
T Consensus 229 ~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 229 LLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 56788888889999999999999999999999999999999999999999999999999999999999888754
No 9
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.61 E-value=4.2e-08 Score=76.20 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=73.4
Q ss_pred ChhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhcC
Q 033781 1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGH 80 (111)
Q Consensus 1 l~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~~~ 80 (111)
+++||++++...+++=||+..||+.|++.+|.+.+...-+.|.++|++|.++..+..+.+.+...+.|++.|.+|.|.||
T Consensus 227 m~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q~ 306 (309)
T COG5070 227 MFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQK 306 (309)
T ss_pred HHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999988877655444
No 10
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.59 E-value=8.4e-08 Score=76.01 Aligned_cols=73 Identities=23% Similarity=0.405 Sum_probs=68.8
Q ss_pred ChhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHH
Q 033781 1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 73 (111)
Q Consensus 1 l~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~ 73 (111)
|+.+++..+++.=..|.+..+|++||.+++=++|+.+..++|+++|+||+|+..|+|..++++|.+.|+-...
T Consensus 245 Ll~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~ 317 (330)
T KOG1583|consen 245 LLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWN 317 (330)
T ss_pred HHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 4678899999999999999999999999999999999999999999999999999999999999999986654
No 11
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.46 E-value=3e-07 Score=71.99 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 71 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~ 71 (111)
+=++.+.+=..+.|+.+...+|||.+|+-+.++..+|++|+++|++|++.++|+|.++.+.|...-..+
T Consensus 246 l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~ 314 (337)
T KOG1580|consen 246 LLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVD 314 (337)
T ss_pred HHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence 345667777889999999999999999999999999999999999999999999999999998776555
No 12
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.99 E-value=2.7e-05 Score=62.86 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=55.2
Q ss_pred HHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 033781 14 TEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 14 s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
.-++++++.+|...++.-.+--++..++|++++||++++..++|.++.+.|+....+-+.+|
T Consensus 272 lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 272 IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34558999999999999999999999999999999999999999999999998877644443
No 13
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.87 E-value=8.4e-06 Score=65.21 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 033781 5 GALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 74 (111)
Q Consensus 5 g~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~ 74 (111)
++++-+=..+.|..|.+..|||+.+.-+.|+++.|.+|.++|++++++.+|+|+.+.+.|..+-.+.|.+
T Consensus 248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 3445555667899999999999999999999999999999999999999999999999999888887766
No 14
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.60 E-value=1.1e-05 Score=59.99 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=53.6
Q ss_pred HHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781 11 MVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF 68 (111)
Q Consensus 11 ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y 68 (111)
..++..+++++.++++.+++..++.++.+++|+++||+++|+..++|..+++.|+..|
T Consensus 165 ~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 165 GGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred cCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 3466889999999999999999999999999999999999999999999999987655
No 15
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.42 E-value=0.00026 Score=54.40 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHH
Q 033781 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 71 (111)
Q Consensus 2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~ 71 (111)
.+.+++..+.|...|..+....|.|+++....|-+.+-++++++++.+++..+|+++++.++|+....+.
T Consensus 21 ~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~ 90 (244)
T PF04142_consen 21 AVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLS 90 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecC
Confidence 4678999999999999999999999999999999999999999999999999999999999999765443
No 16
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.36 E-value=0.00033 Score=45.92 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781 8 AFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN 69 (111)
Q Consensus 8 af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~ 69 (111)
..+-+++-+..++++++-..++...+--+...++++++++|++++.+++|+++.++|+...+
T Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 64 TALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred eehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46667778888999999999999999999999999999999999999999999999997654
No 17
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.23 E-value=0.00034 Score=56.41 Aligned_cols=63 Identities=17% Similarity=0.463 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781 10 FMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 72 (111)
Q Consensus 10 ~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k 72 (111)
+.....-.++..+||+.+|+.=-.-+...+++++++||.+++++-++|.++.++|.+.|+...
T Consensus 245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 333344457899999999997777889999999999999999999999999999999997554
No 18
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.17 E-value=0.0012 Score=51.09 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781 8 AFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 72 (111)
Q Consensus 8 af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k 72 (111)
..+--+.-+..+++.+|.+.++...+-=++.+++|++++||++|+..++|.++.++|+....+.+
T Consensus 225 t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 225 MGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 33344555788999999999999999999999999999999999999999999999997776544
No 19
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.14 E-value=0.00088 Score=51.86 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=54.3
Q ss_pred HHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781 14 TEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 72 (111)
Q Consensus 14 s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k 72 (111)
.-+..+++.+|-+.++...+--+..+++|+++|||++++.+++|.++.+.|++.+.+..
T Consensus 225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 34678999999999999999999999999999999999999999999999999997553
No 20
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.99 E-value=0.0031 Score=42.45 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=53.4
Q ss_pred hhHHHHH-HHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781 3 SGGALAF-FMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 72 (111)
Q Consensus 3 ~sg~~af-~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k 72 (111)
+.|++.+ .-+...++.++..++ ...+.-.+--++..++|+++|+|+++..+++|+.++++|++.-.+-.
T Consensus 39 ~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 39 LAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 3455555 445555566666665 55577777888899999999999999999999999999998776543
No 21
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=96.88 E-value=0.0023 Score=48.28 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSL 67 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~ 67 (111)
+.|++.+..+.+-|..++.+++-+-++....=-+.+.++++++++|+++.++++|+++.++|+..
T Consensus 75 ~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~l 139 (256)
T TIGR00688 75 LCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVIS 139 (256)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46667777788888999999999999999999999999999999999999999999999999764
No 22
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.77 E-value=0.0069 Score=46.93 Aligned_cols=67 Identities=12% Similarity=0.041 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHH
Q 033781 7 LAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 73 (111)
Q Consensus 7 ~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~ 73 (111)
.+..-.++-+..+++.+|-+.++...+.-++.+++|++++||++++.+++|+++.+.|+......-.
T Consensus 222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~ 288 (296)
T PRK15430 222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI 288 (296)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455777889999999999999999999999999999999999999999999888877765533
No 23
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=96.75 E-value=0.0038 Score=46.56 Aligned_cols=67 Identities=13% Similarity=-0.015 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN 69 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~ 69 (111)
.+++...+.+.+.|..++++++-+-++.-...-+.+.++++++++|+++..+++|+.+.++|+....
T Consensus 52 ~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~ 118 (260)
T TIGR00950 52 LGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL 118 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence 3444456667788889999998888999999999999999999999999999999999999987764
No 24
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=96.74 E-value=0.0033 Score=50.85 Aligned_cols=71 Identities=17% Similarity=0.295 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhhee------cCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFY------FHDEFTWLKGFGLFTILVGVSLFNWYK 72 (111)
Q Consensus 2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~------F~~~~t~~~~~Gi~~~~~G~~~Y~~~k 72 (111)
++.|+++++.+...|.-++.|||-.-++....--+.+.++++++ ++|+++..+++|++++++|+..-..++
T Consensus 82 ~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~ 158 (358)
T PLN00411 82 GLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH 158 (358)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence 35677777777788999999999999999999999999999999 799999999999999999998766544
No 25
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=96.61 E-value=0.0046 Score=46.11 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHH
Q 033781 10 FMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGV 65 (111)
Q Consensus 10 ~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~ 65 (111)
.-...-+..+++.++-+.++...+.-+..+++++++++|++++..++|..+.+.|+
T Consensus 204 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 33445677899999999999999999999999999999999999999999999885
No 26
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.59 E-value=0.0056 Score=47.46 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN 69 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~ 69 (111)
++++..+..+.+-|+.++.+++-.-++....--+.+.++++++++|+++..+++|+++.++|+....
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 4455556678888999999999999999999999999999999999999999999999999987643
No 27
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=96.49 E-value=0.0054 Score=47.35 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSL 67 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~ 67 (111)
..|++..+.+...+..++.+|+-+.++.-..--+.+.++++++++|+++...++|+++.++|+..
T Consensus 70 ~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l 134 (302)
T TIGR00817 70 PVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVAL 134 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhh
Confidence 45666677788899999999999999999999999999999999999999999998888888753
No 28
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.48 E-value=0.0075 Score=46.24 Aligned_cols=68 Identities=10% Similarity=0.035 Sum_probs=57.0
Q ss_pred hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN 69 (111)
Q Consensus 2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~ 69 (111)
+++|+......++.+...+.+++-.-.+.....-+...++|+++|+|+++..+++|+++.+.|+..-.
T Consensus 67 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 67 AISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 34666667777777888888888777777788899999999999999999999999999999987543
No 29
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=96.34 E-value=0.014 Score=45.09 Aligned_cols=60 Identities=18% Similarity=0.108 Sum_probs=53.5
Q ss_pred HHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781 13 STEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 72 (111)
Q Consensus 13 ~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k 72 (111)
..-+..+++.++-+.++...+.-+...++|++++||++|+..++|.++.+.|+...++.+
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 455667889999999999999999999999999999999999999999999998776543
No 30
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=96.13 E-value=0.017 Score=44.75 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=48.8
Q ss_pred HHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781 17 VLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 72 (111)
Q Consensus 17 ~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k 72 (111)
..+++..|-+.++...+-=++.+++|++++||++++..++|.++.++|+..-.+-+
T Consensus 234 ~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 234 TLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 45678888888999999999999999999999999999999999999997655443
No 31
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.08 E-value=0.02 Score=39.97 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhcccce--ehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781 7 LAFFMVSTEFVLVSVTSAV--TVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF 68 (111)
Q Consensus 7 ~af~ln~s~f~~i~~tS~L--T~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y 68 (111)
..+.+.+..+...-+.=|+ .+.+-.-+-.+.+.++|+++|+|++|+.+++|+++.++|++.-
T Consensus 38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l 101 (120)
T PRK10452 38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI 101 (120)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 3344444433333333333 3455455677888999999999999999999999999999776
No 32
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=95.99 E-value=0.014 Score=44.67 Aligned_cols=63 Identities=10% Similarity=0.190 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHH
Q 033781 5 GALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSL 67 (111)
Q Consensus 5 g~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~ 67 (111)
++...+-...-+..+++..+-+.+....+--++.+++|+++|||+++...++|.++.++|+..
