Query 033781
Match_columns 111
No_of_seqs 116 out of 857
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 10:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033781.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033781hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 54.3 6.4 0.00046 18.4 2.7 19 55-73 2-20 (27)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 28.1 3.1 0.00022 24.8 -1.4 20 58-77 28-47 (91)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 25.5 30 0.0022 20.2 3.1 21 55-75 36-56 (100)
4 d1n1ea1 a.100.1.6 (A:198-357) 20.5 16 0.0012 23.3 1.1 21 25-45 4-24 (160)
5 d1iwga8 f.35.1.1 (A:513-566,A: 19.7 1.1E+02 0.008 19.9 5.5 38 38-75 97-134 (222)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 19.1 41 0.003 19.9 2.8 21 55-75 42-62 (107)
7 d1txga1 a.100.1.6 (A:181-335) 18.4 21 0.0015 22.7 1.3 20 26-45 4-23 (155)
8 d1rh5b_ f.23.28.1 (B:) Preprot 14.8 70 0.0051 17.2 2.8 19 54-72 28-46 (56)
9 d1r3jc_ f.14.1.1 (C:) Potassiu 13.4 1.2E+02 0.0086 17.2 5.3 36 36-71 47-85 (103)
10 d1iwga7 f.35.1.1 (A:7-37,A:331 12.1 1.7E+02 0.013 18.4 6.7 45 27-71 68-112 (199)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=54.33 E-value=6.4 Score=18.43 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 033781 55 GFGLFTILVGVSLFNWYKY 73 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~ 73 (111)
.+|++.+..|..+|+-|+.
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 4678777778777776654
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=28.06 E-value=3.1 Score=24.80 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 033781 58 LFTILVGVSLFNWYKYQKLQ 77 (111)
Q Consensus 58 i~~~~~G~~~Y~~~k~~~~~ 77 (111)
+++...|...|...||++++
T Consensus 28 v~v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 28 VVIPAILMAVGFAWKYRASN 47 (91)
T ss_dssp TTTHHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHHHhhheeeeccC
Confidence 44566788888888887543
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=25.52 E-value=30 Score=20.21 Aligned_cols=21 Identities=5% Similarity=0.202 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 033781 55 GFGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
...+++...|...|..+|+++
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~ 56 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHE 56 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHHHHHHhhhhhc
Confidence 345666677888888888775
No 4
>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Probab=20.51 E-value=16 Score=23.31 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=17.1
Q ss_pred eehhhhhhhhHHHHhhhhhee
Q 033781 25 VTVQIAAVVKEAVNILVAVFY 45 (111)
Q Consensus 25 LT~sV~G~~K~v~~i~~s~~~ 45 (111)
...-++|.+|+++.|..|++-
T Consensus 4 ~GvE~~galKNi~Aia~Gi~~ 24 (160)
T d1n1ea1 4 VGCEVASAVKNVLAIGSGVAN 24 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999888764
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=19.75 E-value=1.1e+02 Score=19.85 Aligned_cols=38 Identities=13% Similarity=-0.087 Sum_probs=26.7
Q ss_pred HhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 033781 38 NILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 38 ~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
..+.+..+++-+++....+|+.+.+....-++..-...
T Consensus 97 ~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~~i~~~~~ 134 (222)
T d1iwga8 97 GALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEF 134 (222)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhhhhcccccchhhhhhhHHHHHHHH
Confidence 34456667788899888888888776666666554443
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=19.09 E-value=41 Score=19.94 Aligned_cols=21 Identities=5% Similarity=0.040 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 033781 55 GFGLFTILVGVSLFNWYKYQK 75 (111)
Q Consensus 55 ~~Gi~~~~~G~~~Y~~~k~~~ 75 (111)
...+++...|...|..+|+++
T Consensus 42 ~~~I~~~V~~~~~~~~~~~r~ 62 (107)
T d3ehbb2 42 ITAVTIFVCLLLLICIVRFNR 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHSBT
T ss_pred HHHHHHHHHHHHHHHhhhhhc
Confidence 445556667888888888864
No 7
>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=18.42 E-value=21 Score=22.70 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.0
Q ss_pred ehhhhhhhhHHHHhhhhhee
Q 033781 26 TVQIAAVVKEAVNILVAVFY 45 (111)
Q Consensus 26 T~sV~G~~K~v~~i~~s~~~ 45 (111)
...++|.+|+++.|.+|++-
T Consensus 4 GvEi~galKNi~Aia~Gi~~ 23 (155)
T d1txga1 4 GTEITSALKNVYSIAIAWIR 23 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999864
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=14.83 E-value=70 Score=17.24 Aligned_cols=19 Identities=21% Similarity=0.011 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 033781 54 KGFGLFTILVGVSLFNWYK 72 (111)
Q Consensus 54 ~~~Gi~~~~~G~~~Y~~~k 72 (111)
...|+.+.++|.++|..+-
T Consensus 28 ~v~~iG~~i~G~IGf~I~l 46 (56)
T d1rh5b_ 28 KVTALGISLLGIIGYIIHV 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678888888988887663
No 9
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.37 E-value=1.2e+02 Score=17.16 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=23.3
Q ss_pred HHHhhhhheecCC--ccchh-hhhHHHHHHHHHHHHHHH
Q 033781 36 AVNILVAVFYFHD--EFTWL-KGFGLFTILVGVSLFNWY 71 (111)
Q Consensus 36 v~~i~~s~~~F~~--~~t~~-~~~Gi~~~~~G~~~Y~~~ 71 (111)
+..+.+.-+=+|| |.|.. +++.++..++|+..+.+.
T Consensus 47 ~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~ 85 (103)
T d1r3jc_ 47 WSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLV 85 (103)
T ss_dssp HHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHH
Confidence 3445556667788 45544 677777778887776543
No 10
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=12.15 E-value=1.7e+02 Score=18.41 Aligned_cols=45 Identities=13% Similarity=0.005 Sum_probs=31.9
Q ss_pred hhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHH
Q 033781 27 VQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 71 (111)
Q Consensus 27 ~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~ 71 (111)
.......=.+......+.+++-+++..+..+..+.+....-|+.+
T Consensus 68 i~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~i~ 112 (199)
T d1iwga7 68 IPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIV 112 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcccHHH
Confidence 334444555666666778888899988888888888777777554
Done!