BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033782
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q12C18|DAPE_POLSJ Succinyl-diaminopimelate desuccinylase OS=Polaromonas sp. (strain
JS666 / ATCC BAA-500) GN=dapE PE=3 SV=1
Length = 425
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 19 RWVIAGIP-LRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
+W + G+P L P + + N V A+ E +G D ELSTT + D R AK+ CP
Sbjct: 315 KWTVGGLPFLTTPGELV--NAVRGAIHAE--TGLDTELSTTGGTSDGRFIAKV-CP 365
>sp|Q13XA2|DAPE_BURXL Succinyl-diaminopimelate desuccinylase OS=Burkholderia xenovorans
(strain LB400) GN=dapE PE=3 SV=2
Length = 379
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 19 RWVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
+W ++G+P P + +N + A+ E +G ELSTT + D R A++ CP
Sbjct: 289 QWTVSGLPFLTPRGDL-SNALAAAIRDE--TGVTTELSTTGGTSDGRFIARI-CP 339
>sp|B2T5K8|DAPE_BURPP Succinyl-diaminopimelate desuccinylase OS=Burkholderia phytofirmans
(strain DSM 17436 / PsJN) GN=dapE PE=3 SV=1
Length = 379
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 12 GLESEGKRWVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKL 70
GLE + +W ++G+P P + +N + A+ E +G + ELSTT + D R A++
Sbjct: 283 GLEYD-LQWTVSGLPFLTPRGDL-SNALAKAIKDE--TGLNTELSTTGGTSDGRFIARI 337
>sp|A9AHS8|DAPE_BURM1 Succinyl-diaminopimelate desuccinylase OS=Burkholderia multivorans
(strain ATCC 17616 / 249) GN=dapE PE=3 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 6 KPQVDGGLESEGKRWVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDAR 65
K Q+D L +W ++G+P P + +N + A+ E +G ELSTT + D R
Sbjct: 281 KHQLDYTL-----KWTVSGLPFLTPRGEL-SNALEHAIRAE--TGLTTELSTTGGTSDGR 332
Query: 66 IPAKLTCP 73
A++ CP
Sbjct: 333 FIARI-CP 339
>sp|Q0BE03|DAPE_BURCM Succinyl-diaminopimelate desuccinylase OS=Burkholderia ambifaria
(strain ATCC BAA-244 / AMMD) GN=dapE PE=3 SV=1
Length = 379
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 19 RWVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
+W ++G+P P + +N + A+ E +G ELSTT + D R A++ CP
Sbjct: 289 KWSVSGLPFLTPRGDL-SNALENAIRAE--TGLTTELSTTGGTSDGRFIARI-CP 339
>sp|B1YSH9|DAPE_BURA4 Succinyl-diaminopimelate desuccinylase OS=Burkholderia ambifaria
(strain MC40-6) GN=dapE PE=3 SV=1
Length = 379
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 19 RWVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
+W ++G+P P + +N + A+ E +G ELSTT + D R A++ CP
Sbjct: 289 KWSVSGLPFLTPRGDL-SNALENAIRAE--TGLTTELSTTGGTSDGRFIARI-CP 339
>sp|A4JF88|DAPE_BURVG Succinyl-diaminopimelate desuccinylase OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=dapE PE=3 SV=1
Length = 379
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 19 RWVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
+W ++G+P P + +N + A+ E +G ELSTT + D R A++ CP
Sbjct: 289 KWSVSGLPFLTPRGEL-SNALEHAIRAE--TGVTTELSTTGGTSDGRFIARI-CP 339
>sp|A9IR81|DAPE_BORPD Succinyl-diaminopimelate desuccinylase OS=Bordetella petrii (strain
ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=dapE PE=3 SV=1
Length = 380
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 12 GLESEGKRWVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLT 71
GLE E W + G P P P+ T+ + A+ E +G ELSTT + D R AK+
Sbjct: 282 GLEYE-LDWELGGEPFLTPRGPL-TDALVAAIRAE--TGVAAELSTTGGTSDGRFIAKI- 336
Query: 72 CP 73
CP
Sbjct: 337 CP 338
>sp|A4G4Q7|DAPE_HERAR Succinyl-diaminopimelate desuccinylase OS=Herminiimonas
arsenicoxydans GN=dapE PE=3 SV=1
Length = 375
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 12 GLESEGKRWVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLT 71
GLE + K W I+G P P K ++ + A+ E +G ELSTT + D R A++
Sbjct: 279 GLEYDLK-WSISGYPFLTP-KGSLSDAMADAIKSE--TGVTTELSTTGGTSDGRFIAQI- 333
Query: 72 CP 73
CP
Sbjct: 334 CP 335
>sp|A6SZR5|DAPE_JANMA Succinyl-diaminopimelate desuccinylase OS=Janthinobacterium sp.
