BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033783
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R9W6|TAF13_PONAB Transcription initiation factor TFIID subunit 13 OS=Pongo abelii
GN=TAF13 PE=2 SV=1
Length = 124
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Query: 18 IQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDL 77
++ MMYGFGDD NP E+V ++ED+V+E++T++ HKA IG + G++ VED ++LIRKD
Sbjct: 36 LRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQ-GRVQVEDIVFLIRKDP 94
Query: 78 PKLNRCTELLSMQEELKQARKAFE 101
K R +LL+M EELK+ARKAF+
Sbjct: 95 RKFARVKDLLTMNEELKRARKAFD 118
>sp|P61216|TAF13_MOUSE Transcription initiation factor TFIID subunit 13 OS=Mus musculus
GN=Taf13 PE=2 SV=1
Length = 124
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Query: 18 IQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDL 77
++ MMYGFGDD NP E+V ++ED+V+E++T++ HKA IG + G++ VED ++LIRKD
Sbjct: 36 LRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQ-GRVQVEDIVFLIRKDP 94
Query: 78 PKLNRCTELLSMQEELKQARKAFE 101
K R +LL+M EELK+ARKAF+
Sbjct: 95 RKFARVKDLLTMNEELKRARKAFD 118
>sp|Q15543|TAF13_HUMAN Transcription initiation factor TFIID subunit 13 OS=Homo sapiens
GN=TAF13 PE=1 SV=1
Length = 124
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Query: 18 IQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDL 77
++ MMYGFGDD NP E+V ++ED+V+E++T++ HKA IG + G++ VED ++LIRKD
Sbjct: 36 LRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQ-GRVQVEDIVFLIRKDP 94
Query: 78 PKLNRCTELLSMQEELKQARKAFE 101
K R +LL+M EELK+ARKAF+
Sbjct: 95 RKFARVKDLLTMNEELKRARKAFD 118
>sp|Q148M7|TAF13_BOVIN Transcription initiation factor TFIID subunit 13 OS=Bos taurus
GN=TAF13 PE=2 SV=1
Length = 124
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Query: 18 IQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDL 77
++ MMYGFGDD NP E+V ++ED+V+E++T++ HKA IG + G++ VED ++LIRKD
Sbjct: 36 LRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIGRQ-GRVQVEDIVFLIRKDP 94
Query: 78 PKLNRCTELLSMQEELKQARKAFE 101
K R +LL+M EELK+ARKAF+
Sbjct: 95 RKFARVKDLLTMNEELKRARKAFD 118
>sp|Q54CN8|TAF13_DICDI Transcription initiation factor TFIID subunit 13 OS=Dictyostelium
discoideum GN=taf13 PE=3 SV=1
Length = 106
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 59/84 (70%)
Query: 18 IQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDL 77
++HMMYGFGD PL E++ L+E++V E++ ++ KA + +K GK ED ++L+RKD
Sbjct: 13 LKHMMYGFGDVREPLHESIDLLEELVFEFIQEMTLKAAQVSNKRGKFQTEDLVFLVRKDP 72
Query: 78 PKLNRCTELLSMQEELKQARKAFE 101
K R ELL M EELK+A+KAF+
Sbjct: 73 KKYYRVIELLRMNEELKKAKKAFD 96
>sp|O60076|TAF13_SCHPO Transcription initiation factor TFIID subunit 13
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf13 PE=3 SV=3
Length = 111
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 55/88 (62%)
Query: 18 IQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDL 77
++ +MY FGDD NP P+++ ++E+IVV+Y+ ++ +A I K+ V+DF + +R D
Sbjct: 22 LKSLMYAFGDDVNPAPDSINVLEEIVVDYINEMCLEAARIAGNRNKVKVDDFKFALRDDP 81
Query: 78 PKLNRCTELLSMQEELKQARKAFEVDEE 105
KL R ELL +Q+ + R + +++
Sbjct: 82 KKLGRVEELLVLQKMIADTRNVMKYNKD 109