T Consensus 218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 344444445556778888887877777777899999999999999999999999999999864
No 33
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=95.89 E-value=0.041 Score=37.77 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=36.9
Q ss_pred hhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781 27 VQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN 69 (111)
Q Consensus 27 ~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~ 69 (111)
+.+-.-+-.+.+.++|+++|+|++++.+++|+.+.++|+.+-.
T Consensus 60 Yavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 60 YAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4444555778889999999999999999999999999998864
No 34
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.76 E-value=0.013 Score=47.08 Aligned_cols=68 Identities=18% Similarity=0.297 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781 5 GALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 72 (111)
Q Consensus 5 g~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k 72 (111)
++.+|+=..+..-+|+...+++...+-+.++.++|++|+++|..|+|....-|..+.+.|+.+=.+-|
T Consensus 267 s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 267 SLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 45566666777889999999999999999999999999999999999998888888889986655444
No 35
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=95.71 E-value=0.036 Score=37.77 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=32.5
Q ss_pred hhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781 33 VKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF 68 (111)
Q Consensus 33 ~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y 68 (111)
+--+.+.++|+++|||++|+.+++|+++.++|++.-
T Consensus 72 l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 72 LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 566788899999999999999999999999998764
No 36
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=95.57 E-value=0.027 Score=45.08 Aligned_cols=66 Identities=12% Similarity=0.258 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF 68 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y 68 (111)
.-|++++..++..+..++.+|+-..+++-..--+++.++++++++|+++...++|+++.++|+..-
T Consensus 119 p~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~ 184 (350)
T PTZ00343 119 PQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALA 184 (350)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhe
Confidence 456777777777778888888888888888888889999999999999999988888888887643
No 37
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=95.55 E-value=0.021 Score=44.42 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 74 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~ 74 (111)
.-+++-++-+.+....+...|.=|+.+.=..|-+.+.++|+++++.+.+..+++++++..+|++.+++.+..
T Consensus 69 ~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~ 140 (303)
T PF08449_consen 69 ILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSS 140 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccc
Confidence 446677777888889999999999999999999999999999999999999999999999999988866543
No 38
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=95.37 E-value=0.043 Score=38.55 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhhhhhhH---HHHhhhhh--eecCCccchhhhhHHHHHHHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKE---AVNILVAV--FYFHDEFTWLKGFGLFTILVGVSLFN 69 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~---v~~i~~s~--~~F~~~~t~~~~~Gi~~~~~G~~~Y~ 69 (111)
..|+..+.+.+......-+.-|++ ++.-+=. +...+.++ ++|||++|+.+++|+++.++|+..-+
T Consensus 52 ~lgl~~~~la~~~w~~aL~~~~ls--~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 52 LLGLAGYALSMLCWLKALRYLPLS--RAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 345555555555544444333433 2322222 23334444 48999999999999999999998764
No 39
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=95.29 E-value=0.085 Score=36.24 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=38.3
Q ss_pred eehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781 25 VTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF 68 (111)
Q Consensus 25 LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y 68 (111)
+.+.|-.-+-.+.+.++|+++|+|++|+.+++|+.+.++|+.+-
T Consensus 63 vAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 63 VAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 34566666777899999999999999999999999999999764
No 40
>COG2510 Predicted membrane protein [Function unknown]
Probab=95.28 E-value=0.027 Score=40.42 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHH
Q 033781 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSL 67 (111)
Q Consensus 2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~ 67 (111)
.+||+.+=+--++-|+.++.--+=-..=.-..--++.+++|+++++|.+|..+++|+.+..+|...
T Consensus 71 ilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail 136 (140)
T COG2510 71 ILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL 136 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence 467766666666666666542221111122334578899999999999999999999999999754
No 41
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.22 E-value=0.019 Score=39.23 Aligned_cols=45 Identities=7% Similarity=0.077 Sum_probs=39.5
Q ss_pred eehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781 25 VTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN 69 (111)
Q Consensus 25 LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~ 69 (111)
+.+.+-.-+-.+.+.++|+++|+|++++.+++|+.+.++|+..-.
T Consensus 57 vaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 57 TAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 456666777889999999999999999999999999999998753
No 42
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.22 E-value=0.032 Score=45.05 Aligned_cols=69 Identities=14% Similarity=0.249 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781 4 GGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 72 (111)
Q Consensus 4 sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k 72 (111)
-|++=+.-|+......++||-.+.++....--+.+.++|++++++++++.+++|+++++.|++.-.+.-
T Consensus 85 la~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 85 LALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 356777789999999999999999999999999999999999999999999999999999987765443
No 43
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=94.96 E-value=0.048 Score=44.43 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN 69 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~ 69 (111)
+.+++..+.|...|.....-+|.|++|..++|-.-+-++++++.+.+++.++|.-+++.++|+..--
T Consensus 97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 5677888999999999999999999999999999999999999999999999999999999996543
No 44
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=94.92 E-value=0.026 Score=38.86 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=39.0
Q ss_pred ehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHH
Q 033781 26 TVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 70 (111)
Q Consensus 26 T~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~ 70 (111)
.+.|-+=+=.+.+.++|+++|+|++++.+++|+.+.+.|+..-..
T Consensus 59 AYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 59 AYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 456666777889999999999999999999999999999987543
No 45
>PRK11689 aromatic amino acid exporter; Provisional
Probab=94.40 E-value=0.099 Score=40.44 Aligned_cols=65 Identities=23% Similarity=0.267 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhh----cccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781 5 GALAFFMVSTEFVLVS----VTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN 69 (111)
Q Consensus 5 g~~af~ln~s~f~~i~----~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~ 69 (111)
++..+..+.+.|.-++ .+++.+.++....--+.+.++++++++|+++..+++|+++.++|+..-.
T Consensus 68 ~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 68 GLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL 136 (295)
T ss_pred hHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence 3333334444444443 3455555666677778888999999999999999999999999886543
No 46
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=94.32 E-value=0.1 Score=40.57 Aligned_cols=68 Identities=9% Similarity=0.025 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHHHhh-cccceehhhhhhhhHHHHhhhhheecCCccchhhh----hHHHHHHHHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVS-VTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKG----FGLFTILVGVSLFNW 70 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~-~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~----~Gi~~~~~G~~~Y~~ 70 (111)
+.|++...-+.+-+.-.. ...+-+..+...+--++.++.|+++|||+.+++++ +|.++.+.|+..-..
T Consensus 216 ~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 216 LPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 366664333444446666 88899999999999999999999999999999999 999999999876543
No 47
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=94.23 E-value=0.12 Score=38.24 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHH
Q 033781 11 MVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 71 (111)
Q Consensus 11 ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~ 71 (111)
--+.-+..+++.++...+......-+..+++++++++|+++...++|.++.+.|+......
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 3445566788888888888888888899999999999999999999999999999777644
No 48
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=94.14 E-value=0.13 Score=37.94 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhh-eecCCccchhhhhHHHHHHHHHHHHHH
Q 033781 4 GGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAV-FYFHDEFTWLKGFGLFTILVGVSLFNW 70 (111)
Q Consensus 4 sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~-~~F~~~~t~~~~~Gi~~~~~G~~~Y~~ 70 (111)
.++.......+-|..++++++-+..+....--+.+.++++ ++++|+++...+.|+++.++|+..-..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~ 143 (292)
T COG0697 76 ALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILL 143 (292)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheec
Confidence 3444455556666668889999998999899999999996 666999999999999998998876654
No 49
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=93.31 E-value=0.21 Score=36.75 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=28.8
Q ss_pred cCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhcCC--CCCCCCCCccCcccccccccccccccCCCC
Q 033781 46 FHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGHA--NEDGMLGSRETNASAKYVILEEIDDLDEGT 111 (111)
Q Consensus 46 F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (111)
.+.+..-..+.-+++...-++.|..++..+.++.++ ...+....+.. +-...||+|.||+||.|
T Consensus 89 ~d~~~l~R~~~Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~~~--~~Em~pL~~ddedeD~T 154 (163)
T PF06679_consen 89 PDSPMLKRALYVLVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTRAE--NVEMAPLEEDDEDEDST 154 (163)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccceeecccCCCcc--cceecccCCCccccccc
Confidence 344443333333444444455565565554443222 22333333222 23455776656656654
No 50
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=93.04 E-value=0.047 Score=44.07 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=57.8
Q ss_pred HHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHH
Q 033781 11 MVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 71 (111)
Q Consensus 11 ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~ 71 (111)
.|++...+.++-|+-|-.+.-.+|..++-++++..+.|.+..++++|..+...|++.|.-.
T Consensus 275 fNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i 335 (372)
T KOG3912|consen 275 FNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI 335 (372)
T ss_pred eeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888899999999999999999999999999999999999999999999999999999754
No 51
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=92.76 E-value=0.088 Score=41.15 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=23.6
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHh
Q 033781 50 FTWLKGFGLFTILVGVSLFNWYKYQKL 76 (111)
Q Consensus 50 ~t~~~~~Gi~~~~~G~~~Y~~~k~~~~ 76 (111)
-.++|++|+++.++|...|.+.|....
