Query 033791
Match_columns 111
No_of_seqs 185 out of 1061
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14542 Acetyltransf_CG: GCN5 99.9 1.3E-25 2.9E-30 141.3 9.8 75 24-101 1-78 (78)
2 COG2388 Predicted acetyltransf 99.9 1.3E-22 2.7E-27 132.9 7.8 87 16-103 9-98 (99)
3 PF00583 Acetyltransf_1: Acety 99.1 8.4E-10 1.8E-14 67.5 8.3 56 28-83 4-64 (83)
4 PHA00673 acetyltransferase dom 99.1 8.5E-10 1.9E-14 77.5 8.8 68 16-83 49-124 (154)
5 PRK10146 aminoalkylphosphonic 99.1 6.5E-10 1.4E-14 74.6 7.8 69 28-96 55-132 (144)
6 PF13508 Acetyltransf_7: Acety 99.0 2.8E-09 6.1E-14 65.6 8.3 63 29-95 12-75 (79)
7 COG1246 ArgA N-acetylglutamate 99.0 1.4E-09 2.9E-14 76.2 7.1 73 23-96 40-117 (153)
8 PRK07922 N-acetylglutamate syn 99.0 3.3E-09 7.2E-14 74.7 7.7 64 31-96 58-121 (169)
9 PRK07757 acetyltransferase; Pr 99.0 5.8E-09 1.3E-13 71.0 8.5 67 28-96 49-116 (152)
10 PF13673 Acetyltransf_10: Acet 98.9 9.4E-09 2E-13 66.5 7.7 62 28-95 52-115 (117)
11 PLN02825 amino-acid N-acetyltr 98.9 1E-08 2.3E-13 83.7 8.9 72 24-96 408-484 (515)
12 PF13527 Acetyltransf_9: Acety 98.9 2.1E-08 4.6E-13 66.0 8.3 66 29-95 50-122 (127)
13 PHA01807 hypothetical protein 98.8 1.3E-08 2.7E-13 71.4 7.3 61 28-88 61-125 (153)
14 PRK12308 bifunctional arginino 98.8 1.7E-08 3.6E-13 83.8 9.1 67 28-96 511-578 (614)
15 PTZ00330 acetyltransferase; Pr 98.8 1.8E-08 3.9E-13 67.7 7.5 66 29-95 61-134 (147)
16 KOG3139 N-acetyltransferase [G 98.8 1.4E-08 3E-13 71.6 7.0 73 31-105 69-143 (165)
17 TIGR01890 N-Ac-Glu-synth amino 98.8 3.2E-08 7E-13 78.8 8.8 67 28-95 330-398 (429)
18 cd04301 NAT_SF N-Acyltransfera 98.8 7.7E-08 1.7E-12 54.2 7.9 55 29-83 8-64 (65)
19 PRK05279 N-acetylglutamate syn 98.8 4.1E-08 8.8E-13 78.4 9.0 68 28-96 342-411 (441)
20 PLN02706 glucosamine 6-phospha 98.8 6.8E-08 1.5E-12 65.5 8.6 65 31-95 67-137 (150)
21 PRK10314 putative acyltransfer 98.7 5.5E-08 1.2E-12 67.6 7.7 69 28-96 56-128 (153)
22 TIGR03827 GNAT_ablB putative b 98.7 6.2E-08 1.4E-12 72.6 8.5 56 28-83 166-222 (266)
23 TIGR01575 rimI ribosomal-prote 98.7 1.2E-07 2.6E-12 61.8 8.6 66 28-96 39-110 (131)
24 PRK10975 TDP-fucosamine acetyl 98.7 2.2E-07 4.7E-12 66.1 8.8 66 29-95 111-181 (194)
25 PRK03624 putative acetyltransf 98.7 1.4E-07 3.1E-12 62.0 7.3 67 28-96 53-124 (140)
26 TIGR02382 wecD_rffC TDP-D-fuco 98.6 1.2E-07 2.6E-12 67.5 7.0 55 29-84 108-163 (191)
27 PRK01346 hypothetical protein; 98.6 3.7E-07 8.1E-12 71.8 9.5 68 28-96 55-130 (411)
28 TIGR02406 ectoine_EctA L-2,4-d 98.6 2.6E-07 5.7E-12 64.1 7.7 54 31-84 52-106 (157)
29 cd02169 Citrate_lyase_ligase C 98.6 2.2E-07 4.8E-12 71.3 7.8 62 29-96 15-78 (297)
30 PRK13688 hypothetical protein; 98.6 5.1E-07 1.1E-11 63.3 8.6 62 31-96 57-127 (156)
31 PRK09491 rimI ribosomal-protei 98.5 7.3E-07 1.6E-11 60.3 8.4 66 28-95 48-118 (146)
32 KOG3216 Diamine acetyltransfer 98.5 8.3E-07 1.8E-11 62.3 7.7 55 31-85 67-125 (163)
33 COG0456 RimI Acetyltransferase 98.5 6.9E-07 1.5E-11 61.6 6.9 66 30-95 73-147 (177)
34 PRK09831 putative acyltransfer 98.4 6.7E-07 1.5E-11 60.8 6.2 59 28-96 61-120 (147)
35 COG3153 Predicted acetyltransf 98.4 2.8E-06 6E-11 60.7 8.8 66 28-95 54-124 (171)
36 PRK10140 putative acetyltransf 98.4 1.9E-06 4.1E-11 58.5 7.4 68 28-96 59-135 (162)
37 KOG2488 Acetyltransferase (GNA 98.3 3.2E-06 6.9E-11 61.3 7.6 82 23-104 92-184 (202)
38 PF13420 Acetyltransf_4: Acety 98.3 2.3E-06 4.9E-11 58.0 6.3 66 22-88 50-121 (155)
39 TIGR03103 trio_acet_GNAT GNAT- 98.3 1.4E-06 3.1E-11 71.7 6.2 68 29-96 134-211 (547)
40 COG1247 Sortase and related ac 98.3 3.8E-06 8.1E-11 59.9 7.5 59 29-87 62-124 (169)
41 PRK10514 putative acetyltransf 98.3 2.9E-06 6.3E-11 56.9 5.9 61 29-96 59-120 (145)
42 KOG3396 Glucosamine-phosphate 98.2 1.7E-06 3.7E-11 59.8 4.5 65 31-95 67-137 (150)
43 PF13523 Acetyltransf_8: Acety 98.2 7.7E-06 1.7E-10 55.5 7.7 70 19-88 45-123 (152)
44 TIGR01686 FkbH FkbH-like domai 98.2 4.5E-06 9.8E-11 64.1 7.1 51 31-83 246-296 (320)
45 TIGR00124 cit_ly_ligase [citra 98.2 7.2E-06 1.6E-10 63.9 8.2 70 20-96 28-103 (332)
46 TIGR03448 mycothiol_MshD mycot 98.2 4.3E-06 9.3E-11 62.5 6.3 67 29-95 209-281 (292)
