Query 033783
Match_columns 111
No_of_seqs 103 out of 221
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 10:10:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh9_A TAFII18; histone fold, 99.9 5.7E-22 2E-26 119.5 6.0 45 13-57 1-45 (45)
2 3b0b_B CENP-S, centromere prot 98.2 4.2E-06 1.4E-10 58.0 7.5 60 29-88 38-99 (107)
3 3b0c_T CENP-T, centromere prot 97.6 0.00018 6.1E-09 49.7 6.3 71 7-78 2-74 (111)
4 1id3_B Histone H4; nucleosome 97.0 0.0025 8.6E-08 43.3 6.7 68 8-76 24-93 (102)
5 3v9r_A MHF1, uncharacterized p 97.0 0.0022 7.4E-08 43.0 6.2 52 29-80 31-84 (90)
6 4dra_A Centromere protein S; D 96.9 0.0039 1.3E-07 43.5 7.5 59 29-87 46-106 (113)
7 1ku5_A HPHA, archaeal histon; 96.9 0.0021 7.1E-08 40.4 5.6 49 27-75 20-70 (70)
8 2hue_C Histone H4; mini beta s 96.8 0.0028 9.7E-08 41.4 5.9 65 11-76 9-75 (84)
9 3vh5_A CENP-S; histone fold, c 96.8 0.0056 1.9E-07 44.2 7.8 60 29-88 38-99 (140)
10 2yfw_B Histone H4, H4; cell cy 96.7 0.0033 1.1E-07 42.6 5.8 64 12-76 29-94 (103)
11 1tzy_D Histone H4-VI; histone- 96.7 0.0048 1.7E-07 41.7 6.6 66 10-76 27-94 (103)
12 1h3o_B Transcription initiatio 96.5 0.014 4.6E-07 38.0 7.3 63 14-76 7-71 (76)
13 1n1j_A NF-YB; histone-like PAI 96.3 0.017 5.9E-07 38.0 7.2 78 13-94 9-89 (93)
14 2byk_B Chrac-14; nucleosome sl 96.3 0.017 5.8E-07 40.6 7.5 60 17-76 14-76 (128)
15 1jfi_B DR1 protein, transcript 96.3 0.06 2.1E-06 40.0 10.7 61 15-75 18-80 (179)
16 1b67_A Protein (histone HMFA); 96.2 0.019 6.6E-07 35.5 6.5 49 27-75 16-66 (68)
17 1n1j_B NF-YC; histone-like PAI 96.1 0.026 9E-07 37.5 7.2 63 16-78 23-87 (97)
18 2ly8_A Budding yeast chaperone 95.5 0.031 1.1E-06 39.3 5.8 52 26-77 60-113 (121)
19 1taf_A TFIID TBP associated fa 95.4 0.086 3E-06 33.4 7.1 55 20-75 9-65 (68)
20 2byk_A Chrac-16; nucleosome sl 95.1 0.036 1.2E-06 39.6 5.3 79 17-96 24-115 (140)
21 3b0c_W CENP-W, centromere prot 95.1 0.043 1.5E-06 34.9 5.0 57 18-75 10-69 (76)
22 4g92_C HAPE; transcription fac 94.9 0.081 2.8E-06 36.5 6.3 62 16-77 45-108 (119)
23 1f1e_A Histone fold protein; a 94.8 0.053 1.8E-06 39.4 5.4 51 29-79 98-150 (154)
24 1taf_B TFIID TBP associated fa 94.4 0.14 4.7E-06 32.7 6.1 56 18-74 12-69 (70)
25 1jfi_A Transcription regulator 94.0 0.098 3.4E-06 34.9 5.0 61 17-77 16-78 (98)
26 1f1e_A Histone fold protein; a 93.1 0.27 9.1E-06 35.6 6.4 55 18-73 10-67 (154)
27 2l5a_A Histone H3-like centrom 92.7 0.3 1E-05 37.7 6.6 51 26-76 174-226 (235)
28 4dra_E Centromere protein X; D 92.7 0.36 1.2E-05 31.8 6.1 57 15-71 15-75 (84)
29 3vlf_B 26S protease regulatory 90.1 0.23 7.8E-06 31.8 2.9 48 43-90 36-88 (88)
30 3b0b_C CENP-X, centromere prot 89.1 1.3 4.3E-05 28.8 6.0 59 13-71 9-71 (81)
31 2f8n_G Core histone macro-H2A. 85.2 3.2 0.00011 28.6 6.6 61 18-78 28-90 (120)
32 2hue_B Histone H3; mini beta s 84.1 5.7 0.00019 25.5 7.0 50 25-74 20-71 (77)
33 2yfv_A Histone H3-like centrom 83.0 3.6 0.00012 27.6 5.9 58 17-74 39-98 (100)
34 3nqj_A Histone H3-like centrom 82.1 4.7 0.00016 26.2 6.0 47 28-74 25-73 (82)
35 3kw6_A 26S protease regulatory 80.6 1.7 5.8E-05 26.6 3.4 38 38-75 33-72 (78)
36 1tzy_C Histone H3; histone-fol 79.8 8.3 0.00028 27.2 7.1 53 22-74 76-130 (136)
37 2jss_A Chimera of histone H2B. 79.3 5.3 0.00018 29.3 6.3 47 29-75 20-68 (192)
38 2nqb_C Histone H2A; nucleosome 78.8 5.8 0.0002 27.4 6.0 46 33-78 44-91 (123)
39 3aji_B S6C, proteasome (prosom 78.5 3 0.0001 25.7 4.0 39 38-76 31-71 (83)
40 1tzy_A Histone H2A-IV; histone 77.9 6.2 0.00021 27.4 6.0 46 33-78 46-93 (129)
41 3nqu_A Histone H3-like centrom 76.9 6.3 0.00021 28.1 5.8 47 28-74 83-131 (140)
42 2nqb_D Histone H2B; nucleosome 76.5 6.9 0.00023 27.4 5.8 45 31-75 52-98 (123)
43 1tzy_B Histone H2B; histone-fo 76.3 6.9 0.00024 27.5 5.8 45 31-75 55-101 (126)
44 1id3_C Histone H2A.1; nucleoso 75.8 7.1 0.00024 27.2 5.8 45 34-78 47-93 (131)
45 2dzn_B 26S protease regulatory 75.3 3 0.0001 25.8 3.4 36 41-76 31-68 (82)
46 3r45_A Histone H3-like centrom 74.4 5.8 0.0002 28.8 5.1 46 29-74 100-147 (156)
47 1f66_C Histone H2A.Z; nucleoso 74.4 11 0.00037 26.2 6.4 41 38-78 54-96 (128)
48 2krk_A 26S protease regulatory 74.4 3.1 0.00011 26.3 3.4 44 32-75 35-80 (86)
49 2f8n_K Histone H2A type 1; nuc 73.9 9.9 0.00034 27.2 6.2 45 34-78 66-112 (149)
50 2jx0_A ARF GTPase-activating p 71.4 4.6 0.00016 28.7 3.9 39 19-57 2-40 (135)
51 2jss_A Chimera of histone H2B. 62.6 16 0.00054 26.7 5.5 37 42-78 136-174 (192)
52 2cuj_A Transcriptional adaptor 54.8 28 0.00094 23.4 5.2 29 60-88 72-100 (108)
53 4b4t_H 26S protease regulatory 48.4 8.9 0.00031 31.9 2.3 50 40-89 412-466 (467)
54 2i5u_A DNAD domain protein; st 48.3 46 0.0016 20.6 5.9 41 23-66 11-60 (83)
55 1bh9_B TAFII28; histone fold, 48.2 53 0.0018 21.2 7.2 63 12-75 16-81 (89)
56 1dgu_A Calcium-saturated CIB; 43.0 47 0.0016 21.8 5.0 62 11-78 113-174 (183)
57 4ayb_Q DNA-directed RNA polyme 42.9 7.8 0.00027 26.1 0.9 41 63-107 35-75 (104)
58 4b4t_J 26S protease regulatory 40.7 24 0.00082 28.7 3.7 36 40-75 351-388 (405)
59 2a7o_A Huntingtin interacting 39.4 78 0.0027 21.7 5.6 44 32-75 11-59 (112)
60 3v9r_B MHF2, uncharacterized p 37.0 42 0.0014 22.1 3.8 45 26-70 17-70 (88)
61 2aqe_A Transcriptional adaptor 37.0 29 0.00098 22.4 3.0 30 60-89 54-83 (90)
62 4b4t_L 26S protease subunit RP 36.7 29 0.001 28.2 3.6 34 42-75 386-421 (437)
63 1k94_A Grancalcin; penta-EF-ha 36.3 84 0.0029 20.1 5.8 63 11-104 85-147 (165)
64 4b4t_I 26S protease regulatory 35.7 31 0.0011 28.4 3.6 37 39-75 384-422 (437)
65 2elj_A Transcriptional adapter 35.1 87 0.003 19.9 5.1 28 61-88 55-83 (88)
66 4a6d_A Hydroxyindole O-methylt 33.1 1.6E+02 0.0054 22.3 7.6 61 31-91 4-71 (353)
67 2opo_A Polcalcin CHE A 3; calc 32.9 71 0.0024 18.2 5.3 54 10-79 25-78 (86)
68 4b4t_M 26S protease regulatory 32.9 31 0.0011 28.1 3.1 37 40-76 384-422 (434)
69 2wx4_A DCP1, decapping protein 32.4 36 0.0012 19.9 2.6 20 66-85 15-34 (46)
70 2ovk_B RLC, myosin regulatory 32.3 27 0.00093 22.2 2.3 54 10-79 99-152 (153)
71 3h4m_A Proteasome-activating n 32.2 78 0.0027 22.5 5.0 38 38-75 218-257 (285)
72 1uhk_A Aequorin 2, aequorin; E 31.9 86 0.0029 20.3 4.8 16 60-75 122-137 (191)
73 1lv7_A FTSH; alpha/beta domain 31.3 50 0.0017 23.3 3.8 33 43-75 217-251 (257)
74 2lhi_A Calmodulin, serine/thre 29.4 96 0.0033 20.8 4.9 50 11-76 99-148 (176)
75 2l4h_A Calcium and integrin-bi 29.2 69 0.0024 22.2 4.2 19 60-78 187-205 (214)
76 3qrx_A Centrin; calcium-bindin 29.1 1.1E+02 0.0037 19.4 4.9 53 10-77 115-167 (169)
77 1qv0_A Obelin, OBL; photoprote 28.4 1.2E+02 0.0042 19.6 6.5 15 61-75 127-141 (195)
78 3fes_A ATP-dependent CLP endop 28.2 59 0.002 21.5 3.5 34 45-78 84-119 (145)
79 2wx3_A MRNA-decapping enzyme 1 28.2 52 0.0018 19.6 2.8 20 66-85 17-36 (51)
80 1juo_A Sorcin; calcium-binding 27.8 1E+02 0.0035 20.5 4.8 49 10-75 117-165 (198)
81 1k9u_A Polcalcin PHL P 7; poll 26.6 89 0.0031 17.4 5.1 53 10-78 17-69 (78)
82 2qac_A Myosin A tail domain in 26.3 73 0.0025 19.8 3.6 48 10-74 98-145 (146)
83 4b4t_K 26S protease regulatory 26.0 57 0.002 26.4 3.6 37 39-75 375-413 (428)
84 3cuq_A Vacuolar-sorting protei 25.9 1.3E+02 0.0045 22.6 5.4 78 13-98 39-126 (234)
85 1u5t_A Appears to BE functiona 25.7 1.3E+02 0.0043 22.7 5.3 73 13-98 59-140 (233)
86 2l5a_A Histone H3-like centrom 25.0 2.3E+02 0.0078 21.6 7.1 58 17-74 23-82 (235)
87 1gjy_A Sorcin, CP-22, V19; cal 24.7 1.2E+02 0.0041 19.5 4.5 49 10-75 86-134 (167)
88 3fh2_A Probable ATP-dependent 24.1 91 0.0031 20.5 3.9 30 48-77 87-118 (146)
89 3j04_B Myosin regulatory light 23.5 31 0.0011 21.5 1.3 53 11-78 91-143 (143)
90 1k6k_A ATP-dependent CLP prote 23.4 96 0.0033 20.0 3.8 34 45-78 4-39 (143)
91 1s6c_A KV4 potassium channel-i 23.3 1.3E+02 0.0045 19.4 4.5 25 60-84 153-177 (183)
92 1ixz_A ATP-dependent metallopr 22.9 74 0.0025 22.4 3.4 29 45-73 223-253 (254)
93 1q80_A SCP, sarcoplasmic calci 22.1 47 0.0016 21.3 2.0 61 10-76 20-82 (174)
94 2sas_A Sarcoplasmic calcium-bi 22.0 1.3E+02 0.0045 19.1 4.3 64 10-75 23-88 (185)
95 1khy_A CLPB protein; alpha hel 21.3 1.3E+02 0.0044 19.5 4.1 33 45-77 8-42 (148)
96 2qz4_A Paraplegin; AAA+, SPG7, 20.9 43 0.0015 23.4 1.7 32 44-75 215-248 (262)
97 1utr_A Uteroglobin; clara cell 20.7 87 0.003 20.2 3.1 38 5-42 18-62 (96)
98 2y1q_A CLPC N-domain, negative 20.3 1.1E+02 0.0038 19.9 3.6 33 45-77 8-42 (150)
No 1
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=99.86 E-value=5.7e-22 Score=119.54 Aligned_cols=45 Identities=47% Similarity=0.896 Sum_probs=43.0