T Consensus 114 ~~~Ln~~G~~l~~~~~~~f~fik~~~~ 140 (254)
T PF07857_consen 114 SPWLNYIGVALVLVSGIIFSFIKSEEK 140 (254)
T ss_pred hhHHHHHHHHHHHHHHHheeeecCCCC
Confidence 457899999999999999999887763
No 52
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=92.24 E-value=0.17 Score=40.54 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=46.4
Q ss_pred HHHHHHHHHHH-----HHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781 6 ALAFFMVSTEF-----VLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF 68 (111)
Q Consensus 6 ~~af~ln~s~f-----~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y 68 (111)
.++|.+.++-| .+++.+|+..+|+.=-.-+.-.+++ ..||-+++|+-.+..+..+.|.+.|
T Consensus 232 yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiY 297 (336)
T KOG2766|consen 232 YLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIY 297 (336)
T ss_pred HHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEe
Confidence 34454444433 4678899988888766666655555 7899999999999999999999988
No 53
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=92.18 E-value=0.4 Score=37.09 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=40.2
Q ss_pred HHHHHhhcc-cceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781 14 TEFVLVSVT-SAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN 69 (111)
Q Consensus 14 s~f~~i~~t-S~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~ 69 (111)
..|..++++ ++-.-++.-..--+.+.++++++++|+++.++++|+++.++|+..-.
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 334445554 33233444555567888999999999999999999999999976544
No 54
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=91.83 E-value=0.23 Score=31.64 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 033781 55 GFGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
.++++++++|.+.|..|+.++
T Consensus 7 Li~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 678999999999999998765
No 55
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=91.34 E-value=0.62 Score=35.89 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=40.2
Q ss_pred HHHHHHHh-hcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781 12 VSTEFVLV-SVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF 68 (111)
Q Consensus 12 n~s~f~~i-~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y 68 (111)
+.+.+... ..+++-..++.-..--+.+.+++.+ |+|+++.+.++|+++.++|+..-
T Consensus 83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll 139 (292)
T PRK11272 83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLL 139 (292)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHH
Confidence 33444444 5555544566666677777788875 89999999999999999998654
No 56
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=91.02 E-value=0.28 Score=40.78 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 71 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~ 71 (111)
.=|.+=|+.|+..=..+..||.-..+|....-...++.+|.++-+|.+|+.+.+++++.+.|++.-+..
T Consensus 164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~ 232 (416)
T KOG2765|consen 164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG 232 (416)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEec
Confidence 347788999999999999999999999999999999999999999999999999999999998765544
No 57
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=90.55 E-value=0.72 Score=30.25 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhccccee--hhhhhhhhHHHHhhhhheecCCccchhhhhHHHH
Q 033781 5 GALAFFMVSTEFVLVSVTSAVT--VQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60 (111)
Q Consensus 5 g~~af~ln~s~f~~i~~tS~LT--~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~ 60 (111)
++.++.+++.-+...-+.=|+. +.+-.-+-.+.+.++|+++|||++|+.+++|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 3445555555554444444433 3444555678899999999999999999999875
No 58
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=87.82 E-value=1.3 Score=35.48 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=41.3
Q ss_pred hhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 033781 31 AVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAG 79 (111)
Q Consensus 31 G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~~ 79 (111)
.-+--.++.++++++|||+++.-+....+..-+|++.|++-...+.+++
T Consensus 244 qYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~ 292 (293)
T COG2962 244 QYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARKK 292 (293)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445567889999999999999999999999999999999887665543
No 59
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=85.65 E-value=0.38 Score=38.75 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN 69 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~ 69 (111)
+=|+++|.--+-.|.....-|----.|.--.--++++++++++.+||+|..+.+|..+++.|+.+-.
T Consensus 102 LRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 102 LRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred eehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 3345554444444443333322222233334568999999999999999999999999999997653
No 60
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=85.52 E-value=1.4 Score=36.12 Aligned_cols=61 Identities=10% Similarity=0.218 Sum_probs=49.4
Q ss_pred HHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 033781 15 EFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 15 ~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
.-+++++..-+...-+-.+--+++.+.|+.+|+-++|..-.+|..+++..+..|..+.++.
T Consensus 267 vs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 267 VSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 3445666666666666777788888999999999999999999999999999999666554
No 61
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=85.39 E-value=1.4 Score=34.18 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=40.0
Q ss_pred HHHHHHHHhhcccceehh-hhhhhhHHHHhhhhheecCCccchhh----hhHHHHHHHHHHHHH
Q 033781 11 MVSTEFVLVSVTSAVTVQ-IAAVVKEAVNILVAVFYFHDEFTWLK----GFGLFTILVGVSLFN 69 (111)
Q Consensus 11 ln~s~f~~i~~tS~LT~s-V~G~~K~v~~i~~s~~~F~~~~t~~~----~~Gi~~~~~G~~~Y~ 69 (111)
-|++-|..++.++.=+-. +...+--+...+.|.++|||+.+.++ ++|+++.++|.....
T Consensus 72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 345566666654422221 11224444677899999999999988 999999999987763
No 62
>PHA03049 IMV membrane protein; Provisional
Probab=84.54 E-value=1.4 Score=28.00 Aligned_cols=21 Identities=10% Similarity=0.357 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 033781 55 GFGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
.++++++++|.+.|..|+.++
T Consensus 7 l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 578999999999999998754
No 63
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=84.11 E-value=2.6 Score=29.42 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=25.1
Q ss_pred hhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781 33 VKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF 68 (111)
Q Consensus 33 ~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y 68 (111)
-|.+..+++|.+.++. -....++|..+...|++.-
T Consensus 69 GRGlfyif~G~l~~~~-~~~~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 69 GRGLFYIFLGTLCLGQ-SILSIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHH
Confidence 4678888899999988 2234567787777786543
No 64
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=83.97 E-value=3.1 Score=32.68 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=38.1
Q ss_pred ChhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHH---HHhhhhhee---cCC----ccchhhhhHHHHHHHHHHH
Q 033781 1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEA---VNILVAVFY---FHD----EFTWLKGFGLFTILVGVSL 67 (111)
Q Consensus 1 l~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v---~~i~~s~~~---F~~----~~t~~~~~Gi~~~~~G~~~ 67 (111)
|+++-++||+.|+..|++... ||++++|.--.+ -+.++.|++ |.| .+....|++.+++++|.++
T Consensus 163 F~~af~vAflFnwIGFlltyc---l~tT~agRYGA~~GfGLsLikwilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 163 FMWAFIVAFLFNWIGFLLTYC---LTTTHAGRYGAISGFGLSLIKWILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhHhhhhhhhhccchhhheeeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 467889999999999998764 567777643322 223333332 233 2343456666666666554
No 65
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=81.47 E-value=0.92 Score=28.21 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033781 58 LFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 58 i~~~~~G~~~Y~~~k~~~ 75 (111)
+.++++|+++|.|-+.+|
T Consensus 18 ~~l~fiavi~~ayr~~~K 35 (60)
T COG4736 18 FTLFFIAVIYFAYRPGKK 35 (60)
T ss_pred HHHHHHHHHHHHhcccch
Confidence 556777777777655443
No 66
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=81.12 E-value=2.9 Score=30.26 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=20.2
Q ss_pred hhhHHH--HHHHHHHHHHHHHHHHhhhcCCC
Q 033781 54 KGFGLF--TILVGVSLFNWYKYQKLQAGHAN 82 (111)
Q Consensus 54 ~~~Gi~--~~~~G~~~Y~~~k~~~~~~~~~~ 82 (111)
+++|.+ +|.+|++.|..|+..|..+++..
T Consensus 80 g~~~~imPlYtiGI~~f~lY~l~Ki~~~k~~ 110 (152)
T PF15361_consen 80 GLMGQIMPLYTIGIVLFILYTLFKIKKKKDS 110 (152)
T ss_pred chhhhHhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 344433 58899999999988876655543
No 67
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=80.86 E-value=2.6 Score=29.59 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCccCccccccccccccccc
Q 033781 56 FGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDDL 107 (111)
Q Consensus 56 ~Gi~~~~~G~~~Y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (111)
+|+...++|+++..+|-.++++|++. .+..| ..+++ ..-+||+..+-+
T Consensus 71 ~gv~aGvIg~Illi~y~irR~~Kk~~-~~~~p--~P~~~-d~~~p~~~~~~~ 118 (122)
T PF01102_consen 71 FGVMAGVIGIILLISYCIRRLRKKSS-SDVQP--LPEED-DTDVPLSSVEIE 118 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC-CCCCC--CCCCC-CCCCCcceeeec
Confidence 34444444555544444444333322 22222 12221 345666655444
No 68
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=77.69 E-value=1.3 Score=30.08 Aligned_cols=26 Identities=8% Similarity=0.352 Sum_probs=20.8
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 033781 47 HDEFTWLKGFGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 47 ~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
.+.+| .+|+...++|+.||++|+.++
T Consensus 58 kN~is---~a~i~alViaIY~YTfYSikQ 83 (108)
T KOG4782|consen 58 KNHIS---FAGIGALVIAIYGYTFYSIKQ 83 (108)
T ss_pred hhhhh---hHHHHHHHHHhhhheeeehhH
Confidence 45677 777888889999999998754
No 69
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=76.41 E-value=2.1 Score=29.69 Aligned_cols=60 Identities=20% Similarity=0.302 Sum_probs=44.6
Q ss_pred HHHHHHHHH---HHHhhccccee--hhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHH
Q 033781 7 LAFFMVSTE---FVLVSVTSAVT--VQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVS 66 (111)
Q Consensus 7 ~af~ln~s~---f~~i~~tS~LT--~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~ 66 (111)
+.|++|.+. |...=...+++ .=+++.+--+.+.+.|+++.++..+...++|+.+.++|+.