47 PRK10562 putative acetyltransf 98.2 5.3E-06 1.1E-10 56.1 5.7 63 28-96 56-119 (145)
48 PRK15130 spermidine N1-acetylt 98.1 1.2E-05 2.6E-10 56.4 7.0 63 19-82 54-121 (186)
49 TIGR03448 mycothiol_MshD mycot 98.1 5.3E-06 1.1E-10 62.0 5.5 67 28-96 54-122 (292)
50 KOG3397 Acetyltransferases [Ge 98.1 8.2E-06 1.8E-10 58.8 5.6 65 31-95 69-134 (225)
51 COG0454 WecD Histone acetyltra 98.0 9.1E-06 2E-10 48.6 3.4 34 46-79 82-116 (156)
52 PF08445 FR47: FR47-like prote 98.0 5.2E-05 1.1E-09 48.0 6.9 38 45-82 22-59 (86)
53 COG3981 Predicted acetyltransf 97.9 1.9E-05 4E-10 56.4 4.7 76 28-103 77-161 (174)
54 PRK10151 ribosomal-protein-L7/ 97.9 0.0001 2.3E-09 51.3 8.1 55 28-83 75-132 (179)
55 TIGR01211 ELP3 histone acetylt 97.8 7E-05 1.5E-09 61.6 7.0 66 31-96 426-510 (522)
56 PRK10809 ribosomal-protein-S5- 97.8 0.00022 4.7E-09 50.3 8.1 53 31-83 89-143 (194)
57 COG2153 ElaA Predicted acyltra 97.7 0.0001 2.2E-09 51.5 5.9 73 22-95 50-129 (155)
58 PF13302 Acetyltransf_3: Acety 97.7 0.00019 4.2E-09 47.4 7.0 50 31-81 70-121 (142)
59 TIGR03585 PseH pseudaminic aci 97.6 0.00031 6.8E-09 47.3 7.1 53 28-82 59-114 (156)
60 COG3393 Predicted acetyltransf 97.4 0.00049 1.1E-08 52.2 6.5 52 29-81 186-238 (268)
61 PF13718 GNAT_acetyltr_2: GNAT 97.4 0.00037 8.1E-09 50.8 5.0 32 43-74 89-120 (196)
62 PF13880 Acetyltransf_13: ESCO 97.3 0.0004 8.7E-09 42.8 3.9 30 44-73 5-34 (70)
63 COG4552 Eis Predicted acetyltr 97.2 0.00091 2E-08 52.8 5.3 52 44-96 70-121 (389)
64 COG1670 RimL Acetyltransferase 96.9 0.0044 9.5E-08 42.1 6.7 58 31-88 80-140 (187)
65 PF08444 Gly_acyl_tr_C: Aralky 96.8 0.0022 4.8E-08 41.3 3.9 39 43-81 18-56 (89)
66 KOG3138 Predicted N-acetyltran 96.8 0.0026 5.7E-08 46.1 4.8 36 44-79 89-125 (187)
67 PF12746 GNAT_acetyltran: GNAT 96.6 0.015 3.3E-07 44.2 8.0 51 32-85 179-229 (265)
68 PF12568 DUF3749: Acetyltransf 96.5 0.038 8.1E-07 37.8 8.5 50 22-73 37-90 (128)
69 KOG3235 Subunit of the major N 96.2 0.014 3.1E-07 41.7 5.5 54 29-82 51-110 (193)
70 PF13480 Acetyltransf_6: Acety 96.2 0.078 1.7E-06 34.6 8.8 57 28-86 79-136 (142)
71 cd04265 DUF619-NAGS-U DUF619 d 96.1 0.011 2.4E-07 38.7 4.1 66 29-95 19-84 (99)
72 COG3818 Predicted acetyltransf 95.9 0.026 5.7E-07 39.2 5.6 39 43-81 83-121 (167)
73 COG1444 Predicted P-loop ATPas 95.8 0.0053 1.1E-07 52.6 1.9 31 44-74 531-561 (758)
74 cd04264 DUF619-NAGS DUF619 dom 95.6 0.024 5.2E-07 37.1 4.0 66 29-95 18-84 (99)
75 PF01853 MOZ_SAS: MOZ/SAS fami 95.5 0.044 9.6E-07 39.8 5.7 66 16-82 45-118 (188)
76 PLN03238 probable histone acet 94.8 0.091 2E-06 40.5 5.8 63 16-79 120-190 (290)
77 KOG2747 Histone acetyltransfer 94.3 0.087 1.9E-06 42.2 4.7 63 16-78 227-294 (396)
78 PLN03239 histone acetyltransfe 94.2 0.12 2.7E-06 40.8 5.5 62 16-78 178-247 (351)
79 COG5628 Predicted acetyltransf 94.0 0.15 3.2E-06 34.9 4.8 68 28-96 45-117 (143)
80 PTZ00064 histone acetyltransfe 93.7 0.14 3E-06 42.3 5.0 62 16-78 349-418 (552)
81 PF06852 DUF1248: Protein of u 93.5 0.32 7E-06 35.1 6.2 35 42-76 76-110 (181)
82 KOG3234 Acetyltransferase, (GN 93.0 0.16 3.5E-06 36.1 3.8 49 31-79 54-104 (173)
83 KOG4144 Arylalkylamine N-acety 93.0 0.1 2.3E-06 37.2 2.8 52 42-95 99-154 (190)
84 PLN00104 MYST -like histone ac 92.9 0.14 3E-06 41.7 3.8 63 16-79 271-341 (450)
85 PF04377 ATE_C: Arginine-tRNA- 92.8 0.41 9E-06 32.6 5.6 53 28-82 47-100 (128)
86 PF05301 Mec-17: Touch recepto 92.7 0.11 2.4E-06 35.2 2.6 53 46-99 48-102 (120)
87 KOG4135 Predicted phosphogluco 91.8 0.36 7.7E-06 34.3 4.3 33 44-76 107-139 (185)
88 PF14871 GHL6: Hypothetical gl 91.3 0.23 4.9E-06 33.9 2.9 47 57-104 37-85 (132)
89 PRK01305 arginyl-tRNA-protein 91.0 1.2 2.7E-05 33.4 6.8 54 28-83 152-206 (240)
90 COG3053 CitC Citrate lyase syn 90.5 0.66 1.4E-05 36.3 5.1 36 46-81 58-93 (352)
91 KOG4601 Uncharacterized conser 89.9 0.72 1.6E-05 34.8 4.6 32 42-73 106-137 (264)
92 COG1243 ELP3 Histone acetyltra 89.5 0.4 8.6E-06 39.4 3.3 42 53-95 459-502 (515)
93 COG2401 ABC-type ATPase fused 88.9 0.54 1.2E-05 38.7 3.6 35 45-79 242-276 (593)
94 PF00765 Autoind_synth: Autoin 88.1 1.6 3.4E-05 31.3 5.3 54 42-95 88-148 (182)
95 TIGR03694 exosort_acyl putativ 88.0 1.2 2.5E-05 33.2 4.8 54 42-95 109-191 (241)