Q ss_pred hhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033783 13 FKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDI 57 (111)
Q Consensus 13 ~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~ 57 (111)
+|++||++|||||||+++|++||+++|||||++||+++|++|.++
T Consensus 1 lF~~ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~v 45 (45)
T 1bh9_A 1 LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45 (45)
T ss_dssp CCHHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999999999864
No 2
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.24 E-value=4.2e-06 Score=58.04 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhChhHHhHHHHHHH
Q 033783 29 PNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLPKLNRCTELLS 88 (111)
Q Consensus 29 ~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D~~Kl~Rl~~lL~ 88 (111)
....++++..|.+++..|+.+++..|...|.-.|+ |++||+.+++|++|..+++|+++..
T Consensus 38 ~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~~~~~ 99 (107)
T 3b0b_B 38 VLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQKSD 99 (107)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHHHHHH
Confidence 46789999999999999999999999999986665 9999999999999999999999875
No 3
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.57 E-value=0.00018 Score=49.70 Aligned_cols=71 Identities=14% Similarity=0.271 Sum_probs=54.2
Q ss_pred CcchhhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhChh
Q 033783 7 SASEESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLP 78 (111)
Q Consensus 7 ~~~~~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D~~ 78 (111)
||.+.++-..-|+.+|=.+|. ..-..++...+.+++.+|+.+++..|...|...|+ |+.+|+.+++|+++.
T Consensus 2 ~~~d~~lP~a~I~Ri~r~~g~-~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 2 STREPEIASSLIKQIFSHYVK-TPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp --------CHHHHHHHHHHHC-SCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHHHHCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 455566666678888877765 56788899999999999999999999999986554 999999999998753
No 4
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.97 E-value=0.0025 Score=43.26 Aligned_cols=68 Identities=9% Similarity=0.139 Sum_probs=56.1
Q ss_pred cchhhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcHHHHHHHHhhC
Q 033783 8 ASEESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKD 76 (111)
Q Consensus 8 ~~~~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rg--ki~~eDl~F~lR~D 76 (111)
.+++.+-..-|+.++=-.| +..-..+....+.+++..|+.++++.|..++...+ .++.+|+.++||..
T Consensus 24 ~~i~~ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 24 DNIQGITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp CCGGGSCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred hccCCCCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3455566667888887766 46778889999999999999999999999987544 49999999999964
No 5
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0022 Score=43.02 Aligned_cols=52 Identities=12% Similarity=0.225 Sum_probs=46.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhChhHH
Q 033783 29 PNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLPKL 80 (111)
Q Consensus 29 ~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D~~Kl 80 (111)
.+..++++..+-+++..|+.++...+...|.-.|+ |+.||+..++|++|.=+
T Consensus 31 ~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~ 84 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQ 84 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHH
Confidence 46899999999999999999999999999986555 99999999999998643
No 6
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=96.94 E-value=0.0039 Score=43.51 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=50.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhChhHHhHHHHHH
Q 033783 29 PNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLPKLNRCTELL 87 (111)
Q Consensus 29 ~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D~~Kl~Rl~~lL 87 (111)
....++++..|-+++..|+.++...+...|.-.|+ |+.||+..++|++|.=+.=|+++.
T Consensus 46 ~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~~~~ 106 (113)
T 4dra_A 46 MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKS 106 (113)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHHHHH
Confidence 45889999999999999999999999999975554 999999999999997665555543
No 7
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=96.93 E-value=0.0021 Score=40.41 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=43.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 27 DDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 27 D~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
++..-.++++..+.+++..|+.+++..|..+|...|+ |+.+|+.+++|+
T Consensus 20 g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 20 GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 3567889999999999999999999999999986554 999999999874
No 8
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=96.83 E-value=0.0028 Score=41.38 Aligned_cols=65 Identities=9% Similarity=0.169 Sum_probs=53.5
Q ss_pred hhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhC
Q 033783 11 ESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKD 76 (111)
Q Consensus 11 ~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D 76 (111)
+.+-..-|+.++=..|- ..-..+....+.+++..|+.++++.|..++...|+ ++.+|+.++||..
T Consensus 9 ~~ip~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 9 QGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CSSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 33455567778877664 67888899999999999999999999999975544 9999999999964
No 9
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=96.82 E-value=0.0056 Score=44.17 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhChhHHhHHHHHHH
Q 033783 29 PNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLPKLNRCTELLS 88 (111)
Q Consensus 29 ~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D~~Kl~Rl~~lL~ 88 (111)
....++++..|-+++..|+.++...+...|...|+ |+.+|+..++|++|.=+.-|+++..
T Consensus 38 ~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~~~ 99 (140)
T 3vh5_A 38 VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQKSD 99 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHHHH
Confidence 45789999999999999999999999999986565 9999999999999987777777665
No 10
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=96.75 E-value=0.0033 Score=42.57 Aligned_cols=64 Identities=11% Similarity=0.168 Sum_probs=52.0
Q ss_pred hhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcHHHHHHHHhhC
Q 033783 12 SFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKD 76 (111)
Q Consensus 12 ~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rg--ki~~eDl~F~lR~D 76 (111)
-+-..-|..++=..|- ..-..+....+.+++..|+.+++..|..+|...+ .|+.+|+.++||+.
T Consensus 29 gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 29 GITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp -CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3444567777777665 6677889999999999999999999999987544 49999999999964
No 11
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=96.74 E-value=0.0048 Score=41.66 Aligned_cols=66 Identities=9% Similarity=0.139 Sum_probs=54.3
Q ss_pred hhhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcHHHHHHHHhhC
Q 033783 10 EESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKD 76 (111)
Q Consensus 10 ~~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rg--ki~~eDl~F~lR~D 76 (111)
++-+-..-|..++=-.|- ..-..+....+.++|..|+.+++..|..+|...+ .|+.+|+.++||+.
T Consensus 27 ~~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 27 IQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp GGGSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 444555678888877775 6777889999999999999999999999987544 49999999999975
No 12
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.52 E-value=0.014 Score=38.03 Aligned_cols=63 Identities=11% Similarity=0.208 Sum_probs=51.3
Q ss_pred hHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhC
Q 033783 14 KKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKD 76 (111)
Q Consensus 14 ~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D 76 (111)
...-|+.|+--..=.....++.-.++-+|.-+||.+++..|+++|..||. +.+-|+.|.+.+.