>sp|O14311|SPT3_SCHPO SAGA complex subunit spt3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=spt3 PE=1 SV=2
Length = 307
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 15 KIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYL 72
++ IQ MM+ G+ +PLPET LVE+++ V ++ +A ++ + G ++VED +L
Sbjct: 11 RVEIQQMMFILGEVQDPLPETTQLVEELIRGQVMEMLIQANELALRRGSRSITVEDLFFL 70
Query: 73 IRKDLPKLNRCTELLSMQEELKQAR 97
IR D K+NR LS +E K+A+
Sbjct: 71 IRHDRAKVNRLKTYLSWKEVRKKAK 95
>sp|P11747|TAF13_YEAST Transcription initiation factor TFIID subunit 13 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF13 PE=1
SV=2
Length = 167
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 18 IQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLA----HKAQDIGSKGGKLSVEDFLYLI 73
+ ++Y +GD P PL TV ++++V Y+ D+ H AQ+ S+ KL +EDF + +
Sbjct: 15 VSSLLYAYGDVPQPLQATVQCLDELVSGYLVDVCTNAFHTAQN--SQRNKLRLEDFKFAL 72
Query: 74 RKDLPKLNRCTELLSMQEELKQARKAF-EVDEE 105
RKD KL R EL++ + + +A+K F E D +
Sbjct: 73 RKDPIKLGRAEELIATNKLITEAKKQFNETDNQ 105
>sp|O75486|SUPT3_HUMAN Transcription initiation protein SPT3 homolog OS=Homo sapiens
GN=SUPT3H PE=1 SV=2
Length = 399
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 18 IQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGS-KGGK-LSVEDFLYLIRK 75
+Q MMY GD PL ET LVED+V + +L +A ++ +G + ++ ED L+L+RK
Sbjct: 112 LQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVSQLRGARVITPEDLLFLMRK 171
Query: 76 DLPKLNR 82
D KL R
Sbjct: 172 DKKKLRR 178
>sp|O13472|SPT3_KLULA Protein SPT3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359
/ DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SPT3
PE=3 SV=1
Length = 328
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 15 KIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSV--EDFLYL 72
++ IQ MM+ G++ P ET +L+EDIV V ++ +A + G S+ ED ++L
Sbjct: 8 RVEIQQMMFVSGENNEPPVETTSLIEDIVRGQVVEILLQATRTANCRGSKSIVPEDVIFL 67
Query: 73 IRKDLPKLNRCTELLSMQE 91
IR D K+NR LS ++
Sbjct: 68 IRHDKAKVNRLRTYLSWKD 86
>sp|P06844|SPT3_YEAST Protein SPT3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SPT3 PE=1 SV=1
Length = 337
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 15 KIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSV--EDFLYL 72
++ IQ MM+ G+ +P ET +L+EDIV V ++ ++ G S+ ED ++L
Sbjct: 8 RVEIQQMMFVSGEINDPPVETTSLIEDIVRGQVIEILLQSNKTAHLRGSRSILPEDVIFL 67
Query: 73 IRKDLPKLNRCTELLSMQEELKQAR 97
IR D K+NR LS ++ K A+
Sbjct: 68 IRHDKAKVNRLRTYLSWKDLRKNAK 92
>sp|Q89AY1|DAPE_BUCBP Succinyl-diaminopimelate desuccinylase OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=dapE PE=3 SV=1
Length = 377
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 30 NPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--------KLSVEDF-LYLIRKDLPKL 80
NP V L+ DIVV V +L H + ++ + GG +L + L LI K + K
Sbjct: 292 NPFLTKVGLLSDIVVRSVEELCHISPNLSTSGGTSDGRFIAELGSQIIELGLINKTIHKA 351
Query: 81 NRCTELLSMQ 90
N C E+ ++
Sbjct: 352 NECVEIKDLR 361
>sp|B7GHW7|BIOF_ANOFW Putative 8-amino-7-oxononanoate synthase OS=Anoxybacillus
flavithermus (strain DSM 21510 / WK1) GN=bioF PE=3 SV=1
Length = 390