T Consensus 46 ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~ 110 (113)
T PF10639_consen 46 IPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVA 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCee
Confidence 466777664 23323334444 4456788899999999999999889999999999999975
No 70
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=70.67 E-value=4.5 Score=32.29 Aligned_cols=57 Identities=11% Similarity=0.172 Sum_probs=48.9
Q ss_pred HHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHH
Q 033781 15 EFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 71 (111)
Q Consensus 15 ~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~ 71 (111)
+...+.+-++=|+.+.=.+.-.+--+.|+++.||.+|+.+|++++..+.++.+-++-
T Consensus 227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt 283 (292)
T COG5006 227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLT 283 (292)
T ss_pred HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccc
Confidence 455677777778888888888899999999999999999999999999999876653
No 71
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=69.28 E-value=4.7 Score=33.67 Aligned_cols=70 Identities=16% Similarity=0.047 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHH
Q 033781 4 GGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 73 (111)
Q Consensus 4 sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~ 73 (111)
+++.-++--+.=-+....||||+-++.=.+---+.++.=+++-+.++|+..++|-.-.++|.+.-++...
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 4444455556666677889999998887777777777777777889999999999999999877765544
No 72
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=68.36 E-value=5.4 Score=32.01 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=32.4
Q ss_pred hhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781 32 VVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN 69 (111)
Q Consensus 32 ~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~ 69 (111)
-+.-.+.+++|.++|+|+++..+++-++++.+|+..-.
T Consensus 106 ~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~ 143 (293)
T COG2962 106 FINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQT 143 (293)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 34557789999999999999999999999999986543
No 73
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=68.25 E-value=5.6 Score=24.18 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=23.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 033781 49 EFTWLKGFGLFTILVGVSLFNWYKYQKLQA 78 (111)
Q Consensus 49 ~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~ 78 (111)
..|...++|..++..|.+.|+.+.+.+..+
T Consensus 15 R~tV~~Lig~T~~~g~~~~~~~y~~~~~~r 44 (59)
T PF14880_consen 15 RTTVLGLIGFTVYGGGLTVYTVYSYFKYNR 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667889999999999999887765443
No 74
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=67.42 E-value=1.4 Score=33.72 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 033781 58 LFTILVGVSLFNWYKYQKLQ 77 (111)
Q Consensus 58 i~~~~~G~~~Y~~~k~~~~~ 77 (111)
++++++|...|.|+|..+.+
T Consensus 167 llv~l~gGGa~yYfK~~K~K 186 (218)
T PF14283_consen 167 LLVALIGGGAYYYFKFYKPK 186 (218)
T ss_pred HHHHHhhcceEEEEEEeccc
Confidence 33444555666666776543
No 75
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=66.41 E-value=13 Score=21.37 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=16.4
Q ss_pred cCCccchhhhhHHHHHHHHHHHHHHH
Q 033781 46 FHDEFTWLKGFGLFTILVGVSLFNWY 71 (111)
Q Consensus 46 F~~~~t~~~~~Gi~~~~~G~~~Y~~~ 71 (111)
|++++.+...+.++.+++=...|.++
T Consensus 7 F~s~vGL~Sl~vI~~~igm~~~~~~~ 32 (42)
T PF11346_consen 7 FGSDVGLMSLIVIVFTIGMGVFFIRY 32 (42)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777777776655444444444
No 76
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=63.52 E-value=27 Score=24.45 Aligned_cols=65 Identities=28% Similarity=0.435 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhh-hhe-ecC---CccchhhhhHHHHHHHHHH
Q 033781 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILV-AVF-YFH---DEFTWLKGFGLFTILVGVS 66 (111)
Q Consensus 2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~-s~~-~F~---~~~t~~~~~Gi~~~~~G~~ 66 (111)
.++|+++-..-.+....+.+-++.+..+....=+++.-++ -.+ +|+ .++++.+++|+.+.++|+.
T Consensus 68 ~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 68 YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4678888888888888888888777766665554433221 111 233 4699999999999999975
No 77
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=60.75 E-value=14 Score=24.50 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhc
Q 033781 55 GFGLFTILVGVSLFNWYKYQKLQAG 79 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~~~~~~~ 79 (111)
+.|++..++++++|.++|.++.+++
T Consensus 7 v~~~~~v~~~i~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888889999988765433
No 78
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=60.68 E-value=5.7 Score=23.03 Aligned_cols=14 Identities=14% Similarity=0.766 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 033781 58 LFTILVGVSLFNWY 71 (111)
Q Consensus 58 i~~~~~G~~~Y~~~ 71 (111)
+++.++|+++|.+-
T Consensus 18 ~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 18 FFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHc
Confidence 44566677776664
No 79
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=56.30 E-value=42 Score=26.55 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhh----hhHHHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLK----GFGLFTILVGV 65 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~----~~Gi~~~~~G~ 65 (111)
++|++-=.=|++-++-.+....-+-=..+++--++..+.|+++|||+-|.+. ++|+++.++|.
T Consensus 200 l~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~ 266 (269)
T PF06800_consen 200 LTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGA 266 (269)
T ss_pred HHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhh
Confidence 4555555567777777777666666677788889999999999999877664 44555555554
No 80
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=55.50 E-value=15 Score=20.11 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 033781 58 LFTILVGVSLFNWYKYQKLQ 77 (111)
Q Consensus 58 i~~~~~G~~~Y~~~k~~~~~ 77 (111)
+.+++.|..+|.+-||++.-
T Consensus 6 i~L~l~ga~f~~fKKyQ~~v 25 (33)
T PF10855_consen 6 IILILGGAAFYGFKKYQNHV 25 (33)
T ss_pred ehhhhhhHHHHHHHHHHHHH
Confidence 55788899999988998643
No 81
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=52.97 E-value=1e+02 Score=23.58 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh
Q 033781 53 LKGFGLFTILVGVSLFNWYKYQKLQ 77 (111)
Q Consensus 53 ~~~~Gi~~~~~G~~~Y~~~k~~~~~ 77 (111)
.+..|..+.+.+.+.|+.+...-++
T Consensus 145 ~~~~G~ll~l~aa~~~a~~~v~~r~ 169 (293)
T PRK10532 145 VDLTGAALALGAGACWAIYILSGQR 169 (293)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999988665433
No 82
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=52.93 E-value=19 Score=29.38 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=39.2
Q ss_pred HHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHH
Q 033781 14 TEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 70 (111)
Q Consensus 14 s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~ 70 (111)
.-|.-+..||+-.++..-=.--+.+-++|..+.+..++..+|+|+..+..|++...+
T Consensus 102 lm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 102 LMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 334445566666666543333444556677888999999999999999999865443
No 83
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=52.09 E-value=16 Score=28.89 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=41.7
Q ss_pred HHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHH
Q 033781 16 FVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 70 (111)
Q Consensus 16 f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~ 70 (111)
|.......+--.+=.|.+--+...+++.++.+|+++...++|+++++.|...-..
T Consensus 68 ~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 68 FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 3333333333344457777788899999999999999999999999999976653
No 84
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=50.58 E-value=19 Score=22.96 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=15.7
Q ss_pred Cccchhhhh--HHHH-HHHHHHHHH---HHHHHHhhhc
Q 033781 48 DEFTWLKGF--GLFT-ILVGVSLFN---WYKYQKLQAG 79 (111)
Q Consensus 48 ~~~t~~~~~--Gi~~-~~~G~~~Y~---~~k~~~~~~~ 79 (111)
|.+|+.+|. |++. .++|++.|- |+|.++.+++
T Consensus 26 d~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 26 DQFSPSQWAAIGVIGGIFFGLLTYLTNLYFKIKEDRRK 63 (68)
T ss_pred hccCcccchhHHHHHHHHHHHHHHHhHhhhhhhHhhhH
Confidence 455555444 5555 344555553 4455554433
No 85
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=49.75 E-value=16 Score=29.68 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=41.4
Q ss_pred HHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 033781 17 VLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 74 (111)
Q Consensus 17 ~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~ 74 (111)
+.+.+..|+ +++-...-+...+.=+++||+..|+..|.|.++.+....+-..-|..
T Consensus 274 lQiErAGpv--aim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa 329 (346)
T KOG4510|consen 274 LQIERAGPV--AIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWA 329 (346)
T ss_pred hhhhccCCe--ehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHh
Confidence 345555654 45555666777777889999999999999999888888777655554
No 86
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=48.75 E-value=27 Score=24.92 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 033781 61 ILVGVSLFNWYKY 73 (111)
Q Consensus 61 ~~~G~~~Y~~~k~ 73 (111)
+-+|.+...+.|+
T Consensus 17 AG~G~AA~~~~kr 29 (137)
T PF12868_consen 17 AGAGYAAHKYKKR 29 (137)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 87
>PF14851 FAM176: FAM176 family
Probab=46.42 E-value=29 Score=25.32 Aligned_cols=17 Identities=18% Similarity=-0.002 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 033781 55 GFGLFTILVGVSLFNWY 71 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~ 71 (111)
++|++++++.++.-.-.