T Consensus 7 ~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 7 TKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp CHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 34456666655555566778888899999999999999999999998886 8999999998753
No 13
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.34 E-value=0.017 Score=37.95 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=58.5
Q ss_pred hhHHHHHHhhhhhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcHHHHHHHHhhChhHHhHHHHHHHH
Q 033783 13 FKKIVIQHMMYGFG-DDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKDLPKLNRCTELLSM 89 (111)
Q Consensus 13 ~~~~EI~~mMy~fG-D~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rg--ki~~eDl~F~lR~D~~Kl~Rl~~lL~~ 89 (111)
+=..=|+.+|=.-| |+..-..++..++-+.+..||..|...|..+|...| .|+.+|+..+++ .++-..+..-.
T Consensus 9 LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~----~l~F~~~i~~~ 84 (93)
T 1n1j_A 9 LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS----TLGFDSYVEPL 84 (93)
T ss_dssp CCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH----HTTCGGGHHHH
T ss_pred CChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH----HcCcHhhHHHH
Confidence 33445677777764 567789999999999999999999999999987544 499999999997 44444444444
Q ss_pred HHHHH
Q 033783 90 QEELK 94 (111)
Q Consensus 90 k~~ik 94 (111)
+..+.
T Consensus 85 ~~~l~ 89 (93)
T 1n1j_A 85 KLYLQ 89 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 14
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=96.31 E-value=0.017 Score=40.56 Aligned_cols=60 Identities=12% Similarity=0.190 Sum_probs=51.6
Q ss_pred HHHHhhhh-hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhC
Q 033783 17 VIQHMMYG-FGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKD 76 (111)
Q Consensus 17 EI~~mMy~-fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D 76 (111)
=|..+|=. .-|+..-..++..+|-+.+..||..|...|..+|...|+ |+.+||..++...
T Consensus 14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 46777774 447788899999999999999999999999999875554 9999999999975
No 15
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.30 E-value=0.06 Score=40.03 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=53.0
Q ss_pred HHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 15 KIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 15 ~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
..=|..+|-..|....-..|+..+|-+.+..||..|...|..+|...|+ |+.+|++.+|..
T Consensus 18 ~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~ 80 (179)
T 1jfi_B 18 RAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES 80 (179)
T ss_dssp HHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 3457888888876667889999999999999999999999999976554 999999999995
No 16
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=96.21 E-value=0.019 Score=35.47 Aligned_cols=49 Identities=12% Similarity=0.212 Sum_probs=43.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 27 DDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 27 D~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
++..-..++..++.+.+..|+..+...|..+|...|+ |+.+|+..++|.
T Consensus 16 ~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 16 GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4467889999999999999999999999999975554 999999999874
No 17
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.10 E-value=0.026 Score=37.54 Aligned_cols=63 Identities=19% Similarity=0.075 Sum_probs=55.8
Q ss_pred HHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhChh
Q 033783 16 IVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLP 78 (111)
Q Consensus 16 ~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D~~ 78 (111)
.=|..+|=.-+|+..-..++.-++-..+-.|+.+++..|...|...++ |+.+||..+++++..
T Consensus 23 arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~ 87 (97)
T 1n1j_B 23 ARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQ 87 (97)
T ss_dssp HHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGG
T ss_pred HHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcH
Confidence 458888988899999999999999999999999999999999875444 999999999999864
No 18
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.031 Score=39.26 Aligned_cols=52 Identities=6% Similarity=0.105 Sum_probs=42.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCcHHHHHHHHhhCh
Q 033783 26 GDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSK--GGKLSVEDFLYLIRKDL 77 (111)
Q Consensus 26 GD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~--Rgki~~eDl~F~lR~D~ 77 (111)
|.++.-..+...-+-+++..|+.++++.|..++.. |..++.+|+.|++++--
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 113 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTT
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCC
Confidence 55666677777788888889999999999988874 44499999999998753
No 19
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.39 E-value=0.086 Score=33.40 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=44.4
Q ss_pred HhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 20 HMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 20 ~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
.++=-.|= .+=.+..+..+-|++..|..+++..|..+|.-.|+ |+.||+..+++.
T Consensus 9 ~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 9 SILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 34444454 45677888888999999999999999999986665 999999998864
No 20
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=95.13 E-value=0.036 Score=39.55 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=50.9
Q ss_pred HHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCC--CCcHHHHHHHHhhC----------hhHHhHH
Q 033783 17 VIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIG-SKGG--KLSVEDFLYLIRKD----------LPKLNRC 83 (111)
Q Consensus 17 EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a-~~Rg--ki~~eDl~F~lR~D----------~~Kl~Rl 83 (111)
=|+.+|=.-.|+..-..++.-+|-..+--||..|+..|..+| ...+ .|+.+||..+++++ |.|. .+
T Consensus 24 RIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~divP~ki-~l 102 (140)
T 2byk_A 24 RVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQIVPQKI-RV 102 (140)
T ss_dssp -----CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTTTSCSCC---
T ss_pred HHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhccccchh-hH
Confidence 477888888888999999999999999999999999999999 5443 49999999999986 3332 45
Q ss_pred HHHHHHHHHHHHH
Q 033783 84 TELLSMQEELKQA 96 (111)
Q Consensus 84 ~~lL~~k~~ik~a 96 (111)
.+|+.+...-+++
T Consensus 103 ~~~~~~~~~~~~~ 115 (140)
T 2byk_A 103 HQFQEMLRLNRSA 115 (140)
T ss_dssp -------------
T ss_pred HHHHHHHHhcccc
Confidence 5555554444444
No 21
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=95.06 E-value=0.043 Score=34.87 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=45.7
Q ss_pred HHHhhh-hhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcHHHHHHHHhh
Q 033783 18 IQHMMY-GFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRK 75 (111)
Q Consensus 18 I~~mMy-~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rg--ki~~eDl~F~lR~ 75 (111)
|..+|= ..+|. .-..++..+|-+.+.+|+..|..+|...|...| .|+.+|+..+++.
T Consensus 10 V~rI~K~~~p~~-~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 10 LRKIIKKHKPHL-RLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp HHHHHHHHCTTC-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHhCCCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 444554 44654 456899999999999999999999999987544 4999999999875
No 22
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=94.86 E-value=0.081 Score=36.48 Aligned_cols=62 Identities=16% Similarity=0.073 Sum_probs=53.9
Q ss_pred HHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhCh
Q 033783 16 IVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDL 77 (111)
Q Consensus 16 ~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D~ 77 (111)
.=|..+|=.-.|+..-..++.-++-..+-.||..|+..|...|...++ |+.+||.-+++++.
T Consensus 45 aRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e 108 (119)
T 4g92_C 45 ARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSD 108 (119)
T ss_dssp HHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred HHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCc
Confidence 347788877678888889999999999999999999999999875544 99999999999985
No 23
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=94.75 E-value=0.053 Score=39.35 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=43.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhChhH
Q 033783 29 PNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLPK 79 (111)
Q Consensus 29 ~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D~~K 79 (111)
..-..++...+-+++.+|+..+...|...|...|+ |+.+|+.++++++-.|
T Consensus 98 ~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~ 150 (154)
T 1f1e_A 98 ERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK 150 (154)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence 35567888899999999999999999999986554 9999999999987443
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=94.42 E-value=0.14 Score=32.66 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=43.7
Q ss_pred HHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCcHHHHHHHHh
Q 033783 18 IQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGS--KGGKLSVEDFLYLIR 74 (111)
Q Consensus 18 I~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~--~Rgki~~eDl~F~lR 74 (111)
|..+-=..|= .+-.++....+=+-|-..+.++++.|.+++. +|.+++++|+-.++|
T Consensus 12 v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 12 MKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 3444444454 4567788888888899999999999999986 455699999998886
No 25
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=93.99 E-value=0.098 Score=34.86 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=51.2
Q ss_pred HHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcHHHHHHHHhhCh
Q 033783 17 VIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKDL 77 (111)
Q Consensus 17 EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rg--ki~~eDl~F~lR~D~ 77 (111)
=|..+|=.-+|+..-..++.-++-..+--|+.+|+..|.+.|...| .|+.+||.-++++|.