96 PF01233 NMT: Myristoyl-CoA:pr 86.8 2.8 6E-05 29.8 5.8 48 31-78 91-144 (162)
97 PRK13834 putative autoinducer 82.4 6.3 0.00014 28.7 6.3 40 42-81 97-143 (207)
98 KOG2696 Histone acetyltransfer 81.9 2.3 5E-05 34.1 4.0 33 43-75 216-248 (403)
99 PF04768 DUF619: Protein of un 81.4 2.5 5.5E-05 30.0 3.8 64 31-95 74-138 (170)
100 KOG2535 RNA polymerase II elon 79.3 1.8 4E-05 34.8 2.7 41 54-95 497-540 (554)
101 COG3916 LasI N-acyl-L-homoseri 79.1 8.2 0.00018 28.6 5.9 39 43-81 97-141 (209)
102 cd04266 DUF619-NAGS-FABP DUF61 78.2 7 0.00015 25.9 4.8 53 42-95 37-91 (108)
103 PRK14901 16S rRNA methyltransf 76.4 3.9 8.4E-05 32.8 3.8 52 47-99 326-407 (434)
104 TIGR00563 rsmB ribosomal RNA s 75.4 4.8 0.0001 32.2 4.1 53 46-99 309-391 (426)
105 KOG2036 Predicted P-loop ATPas 73.4 4.2 9.1E-05 35.6 3.4 35 45-79 615-649 (1011)
106 TIGR00446 nop2p NOL1/NOP2/sun 72.6 8 0.00017 28.9 4.5 53 47-99 141-222 (264)
107 COG3375 Uncharacterized conser 72.2 7.7 0.00017 29.3 4.2 41 41-81 70-111 (266)
108 COG5630 ARG2 Acetylglutamate s 72.1 6.3 0.00014 32.0 4.0 66 31-97 387-454 (495)
109 PRK06186 hypothetical protein; 71.8 7.3 0.00016 29.1 4.1 40 46-87 53-92 (229)
110 cd03173 DUF619-like DUF619 dom 70.2 13 0.00029 24.1 4.6 53 42-95 31-83 (98)
111 COG5027 SAS2 Histone acetyltra 70.0 2.2 4.9E-05 34.0 1.0 69 16-85 227-306 (395)
112 PRK14903 16S rRNA methyltransf 65.7 8.6 0.00019 31.0 3.6 53 47-99 308-389 (431)
113 KOG3014 Protein involved in es 64.7 9.6 0.00021 29.0 3.4 32 43-74 182-213 (257)
114 cd06565 GH20_GcnA-like Glycosy 62.3 13 0.00028 28.5 3.9 43 60-103 56-100 (301)
115 PF13444 Acetyltransf_5: Acety 61.3 5.9 0.00013 25.2 1.6 25 42-66 76-100 (101)
116 PRK14904 16S rRNA methyltransf 58.5 15 0.00033 29.5 3.9 54 47-100 319-401 (445)
117 PF04958 AstA: Arginine N-succ 58.0 17 0.00036 28.9 3.9 34 43-76 120-153 (342)
118 PRK04531 acetylglutamate kinas 55.8 18 0.0004 29.0 3.9 53 42-95 308-360 (398)
119 PF06849 DUF1246: Protein of u 55.3 17 0.00036 24.8 3.0 42 67-108 10-51 (124)
120 PRK14902 16S rRNA methyltransf 52.7 26 0.00057 28.1 4.3 55 46-100 320-403 (444)
121 PRK10901 16S rRNA methyltransf 50.4 20 0.00043 28.7 3.3 53 47-99 314-395 (427)
122 TIGR03243 arg_catab_AOST argin 49.6 11 0.00024 29.8 1.7 31 43-73 116-146 (335)
123 PF09924 DUF2156: Uncharacteri 49.6 1.1E+02 0.0024 22.9 7.3 54 28-82 189-243 (299)
124 PRK01045 ispH 4-hydroxy-3-meth 49.5 15 0.00033 28.5 2.4 30 57-90 72-102 (298)
125 PRK12360 4-hydroxy-3-methylbut 48.4 16 0.00035 28.1 2.4 31 57-91 75-106 (281)
126 TIGR03245 arg_AOST_alph argini 48.3 12 0.00026 29.6 1.7 31 43-73 117-147 (336)
127 TIGR03244 arg_catab_AstA argin 47.8 12 0.00027 29.5 1.7 30 43-72 116-145 (336)
128 TIGR00216 ispH_lytB (E)-4-hydr 47.7 17 0.00036 28.0 2.4 30 57-90 72-102 (280)
129 PRK10456 arginine succinyltran 47.1 13 0.00028 29.5 1.7 31 43-73 118-148 (344)
130 COG3033 TnaA Tryptophanase [Am 46.3 56 0.0012 26.7 5.1 61 43-103 185-248 (471)
131 cd04263 DUF619-NAGK-FABP DUF61 45.1 59 0.0013 21.1 4.3 52 42-94 31-82 (98)
132 COG0504 PyrG CTP synthase (UTP 44.7 43 0.00094 28.1 4.4 38 47-86 344-381 (533)
133 COG2935 Putative arginyl-tRNA: 44.7 1.2E+02 0.0025 23.2 6.4 39 45-83 175-213 (253)
134 KOG1472 Histone acetyltransfer 44.3 5.2 0.00011 34.6 -0.9 90 15-105 412-508 (720)
135 PRK13371 4-hydroxy-3-methylbut 43.3 21 0.00046 28.8 2.4 30 57-90 116-146 (387)
136 COG3882 FkbH Predicted enzyme 42.0 16 0.00035 30.6 1.6 65 15-81 451-523 (574)
137 PF08897 DUF1841: Domain of un 41.4 9.9 0.00021 26.3 0.2 33 71-104 13-46 (137)
138 TIGR03019 pepcterm_femAB FemAB 40.6 75 0.0016 24.2 5.0 41 43-83 218-258 (330)
139 COG0761 lytB 4-Hydroxy-3-methy 40.3 28 0.0006 27.1 2.5 29 57-89 73-102 (294)
140 cd06563 GH20_chitobiase-like T 38.9 45 0.00097 26.1 3.6 39 61-99 83-123 (357)
141 COG2898 Uncharacterized conser 38.2 1.9E+02 0.0041 24.5 7.3 53 29-82 402-455 (538)
142 COG1658 Small primase-like pro 38.1 32 0.00069 23.5 2.3 22 50-71 60-81 (127)
143 PF02401 LYTB: LytB protein; 37.0 22 0.00049 27.3 1.6 29 57-89 70-99 (281)
144 PRK03681 hypA hydrogenase nick 36.8 50 0.0011 21.7 3.1 22 60-81 5-26 (114)