T Consensus 31 C~GLlLtLcllV~risc 47 (153)
T PF14851_consen 31 CAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHhhhee
Confidence 56666666666554444
No 88
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=46.04 E-value=17 Score=27.85 Aligned_cols=48 Identities=10% Similarity=0.034 Sum_probs=40.8
Q ss_pred HHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHH
Q 033781 13 STEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60 (111)
Q Consensus 13 ~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~ 60 (111)
+..-+++++.+.+.-+.+..+--+++.++++++|+.++|..-.+|..+
T Consensus 196 llva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 196 LLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 344557899999999999999999999999999999999888777643
No 89
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=45.98 E-value=68 Score=19.82 Aligned_cols=11 Identities=9% Similarity=0.168 Sum_probs=5.2
Q ss_pred hhHHHHHHHHH
Q 033781 55 GFGLFTILVGV 65 (111)
Q Consensus 55 ~~Gi~~~~~G~ 65 (111)
++|+.++++.+
T Consensus 9 i~Gm~iVF~~L 19 (79)
T PF04277_consen 9 IIGMGIVFLVL 19 (79)
T ss_pred HHHHHHHHHHH
Confidence 44555544443
No 90
>PRK13499 rhamnose-proton symporter; Provisional
Probab=42.94 E-value=77 Score=25.88 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=31.3
Q ss_pred ceehhhhhhhhHHHHhhhhheecCCcc---c----hhhhhHHHHHHHHHHHHHHH
Q 033781 24 AVTVQIAAVVKEAVNILVAVFYFHDEF---T----WLKGFGLFTILVGVSLFNWY 71 (111)
Q Consensus 24 ~LT~sV~G~~K~v~~i~~s~~~F~~~~---t----~~~~~Gi~~~~~G~~~Y~~~ 71 (111)
++++.|.-=+--+...+++.++|||-- + ..-.+|++++++|++.-++.
T Consensus 100 S~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 100 SLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555556667778888888521 2 23567888888888776664
No 91
>PF15050 SCIMP: SCIMP protein
Probab=39.51 E-value=32 Score=24.45 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 033781 60 TILVGVSLFNWYKYQKLQAG 79 (111)
Q Consensus 60 ~~~~G~~~Y~~~k~~~~~~~ 79 (111)
...+|+++|+.++.+-+|-+
T Consensus 20 S~~lglIlyCvcR~~lRqGk 39 (133)
T PF15050_consen 20 SVVLGLILYCVCRWQLRQGK 39 (133)
T ss_pred HHHHHHHHHHHHHHHHHccc
Confidence 34568889988887654433
No 92
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=39.28 E-value=1.4e+02 Score=23.53 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=25.9
Q ss_pred ehhhhhhhhHHHHhhhhheecCCccchhh----hhHHHHHHHHHHH
Q 033781 26 TVQIAAVVKEAVNILVAVFYFHDEFTWLK----GFGLFTILVGVSL 67 (111)
Q Consensus 26 T~sV~G~~K~v~~i~~s~~~F~~~~t~~~----~~Gi~~~~~G~~~ 67 (111)
|+=+.--+-=+...++|+++|||.-+..+ .+++++.++|..+
T Consensus 74 tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~l 119 (269)
T PF06800_consen 74 TMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVIL 119 (269)
T ss_pred eeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 33333444556778899999999755433 3355566666643
No 93
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=39.08 E-value=57 Score=23.96 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=5.2
Q ss_pred hhHHHHhhhh
Q 033781 33 VKEAVNILVA 42 (111)
Q Consensus 33 ~K~v~~i~~s 42 (111)
+|+.+.+++|
T Consensus 94 l~R~~~Vl~g 103 (163)
T PF06679_consen 94 LKRALYVLVG 103 (163)
T ss_pred hhhhHHHHHH
Confidence 4555555444
No 94
>PF15102 TMEM154: TMEM154 protein family
Probab=38.08 E-value=18 Score=26.30 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 033781 55 GFGLFTILVGVSLFNWYKYQKL 76 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~~~~ 76 (111)
++++++.++.++++.++|+++.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 5556666777877777765543
No 95
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.59 E-value=45 Score=23.98 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=28.3
Q ss_pred hHHHHhhhhheecCCccchhhhhHHHHHHHHHH
Q 033781 34 KEAVNILVAVFYFHDEFTWLKGFGLFTILVGVS 66 (111)
Q Consensus 34 K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~ 66 (111)
=..++++.|+++-+...++.+.+|+++.++|++
T Consensus 75 vs~vLil~g~~la~t~~~~i~~ig~~l~li~il 107 (143)
T COG3296 75 VSFVLILAGVFLAATDISFIIIIGFFLTLIGIL 107 (143)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 345677888888888899999999999999988
No 96
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=36.89 E-value=65 Score=25.36 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhhee---cCCccchhhhhHHHHHHHHHHHHHHHHH
Q 033781 5 GALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFY---FHDEFTWLKGFGLFTILVGVSLFNWYKY 73 (111)
Q Consensus 5 g~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~---F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~ 73 (111)
++++.+.|+..++.++. .-....|..|-.++.+++.+. ..--++..+..|..+++.|.++|.+...
T Consensus 147 ~~~Hl~fNml~l~~lG~---~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~~~~gGaSGvVygL~g~~~~~~ 215 (276)
T PRK10907 147 SLLHILFNLLWWWYLGG---AVEKRLGSGKLIVITLISALLSGWVQSKFSGPWFGGLSGVVYALMGYVWLRG 215 (276)
T ss_pred CHHHHHHHHHHHHHHHH---HHHHHHChHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHh
Confidence 56788899998888863 234556766665555444332 1011223357799999999999987654
No 97
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=36.78 E-value=49 Score=27.14 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q 033781 54 KGFGLFTILVGVSLFNWYKYQKL 76 (111)
Q Consensus 54 ~~~Gi~~~~~G~~~Y~~~k~~~~ 76 (111)
-.+++++.+++++||..+.+++.
T Consensus 305 ~~~vli~vl~~~~~~~~~~~~~~ 327 (361)
T PF12259_consen 305 GAIVLIIVLISLAWLYRTFRRRQ 327 (361)
T ss_pred HHHHHHHHHHHHHhheeehHHHH
Confidence 46677777878887766655543
No 98
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=34.78 E-value=14 Score=25.22 Aligned_cols=21 Identities=24% Similarity=0.554 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 033781 55 GFGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
.+|++...+|+.+|+++..++
T Consensus 55 gl~L~~~v~gIY~YTi~sV~Q 75 (100)
T PF09813_consen 55 GLALGAFVVGIYAYTIYSVKQ 75 (100)
T ss_pred HHHHHHHHHHHHhheeeeech
Confidence 778888889999999887653
No 99
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=34.64 E-value=19 Score=29.31 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 033781 8 AFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 74 (111)
Q Consensus 8 af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~ 74 (111)
.-+-..+.|-.++..|=-|..++=..|-+.+++.|.++.+.+.++...+-.++...|+..+++.+..
T Consensus 93 n~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s 159 (327)
T KOG1581|consen 93 NTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNS 159 (327)
T ss_pred hhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCC
Confidence 3344456777889999999999999999999999999999999999999999999999887776543
No 100
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=33.87 E-value=71 Score=27.41 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILV 63 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~ 63 (111)
.+|++|+++-.....+-.+.--+--+++=.+ ++++++..+-+++-.+|+-.+.|+++++.
T Consensus 347 ~Agl~g~~~V~vfm~~~Yr~~Gvia~ial~~-n~~lil~vls~lgatLtLpgIAGiILtIG 406 (506)
T COG0342 347 IAGLIGLALVAVFMLLYYRLAGVIAAIALGL-NGVLILAVLSLLGATLTLPGIAGIILTIG 406 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHhcccccchhhhHHHHhhh
Confidence 5677777765554444444333333333333 66677777777788999888888777553
No 101
>PRK10655 potE putrescine transporter; Provisional
Probab=32.76 E-value=2.2e+02 Score=22.87 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhc
Q 033781 55 GFGLFTILVGVSLFNWYKYQKLQAG 79 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~~~~~~~ 79 (111)
..|..+.++|...|.+.+++..+|+
T Consensus 411 ~~~~~~~~~g~~~y~~~~~~~~~~~ 435 (438)
T PRK10655 411 LYGSIVTFLGWTLYGLISPRFELKN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 5578888999999987665544333
No 102
>PRK02935 hypothetical protein; Provisional
Probab=31.60 E-value=84 Score=21.75 Aligned_cols=42 Identities=12% Similarity=0.431 Sum_probs=29.9
Q ss_pred HHHhhhhheecCCc---cchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 033781 36 AVNILVAVFYFHDE---FTWLKGFGLFTILVGVSLFNWYKYQKLQA 78 (111)
Q Consensus 36 v~~i~~s~~~F~~~---~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~ 78 (111)
+++..+| ++|++. .+..-++|.+..+...+.|.|.-+...+.
T Consensus 24 ~~vMy~G-iff~~~~~~m~ifm~~G~l~~l~S~vvYFwiGmlStka 68 (110)
T PRK02935 24 FIVMYLG-IFFRESIIIMTIFMLLGFLAVIASTVVYFWIGMLSTKA 68 (110)
T ss_pred HHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4566677 455554 56667789999999999999987765443
No 103
>PHA02902 putative IMV membrane protein; Provisional
Probab=31.56 E-value=1.3e+02 Score=19.11 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 033781 55 GFGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
++-+.+.++..+.|+.||+.+
T Consensus 8 i~~v~v~Ivclliya~YrR~k 28 (70)
T PHA02902 8 ILAVIVIIFCLLIYAAYKRYK 28 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455667777888888887664
No 104
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=31.31 E-value=91 Score=23.42 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=30.3
Q ss_pred HHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 033781 35 EAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAG 79 (111)
Q Consensus 35 ~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~~ 79 (111)
.++-+++..++|...+|+.+|++.++..+.. +..|+....+.++
T Consensus 34 ~~~~~~v~~~f~~s~~T~~~wi~lv~s~l~~-g~~y~~m~~mAkp 77 (180)
T KOG3269|consen 34 NAVYFAVLRLFFYSSVTKTSWIGLVFSSLVY-GFAYYFMHSMAKP 77 (180)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-HHHHHHHHHhccC
Confidence 4566777888899999999999998876654 3344444444333
No 105
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=31.21 E-value=44 Score=26.91 Aligned_cols=22 Identities=14% Similarity=0.224 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 033781 55 GFGLFTILVGVSLFNWYKYQKLQ 77 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~~~~~ 77 (111)
+.|+++... .+||.||...+..