T Consensus 16 RIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e 78 (98)
T 1jfi_A 16 RIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEG 78 (98)
T ss_dssp HHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---
T ss_pred HHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCc
Confidence 4778888888888999999999999999999999999999987544 499999999999864
No 26
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=93.09 E-value=0.27 Score=35.63 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=47.3
Q ss_pred HHHhhhhh-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHH
Q 033783 18 IQHMMYGF-GDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLI 73 (111)
Q Consensus 18 I~~mMy~f-GD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~l 73 (111)
|..+|=-. |+ ..-..+....+-+++.+|+..+...|...|...|+ |+.+|+++++
T Consensus 10 V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 10 IERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp HHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred HHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 44455444 88 77889999999999999999999999999986665 9999999999
No 27
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.3 Score=37.74 Aligned_cols=51 Identities=8% Similarity=0.173 Sum_probs=43.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcHHHHHHHHhhC
Q 033783 26 GDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKD 76 (111)
Q Consensus 26 GD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rg--ki~~eDl~F~lR~D 76 (111)
|.++.-..+...-+-+++..|+.++++.|..+|...| .++.+|+.|++++-
T Consensus 174 gGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 174 GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp TTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 5567788888889999999999999999999987444 49999999999864
No 28
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=92.70 E-value=0.36 Score=31.79 Aligned_cols=57 Identities=12% Similarity=0.268 Sum_probs=44.0
Q ss_pred HHHHHHhhh-hhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcHHHHHH
Q 033783 15 KIVIQHMMY-GFG-DDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLY 71 (111)
Q Consensus 15 ~~EI~~mMy-~fG-D~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rg--ki~~eDl~F 71 (111)
.+=|..+++ .|. |...-..+++.++-+++.-|+.+-+.+|...|...| .+.++||-=
T Consensus 15 ~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 15 KELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp HHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 333444443 333 667788999999999999999999999999887554 499998853
No 29
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=90.07 E-value=0.23 Score=31.78 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh---ChhHHhHHHHHHHHH
Q 033783 43 VVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK---DLPKLNRCTELLSMQ 90 (111)
Q Consensus 43 v~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~---D~~Kl~Rl~~lL~~k 90 (111)
.---|..+|.+|.-.|-+++. |+.+||.-++++ .+.|-++...|+.|+
T Consensus 36 SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 36 TGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC---------------
T ss_pred cHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccchhHHhccC
Confidence 334588999999988876654 999999999985 345667788888775
No 30
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=89.10 E-value=1.3 Score=28.85 Aligned_cols=59 Identities=14% Similarity=0.268 Sum_probs=43.9
Q ss_pred hhHHHHHHhhh-hhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHH
Q 033783 13 FKKIVIQHMMY-GFG-DDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLY 71 (111)
Q Consensus 13 ~~~~EI~~mMy-~fG-D~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F 71 (111)
+..+=|..++. .|. +...-.++++.++-+++.-|+.+-+.+|...|...|. +.++||-=
T Consensus 9 ~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 9 FRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp CCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 33333455554 444 3455689999999999999999999999999876654 88888753
No 31
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=85.19 E-value=3.2 Score=28.58 Aligned_cols=61 Identities=7% Similarity=0.042 Sum_probs=40.9
Q ss_pred HHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCcHHHHHHHHhhChh
Q 033783 18 IQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSK--GGKLSVEDFLYLIRKDLP 78 (111)
Q Consensus 18 I~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~--Rgki~~eDl~F~lR~D~~ 78 (111)
|..+|=--++...-...+.-++-.++-....+++..|.+.|.. +.+|+.+||.-++|+|..
T Consensus 28 i~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeE 90 (120)
T 2f8n_G 28 MLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEE 90 (120)
T ss_dssp HHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHH
T ss_pred HHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHH
Confidence 4445544455555555555566666666666777777776653 445999999999999964
No 32
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=84.11 E-value=5.7 Score=25.45 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=41.2
Q ss_pred hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHh
Q 033783 25 FGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIR 74 (111)
Q Consensus 25 fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR 74 (111)
|.....=..+.+..+.+..-.|+.++...|..+|...|+ |..+|+-.+.|
T Consensus 20 ~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 20 FKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp TCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 433355677888899999999999999999999986665 88899988866
No 33
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=83.01 E-value=3.6 Score=27.64 Aligned_cols=58 Identities=7% Similarity=0.076 Sum_probs=42.1
Q ss_pred HHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHh
Q 033783 17 VIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIR 74 (111)
Q Consensus 17 EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR 74 (111)
||.+-.-.-|..-.=..+.+..+.+..-.|+.+|...|..+|.-.|+ |...|+-.+.|
T Consensus 39 EI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 39 EVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp HHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 44433322233455567888899999999999999999999986666 88899988765
No 34
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=82.05 E-value=4.7 Score=26.17 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=39.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHh
Q 033783 28 DPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIR 74 (111)
Q Consensus 28 ~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR 74 (111)
.-.=..+.+..+.+..-.|+.++...|..+|...|+ |..+|+-.+.|
T Consensus 25 ~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 25 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 345567889999999999999999999999975555 88999987765
No 35
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=80.58 E-value=1.7 Score=26.55 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 38 LVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 38 l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
.-+.+.---|..+|..|...|-+++. |+.+||.-++++
T Consensus 33 ~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 33 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp TCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 33445556688999999998887775 999999998875
No 36
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=79.82 E-value=8.3 Score=27.22 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=42.2
Q ss_pred hhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHh
Q 033783 22 MYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIR 74 (111)
Q Consensus 22 My~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR 74 (111)
.--|...-.=..+.+..+.+..-.|+.+|...|..+|...|+ |...|+-.+.|
T Consensus 76 ~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 76 AQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp HHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 333433355677888899999999999999999999986666 88899988765
No 37
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=79.34 E-value=5.3 Score=29.26 Aligned_cols=47 Identities=11% Similarity=0.239 Sum_probs=41.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCcHHHHHHHHhh
Q 033783 29 PNPLPETVALVEDIVVEYVTDLAHKAQDIGSKG--GKLSVEDFLYLIRK 75 (111)
Q Consensus 29 ~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~R--gki~~eDl~F~lR~ 75 (111)
..-..+++.+|..++.+.+.-++.+|.+++... ..++..|+-.++|-
T Consensus 20 ~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 20 TGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 447899999999999999999999999998643 44999999999984
No 38
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=78.80 E-value=5.8 Score=27.35 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCcHHHHHHHHhhChh
Q 033783 33 PETVALVEDIVVEYVTDLAHKAQDIGSK--GGKLSVEDFLYLIRKDLP 78 (111)
Q Consensus 33 ~eTv~l~Ediv~~~i~~l~~~A~~~a~~--Rgki~~eDl~F~lR~D~~ 78 (111)
..+.-++-.++-....+++..|.+.|.. +.+|+.+||..++|+|..
T Consensus 44 ~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeE 91 (123)
T 2nqb_C 44 AGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 91 (123)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHH
Confidence 3344455555555555666666666643 445999999999999964
No 39
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=78.48 E-value=3 Score=25.66 Aligned_cols=39 Identities=8% Similarity=0.140 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhC
Q 033783 38 LVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKD 76 (111)
Q Consensus 38 l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D 76 (111)
.-+.+.---|..+|..|...|-+++. |+.+||.-++++=
T Consensus 31 ~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 31 RPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp SSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 33445556788999999999887664 9999999988763
No 40
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=77.95 E-value=6.2 Score=27.43 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCcHHHHHHHHhhChh
Q 033783 33 PETVALVEDIVVEYVTDLAHKAQDIGSK--GGKLSVEDFLYLIRKDLP 78 (111)
Q Consensus 33 ~eTv~l~Ediv~~~i~~l~~~A~~~a~~--Rgki~~eDl~F~lR~D~~ 78 (111)
..+.-++-.++-.+..+++..|.+.|.. +.+|+.+||..++|+|..
T Consensus 46 ~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeE 93 (129)
T 1tzy_A 46 AGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEE 93 (129)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHH
Confidence 3444455555555556666666666653 445999999999999964
No 41
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=76.89 E-value=6.3 Score=28.08 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=39.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHh
Q 033783 28 DPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIR 74 (111)
Q Consensus 28 ~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR 74 (111)
.-.=..+.+..+.+..-.|+++|...|..+|...++ |..+|+-.+.|
T Consensus 83 ~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 83 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 345567889999999999999999999999976565 88899887765
No 42
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=76.45 E-value=6.9 Score=27.36 Aligned_cols=45 Identities=9% Similarity=0.218 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 31 PLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 31 P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
-..++..+|..+|.+..-.|..+|..+|...++ |+..||-.++|-
T Consensus 52 ISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 98 (123)
T 2nqb_D 52 ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRL 98 (123)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHH
Confidence 468899999999999999999999999974444 999999999984
No 43
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=76.31 E-value=6.9 Score=27.46 Aligned_cols=45 Identities=9% Similarity=0.209 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 31 PLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 31 P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
-..++..+|..+|.+..-.|..+|..+|...++ |+..||-.++|-
T Consensus 55 ISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 101 (126)
T 1tzy_B 55 ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRL 101 (126)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 568899999999999999999999999975444 999999999984
No 44
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=75.83 E-value=7.1 Score=27.20 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCcHHHHHHHHhhChh
Q 033783 34 ETVALVEDIVVEYVTDLAHKAQDIGS--KGGKLSVEDFLYLIRKDLP 78 (111)
Q Consensus 34 eTv~l~Ediv~~~i~~l~~~A~~~a~--~Rgki~~eDl~F~lR~D~~ 78 (111)
.+.-++-.++-.+..+++..|.+.|. .+.+|+.+||.-++|+|..
T Consensus 47 ~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeE 93 (131)
T 1id3_C 47 GAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDE 93 (131)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHH
Confidence 33344444444444556666666554 3445999999999999964
No 45
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=75.33 E-value=3 Score=25.84 Aligned_cols=36 Identities=6% Similarity=0.040 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhC
Q 033783 41 DIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKD 76 (111)
Q Consensus 41 div~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D 76 (111)
.+.---|..+|..|...|-+++. |+.+||.-++++=
T Consensus 31 G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 31 SLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 33445678889999888877664 9999999999864
No 46
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=74.42 E-value=5.8 Score=28.79 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=38.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHh
Q 033783 29 PNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIR 74 (111)
Q Consensus 29 ~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR 74 (111)
-.=..+.+..|.+..-.|+++|...|..+|.-.++ |..+|+-.+.|
T Consensus 100 lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 100 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 34567889999999999999999999999975454 88999987765
No 47
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=74.39 E-value=11 Score=26.17 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc--CCCCcHHHHHHHHhhChh
Q 033783 38 LVEDIVVEYVTDLAHKAQDIGSK--GGKLSVEDFLYLIRKDLP 78 (111)
Q Consensus 38 l~Ediv~~~i~~l~~~A~~~a~~--Rgki~~eDl~F~lR~D~~ 78 (111)
++-.++--+..+++..|.+.|.. +.+|+.+||.-++|+|..