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 6 LSASEESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLS 65
L +E +KI++ ++ D PL E V L E V D AH + G KG ++
Sbjct: 160 LKKAERHKRKIIVTDTIFSMDGDVAPLRELVVLKETYGAMLVVDEAHASGIYGEKGQGMA 219
Query: 66 VE 67
E
Sbjct: 220 HE 221
>sp|A5GUP6|MNMA_SYNR3 tRNA-specific 2-thiouridylase MnmA OS=Synechococcus sp. (strain
RCC307) GN=mnmA PE=3 SV=1
Length = 383
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 5 HLSASEESFKKIVIQHMMYGFGDDPNPLP 33
H+ S ++F++ ++Q ++ G+GD PLP
Sbjct: 86 HVVDSRDTFQQEIVQFLVQGYGDGITPLP 114
>sp|A2ALK8|PTN3_MOUSE Tyrosine-protein phosphatase non-receptor type 3 OS=Mus musculus
GN=Ptpn3 PE=2 SV=1
Length = 913
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 6 LSASEESFKKIVIQHMMY------GFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGS 59
L + E+ ++ + H+ Y G DD + E V V + V+ L H + IG
Sbjct: 789 LVTNTETGEEHTVTHLQYVAWPDHGVPDDSSDFLEFVKYVRSLRVDGEPALVHCSAGIGR 848
Query: 60 KGGKLSVEDFLYLIRKDLP 78
G +++E + LI ++LP
Sbjct: 849 TGVLVTMETAMCLIERNLP 867
>sp|A6LMP4|BIOF_THEM4 8-amino-7-oxononanoate synthase OS=Thermosipho melanesiensis
(strain BI429 / DSM 12029) GN=Tmel_1346 PE=3 SV=1
Length = 391
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 6 LSASEESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKG 61
L ++++ +K++I ++ D PLPE V L E + D AH +GS G
Sbjct: 162 LKEAKDARRKLIITDGVFSMDGDLAPLPEIVELAEKYNAMVMVDDAHGEGVLGSHG 217
>sp|B7ID58|BIOF_THEAB 8-amino-7-oxononanoate synthase OS=Thermosipho africanus (strain
TCF52B) GN=THA_1494 PE=3 SV=1
Length = 391
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 6 LSASEESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKG 61
L ++++ +K++I ++ D PLPE V L E + D AH +GS G
Sbjct: 162 LKEAKDARRKLIITDGVFSMDGDLAPLPEIVELAEKYNAMVMVDDAHGEGVLGSHG 217
>sp|Q9QUM7|MSH5_MOUSE MutS protein homolog 5 OS=Mus musculus GN=Msh5 PE=2 SV=1
Length = 833
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 1 MKQLHLSASEESFKKIVIQHMMYGFG--DDPNPLPETVALVEDIVVEYVTDLAHKAQDIG 58
+K++ LS ++ S +++ + + G D LP+++ L +DI E+ DL H A IG
Sbjct: 319 LKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFQDIAQEFSDDLHHIASLIG 378
>sp|Q9C5J6|IPT9_ARATH tRNA dimethylallyltransferase 9 OS=Arabidopsis thaliana GN=IPT9
PE=2 SV=1
Length = 463
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 16 IVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTD 49
+ ++ MYG D P P PE +A D++V + T+
Sbjct: 150 LYLRWFMYGKPDVPKPSPEVIAEAHDMLVGFQTE 183
>sp|Q6C1W9|TRM10_YARLI tRNA (guanine(9)-N1)-methyltransferase OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=TRM10 PE=3 SV=1
Length = 371
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 53 KAQDIGSKGGKLSVEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAFEV 102
KA G + G+L + DF+ L + + N E+L ELK + AFE
Sbjct: 242 KASKQGLQTGRLPIADFIKLSGRKVLTTNHVFEILLKWTELKDWKAAFEA 291
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,842,995
Number of Sequences: 539616
Number of extensions: 1594007
Number of successful extensions: 3747
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3715
Number of HSP's gapped (non-prelim): 30
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)