145 PF02641 DUF190: Uncharacteriz 36.1 33 0.00072 22.0 2.1 41 46-88 4-44 (101)
146 PRK00087 4-hydroxy-3-methylbut 36.0 30 0.00066 29.4 2.4 31 56-90 71-102 (647)
147 PRK11933 yebU rRNA (cytosine-C 35.2 37 0.0008 27.9 2.7 53 46-98 183-264 (470)
148 PLN02821 1-hydroxy-2-methyl-2- 35.1 36 0.00078 28.1 2.6 30 58-91 185-215 (460)
149 PF07395 Mig-14: Mig-14; Inte 35.0 1.2E+02 0.0027 23.2 5.3 77 23-106 176-259 (264)
150 cd00475 CIS_IPPS Cis (Z)-Isopr 35.0 39 0.00085 25.0 2.6 42 54-96 21-62 (221)
151 PRK02983 lysS lysyl-tRNA synth 34.7 2E+02 0.0043 26.4 7.3 54 28-83 429-483 (1094)
152 KOG2779 N-myristoyl transferas 34.6 40 0.00087 27.2 2.7 47 31-77 148-200 (421)
153 TIGR00151 ispF 2C-methyl-D-ery 33.7 59 0.0013 22.9 3.2 35 46-81 55-91 (155)
154 PF12953 DUF3842: Domain of un 31.7 46 0.00099 22.9 2.3 27 57-84 8-34 (131)
155 TIGR00100 hypA hydrogenase nic 31.5 68 0.0015 21.1 3.1 22 60-81 5-26 (115)
156 PRK14839 undecaprenyl pyrophos 31.5 41 0.0009 25.3 2.2 42 54-96 30-71 (239)
157 PF05292 MCD: Malonyl-CoA deca 31.4 1.1E+02 0.0023 24.6 4.6 41 44-84 181-224 (354)
158 PRK14837 undecaprenyl pyrophos 31.3 58 0.0013 24.4 3.0 42 54-96 27-68 (230)
159 PRK14842 undecaprenyl pyrophos 31.2 48 0.001 25.0 2.5 42 54-96 29-70 (241)
160 TIGR03827 GNAT_ablB putative b 31.2 1.2E+02 0.0026 22.4 4.7 35 61-95 22-57 (266)
161 TIGR00055 uppS undecaprenyl di 31.1 60 0.0013 24.2 3.0 42 54-96 20-61 (226)
162 PF00728 Glyco_hydro_20: Glyco 30.8 52 0.0011 25.1 2.8 40 60-99 69-110 (351)
163 PTZ00349 dehydrodolichyl dipho 30.3 45 0.00097 26.3 2.3 42 54-96 40-81 (322)
164 COG3623 SgaU Putative L-xylulo 29.9 56 0.0012 25.1 2.7 34 53-88 87-120 (287)
165 PRK12380 hydrogenase nickel in 29.8 77 0.0017 20.8 3.1 22 60-81 5-26 (113)
166 PRK00762 hypA hydrogenase nick 29.5 79 0.0017 21.1 3.2 22 60-81 5-26 (124)
167 PF01155 HypA: Hydrogenase exp 29.3 69 0.0015 21.0 2.8 22 60-81 5-26 (113)
168 cd05014 SIS_Kpsf KpsF-like pro 29.1 78 0.0017 20.2 3.1 37 55-95 55-91 (128)
169 PRK14840 undecaprenyl pyrophos 28.8 48 0.001 25.1 2.2 42 54-96 43-84 (250)
170 COG0375 HybF Zn finger protein 28.7 88 0.0019 21.0 3.2 22 60-81 5-26 (115)
171 PRK14831 undecaprenyl pyrophos 28.3 65 0.0014 24.3 2.8 42 54-96 41-82 (249)
172 cd02742 GH20_hexosaminidase Be 28.3 58 0.0012 24.8 2.6 37 61-97 69-107 (303)
173 PF08915 tRNA-Thr_ED: Archaea- 28.3 1E+02 0.0023 21.3 3.6 32 57-88 51-82 (138)
174 TIGR00640 acid_CoA_mut_C methy 27.4 57 0.0012 22.0 2.2 37 67-104 43-79 (132)
175 TIGR01500 sepiapter_red sepiap 27.0 80 0.0017 22.7 3.1 27 58-84 9-35 (256)
176 PF12112 DUF3579: Protein of u 27.0 58 0.0013 21.0 2.0 35 48-84 57-91 (92)
177 PF02474 NodA: Nodulation prot 26.9 1.2E+02 0.0027 22.1 3.9 36 44-80 85-120 (196)
178 cd06568 GH20_SpHex_like A subg 25.5 74 0.0016 24.7 2.8 39 61-99 72-112 (329)
179 PF13380 CoA_binding_2: CoA bi 24.9 56 0.0012 21.3 1.8 25 64-88 89-114 (116)
180 PRK14841 undecaprenyl pyrophos 24.8 92 0.002 23.3 3.1 42 54-96 24-65 (233)
181 PRK14838 undecaprenyl pyrophos 24.3 68 0.0015 24.1 2.3 42 54-96 31-72 (242)
182 PRK00564 hypA hydrogenase nick 24.1 1.1E+02 0.0024 20.2 3.1 22 60-81 5-26 (117)
183 cd06564 GH20_DspB_LnbB-like Gl 24.1 66 0.0014 24.7 2.3 37 61-97 79-117 (326)
184 PRK14832 undecaprenyl pyrophos 24.0 78 0.0017 24.0 2.6 42 54-96 39-80 (253)
185 PRK14833 undecaprenyl pyrophos 23.9 1E+02 0.0022 23.0 3.2 42 54-96 25-66 (233)
186 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.5 1.2E+02 0.0025 19.3 3.1 41 51-95 50-90 (126)
187 PF14488 DUF4434: Domain of un 23.5 1.2E+02 0.0025 21.3 3.3 31 62-93 63-93 (166)
188 PF03376 Adeno_E3B: Adenovirus 23.4 45 0.00097 20.2 0.9 13 53-65 53-65 (67)
189 cd01027 TOPRIM_RNase_M5_like T 23.4 59 0.0013 20.0 1.6 22 49-70 49-70 (81)
190 cd06562 GH20_HexA_HexB-like Be 22.9 82 0.0018 24.6 2.6 37 61-97 67-105 (348)
191 TIGR00441 gmhA phosphoheptose 22.9 1.1E+02 0.0025 20.6 3.1 42 50-95 82-123 (154)
192 PF10929 DUF2811: Protein of u 22.9 40 0.00087 19.9 0.7 11 90-100 16-26 (57)
193 TIGR03212 uraD_N-term-dom puta 22.8 2.3E+02 0.005 21.7 5.0 46 46-91 246-291 (297)
194 PRK10240 undecaprenyl pyrophos 22.6 83 0.0018 23.5 2.5 41 55-96 15-55 (229)