T Consensus 54 yLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeE 96 (128)
T 1f66_C 54 YSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 96 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHH
Confidence 44444444445566666665543 445999999999999964
No 48
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=74.37 E-value=3.1 Score=26.34 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 32 LPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 32 ~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
..+-+..-+.+.---|..+|.+|.-.|-+++. |+.+||.-++.+
T Consensus 35 l~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 35 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp CHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34444455556666788999999888877654 999999988865
No 49
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=73.86 E-value=9.9 Score=27.19 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCcHHHHHHHHhhChh
Q 033783 34 ETVALVEDIVVEYVTDLAHKAQDIGS--KGGKLSVEDFLYLIRKDLP 78 (111)
Q Consensus 34 eTv~l~Ediv~~~i~~l~~~A~~~a~--~Rgki~~eDl~F~lR~D~~ 78 (111)
.+.-++-.++-....+++..|.+.|. .+.+|+.+||..++|+|..
T Consensus 66 ~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeE 112 (149)
T 2f8n_K 66 GAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEE 112 (149)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHH
Confidence 33444444444445566666666664 3445999999999999964
No 50
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}
Probab=71.42 E-value=4.6 Score=28.71 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=33.5
Q ss_pred HHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033783 19 QHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDI 57 (111)
Q Consensus 19 ~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~ 57 (111)
..|||+..+..-|..|.|-.-=|.|+.-|.+|+..|...
T Consensus 2 ~~~~~~~~~~~~P~~e~Vvr~TE~ITk~IqeLl~AaQ~~ 40 (135)
T 2jx0_A 2 SHMLDGDPDPGLPSTEDVILKTEQVTKNIQELLRAAQEF 40 (135)
T ss_dssp ---CCSSCBSSCSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 369999999999999999999999999999999988754
No 51
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=62.63 E-value=16 Score=26.67 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhhh--cCCCCcHHHHHHHHhhChh
Q 033783 42 IVVEYVTDLAHKAQDIGS--KGGKLSVEDFLYLIRKDLP 78 (111)
Q Consensus 42 iv~~~i~~l~~~A~~~a~--~Rgki~~eDl~F~lR~D~~ 78 (111)
++-....+++..|.+.|. .+.+|+.+|+.-++|+|..
T Consensus 136 vLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~e 174 (192)
T 2jss_A 136 VLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDE 174 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHH
Confidence 333333444455555553 4566999999999999964
No 52
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=54.84 E-value=28 Score=23.41 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=26.7
Q ss_pred cCCCCcHHHHHHHHhhChhHHhHHHHHHH
Q 033783 60 KGGKLSVEDFLYLIRKDLPKLNRCTELLS 88 (111)
Q Consensus 60 ~Rgki~~eDl~F~lR~D~~Kl~Rl~~lL~ 88 (111)
++|.++..|..-+++=|+.|.+||.+++.
T Consensus 72 k~g~lkk~dA~~l~kID~~K~~rIydff~ 100 (108)
T 2cuj_A 72 KQGGLRLAQARALIKIDVNKTRKIYDFLI 100 (108)
T ss_dssp HSSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHhcccHHHHHHHHHHHH
Confidence 46789999999999999999999999986
No 53
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.42 E-value=8.9 Score=31.91 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhC---hhHHhHHHHHHHH
Q 033783 40 EDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKD---LPKLNRCTELLSM 89 (111)
Q Consensus 40 Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D---~~Kl~Rl~~lL~~ 89 (111)
+.+.--.|..+|.+|.-.|.++++ ++.+||.-++.+= .+|.+-...|+.|
T Consensus 412 ~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~ 466 (467)
T 4b4t_H 412 PNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRYMQY 466 (467)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHCC----------
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCcccchhHHHHHhh
Confidence 334445788999999888865554 8999999988642 3344444455555
No 54
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=48.34 E-value=46 Score=20.57 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=28.4
Q ss_pred hhhCCCCCCcHHHHHHHHHHHHHH---------HHHHHHHHHHhhhcCCCCcH
Q 033783 23 YGFGDDPNPLPETVALVEDIVVEY---------VTDLAHKAQDIGSKGGKLSV 66 (111)
Q Consensus 23 y~fGD~~~P~~eTv~l~Ediv~~~---------i~~l~~~A~~~a~~Rgki~~ 66 (111)
+||| .|.|-....|.+.+.++ =.+++..|++.|...|+.+.
T Consensus 11 ~g~g---~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~~~ 60 (83)
T 2i5u_A 11 NGFG---LMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANARNY 60 (83)
T ss_dssp TTSC---SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCCSH
T ss_pred hCCC---CCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCCCH
Confidence 3787 35555566677777766 67888899888865566543
No 55
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=48.21 E-value=53 Score=21.22 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=48.9
Q ss_pred hhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCCcHHHHHHHHhh
Q 033783 12 SFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKG---GKLSVEDFLYLIRK 75 (111)
Q Consensus 12 ~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~R---gki~~eDl~F~lR~ 75 (111)
+|...-|+.+|=..-+. .|.+..+.+|--+-..|+-+|+..|..+...+ |.|....|.=+.|+
T Consensus 16 ~f~k~~vKrl~~~~~~~-~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 16 AFPKAAIKRLIQSITGT-SVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp CCCHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 34455677777666654 57789999999999999999999999998754 45888888777664
No 56
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=42.96 E-value=47 Score=21.80 Aligned_cols=62 Identities=5% Similarity=0.214 Sum_probs=34.7
Q ss_pred hhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHhhChh
Q 033783 11 ESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLP 78 (111)
Q Consensus 11 ~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR~D~~ 78 (111)
+.....|+..+|-.+|....+.+-|-.-+++++. .++..+- ....|+|+.++|+-+++++|.
T Consensus 113 G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~D--~d~dG~I~~~EF~~~~~~~~~ 174 (183)
T 1dgu_A 113 GTLNREDLSRLVNCLTGEGEDTRLSASEMKQLID----NILEESD--IDRDGTINLSEFQHVISRSPD 174 (183)
T ss_dssp SEEEHHHHHHHHHHHHSSSCCCHHHHHHHHHHHH----HHHHHHC--TTSSSEEEHHHHHHHHCSSCH
T ss_pred CcCCHHHHHHHHHHHhcccccCCCCHHHHHHHHH----HHHHHhC--CCCCCeEcHHHHHHHHHhChH
Confidence 4455668888887777533222223222222221 2222221 124678999999999998874
No 57
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J 4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Probab=42.91 E-value=7.8 Score=26.08 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHhhChhHHhHHHHHHHHHHHHHHHHhhcCcchhhh
Q 033783 63 KLSVEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAFEVDEEKL 107 (111)
Q Consensus 63 ki~~eDl~F~lR~D~~Kl~Rl~~lL~~k~~ik~ark~fd~d~~~~ 107 (111)
.+++.||-.++++-.. -.+||.=+--|..|+|+|+++-..+
T Consensus 35 alsiqDIElLmKnTEI----Wd~Ll~gkISIeEAKK~Fedn~~~y 75 (104)
T 4ayb_Q 35 KLSIQDIELLMKNTEI----WDNLLNGKISVDEAKRLFEDNYKDY 75 (104)
T ss_dssp CCCHHHHHHHHHHHHH----HHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhchHH----HHHHHcCcccHHHHHHHHHHHHHHH
Confidence 3677777777665432 2234444444666666666554433
No 58
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.68 E-value=24 Score=28.67 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 40 EDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 40 Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
+.+.--.|..+|.+|.-.|-++++ |+.+||.-++++
T Consensus 351 ~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 351 NGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 334455788999999888876665 899999998864
No 59
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=39.43 E-value=78 Score=21.65 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCC-cHHHHHHHHhh
Q 033783 32 LPETVALVEDIVVEYVTDLAHKAQDIGS----KGGKL-SVEDFLYLIRK 75 (111)
Q Consensus 32 ~~eTv~l~Ediv~~~i~~l~~~A~~~a~----~Rgki-~~eDl~F~lR~ 75 (111)
..|+..-+.+-....|...+.++++-=. .-|+| +.|||.|+.|+
T Consensus 11 ~s~~~~~~k~~Fr~eis~~Vv~~L~pYRk~~Ck~GRITs~EDFK~LaRK 59 (112)
T 2a7o_A 11 SSELAKKSKEVFRKEMSQFIVQCLNPYRKPDCKVGRITTTEDFKHLARK 59 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTCSSSBCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccCccccCccccHHHHHHHHHH
Confidence 4455555666666667777776665322 23675 59999999985
No 60
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=37.02 E-value=42 Score=22.08 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=34.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------CCCCcHHHHH
Q 033783 26 GDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSK---------GGKLSVEDFL 70 (111)
Q Consensus 26 GD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~---------Rgki~~eDl~ 70 (111)
++...-..+++.++.+++--|+.+-+.+|.+-... .|-+.++||-
T Consensus 17 ~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLE 70 (88)
T 3v9r_B 17 GNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLE 70 (88)
T ss_dssp SSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHH
T ss_pred CCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHH
Confidence 66677889999999999999999999999765432 1237778864
No 61
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=36.96 E-value=29 Score=22.38 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=26.6
Q ss_pred cCCCCcHHHHHHHHhhChhHHhHHHHHHHH
Q 033783 60 KGGKLSVEDFLYLIRKDLPKLNRCTELLSM 89 (111)
Q Consensus 60 ~Rgki~~eDl~F~lR~D~~Kl~Rl~~lL~~ 89 (111)
++|.++..|..-+++=|+.|.+||.+++.-
T Consensus 54 ~~g~l~k~da~~~~kiD~~K~~~iydf~~~ 83 (90)
T 2aqe_A 54 KQGGLRLAQARALIKIDVNKTRKIYDFLIR 83 (90)
T ss_dssp HHSCCCHHHHHTTSSSSSHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHcccHHHHHHHHHHHHH
Confidence 457799999999999999999999999863
No 62
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.70 E-value=29 Score=28.24 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 42 IVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 42 iv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
+.--.|..+|.+|.-.|-++++ |+.+||.-++++
T Consensus 386 ~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 386 FNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4445788999999888876654 999999999874
No 63
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=36.29 E-value=84 Score=20.11 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=37.3
Q ss_pred hhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHhhChhHHhHHHHHHHHH
Q 033783 11 ESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLPKLNRCTELLSMQ 90 (111)
Q Consensus 11 ~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR~D~~Kl~Rl~~lL~~k 90 (111)
+.....|+..+|-..|.. +.++ .+..++..+ ...|+|+.++|+-++++.