T Consensus 25 p~Gl~ml~A-gA~Y~~yQ~~EQA 46 (301)
T PF06120_consen 25 PPGLVMLGA-GAWYYFYQNAEQA 46 (301)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHH
Confidence 667776554 4778888776643
No 106
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=30.98 E-value=66 Score=21.14 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=18.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHH
Q 033781 49 EFTWLKGFGLFTILVGVSLFNW 70 (111)
Q Consensus 49 ~~t~~~~~Gi~~~~~G~~~Y~~ 70 (111)
.+++.+++|+.+.+.|...|..
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~l 25 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFL 25 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHH
Confidence 3677889999999999999964
No 107
>PF15471 TMEM171: Transmembrane protein family 171
Probab=30.73 E-value=38 Score=27.28 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhh
Q 033781 52 WLKGFGLFTILVGVSLFNWYKYQKLQ 77 (111)
Q Consensus 52 ~~~~~Gi~~~~~G~~~Y~~~k~~~~~ 77 (111)
.++++|=.++++|++++...-.+|++
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKKr~ 186 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKKRN 186 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeeecc
Confidence 46899999999999999877665533
No 108
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=29.61 E-value=18 Score=20.65 Aligned_cols=20 Identities=35% Similarity=0.851 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 033781 55 GFGLFTILVGVSLFNWYKYQ 74 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~~ 74 (111)
.+|.++..+|.++|-|||++
T Consensus 20 PV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 20 PVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred chHHHHHHHHHHhheEEecc
Confidence 45667777777777766643
No 109
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=29.60 E-value=1.2e+02 Score=20.34 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=11.0
Q ss_pred cchhhhhHHHHHHHHHHHHH
Q 033781 50 FTWLKGFGLFTILVGVSLFN 69 (111)
Q Consensus 50 ~t~~~~~Gi~~~~~G~~~Y~ 69 (111)
+++..+.|++++++=.++-.
T Consensus 35 m~~lvI~~iFil~VilwfvC 54 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFVC 54 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 55666666666555443333
No 110
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=29.54 E-value=2.1e+02 Score=20.87 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=19.4
Q ss_pred hhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 033781 39 ILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQ 77 (111)
Q Consensus 39 i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~ 77 (111)
++...+.|+|.+. ++|.++..+ ..++...+|.++-
T Consensus 94 ~La~~L~~~e~~~---~~~~~lg~~-l~fl~~r~ysRkl 128 (150)
T COG3086 94 ILAQYLFFSELIV---IFGAFLGLA-LGFLLARRYSRKL 128 (150)
T ss_pred HHHHHHhhhhHHH---HHHHHHHHH-HHHHHHHHHHHHh
Confidence 3467778888877 555555333 3334444555443
No 111
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=29.02 E-value=39 Score=19.72 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033781 58 LFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 58 i~~~~~G~~~Y~~~k~~~ 75 (111)
+++.++|+++|.+.+..+
T Consensus 19 ~~~~Figiv~wa~~p~~k 36 (48)
T cd01324 19 LALFFLGVVVWAFRPGRK 36 (48)
T ss_pred HHHHHHHHHHHHhCCCcc
Confidence 467899999999876543
No 112
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=28.24 E-value=1.2e+02 Score=24.10 Aligned_cols=15 Identities=13% Similarity=0.321 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhhhc
Q 033781 65 VSLFNWYKYQKLQAG 79 (111)
Q Consensus 65 ~~~Y~~~k~~~~~~~ 79 (111)
.++|..++....+++
T Consensus 220 l~l~~~~~~l~~~~k 234 (285)
T PF03896_consen 220 LGLYFVYQFLPSSKK 234 (285)
T ss_pred HHHHHHHHHHHhccc
Confidence 344454555443333
No 113
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=28.00 E-value=99 Score=24.17 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=33.1
Q ss_pred ceehhhhhhhhHHHHhhhhheecCCc-cchhhhhHHHHHHHHHHHHHHHHHH
Q 033781 24 AVTVQIAAVVKEAVNILVAVFYFHDE-FTWLKGFGLFTILVGVSLFNWYKYQ 74 (111)
Q Consensus 24 ~LT~sV~G~~K~v~~i~~s~~~F~~~-~t~~~~~Gi~~~~~G~~~Y~~~k~~ 74 (111)
|..+++++.+-...-.+-|.++ +|. +=.-|.+|..+.++=+++| ++|.
T Consensus 160 Pf~Ls~a~fl~a~~W~lYGlli-~D~~IaipN~iG~~l~~~QL~Ly--~~y~ 208 (243)
T KOG1623|consen 160 PFPLSFALFLVAVQWLLYGLLI-KDFFIAIPNVLGFLLGLIQLILY--FKYP 208 (243)
T ss_pred chHHHHHHHHHHHHHHHHHHHh-cCeEEEcccHHHHHHHHHHHHHh--hhcC
Confidence 4445666666666666667777 675 3356889999988888888 4443
No 114
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=27.95 E-value=23 Score=22.25 Aligned_cols=20 Identities=5% Similarity=-0.011 Sum_probs=1.6
Q ss_pred cCCCCCCCCCCccCcccccc
Q 033781 79 GHANEDGMLGSRETNASAKY 98 (111)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~ 98 (111)
+...+.+...++.++.++.+
T Consensus 39 kdEGSY~l~e~K~s~~~Y~k 58 (64)
T PF01034_consen 39 KDEGSYDLDEPKPSNYAYQK 58 (64)
T ss_dssp -----SS--S----------
T ss_pred cCCCCccCCCCCcccccccc
Confidence 33344555555555554444
No 115
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=27.88 E-value=47 Score=22.96 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=20.5
Q ss_pred hhhhheecCCccchhhhhHHHHHHHH
Q 033781 39 ILVAVFYFHDEFTWLKGFGLFTILVG 64 (111)
Q Consensus 39 i~~s~~~F~~~~t~~~~~Gi~~~~~G 64 (111)
..+++++++|++++....|.+..+.+
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~a 102 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGA 102 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 45788999999999998887665444
No 116
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.82 E-value=2.1e+02 Score=19.77 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHhhcccceehhhh--hhhh---HHHHh----hhhheecCCccchhhhhHHHHHHHHH
Q 033781 3 SGGALAFFMVSTEFVLVSVTSAVTVQIA--AVVK---EAVNI----LVAVFYFHDEFTWLKGFGLFTILVGV 65 (111)
Q Consensus 3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~--G~~K---~v~~i----~~s~~~F~~~~t~~~~~Gi~~~~~G~ 65 (111)
+..+....+-+.+|++---..-+-++|. +.+| ++++. .+|+++.++|+.+..+.|....+.|+
T Consensus 39 ~~i~~SWGIA~fEY~LqvPaNRiG~~v~s~~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav 110 (116)
T COG3169 39 IVILASWGIAFFEYLLQVPANRIGHQVYSAAQLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAV 110 (116)
T ss_pred HHHHHHhhHHHHHHHHhCccchhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 3445566677777777554444444442 3344 44443 46889999999998888765544444
No 117
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=27.79 E-value=65 Score=24.52 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=15.5
Q ss_pred hhhH--HHHHHHHHHHHHHHHHHHh
Q 033781 54 KGFG--LFTILVGVSLFNWYKYQKL 76 (111)
Q Consensus 54 ~~~G--i~~~~~G~~~Y~~~k~~~~ 76 (111)
-.+| +.+++++.++|...+++..
T Consensus 106 v~~g~~lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 106 VTSGSFLLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred HHhhHHHHHHHHHHHHHHhhhhccC
Confidence 3567 7777777777777666543
No 118
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=27.70 E-value=3.3e+02 Score=22.03 Aligned_cols=30 Identities=10% Similarity=0.008 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCc
Q 033781 59 FTILVGVSLFNWYKYQKLQAGHANEDGMLGSR 90 (111)
Q Consensus 59 ~~~~~G~~~Y~~~k~~~~~~~~~~~~~~~~~~ 90 (111)
.+.++|...|.+.+.+ |.++.++-|.|..|
T Consensus 415 ~~~~~~~~~y~~~~~~--~~~~~~~~~~~~~~ 444 (445)
T PRK10644 415 VTLMVITAFYALNYNR--LHKNPYPLDAPISK 444 (445)
T ss_pred HHHHHHHHHHHHHHHh--hcCCCCccCCCCCC
Confidence 3355566666444322 33444555555543
No 119
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.95 E-value=75 Score=25.81 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 033781 53 LKGFGLFTILVGVSLFNWYKYQKLQAGHANE 83 (111)
Q Consensus 53 ~~~~Gi~~~~~G~~~Y~~~k~~~~~~~~~~~ 83 (111)
.++.|+.+.++|.++-.+|.+.+.|+++++.