195 KOG2880 SMAD6 interacting prot 22.3 48 0.001 26.8 1.2 44 56-100 251-294 (424)
196 PF01255 Prenyltransf: Putativ 22.1 86 0.0019 23.0 2.5 39 57-96 18-56 (223)
197 PF08032 SpoU_sub_bind: RNA 2' 22.0 1.7E+02 0.0038 16.8 3.7 34 47-85 18-51 (76)
198 PRK14829 undecaprenyl pyrophos 21.9 84 0.0018 23.6 2.4 42 54-96 35-76 (243)
199 PF10283 zf-CCHH: Zinc-finger 21.9 73 0.0016 15.7 1.4 22 82-104 1-22 (26)
200 COG0656 ARA1 Aldo/keto reducta 21.9 1.5E+02 0.0033 22.8 3.8 52 43-103 157-209 (280)
201 smart00481 POLIIIAc DNA polyme 21.9 1.3E+02 0.0028 17.1 2.8 22 66-87 17-38 (67)
202 PF02446 Glyco_hydro_77: 4-alp 21.8 35 0.00075 28.1 0.3 31 53-83 6-38 (496)
203 cd03210 GST_C_Pi GST_C family, 21.8 1E+02 0.0022 19.8 2.6 50 59-109 65-117 (126)
204 PLN02862 2-C-methyl-D-erythrit 21.7 1.1E+02 0.0023 22.9 2.8 36 45-81 114-151 (216)
205 COG1654 BirA Biotin operon rep 21.6 93 0.002 19.3 2.2 24 59-82 29-52 (79)
206 cd06570 GH20_chitobiase-like_1 21.4 1E+02 0.0023 23.8 2.9 38 61-98 65-104 (311)
207 PRK00414 gmhA phosphoheptose i 21.4 1.2E+02 0.0027 21.4 3.1 32 64-96 125-156 (192)
208 PF08369 PCP_red: Proto-chloro 21.3 1.4E+02 0.003 16.3 2.7 21 63-83 18-38 (45)
209 KOG2387 CTP synthase (UTP-ammo 21.2 1.7E+02 0.0036 24.6 4.1 38 47-86 364-401 (585)
210 PF05484 LRV_FeS: LRV protein 21.1 47 0.001 19.6 0.7 11 90-100 45-55 (57)
211 TIGR03127 RuMP_HxlB 6-phospho 20.9 1.3E+02 0.0027 20.7 3.0 42 50-95 75-116 (179)
212 PRK14827 undecaprenyl pyrophos 20.7 86 0.0019 24.4 2.3 42 54-96 88-129 (296)
213 cd04795 SIS SIS domain. SIS (S 20.6 1.3E+02 0.0029 17.4 2.8 21 64-84 61-81 (87)
214 PF02631 RecX: RecX family; I 20.3 81 0.0018 20.4 1.8 23 57-79 2-24 (121)
215 cd00554 MECDP_synthase MECDP_s 20.2 1.3E+02 0.0027 21.2 2.8 35 46-81 55-91 (153)
No 1
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=99.93 E-value=1.3e-25 Score=141.34 Aligned_cols=75 Identities=37% Similarity=0.735 Sum_probs=67.0
Q ss_pred eEEE--eC-cEEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCcCccc
Q 033791 24 RFET--ED-KEAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNPTWNS 100 (111)
Q Consensus 24 ~f~~--~g-~~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p~y~~ 100 (111)
||++ +| .+|++.|+. +++++.|.||+|+|++||||+|+.|++.++++|+++|++++|+|||++ .||++||+|+|
T Consensus 1 RF~~~~~g~~~a~l~Y~~--~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~p~C~y~~-~~~~~hpey~d 77 (78)
T PF14542_consen 1 RFELKDDGEEIAELTYRE--DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVVPTCSYVA-KYFRRHPEYQD 77 (78)
T ss_dssp EEEEESSTTEEEEEEEEE--SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEEETSHHHH-HHHHH-GGGTT
T ss_pred CEEEEECCEEEEEEEEEe--CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEEEECHHHH-HHHHhCccccc
Confidence 6888 45 499999987 458999999999999999999999999999999999999999999999 89999999998
Q ss_pred c
Q 033791 101 I 101 (111)
Q Consensus 101 l 101 (111)
|
T Consensus 78 l 78 (78)
T PF14542_consen 78 L 78 (78)
T ss_dssp T
T ss_pred C
Confidence 6
No 2
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=99.88 E-value=1.3e-22 Score=132.94 Aligned_cols=87 Identities=30% Similarity=0.551 Sum_probs=77.6
Q ss_pred EEEcCCCceEEE--eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhh
Q 033791 16 IVWNESKRRFET--EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYL 92 (111)
Q Consensus 16 i~~~~~~~~f~~--~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~ 92 (111)
.+++..+.+|.+ +|+ +|++.|....+ +.+.|.|++|++++||||+|++|++++++.||+.|++++|+|||....|+
T Consensus 9 ~~~~~~~~~y~~~~~G~~~~e~~y~~~~~-~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~Csf~~a~~~ 87 (99)
T COG2388 9 EIRNGENGRYVLTDEGEVIGEATYYDRGE-NLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPLCSFAVATYF 87 (99)
T ss_pred eeeccCceEEEEecCCcEEEEEEEecCCC-CEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEcccchHHHHHHH
Confidence 567777788887 464 99999998754 79999999999999999999999999999999999999999998874699
Q ss_pred hhCcCcccccc
Q 033791 93 PRNPTWNSIIY 103 (111)
Q Consensus 93 ~~~p~y~~l~~ 103 (111)
++||+|+|+..
T Consensus 88 ~~~~e~~dv~~ 98 (99)
T COG2388 88 ERHPEYADVEA 98 (99)
T ss_pred HhChhHHhHhc
Confidence 99999999864