T Consensus 85 G~i~~~el~~~l~~~g~~--~~~~-----------~~~~~~~~~----d~dg~i~~~eF~~~~~~~-------------- 133 (165)
T 1k94_A 85 GTVEHHELRQAIGLMGYR--LSPQ-----------TLTTIVKRY----SKNGRIFFDDYVACCVKL-------------- 133 (165)
T ss_dssp SBCCHHHHHHHHHHTTCC--CCHH-----------HHHHHHHHH----CBTTBCBHHHHHHHHHHH--------------
T ss_pred ceECHHHHHHHHHHhCCC--CCHH-----------HHHHHHHHh----CCCCeEcHHHHHHHHHHH--------------
Confidence 445667888888887753 2221 122223333 356889999998777652
Q ss_pred HHHHHHHhhcCcch
Q 033783 91 EELKQARKAFEVDE 104 (111)
Q Consensus 91 ~~ik~ark~fd~d~ 104 (111)
..+..+=+.||.|.
T Consensus 134 ~~~~~~F~~~D~d~ 147 (165)
T 1k94_A 134 RALTDFFRKRDHLQ 147 (165)
T ss_dssp HHHHHHHHTTCTTC
T ss_pred HHHHHHHHHhCCCC
Confidence 34555555666654
No 64
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.67 E-value=31 Score=28.42 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 39 VEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 39 ~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
-+.+.--.|..+|.+|.-.|.++++ |+.+||.-++++
T Consensus 384 T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 384 KDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 3344556788999999888876665 899999888753
No 65
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=35.10 E-value=87 Score=19.93 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=25.2
Q ss_pred CCC-CcHHHHHHHHhhChhHHhHHHHHHH
Q 033783 61 GGK-LSVEDFLYLIRKDLPKLNRCTELLS 88 (111)
Q Consensus 61 Rgk-i~~eDl~F~lR~D~~Kl~Rl~~lL~ 88 (111)
+|. ++.+|..-+++=|+.|.+||.+++.
T Consensus 55 ~g~~lkk~da~~~~kiD~~K~~~iydf~~ 83 (88)
T 2elj_A 55 TGGNLSKSACRELLNIDPIKANRIYDFFQ 83 (88)
T ss_dssp HSSCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHcccHHHHHHHHHHHH
Confidence 355 9999999999999999999999986
No 66
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=33.07 E-value=1.6e+02 Score=22.28 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHh------hhcCCCCcHHHHHHHHhhChhHHhHHHHHHHHHH
Q 033783 31 PLPETVALVEDIVVEYVTD-LAHKAQDI------GSKGGKLSVEDFLYLIRKDLPKLNRCTELLSMQE 91 (111)
Q Consensus 31 P~~eTv~l~Ediv~~~i~~-l~~~A~~~------a~~Rgki~~eDl~F~lR~D~~Kl~Rl~~lL~~k~ 91 (111)
|..++..++.+++.-|+.- .+..|.++ +...|.+++++|.=.+.-|+..+.|+-.+|..-.
T Consensus 4 ~e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~g 71 (353)
T 4a6d_A 4 SEDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLK 71 (353)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCC
Confidence 5567788888888888643 45555544 2234679999999999999999999888776543
No 67
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=32.91 E-value=71 Score=18.24 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=33.5
Q ss_pred hhhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHhhChhH
Q 033783 10 EESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLPK 79 (111)
Q Consensus 10 ~~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR~D~~K 79 (111)
.+.....|+..+|-..| .+.++. +..++..+ . ....|.|+.++|+-++...+.-
T Consensus 25 ~G~i~~~el~~~l~~~g---~~~~~~-----------~~~~~~~~-D-~~~dg~i~~~eF~~~~~~~~~~ 78 (86)
T 2opo_A 25 DGKISSSELGDALKTLG---SVTPDE-----------VRRMMAEI-D-TDGDGFISFDEFTDFARANRGL 78 (86)
T ss_dssp SSEEEHHHHHHHHHTTT---TCCHHH-----------HHHHHHHH-C-TTCSSEECHHHHHHHHHHCTTT
T ss_pred CCCcCHHHHHHHHHHcC---CCCHHH-----------HHHHHHHh-C-CCCCCcCcHHHHHHHHHHCccH
Confidence 34566779999998888 232222 12222222 1 1246789999999999887643
No 68
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.85 E-value=31 Score=28.09 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhC
Q 033783 40 EDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKD 76 (111)
Q Consensus 40 Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D 76 (111)
+.+.--.|..+|.+|.-.|.++|+ |+.+||.-++.+=
T Consensus 384 ~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 384 DEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 344455788999999888876654 9999999988753
No 69
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=32.43 E-value=36 Score=19.87 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=17.3
Q ss_pred HHHHHHHHhhChhHHhHHHH
Q 033783 66 VEDFLYLIRKDLPKLNRCTE 85 (111)
Q Consensus 66 ~eDl~F~lR~D~~Kl~Rl~~ 85 (111)
.+-|+|+|++|+.-++.|.+
T Consensus 15 ~qal~hLiknD~~Fl~~iHe 34 (46)
T 2wx4_A 15 VQAFTYLIQNDKEFANKLHK 34 (46)
T ss_dssp HHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHH
Confidence 46789999999999988875
No 70
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=32.35 E-value=27 Score=22.15 Aligned_cols=54 Identities=9% Similarity=0.172 Sum_probs=33.2
Q ss_pred hhhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHhhChhH
Q 033783 10 EESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLPK 79 (111)
Q Consensus 10 ~~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR~D~~K 79 (111)
.+.....|+..+|-.+|..-. .. .+..++..+- . ..|+|+.++|+-+|++.|.+
T Consensus 99 ~G~I~~~el~~~l~~~g~~~~-~~------------~~~~~~~~~d-~--~dg~I~~~eF~~~~~~~~~~ 152 (153)
T 2ovk_B 99 QGFIPEDYLKDLLENMGDNFS-KE------------EIKNVWKDAP-L--KNKQFNYNKMVDIKGKAEDE 152 (153)
T ss_dssp SSCCCHHHHHHHHHHSSSCCC-HH------------HHHHHHHHCC-E--ETTEECHHHHHHHHHCSCC-
T ss_pred CCeEcHHHHHHHHHHcCCCCC-HH------------HHHHHHHHcC-C--CCCEEeHHHHHHHHhcCccC
Confidence 345566788888888875321 11 1222333322 2 56789999999999987753
No 71
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=32.20 E-value=78 Score=22.50 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 38 LVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 38 l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
..+......|..+|..|...|..+|+ |+.+|+.-+++.
T Consensus 218 ~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 218 MTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 33334455788899999988876654 999999888764
No 72
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=31.86 E-value=86 Score=20.28 Aligned_cols=16 Identities=6% Similarity=0.430 Sum_probs=12.1
Q ss_pred cCCCCcHHHHHHHHhh
Q 033783 60 KGGKLSVEDFLYLIRK 75 (111)
Q Consensus 60 ~Rgki~~eDl~F~lR~ 75 (111)
..|.|+.++|.-+++.
T Consensus 122 ~~G~Is~~El~~~l~~ 137 (191)
T 1uhk_A 122 QNGAITLDEWKAYTKA 137 (191)
T ss_dssp CSSEECHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHH
Confidence 3467999999888764
No 73
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=31.27 E-value=50 Score=23.34 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 43 VVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 43 v~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
....|..+|.+|...|..+|+ |+.+||.-+++.
T Consensus 217 ~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 217 SGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 455788889999888876653 999999877653
No 74
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=29.39 E-value=96 Score=20.84 Aligned_cols=50 Identities=16% Similarity=0.356 Sum_probs=32.6
Q ss_pred hhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHhhC
Q 033783 11 ESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKD 76 (111)
Q Consensus 11 ~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR~D 76 (111)
+.....|++++|-.+|+.-. .. .+.+|+..+- ..-|+|+.++|+-+|++.
T Consensus 99 G~I~~~el~~~l~~~g~~~~-~~------------ei~~l~~~~d---d~dG~I~~~EF~~~m~k~ 148 (176)
T 2lhi_A 99 GLISAAELKHVLTSIGEKLT-DA------------EVDDMLREVS---DGSGEINIQQFAALLSKG 148 (176)
T ss_dssp SSBCHHHHHHHHHTTTCCCC-HH------------HHHHHHHHHH---TTSSCBCTTHHHHHHTCC
T ss_pred CcCcHHHHHHHHHHcCcccc-hH------------HHHHHHHhhc---CCCCeEeHHHHHHHHHhc
Confidence 34556788888888886422 11 1233444442 356899999999999864
No 75
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=29.21 E-value=69 Score=22.21 Aligned_cols=19 Identities=16% Similarity=0.473 Sum_probs=16.4
Q ss_pred cCCCCcHHHHHHHHhhChh
Q 033783 60 KGGKLSVEDFLYLIRKDLP 78 (111)
Q Consensus 60 ~Rgki~~eDl~F~lR~D~~ 78 (111)
..|+|+.++|+-+++++|.