T Consensus 280 ~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~~ 310 (314)
T KOG1444|consen 280 FTFLNVIGLLVGFFGGVLYSYATFRKKKQPP 310 (314)
T ss_pred echhhhHHHHHHhhhhhHHhhhhhhhccCCC
Confidence 3677888999999999999999988888754
No 120
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=25.86 E-value=71 Score=20.67 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 033781 56 FGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 56 ~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
.|+++.+.+.++|.+|++++
T Consensus 63 s~lalli~~~~G~g~y~~~k 82 (84)
T PF09716_consen 63 SGLALLIATALGYGYYKKKK 82 (84)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 46666777788888887654
No 121
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=25.15 E-value=1.3e+02 Score=25.48 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=12.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHH
Q 033781 50 FTWLKGFGLFTILVGVSLFNWYK 72 (111)
Q Consensus 50 ~t~~~~~Gi~~~~~G~~~Y~~~k 72 (111)
...-+++|++..+.- +.|+-.+
T Consensus 296 ~~~~~iiGli~~~lc-ilYsalR 317 (426)
T KOG2592|consen 296 FDATNIIGLIFLLLC-ILYSALR 317 (426)
T ss_pred ccccchHHHHHHHHH-HHHHHhh
Confidence 445578888765544 4554443
No 122
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=25.14 E-value=88 Score=25.24 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=27.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 033781 51 TWLKGFGLFTILVGVSLFNWYKYQKLQAGHA 81 (111)
Q Consensus 51 t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~~~~ 81 (111)
++.++.+++++.+.+++-.+|.+.+.+++++
T Consensus 285 ~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 285 NPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3788999999999999999999998776654
No 123
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=24.93 E-value=57 Score=24.89 Aligned_cols=30 Identities=7% Similarity=-0.010 Sum_probs=19.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 033781 52 WLKGFGLFTILVGVSLFNWYKYQKLQAGHA 81 (111)
Q Consensus 52 ~~~~~Gi~~~~~G~~~Y~~~k~~~~~~~~~ 81 (111)
..|.+|+.+.+.|.+.-......+.|+++.
T Consensus 175 l~N~~gl~~~~fg~~V~~~~~~~~~kr~~~ 204 (214)
T cd08764 175 LGNFIGIVLVIFGGLVVYLVTEPDYKRIEL 204 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCCCC
Confidence 458889988888877665555555554444
No 124
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=24.61 E-value=1.3e+02 Score=20.82 Aligned_cols=16 Identities=13% Similarity=0.598 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 033781 56 FGLFTILVGVSLFNWYKYQ 74 (111)
Q Consensus 56 ~Gi~~~~~G~~~Y~~~k~~ 74 (111)
+++.+.++| |.|++..
T Consensus 55 i~~tl~~lg---~a~~~~y 70 (116)
T PF02411_consen 55 IALTLLFLG---YAFWRLY 70 (116)
T ss_pred HHHHHHHHH---HHHHHHH
Confidence 444444444 5555443
No 125
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=24.45 E-value=1.6e+02 Score=20.66 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=13.0
Q ss_pred ceehhhhhhhhHHHHhhhhheecC
Q 033781 24 AVTVQIAAVVKEAVNILVAVFYFH 47 (111)
Q Consensus 24 ~LT~sV~G~~K~v~~i~~s~~~F~ 47 (111)
+.|--|-+-+++++.=++|.+.-+
T Consensus 26 AF~~iV~slV~dii~PlI~~~~g~ 49 (125)
T PRK13953 26 AFGKIVSSLVNNIIMPLVGVLLGG 49 (125)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCC
Confidence 334444555666666666665444
No 126
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=24.28 E-value=1.7e+02 Score=17.44 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 033781 57 GLFTILVGVSLFNWY 71 (111)
Q Consensus 57 Gi~~~~~G~~~Y~~~ 71 (111)
++.+.+.+.+++.+.
T Consensus 9 piSl~l~~~~l~~f~ 23 (51)
T TIGR00847 9 PISLLLGGVGLVAFL 23 (51)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 127
>PRK11387 S-methylmethionine transporter; Provisional
Probab=24.23 E-value=1.2e+02 Score=24.95 Aligned_cols=21 Identities=5% Similarity=-0.069 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 033781 54 KGFGLFTILVGVSLFNWYKYQ 74 (111)
Q Consensus 54 ~~~Gi~~~~~G~~~Y~~~k~~ 74 (111)
.++|+.+.+++...|.++++.
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T PRK11387 438 LWCGIPFVALCYGAYYLTQRL 458 (471)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 357788888888877776543
No 128
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Probab=23.77 E-value=2.9e+02 Score=21.49 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 033781 2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQ 77 (111)
Q Consensus 2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~ 77 (111)
+.+.++.|...+.+|......+. +..+..-..+......+.....-..+++++.++..+.+..+++-++|
T Consensus 238 ~~~~~l~f~~~~~~f~~~~~lg~------~~~~tl~~~i~~~~~~~~~~~~aaa~avil~v~~~i~~~~~~~~~~r 307 (312)
T TIGR03226 238 AAGGILCFLLTLNEFGILLFIGA------AGLITLPMAIYSKAILDIDLPAAAAGALIMIALSLALFALYRLAARR 307 (312)
T ss_pred HHHHHHHHHHHHHhhhhHhhhcC------CCceeHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567778777877755442221 01111111112222223345555566777777777777777765544
No 129
>PLN03151 cation/calcium exchanger; Provisional
Probab=23.69 E-value=4.1e+02 Score=23.66 Aligned_cols=39 Identities=10% Similarity=0.179 Sum_probs=22.9
Q ss_pred ccceehhhhhhhhHHHHhhhh-----heecCCccchhhhhHHHH
Q 033781 22 TSAVTVQIAAVVKEAVNILVA-----VFYFHDEFTWLKGFGLFT 60 (111)
Q Consensus 22 tS~LT~sV~G~~K~v~~i~~s-----~~~F~~~~t~~~~~Gi~~ 60 (111)
..|+..+-....|++.-.+++ ++.+...++....+++++
T Consensus 235 ~~pf~v~~~~f~RD~~F~lla~~~l~~~l~~g~v~~~eai~ll~ 278 (650)
T PLN03151 235 DKEVQIDKRCFIRDLCFFLFTLVSLLVILMVGKVTVGGAIAFVS 278 (650)
T ss_pred CCceeecchhHHHhHHHHHHHHHHHHHHHHcCeEhHHHHHHHHH
Confidence 346666666778887654444 334456677655555443
No 130
>PF15069 FAM163: FAM163 family
Probab=22.96 E-value=1.7e+02 Score=21.14 Aligned_cols=21 Identities=10% Similarity=0.235 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 033781 58 LFTILVGVSLFNWYKYQKLQA 78 (111)
Q Consensus 58 i~~~~~G~~~Y~~~k~~~~~~ 78 (111)
++++++.++.|...+|.=-||
T Consensus 17 ILLcIIaVLCYCRLQYYCCKK 37 (143)
T PF15069_consen 17 ILLCIIAVLCYCRLQYYCCKK 37 (143)
T ss_pred HHHHHHHHHHHHhhHHHHhhc
Confidence 578899999999988853333
No 131
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=22.89 E-value=2e+02 Score=17.86 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=14.4
Q ss_pred hhhhHHHHhhhhheecC-Cccc
Q 033781 31 AVVKEAVNILVAVFYFH-DEFT 51 (111)
Q Consensus 31 G~~K~v~~i~~s~~~F~-~~~t 51 (111)
|-..-+++.++..++|| +.+.
T Consensus 5 G~~ElliI~vIalllfGp~kLP 26 (64)
T PRK14860 5 GMPELIVILVIALVVFGPAKLP 26 (64)
T ss_pred cHHHHHHHHHHHHhhcCchHHH
Confidence 44455677788899999 4444
No 132
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=22.86 E-value=1.9e+02 Score=23.31 Aligned_cols=20 Identities=10% Similarity=0.409 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 033781 56 FGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 56 ~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
.++.+.++|...|.++++++
T Consensus 419 ~~~~~~~~g~~~y~~~~~~~ 438 (445)
T PRK11357 419 CAVIVIATGLPAYAFWAKRS 438 (445)
T ss_pred HHHHHHHHhhhHHhheechh
Confidence 57888889999998776654
No 133
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=22.84 E-value=1.1e+02 Score=24.15 Aligned_cols=11 Identities=0% Similarity=-0.152 Sum_probs=4.3
Q ss_pred hHHHHhhhhhe
Q 033781 34 KEAVNILVAVF 44 (111)
Q Consensus 34 K~v~~i~~s~~ 44 (111)
|.+.-.++|++
T Consensus 204 ~~~~ff~lGF~ 214 (265)
T TIGR00822 204 YLMPFFYLGFL 214 (265)
T ss_pred chHHHHHHHHH
Confidence 33333344443
No 134
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=22.46 E-value=94 Score=19.15 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 033781 55 GFGLFTILVGVSLFNWY 71 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~ 71 (111)
++|-++.++|.++|..+
T Consensus 10 ~~ggfVg~iG~a~Ypi~ 26 (58)
T PF15061_consen 10 FVGGFVGLIGAALYPIY 26 (58)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 56677778888888765
No 135
>PRK15049 L-asparagine permease; Provisional
Probab=22.10 E-value=1.4e+02 Score=24.83 Aligned_cols=19 Identities=11% Similarity=-0.129 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 033781 53 LKGFGLFTILVGVSLFNWY 71 (111)
Q Consensus 53 ~~~~Gi~~~~~G~~~Y~~~ 71 (111)
.|+.+++....+++...+|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~ 465 (499)
T PRK15049 447 GTYTIAALPIIGILLVIGW 465 (499)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444
No 136
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=21.86 E-value=4e+02 Score=20.89 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=16.9
Q ss_pred HhhhhheecCC-ccchhhhhHHHHHHHHHHHHH
Q 033781 38 NILVAVFYFHD-EFTWLKGFGLFTILVGVSLFN 69 (111)
Q Consensus 38 ~i~~s~~~F~~-~~t~~~~~Gi~~~~~G~~~Y~ 69 (111)
-++++ .++.+ .++-+...|+.+++.+...=.