No 3
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.10 E-value=8.4e-10 Score=67.55 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=49.0
Q ss_pred eCc-EEEEEEEEecCC----cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEee
Q 033791 28 EDK-EAYVEYVVRENG----KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPT 83 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~----~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~ 83 (111)
+|+ +|++.+...... +.+.|..++|+|+|||+|||+.|++.++++|++.|++.+.+
T Consensus 4 ~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~ 64 (83)
T PF00583_consen 4 DGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYL 64 (83)
T ss_dssp TTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEE
T ss_pred CCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEE
Confidence 466 899998887643 69999999999999999999999999999999999886544
No 4
>PHA00673 acetyltransferase domain containing protein
Probab=99.09 E-value=8.5e-10 Score=77.51 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=54.7
Q ss_pred EEEcCCCceEEE--eCc-EEEEEEEEecC-----CcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEee
Q 033791 16 IVWNESKRRFET--EDK-EAYVEYVVREN-----GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPT 83 (111)
Q Consensus 16 i~~~~~~~~f~~--~g~-~G~i~y~~~~~-----~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~ 83 (111)
+..+++...|.. +|+ +|++.+...+. .....|+.++|+|++||||||++|++.++++|+++|+..+.+
T Consensus 49 i~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyi 124 (154)
T PHA00673 49 MEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYV 124 (154)
T ss_pred HHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEE
Confidence 455676666666 455 89888776542 245689999999999999999999999999999999986644
No 5
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.08 E-value=6.5e-10 Score=74.58 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=52.2
Q ss_pred eCc-EEEEEEEEec----CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccch----hhhhhhhCc
Q 033791 28 EDK-EAYVEYVVRE----NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYV----SDTYLPRNP 96 (111)
Q Consensus 28 ~g~-~G~i~y~~~~----~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~----~~~~~~~~p 96 (111)
+++ +|++.+.... .+....|..++|+|++||||+|+.|+++++++|++.|++.+.+.+.. +..|++++.
T Consensus 55 ~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~G 132 (144)
T PRK10146 55 DGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREG 132 (144)
T ss_pred CCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcC
Confidence 355 8999886532 11234788999999999999999999999999999999877665442 225666653
No 6
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.02 E-value=2.8e-09 Score=65.62 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=47.6
Q ss_pred Cc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhC
Q 033791 29 DK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 29 g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~ 95 (111)
++ +|++.+...+ +.+.|..++|+|+|||||||++|++.+.+.++..+ +...|.-...+|+.++
T Consensus 12 ~~ivG~~~~~~~~--~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~~~--i~l~~~~~~~~fY~~~ 75 (79)
T PF13508_consen 12 GEIVGFIRLWPNE--DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKSKK--IFLFTNPAAIKFYEKL 75 (79)
T ss_dssp TEEEEEEEEEETT--TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTCSE--EEEEEEHHHHHHHHHT
T ss_pred CEEEEEEEEEEcC--CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCCCc--EEEEEcHHHHHHHHHC
Confidence 45 8999997653 58899999999999999999999999999995544 3444433333677766
No 7
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.01 E-value=1.4e-09 Score=76.24 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=62.9
Q ss_pred ceEEE---eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeecc-chhhhhhhhCc
Q 033791 23 RRFET---EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCS-YVSDTYLPRNP 96 (111)
Q Consensus 23 ~~f~~---~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs-~~~~~~~~~~p 96 (111)
..|.+ +|+ +|++.+.+....+...|-.+.|+|++||+|+|..|+++++..|++.|++.+.+++ +.. .||+++.
