BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033783
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BH8|A Chain A, Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE
pdb|1BH9|A Chain A, Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE WITH
BOUND Pcmbs
Length = 45
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 18 IQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDI 57
++ MMYGFGDD NP E+V ++ED+V+E++T++ HKA I
Sbjct: 6 LRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 149
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 14 KKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKG 61
+ + I+ M+ G DP PLP A + V+++ T H D G G
Sbjct: 23 QSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCT---HHKDDPGGSG 67
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|F Chain F, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|H Chain H, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|J Chain J, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|L Chain L, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|N Chain N, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|P Chain P, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|2OVP|A Chain A, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 149
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 14 KKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKG 61
+ + I+ M+ G DP PLP A + V+++ T H D G G
Sbjct: 23 QSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCT---HHKDDPGGSG 67
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 6 LSASEESFKKIVIQHMMY------GFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGS 59
L + ++ ++ + H+ Y G DD + E V V + V+ L H + IG
Sbjct: 163 LVTNTQTGEEHTVTHLQYVAWPDHGVPDDSSDFLEFVNYVRSLRVDSEPVLVHCSAGIGR 222
Query: 60 KGGKLSVEDFLYLIRKDLP 78
G +++E + L ++LP
Sbjct: 223 TGVLVTMETAMCLTERNLP 241
>pdb|3HDX|A Chain A, Crystal Structure Of Susd Superfamily Protein
(Np_809182.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.50 A Resolution
Length = 478
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 44 VEYVTDLAHKAQDIGSKGGKL---SVEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAF 100
++ + D + K D G G + +ED L + L LNR TE +S ++ R
Sbjct: 338 IKIIQDGSAKDNDFGVFGSSIVFTRLEDITLLRAEALCALNRSTEAVSYLNXIRTNRGLR 397
Query: 101 EVDEEK 106
EV +K
Sbjct: 398 EVSFKK 403
>pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From
Pyrococcus Horikoshii Ot3
Length = 403
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 2 KQLHLSASE--ESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGS 59
K L + ASE E K + ++ G PNP ++ DI+VE + A KA G+
Sbjct: 12 KALEMRASEVRELLKLVETSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGT 71
Query: 60 KGG 62
G
Sbjct: 72 TKG 74
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 58 GSKGGKLSVEDFLYLIRKDLPKLNRCTELLSMQEELKQA 96
G++G + +EDF I DLPKL ++ LKQA
Sbjct: 324 GARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQA 362
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,169,688
Number of Sequences: 62578
Number of extensions: 122238
Number of successful extensions: 222
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 13
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)