BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033782
         (111 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GBM|A Chain A, Sulfotransferase Domain From The Curacin Biosynthetic
           Pathway
          Length = 323

 Score = 30.8 bits (68), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 31/65 (47%)

Query: 36  TNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCPAAPRKRKSSLKCNYSGVREFFS 95
           +N  PT+++      +    S  P S  +R+P  +   ++PR   + L+   +G    FS
Sbjct: 1   SNASPTSLEIFATKSSPSGNSARPASVSSRLPGIIFILSSPRSGSTLLRVMLAGHSSLFS 60

Query: 96  PPDLE 100
           PP+L 
Sbjct: 61  PPELH 65


>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
           Complex With Inhibitor Staurosporine
          Length = 278

 Score = 25.8 bits (55), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 43  VDKEVDSGTDEELSTTPTSEDARIPAKLTCPAAPRKRKSSLKCN 86
           V K  D G  +E S+T   +  ++P K T P A R++K S K +
Sbjct: 155 VAKVSDFGLTKEASST--QDTGKLPVKWTAPEALREKKFSTKSD 196


>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
           Inactivator Csk
 pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
           Inactivator Csk
          Length = 263

 Score = 25.8 bits (55), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 43  VDKEVDSGTDEELSTTPTSEDARIPAKLTCPAAPRKRKSSLKCN 86
           V K  D G  +E S+T   +  ++P K T P A R++K S K +
Sbjct: 140 VAKVSDFGLTKEASST--QDTGKLPVKWTAPEALREKKFSTKSD 181


>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
 pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
           Carboxyl-Terminal Src Kinase At 2.5 A Resolution
          Length = 450

 Score = 25.4 bits (54), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 43  VDKEVDSGTDEELSTTPTSEDARIPAKLTCPAAPRKRKSSLK 84
           V K  D G  +E S+T   +  ++P K T P A R++K S K
Sbjct: 327 VAKVSDFGLTKEASST--QDTGKLPVKWTAPEALREKKFSTK 366


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.133    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,601,051
Number of Sequences: 62578
Number of extensions: 143999
Number of successful extensions: 169
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 6
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)