T Consensus 40 ~dF~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt~~~-~~F~~~G 117 (153)
T COG1246 40 DDFTIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTTRSP-EFFAERG 117 (153)
T ss_pred hhheeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeecccH-HHHHHcC
Confidence 34665 466 8999988544457899999999999999999999999999999999999988888 888 8999874
No 8
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.96 E-value=3.3e-09 Score=74.69 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=54.6
Q ss_pred EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 31 EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 31 ~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
+|++.+....+ +.+.|..++|+|++||+|+|++|++.++++|++.|++.+.+.++.. .|++|+.
T Consensus 58 iG~~~~~~~~~-~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~~~-~fY~k~G 121 (169)
T PRK07922 58 VGCGALHVMWE-DLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTFEV-EFFARHG 121 (169)
T ss_pred EEEEEEeecCC-CceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEeccH-HHHHHCC
Confidence 89888765433 4678899999999999999999999999999999999877666767 6888884
No 9
>PRK07757 acetyltransferase; Provisional
Probab=98.96 E-value=5.8e-09 Score=70.96 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=56.1
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
+|+ +|++.+....+ +...|..++|+|+|||+|+|+.|++.++++|++.|+..+.+.+... +|++|+.
T Consensus 49 ~~~lvG~~~l~~~~~-~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~~~-~~Y~k~G 116 (152)
T PRK07757 49 EGEIVGCCALHILWE-DLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTYQP-EFFEKLG 116 (152)
T ss_pred CCEEEEEEEEEeccC-CceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeCcH-HHHHHCC
Confidence 455 99999876543 4568889999999999999999999999999999998776667666 6888873
No 10
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.90 E-value=9.4e-09 Score=66.50 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=45.7
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeec-cchhhhhhhhC
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTC-SYVSDTYLPRN 95 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~c-s~~~~~~~~~~ 95 (111)
+|+ +|++.+. ++ . .|.+++|.|+|||+|||++|++.+++.+++ |++.+.++ +..+..|++++
T Consensus 52 ~~~ivG~~~~~--~~-~--~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~~ 115 (117)
T PF13673_consen 52 GGEIVGFAWLE--PD-G--EISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRKL 115 (117)
T ss_dssp TTEEEEEEEEE--TC-E--EEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHHT
T ss_pred CCEEEEEEEEc--CC-C--eEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHhC
Confidence 355 8999986 22 2 389999999999999999999999999977 88866553 33333555544
No 11
>PLN02825 amino-acid N-acetyltransferase
Probab=98.88 E-value=1e-08 Score=83.71 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=58.2
Q ss_pred eEEE---eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEe-eccchhhhhhhhCc
Q 033791 24 RFET---EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIP-TCSYVSDTYLPRNP 96 (111)
Q Consensus 24 ~f~~---~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~-~cs~~~~~~~~~~p 96 (111)
.|++ ||+ +|++.+....+++..+|..++|+|+|||+|+|++|+++++++|+++|++.+. +++-.. .||+++-
T Consensus 408 ~f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Lltt~a~-~fY~k~G 484 (515)
T PLN02825 408 SFVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLTTRTA-DWFVRRG 484 (515)
T ss_pred cEEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEeCcHH-HHHHHCC
Confidence 4554 466 8999877655556789999999999999999999999999999999998664 455555 7888874
No 12
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.86 E-value=2.1e-08 Score=66.05 Aligned_cols=66 Identities=24% Similarity=0.289 Sum_probs=50.7
Q ss_pred Cc-EEEEEEEEe---cCC---cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhC
Q 033791 29 DK-EAYVEYVVR---ENG---KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 29 g~-~G~i~y~~~---~~~---~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~ 95 (111)
|+ +|.+.+.+. ..+ ....|..+.|+|+|||||+|++|++++++.++++|+..+.+-|... .|+++.
T Consensus 50 ~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~~~~-~~Y~~~ 122 (127)
T PF13527_consen 50 GKIVGHVGLIPRRLSVGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFPSSP-PFYRRF 122 (127)
T ss_dssp TEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE-SSH-HHHHHT
T ss_pred CEEEEEEEEEEEEEEECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEecCCh-hhhhcC
Confidence 44 776665443 122 3578999999999999999999999999999999999888887666 688776
No 13
>PHA01807 hypothetical protein
Probab=98.85 E-value=1.3e-08 Score=71.37 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=47.7
Q ss_pred eCc-EEEEEEEEecCC---cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchh
Q 033791 28 EDK-EAYVEYVVRENG---KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVS 88 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~---~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~ 88 (111)
+|+ +|++.+....+. ..+.|..+||+|+|||+|||++||+.++++|++.|++.+.++.-..
T Consensus 61 dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~ 125 (153)
T PHA01807 61 DGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREG 125 (153)
T ss_pred CCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 456 899998754322 2334566899999999999999999999999999998776655443
No 14
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.85 E-value=1.7e-08 Score=83.82 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=55.7
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
+|+ +||+.+...+ ++..+|..++|+|+|||||||++|+++++++|++.|++.+.+..... .||+|+.
T Consensus 511 ~g~IVG~~~l~~~~-~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~a~-~FYek~G 578 (614)
T PRK12308 511 HGEVTGCASLYIYD-SGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTRVP-EFFMKQG 578 (614)
T ss_pred CCEEEEEEEEEEcC-CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeCcH-HHHHHCC
Confidence 355 8999887654 35678999999999999999999999999999999998765555455 6888874
No 15
>PTZ00330 acetyltransferase; Provisional
Probab=98.83 E-value=1.8e-08 Score=67.70 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=49.0
Q ss_pred Cc-EEEEEEEEec-----CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEe--eccchhhhhhhhC
Q 033791 29 DK-EAYVEYVVRE-----NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIP--TCSYVSDTYLPRN 95 (111)
Q Consensus 29 g~-~G~i~y~~~~-----~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~--~cs~~~~~~~~~~ 95 (111)
|+ +|++.+.... +.....|..++|+|+|||+|||++|++.++++|++.|+..+. ..+-.. .|++++
T Consensus 61 ~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~-~~y~k~ 134 (147)
T PTZ00330 61 QRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMV-AFYKKL 134 (147)
T ss_pred CEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHH-HHHHHC
Confidence 55 8999875431 113568999999999999999999999999999999886432 222333 566655
No 16
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.83 E-value=1.4e-08 Score=71.61 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=57.4
Q ss_pred EEEEEEEEecCC--cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCcCcccccccC
Q 033791 31 EAYVEYVVRENG--KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNPTWNSIIYSE 105 (111)
Q Consensus 31 ~G~i~y~~~~~~--~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p~y~~l~~~~ 105 (111)
+|.+.+.....- ....|.+++|+++|||||||+.|++.+++.++.+|+.-+.+-+-+.+ .....-|+.+=.+.
