Query 033781
Match_columns 111
No_of_seqs 116 out of 857
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 10:07:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 97.5 0.00019 6.5E-09 50.0 6.0 66 5-70 36-103 (137)
2 3b5d_A Multidrug transporter E 96.8 0.0043 1.5E-07 41.1 6.4 66 5-70 36-103 (110)
3 3l1l_A Arginine/agmatine antip 59.8 24 0.00082 26.7 6.3 21 55-75 411-431 (445)
4 2l2t_A Receptor tyrosine-prote 39.4 19 0.00064 20.1 2.0 6 69-74 32-37 (44)
5 2jwa_A Receptor tyrosine-prote 34.2 48 0.0016 18.4 3.2 12 64-75 28-39 (44)
6 3vmt_A Monofunctional glycosyl 25.9 79 0.0027 23.9 4.1 12 95-106 73-84 (263)
7 2rdd_B UPF0092 membrane protei 25.2 56 0.0019 17.0 2.4 21 59-79 9-29 (37)
8 2h3o_A MERF; membrane protein, 19.7 81 0.0028 18.7 2.5 14 61-74 42-55 (61)
9 1rh5_B Preprotein translocase 19.1 97 0.0033 18.9 2.8 22 52-73 37-58 (74)
10 1afo_A Glycophorin A; integral 18.8 1.3E+02 0.0044 16.4 3.5 34 46-79 7-40 (40)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.52 E-value=0.00019 Score=50.00 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhcccceeh--hhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHH
Q 033781 5 GALAFFMVSTEFVLVSVTSAVTV--QIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 70 (111)
Q Consensus 5 g~~af~ln~s~f~~i~~tS~LT~--sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~ 70 (111)
|++++.+.+..+...-+.-|++. .+...+--+++.++|+++|+|++|+.+++|+++.++|+.+...
T Consensus 36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444444444443 2326778899999999999999999999999999999988764
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.75 E-value=0.0043 Score=41.13 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhcccceehh--hhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHH
Q 033781 5 GALAFFMVSTEFVLVSVTSAVTVQ--IAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 70 (111)
Q Consensus 5 g~~af~ln~s~f~~i~~tS~LT~s--V~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~ 70 (111)
+++++.+.+.-+...-+.-|+... +...+--+.+.++|+++|||++|+.+++|+++.+.|+.....
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444445555543 334667888899999999999999999999999999987754
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=59.80 E-value=24 Score=26.72 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 033781 55 GFGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
..|+....+|...|.+.++++
T Consensus 411 ~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 411 MWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 567888899999998776543
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=39.45 E-value=19 Score=20.14 Aligned_cols=6 Identities=0% Similarity=0.179 Sum_probs=2.3
Q ss_pred HHHHHH
Q 033781 69 NWYKYQ 74 (111)
Q Consensus 69 ~~~k~~ 74 (111)
.|.+.+
T Consensus 32 ~~~RRR 37 (44)
T 2l2t_A 32 VYVRRK 37 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 333433
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=34.21 E-value=48 Score=18.43 Aligned_cols=12 Identities=25% Similarity=0.169 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 033781 64 GVSLFNWYKYQK 75 (111)
Q Consensus 64 G~~~Y~~~k~~~ 75 (111)
|..+..|.|.++
T Consensus 28 ~l~~~~~~RRR~ 39 (44)
T 2jwa_A 28 GVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHhheehhh
Confidence 344444445443
No 6
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=25.87 E-value=79 Score=23.87 Aligned_cols=12 Identities=8% Similarity=0.415 Sum_probs=9.3
Q ss_pred cccccccccccc
Q 033781 95 SAKYVILEEIDD 106 (111)
Q Consensus 95 ~~~~~~~~~~~~ 106 (111)
.+.|+|++|+++
T Consensus 73 ~r~~v~l~~Ip~ 84 (263)
T 3vmt_A 73 KSSFVSADNMPE 84 (263)
T ss_dssp STTCCCGGGSCH
T ss_pred cCCCCCHHHcCH
Confidence 357899988875
No 7
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=25.20 E-value=56 Score=17.03 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 033781 59 FTILVGVSLFNWYKYQKLQAG 79 (111)
Q Consensus 59 ~~~~~G~~~Y~~~k~~~~~~~ 79 (111)
.+.++++.++-..+.++++.+
T Consensus 9 ~v~~~~ifYFl~iRPQ~Kr~K 29 (37)
T 2rdd_B 9 LVVFGLIFYFMILRPQQKRTK 29 (37)
T ss_dssp HHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHH
Confidence 334445544444555554433
No 8
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=19.65 E-value=81 Score=18.75 Aligned_cols=14 Identities=14% Similarity=0.600 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHH
Q 033781 61 ILVGVSLFNWYKYQ 74 (111)
Q Consensus 61 ~~~G~~~Y~~~k~~ 74 (111)
+++|..+|..+|.+
T Consensus 42 ~figl~~Y~~~r~~ 55 (61)
T 2h3o_A 42 IFIGLTIYAIQRKR 55 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 55688888877755
No 9
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=19.06 E-value=97 Score=18.92 Aligned_cols=22 Identities=18% Similarity=-0.094 Sum_probs=16.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 033781 52 WLKGFGLFTILVGVSLFNWYKY 73 (111)
Q Consensus 52 ~~~~~Gi~~~~~G~~~Y~~~k~ 73 (111)
.....|+.+.++|.++|...=.
T Consensus 37 iak~~~iG~~imG~IGfiIkli 58 (74)
T 1rh5_B 37 VAKVTALGISLLGIIGYIIHVP 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888999999886643
No 10
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=18.84 E-value=1.3e+02 Score=16.36 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=0.0
Q ss_pred cCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 033781 46 FHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAG 79 (111)
Q Consensus 46 F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~~ 79 (111)
|.+|.-..-++|+.-..+|+.+...|..++..|+
T Consensus 7 fs~p~i~lII~~vmaGiIG~IllI~y~I~rl~Kk 40 (40)
T 1afo_A 7 FSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK 40 (40)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Done!