(strain Marseille) GN=dapE PE=3 SV=1
Length = 375
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 12 GLESEGKRWVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLT 71
GLE + K W I+G P P K ++ + A+ E +G ELSTT + D R A++
Sbjct: 279 GLEYDLK-WSISGHPFLTP-KGTLSDAMSDAIKSE--TGVTTELSTTGGTSDGRFIAQI- 333
Query: 72 CP 73
CP
Sbjct: 334 CP 335
>sp|Q3JR15|DAPE_BURP1 Succinyl-diaminopimelate desuccinylase OS=Burkholderia pseudomallei
(strain 1710b) GN=dapE PE=3 SV=2
Length = 379
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 20 WVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
W ++G+P P + +N + A+ E +G ELSTT + D R A++ CP
Sbjct: 290 WSVSGLPFLTPRGEL-SNALDAAIRAE--TGVSPELSTTGGTSDGRFIARI-CP 339
>sp|A1V584|DAPE_BURMS Succinyl-diaminopimelate desuccinylase OS=Burkholderia mallei
(strain SAVP1) GN=dapE PE=3 SV=1
Length = 379
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 20 WVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
W ++G+P P + +N + A+ E +G ELSTT + D R A++ CP
Sbjct: 290 WSVSGLPFLTPRGEL-SNALDAAIRAE--TGVSPELSTTGGTSDGRFIARI-CP 339
>sp|Q62JB1|DAPE_BURMA Succinyl-diaminopimelate desuccinylase OS=Burkholderia mallei
(strain ATCC 23344) GN=dapE PE=3 SV=1
Length = 379
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 20 WVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
W ++G+P P + +N + A+ E +G ELSTT + D R A++ CP
Sbjct: 290 WSVSGLPFLTPRGEL-SNALDAAIRAE--TGVSPELSTTGGTSDGRFIARI-CP 339
>sp|A2SB58|DAPE_BURM9 Succinyl-diaminopimelate desuccinylase OS=Burkholderia mallei
(strain NCTC 10229) GN=dapE PE=3 SV=1
Length = 379
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 20 WVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
W ++G+P P + +N + A+ E +G ELSTT + D R A++ CP
Sbjct: 290 WSVSGLPFLTPRGEL-SNALDAAIRAE--TGVSPELSTTGGTSDGRFIARI-CP 339
>sp|A3MKV8|DAPE_BURM7 Succinyl-diaminopimelate desuccinylase OS=Burkholderia mallei
(strain NCTC 10247) GN=dapE PE=3 SV=1
Length = 379
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 20 WVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
W ++G+P P + +N + A+ E +G ELSTT + D R A++ CP
Sbjct: 290 WSVSGLPFLTPRGEL-SNALDAAIRAE--TGVSPELSTTGGTSDGRFIARI-CP 339
>sp|Q63T00|DAPE_BURPS Succinyl-diaminopimelate desuccinylase OS=Burkholderia pseudomallei
(strain K96243) GN=dapE PE=3 SV=2
Length = 379
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 20 WVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
W ++G+P P + +N + A+ E +G ELSTT + D R A++ CP
Sbjct: 290 WSVSGLPFLTPRGEL-SNALDAAIRAE--TGVSPELSTTGGTSDGRFIARI-CP 339
>sp|A3NAW2|DAPE_BURP6 Succinyl-diaminopimelate desuccinylase OS=Burkholderia pseudomallei
(strain 668) GN=dapE PE=3 SV=1
Length = 379
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 20 WVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
W ++G+P P + +N + A+ E +G ELSTT + D R A++ CP
Sbjct: 290 WSVSGLPFLTPRGEL-SNALDAAIRAE--TGVSPELSTTGGTSDGRFIARI-CP 339
>sp|A3NWP5|DAPE_BURP0 Succinyl-diaminopimelate desuccinylase OS=Burkholderia pseudomallei
(strain 1106a) GN=dapE PE=3 SV=1
Length = 379
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 20 WVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
W ++G+P P + +N + A+ E +G ELSTT + D R A++ CP
Sbjct: 290 WSVSGLPFLTPRGEL-SNALDAAIRAE--TGVSPELSTTGGTSDGRFIARI-CP 339
>sp|Q8AA31|NHAA_BACTN Na(+)/H(+) antiporter NhaA OS=Bacteroides thetaiotaomicron (strain
ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
GN=nhaA PE=3 SV=1
Length = 439
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 3 LSGKPQVDGGLESEGKRWVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSE 62
+ KP++D G E R IAG P+ + TN A KEV+S +D +S + E
Sbjct: 245 IPAKPRLDVGKYIEHIRHTIAGFPVVESGSIVLTNE-QIAKLKEVESASDRVISPLQSLE 303
Query: 63 D 63
D
Sbjct: 304 D 304
>sp|Q2SX11|DAPE_BURTA Succinyl-diaminopimelate desuccinylase OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=dapE PE=3 SV=2
Length = 379
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 20 WVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
W ++G+P P + +N + A+ E +G ELSTT + D R A++ CP
Sbjct: 290 WSVSGLPFLTPRGEL-SNALDAAIRAE--TGLSPELSTTGGTSDGRFIARI-CP 339
>sp|Q0KA02|DAPE_CUPNH Succinyl-diaminopimelate desuccinylase OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=dapE PE=3 SV=1
Length = 383
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 20 WVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
W + G P P + ++ + +A+ E ++G ELSTT + D R AK+ CP
Sbjct: 294 WTLGGEPFLTPRGEL-SDALSSAI--EAETGVKTELSTTGGTSDGRFIAKI-CP 343
>sp|Q470C3|DAPE_CUPPJ Succinyl-diaminopimelate desuccinylase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=dapE PE=3
SV=1
Length = 383
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 20 WVIAGIPLRAPLKPIYTNPVPTAVDKEVDSGTDEELSTTPTSEDARIPAKLTCP 73
W + G P P + ++ + A+ E ++G ELSTT + D R AK+ CP
Sbjct: 294 WTLGGEPFLTPRGDL-SDALSAAI--EAETGVKTELSTTGGTSDGRFIAKI-CP 343
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,658,235
Number of Sequences: 539616
Number of extensions: 1978941
Number of successful extensions: 3876
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 3867
Number of HSP's gapped (non-prelim): 47
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)