T Consensus 187 ~dG~Is~~EF~~~~~~~p~ 205 (214)
T 2l4h_A 187 RDGTINLSEFQHVISRSPD 205 (214)
T ss_dssp CCSSBCSHHHHHHHHTCHH
T ss_pred CCCcCCHHHHHHHHHhChH
Confidence 4678999999999998874
No 76
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=29.10 E-value=1.1e+02 Score=19.36 Aligned_cols=53 Identities=9% Similarity=0.284 Sum_probs=29.0
Q ss_pred hhhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHhhCh
Q 033783 10 EESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDL 77 (111)
Q Consensus 10 ~~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR~D~ 77 (111)
.+.....|+..++-.+|.. -+..+ +..++..+- ....|.|+.++|+-++++.|
T Consensus 115 ~G~i~~~el~~~l~~~g~~-~~~~~------------~~~~~~~~D--~~~dg~i~~~eF~~~~~~~~ 167 (169)
T 3qrx_A 115 SGTITIKDLRRVAKELGEN-LTEEE------------LQEMIAEAD--RNDDNEIDEDEFIRIMKKTS 167 (169)
T ss_dssp SSSBCHHHHHHHHHHTTCC-CCHHH------------HHHHHHHHC--CSSSSCBCHHHHHHHHC---
T ss_pred CCcCCHHHHHHHHHHcCCC-CCHHH------------HHHHHHHhC--CCCCCCEeHHHHHHHHHhcc
Confidence 3445566777777777742 12111 222222221 13468899999999999876
No 77
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=28.40 E-value=1.2e+02 Score=19.62 Aligned_cols=15 Identities=7% Similarity=0.313 Sum_probs=11.0
Q ss_pred CCCCcHHHHHHHHhh
Q 033783 61 GGKLSVEDFLYLIRK 75 (111)
Q Consensus 61 Rgki~~eDl~F~lR~ 75 (111)
.|.|+.++|.-+++.
T Consensus 127 ~G~I~~~El~~~l~~ 141 (195)
T 1qv0_A 127 SGTITLDEWKAYGKI 141 (195)
T ss_dssp -CEECHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHH
Confidence 467888888888764
No 78
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=28.24 E-value=59 Score=21.54 Aligned_cols=34 Identities=12% Similarity=0.069 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhChh
Q 033783 45 EYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLP 78 (111)
Q Consensus 45 ~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D~~ 78 (111)
..+..++..|...|...|. |++|.|+..|=.++.
T Consensus 84 ~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~ 119 (145)
T 3fes_A 84 PRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGE 119 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCC
Confidence 3445566777777876664 999999999876653
No 79
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=28.17 E-value=52 Score=19.57 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=17.1
Q ss_pred HHHHHHHHhhChhHHhHHHH
Q 033783 66 VEDFLYLIRKDLPKLNRCTE 85 (111)
Q Consensus 66 ~eDl~F~lR~D~~Kl~Rl~~ 85 (111)
.+-|+++|++|+.-+..|.+
T Consensus 17 ~qaLihLIqnD~~Fl~~IHe 36 (51)
T 2wx3_A 17 QDTLIHLIKNDSSFLSTLHE 36 (51)
T ss_dssp HHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHH
Confidence 36689999999999998876
No 80
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=27.83 E-value=1e+02 Score=20.53 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=30.3
Q ss_pred hhhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHhh
Q 033783 10 EESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRK 75 (111)
Q Consensus 10 ~~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR~ 75 (111)
.+.....|+..++-..|... .++ .+..++..+ ...|+|+.++|+-++++
T Consensus 117 ~G~I~~~el~~~l~~~g~~~--~~~-----------~~~~l~~~~----d~dg~i~~~eF~~~~~~ 165 (198)
T 1juo_A 117 SGTVDPQELQKALTTMGFRL--SPQ-----------AVNSIAKRY----STNGKITFDDYIACCVK 165 (198)
T ss_dssp CSEECHHHHHHHHHHTTCCC--CHH-----------HHHHHHHHT----CSSSSEEHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHhCCCC--CHH-----------HHHHHHHHh----CCCCeEcHHHHHHHHHH
Confidence 34556778888888877532 111 122233333 45688999999988865
No 81
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=26.60 E-value=89 Score=17.40 Aligned_cols=53 Identities=9% Similarity=0.224 Sum_probs=33.2
Q ss_pred hhhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHhhChh
Q 033783 10 EESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLP 78 (111)
Q Consensus 10 ~~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR~D~~ 78 (111)
.+.....|+..+|-..| .+.++. +..++..+ . ....|+|+.++|+-++++.+.
T Consensus 17 ~G~i~~~el~~~l~~~g---~~~~~~-----------~~~~~~~~-D-~~~dg~i~~~ef~~~~~~~~~ 69 (78)
T 1k9u_A 17 DGKISLSELTDALRTLG---STSADE-----------VQRMMAEI-D-TDGDGFIDFNEFISFCNANPG 69 (78)
T ss_dssp SSEECHHHHHHHHHHHH---TCCHHH-----------HHHHHHHH-C-TTCSSSEEHHHHHHHHHHCHH
T ss_pred CCcCcHHHHHHHHHHhC---CCCHHH-----------HHHHHHHh-C-CCCCCeEcHHHHHHHHHHCch
Confidence 34566789999998888 233222 12222222 1 134688999999999888754
No 82
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=26.28 E-value=73 Score=19.82 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=29.7
Q ss_pred hhhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHh
Q 033783 10 EESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIR 74 (111)
Q Consensus 10 ~~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR 74 (111)
.+.....|+..++-.+|..- +..+ +..++..+ ...|+|+.++|+-+|+
T Consensus 98 ~G~I~~~el~~~l~~~g~~~-~~~~------------~~~~~~~~----d~dg~i~~~eF~~~l~ 145 (146)
T 2qac_A 98 TGYLTKSQMKNILTTWGDAL-TDQE------------AIDALNAF----SSEDNIDYKLFCEDIL 145 (146)
T ss_dssp SSEEEHHHHHHHHHHSSSCC-CHHH------------HHHHHHHH----CSSSEEEHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCC-CHHH------------HHHHHHHc----CCCCcCcHHHHHHHHh
Confidence 34556778888888888532 2111 22223333 4568899999987775
No 83
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.03 E-value=57 Score=26.39 Aligned_cols=37 Identities=5% Similarity=0.036 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 39 VEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 39 ~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
-+.+.--.|..+|.+|.-.|-++++ |+.+||.-++.+
T Consensus 375 t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 375 NDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 3444455789999999888877665 899999887754
No 84
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=25.86 E-value=1.3e+02 Score=22.64 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=49.2
Q ss_pred hhHHHHHHhhhhhCCCCCCcHHH----------HHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHhhChhHHhH
Q 033783 13 FKKIVIQHMMYGFGDDPNPLPET----------VALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLPKLNR 82 (111)
Q Consensus 13 ~~~~EI~~mMy~fGD~~~P~~eT----------v~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR~D~~Kl~R 82 (111)
-||...++|+...|=. |+.-. -++.-++ -.+|.++|..... ...|-|+++|+.-.+.+.+.+..
T Consensus 39 ~fR~~F~~mc~siGVD--Plas~kg~ws~~lG~gdfy~eL-avqIvEvC~~tr~--~nGGli~L~el~~~~~r~Rg~~~- 112 (234)
T 3cuq_A 39 EFRVQFQDMCATIGVD--PLASGKGFWSEMLGVGDFYYEL-GVQIIEVCLALKH--RNGGLITLEELHQQVLKGRGKFA- 112 (234)
T ss_dssp HHHHHHHHHHHHHTCC--TTSCTTSHHHHHHCHHHHHHHH-HHHHHHHHHHHHH--HHSSEEEHHHHHHHHHHTTTTCC-
T ss_pred HHHHHHHHHHHHcCCC--cccCCcchhhhhcCcchHHHHH-HHHHHHHHHHHHH--hcCCeeEHHHHHHHHHHhcCCcc-
Confidence 4788999999999966 55422 1222222 2356666655432 23456999999999887665422
Q ss_pred HHHHHHHHHHHHHHHh
Q 033783 83 CTELLSMQEELKQARK 98 (111)
Q Consensus 83 l~~lL~~k~~ik~ark 98 (111)
+.++-.|.++..++
T Consensus 113 --~~IS~dDi~rAik~ 126 (234)
T 3cuq_A 113 --QDVSQDDLIRAIKK 126 (234)
T ss_dssp --SSCCHHHHHHHHHH
T ss_pred --CccCHHHHHHHHHH
Confidence 46676676666554
No 85
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=25.70 E-value=1.3e+02 Score=22.74 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=46.8
Q ss_pred hhHHHHHHhhhhhCCCCCCcH-H--------HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHhhChhHHhHH
Q 033783 13 FKKIVIQHMMYGFGDDPNPLP-E--------TVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLPKLNRC 83 (111)
Q Consensus 13 ~~~~EI~~mMy~fGD~~~P~~-e--------Tv~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR~D~~Kl~Rl 83 (111)
-||...++|+...|=. |+. . .-++.-++ -.+|.++|..... ...|-|+++|+.-.+.+.