T Consensus 319 pl~~a-~~~p~~~~~~l~~~G~~~~~~~~~~p~ 350 (381)
T TIGR00837 319 PLVFA-LFYPEGFLYAIGYAGLAATIWAVIIPA 350 (381)
T ss_pred HHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 33433 457667777776666655333
No 137
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=21.66 E-value=2.7e+02 Score=18.88 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 033781 55 GFGLFTILVGVSLFNWYKYQ 74 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~~ 74 (111)
++++++.+.-++--..+++.
T Consensus 6 il~llLll~l~asl~~wr~~ 25 (107)
T PF15330_consen 6 ILALLLLLSLAASLLAWRMK 25 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55665444433333333333
No 138
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=21.39 E-value=1.5e+02 Score=19.78 Aligned_cols=19 Identities=21% Similarity=0.565 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 033781 55 GFGLFTILVGVSLFNWYKY 73 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~ 73 (111)
.+++++.++|++++.|+..
T Consensus 6 ~~~l~~lvl~L~~~l~~qs 24 (110)
T PF10828_consen 6 YIALAVLVLGLGGWLWYQS 24 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566777777777644
No 139
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.29 E-value=2e+02 Score=20.47 Aligned_cols=6 Identities=33% Similarity=0.473 Sum_probs=3.3
Q ss_pred cccccc
Q 033781 97 KYVILE 102 (111)
Q Consensus 97 ~~~~~~ 102 (111)
.|++++
T Consensus 60 ~~~~L~ 65 (162)
T PRK07021 60 VFFPLE 65 (162)
T ss_pred eEEecC
Confidence 466654
No 140
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=21.18 E-value=1.8e+02 Score=22.87 Aligned_cols=6 Identities=0% Similarity=-0.385 Sum_probs=2.2
Q ss_pred HHHHHH
Q 033781 69 NWYKYQ 74 (111)
Q Consensus 69 ~~~k~~ 74 (111)
.+.+.+
T Consensus 250 i~~~~~ 255 (281)
T PF12768_consen 250 ILAYIR 255 (281)
T ss_pred HHHHHH
Confidence 333333
No 141
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=21.14 E-value=2.7 Score=33.82 Aligned_cols=52 Identities=15% Similarity=0.312 Sum_probs=40.4
Q ss_pred hhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHH
Q 033781 19 VSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 70 (111)
Q Consensus 19 i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~ 70 (111)
-++||-.+-+..-.--..++.+++|++.+.+--+.++.|+++|++|+....+
T Consensus 99 yQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~ 150 (336)
T KOG2766|consen 99 YQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVF 150 (336)
T ss_pred hhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEE
Confidence 4566666666667777788888899999988888889999998888865543
No 142
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=21.14 E-value=1.9e+02 Score=21.28 Aligned_cols=8 Identities=13% Similarity=0.218 Sum_probs=3.2
Q ss_pred hhHHHHHH
Q 033781 55 GFGLFTIL 62 (111)
Q Consensus 55 ~~Gi~~~~ 62 (111)
+.||+-++
T Consensus 117 IaGIvsav 124 (169)
T PF12301_consen 117 IAGIVSAV 124 (169)
T ss_pred hhhHHHHH
Confidence 34444333
No 143
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=21.01 E-value=1.3e+02 Score=18.43 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 033781 52 WLKGFGLFTILVGVSLFNWY 71 (111)
Q Consensus 52 ~~~~~Gi~~~~~G~~~Y~~~ 71 (111)
.....|+.+.++|.++|...
T Consensus 35 ia~~~~iG~~i~G~iGf~Ik 54 (61)
T PRK09400 35 VAKVTGLGILLIGLIGFIIY 54 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999765
No 144
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=20.87 E-value=1.8e+02 Score=24.81 Aligned_cols=23 Identities=9% Similarity=-0.100 Sum_probs=17.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHH
Q 033781 50 FTWLKGFGLFTILVGVSLFNWYK 72 (111)
Q Consensus 50 ~t~~~~~Gi~~~~~G~~~Y~~~k 72 (111)
++..+++.+.+.++|++++.+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 67788999999999987664443
No 145
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=20.79 E-value=1.4e+02 Score=17.60 Aligned_cols=18 Identities=6% Similarity=0.643 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 033781 59 FTILVGVSLFNWYKYQKL 76 (111)
Q Consensus 59 ~~~~~G~~~Y~~~k~~~~ 76 (111)
...++|...|...+++++
T Consensus 28 La~fi~lt~yal~r~~~~ 45 (46)
T PF11431_consen 28 LAVFIGLTIYALWRRRRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 446788999988887653
No 146
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=20.70 E-value=1.5e+02 Score=16.70 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q 033781 55 GFGLFTILVGVSLFNWY 71 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~ 71 (111)
.+|+++..+-+..|...
T Consensus 13 ~vg~~iiii~~~~YaCc 29 (38)
T PF02439_consen 13 VVGMAIIIICMFYYACC 29 (38)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666777666644
No 147
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=20.66 E-value=3.1e+02 Score=22.79 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=7.7
Q ss_pred cccccccccccCCC
Q 033781 97 KYVILEEIDDLDEG 110 (111)
Q Consensus 97 ~~~~~~~~~~~~~~ 110 (111)
+.-+-+|.||+||+
T Consensus 361 ~~~~~~~~~~~~~~ 374 (374)
T PF01528_consen 361 RQARRSDIDDEEES 374 (374)
T ss_pred cCCccccccccccC
Confidence 44455566666653
No 148
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=20.36 E-value=1.4e+02 Score=20.27 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 033781 54 KGFGLFTILVGVSLFNWYKY 73 (111)
Q Consensus 54 ~~~Gi~~~~~G~~~Y~~~k~ 73 (111)
+++|++++++|++.-++.+.
T Consensus 75 wilGlvgTi~gsliia~lr~ 94 (98)
T PF11166_consen 75 WILGLVGTIFGSLIIALLRT 94 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57899999999988877653
No 149
>PF14576 SEO_N: Sieve element occlusion N-terminus
Probab=20.33 E-value=86 Score=25.11 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhhcccc---eehhhhhhhhHHHHhhhhheecCCccc
Q 033781 5 GALAFFMVSTEFVLVSVTSA---VTVQIAAVVKEAVNILVAVFYFHDEFT 51 (111)
Q Consensus 5 g~~af~ln~s~f~~i~~tS~---LT~sV~G~~K~v~~i~~s~~~F~~~~t 51 (111)
.+.||.+||.+||++.+..| |.-++ ..+|++..|+==...++.++-
T Consensus 117 tLAAFAl~YGeFwlLaq~~~~n~LakSl-A~LkqlP~i~~~~~~lk~r~~ 165 (286)
T PF14576_consen 117 TLAAFALEYGEFWLLAQIYPTNPLAKSL-AILKQLPDILEHSDSLKPRFD 165 (286)
T ss_pred HHHHHHHHhhhHHHHhhhcccCHHHHHH-HHHhcchhhhhhhhcccchhH
Confidence 57899999999999988743 33333 356777655543345555444
No 150
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=20.29 E-value=1.2e+02 Score=18.58 Aligned_cols=6 Identities=33% Similarity=0.861 Sum_probs=3.2
Q ss_pred cccccc
Q 033781 102 EEIDDL 107 (111)
Q Consensus 102 ~~~~~~ 107 (111)
||+||+
T Consensus 43 D~ldd~ 48 (56)
T TIGR02736 43 DDLDDS 48 (56)
T ss_pred ccccch
Confidence 555554
No 151
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.01 E-value=1.9e+02 Score=20.40 Aligned_cols=42 Identities=12% Similarity=0.315 Sum_probs=24.5
Q ss_pred hhhhhhHHHHhhhhheecCCccc-hhhhhHHHHHHHHHHHHHHH
Q 033781 29 IAAVVKEAVNILVAVFYFHDEFT-WLKGFGLFTILVGVSLFNWY 71 (111)
Q Consensus 29 V~G~~K~v~~i~~s~~~F~~~~t-~~~~~Gi~~~~~G~~~Y~~~ 71 (111)
|.==.|+++-+++|+++---|+. ++.+++.++.-.|++ |-|+
T Consensus 44 ViyW~rQVi~l~lGviwGi~pL~G~l~iv~f~~issgIv-y~y~ 86 (129)
T KOG3415|consen 44 VIYWIRQVIGLILGVIWGIIPLVGFLGIVLFLGISSGIV-YLYY 86 (129)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhhhhHH-HHHH
Confidence 33446889999999887655654 344444444444443 4444
No 152
>PHA02256 hypothetical protein
Probab=20.00 E-value=1.4e+02 Score=20.43 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=20.8
Q ss_pred ecCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 033781 45 YFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 45 ~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
=|+|| ++.-++...++++|..||-..|+.+
T Consensus 76 gfndp-~~ifiis~igai~g~~~y~~~k~ik 105 (113)
T PHA02256 76 GFNDP-IIIFIISFIGAILGGIWYKMMKIIK 105 (113)
T ss_pred CCCCC-EEEEeHHHHHHHHHhHHHHHHHHHH
Confidence 35555 3344566777889999998888765
Done!