BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033791
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMT|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At1g77540
pdb|2Q44|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At1g77540
Length = 103
Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/103 (74%), Positives = 87/103 (84%)
Query: 9 SEKEIPKIVWNESKRRFETEDKEAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRA 68
S E PKIVWNE KRRFETED EA++EY +R NGKVMDLVHTYVPS KRGLGLASHLC A
Sbjct: 1 SATEPPKIVWNEGKRRFETEDHEAFIEYKMRNNGKVMDLVHTYVPSFKRGLGLASHLCVA 60
Query: 69 AFNHAKSHSMSIIPTCSYVSDTYLPRNPTWNSIIYSEDPRSII 111
AF HA SHS+SIIP+CSYVSDT+LPRNP+W +I+SE +S I
Sbjct: 61 AFEHASSHSISIIPSCSYVSDTFLPRNPSWKPLIHSEVFKSSI 103
>pdb|2EVN|A Chain A, Nmr Solution Structures Of At1g77540
pdb|2IL4|A Chain A, Crystal Structure Of At1g77540-Coenzyme A Complex
pdb|2Q4Y|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g77540- Coenzyme A Complex
Length = 103
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/100 (76%), Positives = 86/100 (86%)
Query: 12 EIPKIVWNESKRRFETEDKEAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFN 71
E PKIVWNE KRRFETED EA++EY +R NGKVMDLVHTYVPS KRGLGLASHLC AAF
Sbjct: 4 EPPKIVWNEGKRRFETEDHEAFIEYKMRNNGKVMDLVHTYVPSFKRGLGLASHLCVAAFE 63
Query: 72 HAKSHSMSIIPTCSYVSDTYLPRNPTWNSIIYSEDPRSII 111
HA SHS+SIIP+CSYVSDT+LPRNP+W +I+SE +S I
Sbjct: 64 HASSHSISIIPSCSYVSDTFLPRNPSWKPLIHSEVFKSSI 103
>pdb|1R57|A Chain A, Nmr Solution Structure Of A Gcn5-Like Putative N-
Acetyltransferase From Staphylococcus Aureus. Northeast
Structural Genomics Consortium Target Zr31
pdb|2H5M|A Chain A, Nmr Solution Structure Of A Gcn5-Like Putative
N-Acetyltransferase From Staphylococcus Aureus
Complexed With Acetyl-Coa. Northeast Structural
Genomics Consortium Target Zr31
Length = 102
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 20 ESKRRFETEDKE----AYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKS 75
+ + +F D E A + Y +N ++ ++ HT V G G+ L +A HA+
Sbjct: 8 QGENKFYIGDDENNALAEITYRFVDNNEI-NIDHTGVSDELGGQGVGKKLLKAVVEHARE 66
Query: 76 HSMSIIPTCSY 86
+++ II +CS+
Sbjct: 67 NNLKIIASCSF 77
>pdb|4HPF|A Chain A, Structure Of The Human Slo3 Gating Ring
pdb|4HPF|B Chain B, Structure Of The Human Slo3 Gating Ring
Length = 722
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 32 AYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDT- 90
AY ++ K DL V S++ L +A+ LC + S+ M ++ +Y S T
Sbjct: 57 AYTTFISGSAMKWEDLRRVAVESAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDSTTR 116
Query: 91 ------------YLPRNPTWN 99
YLP+ P+WN
Sbjct: 117 IIIQILQSHNKVYLPKIPSWN 137
>pdb|1SMP|A Chain A, Crystal Structure Of A Complex Between Serratia Marcescens
Metallo-Protease And An Inhibitor From Erwinia
Chrysanthemi
Length = 471
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 67 RAAFNHAKSHSMSIIPTCSYVSDTYLPRNPTWNSIIYSEDPR 108
R F H H++ + Y + NPT+N + Y+ED R
Sbjct: 171 RQTFTHEIGHALGLSHPGDYNAGE---GNPTYNDVTYAEDTR 209
>pdb|1PDJ|D Chain D, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1PDJ|E Chain E, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1PDJ|F Chain F, Fitting Of Gp27 Into Cryoem Reconstruction Of
Bacteriophage T4 Baseplate
pdb|1WTH|D Chain D, Crystal Structure Of Gp5-S351l Mutant And Gp27 Complex
pdb|2Z6B|D Chain D, Crystal Structure Analysis Of (Gp27-Gp5)3 Conjugated With
Fe(Iii) Protoporphyrin
Length = 391
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 15 KIVWNESKRRFETEDKEAYVEYVVRENGKVMDLVHTYVPSSKRGL 59
KI++N+SK +F+T E YV+ V+ E + H Y+ ++ L
Sbjct: 323 KIIFNDSKNQFKT---EFYVDEVIHELSNNNSVTHLYMFTNATKL 364