T Consensus 59 ~fR~~F~~mc~siGVD--PLa~s~kg~~~lg~gdfy~eL-avqIvEvC~~tr~--~nGGli~l~el~~~~~r~------- 126 (233)
T 1u5t_A 59 EFRSKFMHMCSSIGID--PLSLFDRDKHLFTVNDFYYEV-CLKVIEICRQTKD--MNGGVISFQELEKVHFRK------- 126 (233)
T ss_dssp HHHHHHHHHHHHHTCC--HHHHTTSSGGGTTHHHHHHHH-HHHHHHHHHHHTT--TSSSCEEHHHHHHTTTTT-------
T ss_pred HHHHHHHHHHHHcCCC--CCccCCccccccCcchHHHHH-HHHHHHHHHHHHH--hcCCeeEHHHHHHHHHhh-------
Confidence 4888999999999965 666 1 12222222 2355566554432 234569999999988776
Q ss_pred HHHHHHHHHHHHHHh
Q 033783 84 TELLSMQEELKQARK 98 (111)
Q Consensus 84 ~~lL~~k~~ik~ark 98 (111)
+.++-.|.++..++
T Consensus 127 -~~IS~dDi~rAik~ 140 (233)
T 1u5t_A 127 -LNVGLDDLEKSIDM 140 (233)
T ss_dssp -TTCCHHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHH
Confidence 56676666665554
No 86
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=25.02 E-value=2.3e+02 Score=21.56 Aligned_cols=58 Identities=9% Similarity=0.095 Sum_probs=43.9
Q ss_pred HHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHh
Q 033783 17 VIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIR 74 (111)
Q Consensus 17 EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR 74 (111)
||.+-.-..|..-.=..+++..+.+..-.|+..|...+.-+|.-.++ |...|+-.+.|
T Consensus 23 EIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarr 82 (235)
T 2l5a_A 23 EVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARR 82 (235)
T ss_dssp HHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHT
T ss_pred HHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHH
Confidence 55444333333455678889999999999999999999988876665 67789888866
No 87
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=24.65 E-value=1.2e+02 Score=19.45 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=29.8
Q ss_pred hhhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHhh
Q 033783 10 EESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRK 75 (111)
Q Consensus 10 ~~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR~ 75 (111)
.+.....|+..+|-..|.. +.++. + ..++..+ ...|+|+.++|+-+++.
T Consensus 86 ~G~i~~~el~~~l~~~g~~--~~~~~---~--------~~~~~~~----d~dg~i~~~eF~~~~~~ 134 (167)
T 1gjy_A 86 SGTVDPQELQKALTTMGFR--LNPQT---V--------NSIAKRY----STSGKITFDDYIACCVK 134 (167)
T ss_dssp CSEECHHHHHHHHHTTTCC--CCHHH---H--------HHHHHHT----CBTTBEEHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCC--CCHHH---H--------HHHHHHh----CcCCcCcHHHHHHHHHH
Confidence 3455667888888887753 22221 2 2222222 35688999999887765
No 88
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=24.06 E-value=91 Score=20.53 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhcCCC--CcHHHHHHHHhhCh
Q 033783 48 TDLAHKAQDIGSKGGK--LSVEDFLYLIRKDL 77 (111)
Q Consensus 48 ~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D~ 77 (111)
..++..|...|...|. |++|.|+..|=.++
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 4455567777766664 99999999986654
No 89
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=23.55 E-value=31 Score=21.47 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=30.6
Q ss_pred hhhhHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHhhChh
Q 033783 11 ESFKKIVIQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLP 78 (111)
Q Consensus 11 ~~~~~~EI~~mMy~fGD~~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR~D~~ 78 (111)
+.....|+..+|-.+|... +..+ +..++..+ . ....|+|+.++|+-+++++|+
T Consensus 91 G~I~~~El~~~l~~~g~~~-~~~~------------~~~~~~~~-D-~d~dg~i~~~eF~~~~~~~~k 143 (143)
T 3j04_B 91 GFIHEDHLRELLTTMGDRF-TDEE------------VDEMYREA-P-IDKKGNFNYVEFTRILKHGAK 143 (143)
T ss_dssp CCCCTTTHHHHHHTSSSCC-CHHH------------HHHHHHHT-T-CCSSSCCCSTHHHHHHHSSCC
T ss_pred CeEcHHHHHHHHHHcCCCC-CHHH------------HHHHHHHc-C-CCCCCcCcHHHHHHHHhccCC
Confidence 3445557777777777532 1111 12222222 1 124678999999999988763
No 90
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=23.41 E-value=96 Score=20.00 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhChh
Q 033783 45 EYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLP 78 (111)
Q Consensus 45 ~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D~~ 78 (111)
....+.+..|...|..+|- |.+|.|+..|=+++.
T Consensus 4 ~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~ 39 (143)
T 1k6k_A 4 QELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS 39 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCch
Confidence 4566778888888887764 999999999977764
No 91
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=23.25 E-value=1.3e+02 Score=19.39 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=19.4
Q ss_pred cCCCCcHHHHHHHHhhChhHHhHHH
Q 033783 60 KGGKLSVEDFLYLIRKDLPKLNRCT 84 (111)
Q Consensus 60 ~Rgki~~eDl~F~lR~D~~Kl~Rl~ 84 (111)
..|.|+.++|.-+++++|.-+.-+.
T Consensus 153 ~dG~i~~~Ef~~~~~~~~~~~~~l~ 177 (183)
T 1s6c_A 153 KDGIVTLDEFLESXQEDDNIMRSLQ 177 (183)
T ss_dssp CSSEECHHHHHHHTTSCCHHHHHHH
T ss_pred CCCcEeHHHHHHHHhcChHHHHHHH
Confidence 4578999999999999886544443
No 92
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=22.92 E-value=74 Score=22.39 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhhcCC--CCcHHHHHHHH
Q 033783 45 EYVTDLAHKAQDIGSKGG--KLSVEDFLYLI 73 (111)
Q Consensus 45 ~~i~~l~~~A~~~a~~Rg--ki~~eDl~F~l 73 (111)
..|..+|.+|...|..+| .|+.+||.-++
T Consensus 223 ~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 223 ADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 567888998888877655 49999987654
No 93
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=22.05 E-value=47 Score=21.28 Aligned_cols=61 Identities=8% Similarity=0.181 Sum_probs=34.9
Q ss_pred hhhhhHHHHHHhhhhhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHhhC
Q 033783 10 EESFKKIVIQHMMYGFGDD--PNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKD 76 (111)
Q Consensus 10 ~~~~~~~EI~~mMy~fGD~--~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR~D 76 (111)
.+.....|+..++-.+|.. ..|..+. ++.+++..+...++..+- ..|.|+.++|+-++..-
T Consensus 20 ~G~i~~~El~~~l~~~~~~~g~~~~~~~--~~~~~~~~~~~~l~~~~D----~~g~i~~~EF~~~~~~~ 82 (174)
T 1q80_A 20 DGAITRMDFESMAERFAKESEMKAEHAK--VLMDSLTGVWDNFLTAVA----GGKGIDETTFINSMKEM 82 (174)
T ss_dssp SSEESHHHHHHHHHHHHHHSSCCTTHHH--HHHHHHHHHHHHTGGGTT----TTSCEEHHHHHHHHHHH
T ss_pred CCcEeHHHHHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHHHHHHhcC----CCCeEcHHHHHHHHHHH
Confidence 4556677888888877731 1233322 144444444444433322 56789999998776643
No 94
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=22.03 E-value=1.3e+02 Score=19.08 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=37.1
Q ss_pred hhhhhHHHHHHhhhhhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcHHHHHHHHhh
Q 033783 10 EESFKKIVIQHMMYGFGDD--PNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRK 75 (111)
Q Consensus 10 ~~~~~~~EI~~mMy~fGD~--~~P~~eTv~l~Ediv~~~i~~l~~~A~~~a~~Rgki~~eDl~F~lR~ 75 (111)
.+.....|+..+|-.+|.. ..|..+.+.-+.+.+..+...+...+- ...-|+|+.++|+-+++.
T Consensus 23 dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D--~d~dG~I~~~Ef~~~~~~ 88 (185)
T 2sas_A 23 DGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRAD--INKDDVVSWEEYLAMWEK 88 (185)
T ss_dssp SSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHC--TTCSSCEEHHHHHHHHHH
T ss_pred CCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCCCCeEcHHHHHHHHHH
Confidence 4455567777777766621 245555555554444444444333321 124678999999887764
No 95
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=21.27 E-value=1.3e+02 Score=19.45 Aligned_cols=33 Identities=6% Similarity=-0.024 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhCh
Q 033783 45 EYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDL 77 (111)
Q Consensus 45 ~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D~ 77 (111)
+.....+..|...|..+|- |.+|.|+..|=+++
T Consensus 8 ~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 8 NKFQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 4556778888888887765 99999999987665
No 96
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=20.90 E-value=43 Score=23.42 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhh
Q 033783 44 VEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 75 (111)
Q Consensus 44 ~~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~ 75 (111)
-..|..+|..|...|..+|. |+.+||.-++++
T Consensus 215 ~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 215 GADIANICNEAALHAAREGHTSVHTLNFEYAVER 248 (262)
T ss_dssp HHHHHHHHHHHHTC--------CCBCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34677888888887765543 888998877764
No 97
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=20.67 E-value=87 Score=20.16 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=23.5
Q ss_pred cCCcchhhhhHHHHHHhhhhhCC-------CCCCcHHHHHHHHHH
Q 033783 5 HLSASEESFKKIVIQHMMYGFGD-------DPNPLPETVALVEDI 42 (111)
Q Consensus 5 ~~~~~~~~~~~~EI~~mMy~fGD-------~~~P~~eTv~l~Edi 42 (111)
..|+..+..+.++|...++|-=+ -=+|.++++.-++++
T Consensus 18 ~a~~~~Cp~l~~~v~~fl~~S~~~Y~~~L~~y~~~~~a~~A~~~l 62 (96)
T 1utr_A 18 SASSDICPGFLQVLEALLLGSESNYEAALKPFNPASDLQNAGTQL 62 (96)
T ss_dssp -----CCSTTHHHHHHHTTCCSSHHHHHHGGGCCCHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhcCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 34566899999999999997111 026777777776654
No 98
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=20.25 E-value=1.1e+02 Score=19.88 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhhcCCC--CcHHHHHHHHhhCh
Q 033783 45 EYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDL 77 (111)
Q Consensus 45 ~~i~~l~~~A~~~a~~Rgk--i~~eDl~F~lR~D~ 77 (111)
+...+.+..|...|..+|- |.+|.|+..|=+++
T Consensus 8 ~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 8 ERAQKVLALAQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 4556778888888887775 99999999886554
Done!