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 4 EMATKSEKEIPKIVWNESKRRFETEDKEAYVEYVVRENGKVMDLV 48
E+ K +EI +++ + +FE K Y+E V+ E + D++
Sbjct: 300 EVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVI 344
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 4 EMATKSEKEIPKIVWNESKRRFETEDKEAYVEYVVRENGKVMDLV 48
E+ K +EI +++ + +FE K Y+E V+ E + D++
Sbjct: 300 EVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVI 344
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 4 EMATKSEKEIPKIVWNESKRRFETEDKEAYVEYVVRENGKVMDLV 48
E+ K +EI +++ + +FE K Y+E V+ E + D++
Sbjct: 300 EVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVI 344
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 4 EMATKSEKEIPKIVWNESKRRFETEDKEAYVEYVVRENGKVMDLV 48
E+ K +EI +++ + +FE K Y+E V+ E + D++
Sbjct: 300 EVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVI 344
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 4 EMATKSEKEIPKIVWNESKRRFETEDKEAYVEYVVRENGKVMDLV 48
E+ K +EI +++ + +FE K Y+E V+ E + D++
Sbjct: 300 EVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVI 344
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 4 EMATKSEKEIPKIVWNESKRRFETEDKEAYVEYVVRENGKVMDLV 48
E+ K +EI +++ + +FE K Y E V+ E + D++
Sbjct: 300 EVEAKVHEEIDRVIGKNRQPKFEDRAKMPYTEAVIHEIQRFGDML 344
>pdb|1OR7|A Chain A, Crystal Structure Of Escherichia Coli Sigmae With The
Cytoplasmic Domain Of Its Anti-Sigma Rsea
pdb|1OR7|B Chain B, Crystal Structure Of Escherichia Coli Sigmae With The
Cytoplasmic Domain Of Its Anti-Sigma Rsea
Length = 194
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 24 RFETEDKEAYVEYVVRENGKVMDLVHTYVPSS 55
R + D++A+ VVR KV LV YVPS
Sbjct: 16 RVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG 47
>pdb|1K28|D Chain D, The Structure Of The Bacteriophage T4 Cell-Puncturing
Device
Length = 391
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 15 KIVWNESKRRFETEDKEAYVEYVVRENGKVMDLVHTY 51
KI++N+SK +F+T E YV+ V+ E + H Y
Sbjct: 323 KIIFNDSKNQFKT---EFYVDEVIHELSNNNSVTHLY 356
>pdb|2DMA|A Chain A, Crystal Structure Of Ph1978 From Pyrococcus Horikoshii Ot3
(Form Ii)
Length = 198
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 10 EKEIPKIVWNESKRRFETEDKEAYVEYV---VRENGKVMDLVHTYVPSSKRGLGL 61
++EI V E KRR ET ++ Y E V ++E K ++ V S+++ LGL
Sbjct: 79 QEEIISSVLEEVKRRLETXSEDEYFESVKALLKEAIKELNEKKVRVXSNEKTLGL 133
>pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOP|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOR|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOS|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
Length = 364
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 29 DKEAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHL-CRAAFNHAKSHSMSIIPTCSYV 87
D +A + ENG ++D + Y S L + + FN KSHS + S +
Sbjct: 78 DGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNFDVEVSNI 137
Query: 88 SDT 90
SDT
Sbjct: 138 SDT 140
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 65 LCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNPTWNSIIYSEDPR 108
L RA N K ++ +PT YVS + W+ I S + +
Sbjct: 251 LTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDK 294
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 65 LCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNPTWNSIIYSEDPR 108
L RA N K ++ +PT YVS + W+ I S + +
Sbjct: 251 LTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDK 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,426,872
Number of Sequences: 62578
Number of extensions: 124822
Number of successful extensions: 353
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 20
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)