T Consensus 69 VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n--~~A~~LY~sLGF~r 143 (165)
T KOG3139|consen 69 VGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTN--LSALRLYESLGFKR 143 (165)
T ss_pred EEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccc--hHHHHHHHhcCceE
Confidence 888888764322 36899999999999999999999999999999999997777666663 34555566654443
No 17
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.79 E-value=3.2e-08 Score=78.82 Aligned_cols=67 Identities=7% Similarity=0.053 Sum_probs=54.8
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEE-eeccchhhhhhhhC
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSII-PTCSYVSDTYLPRN 95 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i-~~cs~~~~~~~~~~ 95 (111)
+++ +|++.+....+....+|..++|+|+|||+|+|++|+++++++|+++|++.+ .+.+... .||+++
T Consensus 330 dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~~a~-~fY~k~ 398 (429)
T TIGR01890 330 DGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTTRTG-HWFRER 398 (429)
T ss_pred CCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeecchH-HHHHHC
Confidence 455 899988876444567899999999999999999999999999999999754 3445555 788877
No 18
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.78 E-value=7.7e-08 Score=54.20 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=46.7
Q ss_pred Cc-EEEEEEEEecC-CcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEee
Q 033791 29 DK-EAYVEYVVREN-GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPT 83 (111)
Q Consensus 29 g~-~G~i~y~~~~~-~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~ 83 (111)
++ +|++.+...+. .+.+.+..++|+|+|||+|+|+.|+..+++++.+.|+..+.+
T Consensus 8 ~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 8 GEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred CEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 44 89998887541 367899999999999999999999999999999988876654
No 19
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.78 E-value=4.1e-08 Score=78.40 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=54.7
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEe-eccchhhhhhhhCc
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIP-TCSYVSDTYLPRNP 96 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~-~cs~~~~~~~~~~p 96 (111)
+++ +|++.+..........|..++|+|+|||||+|++|+++++++|+++|+..+. .++-.. .||+++.
T Consensus 342 dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~~~a~-~fY~k~G 411 (441)
T PRK05279 342 DGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLTTRTA-HWFLERG 411 (441)
T ss_pred CCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEecchHH-HHHHHCc
Confidence 355 8998877654345678999999999999999999999999999999997653 444444 7888884
No 20
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.77 E-value=6.8e-08 Score=65.52 Aligned_cols=65 Identities=23% Similarity=0.220 Sum_probs=47.0
Q ss_pred EEEEEEEEe-----cCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchh-hhhhhhC
Q 033791 31 EAYVEYVVR-----ENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVS-DTYLPRN 95 (111)
Q Consensus 31 ~G~i~y~~~-----~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~-~~~~~~~ 95 (111)
+|++.+... .......|..++|+|+|||||||+.|++.++++|++.|++.+.+..... ..|++|+
T Consensus 67 vG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~y~k~ 137 (150)
T PLN02706 67 IATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAFYEKC 137 (150)
T ss_pred EEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHHHHHC
Confidence 788776421 1224567888999999999999999999999999999997654422221 2455555
No 21
>PRK10314 putative acyltransferase; Provisional
Probab=98.74 E-value=5.5e-08 Score=67.57 Aligned_cols=69 Identities=12% Similarity=0.148 Sum_probs=51.0
Q ss_pred eCc-EEEEEEEEecCC-cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHC-CCcE-EeeccchhhhhhhhCc
Q 033791 28 EDK-EAYVEYVVRENG-KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSH-SMSI-IPTCSYVSDTYLPRNP 96 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~-~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~-g~~~-i~~cs~~~~~~~~~~p 96 (111)
+++ +|++.+...+++ ....|..++|+|+|||+|||++||+++++++++. +.+. ...+...+..|+++..
T Consensus 56 ~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k~G 128 (153)
T PRK10314 56 NDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQSFG 128 (153)
T ss_pred CCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHHCC
Confidence 444 899988764322 3578999999999999999999999999999885 5543 3333333336777764
No 22
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.74 E-value=6.2e-08 Score=72.57 Aligned_cols=56 Identities=20% Similarity=0.116 Sum_probs=46.9
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEee
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPT 83 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~ 83 (111)
+|+ +|++.+........+.|..++|+|+|||+|||+.|++.+++++++.|++.+-+
T Consensus 166 ~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~ 222 (266)
T TIGR03827 166 GGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYT 222 (266)
T ss_pred CCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEe
Confidence 455 89988754433456899999999999999999999999999999999986643
No 23
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.73 E-value=1.2e-07 Score=61.81 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=50.4
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEee-c----cchhhhhhhhCc
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPT-C----SYVSDTYLPRNP 96 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~-c----s~~~~~~~~~~p 96 (111)
+++ +|++.+.... ....+..++|+|+|||||+|++|++.+++++.+.|++.+.+ | +... .|++++.
T Consensus 39 ~~~~vg~~~~~~~~--~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~-~~y~~~G 110 (131)
T TIGR01575 39 GGKVVGYAGVQIVL--DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQ-ALYKKLG 110 (131)
T ss_pred CCeEEEEEEEEecC--CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHH-HHHHHcC
Confidence 345 8999987653 34578999999999999999999999999999988765543 2 2233 5676663
No 24
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.65 E-value=2.2e-07 Score=66.15 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=52.1
Q ss_pred Cc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchh----hhhhhhC
Q 033791 29 DK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVS----DTYLPRN 95 (111)
Q Consensus 29 g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~----~~~~~~~ 95 (111)
|. +|++.+...++ ....|..++|+|+|||||+|++|++.++++|++.|++.+.++.... ..|++|+
T Consensus 111 g~~vG~~~l~~~~~-~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~ 181 (194)
T PRK10975 111 GQIQGFVTLRELND-TDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRS 181 (194)
T ss_pred CCEEEEEEEEecCC-CceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHC
Confidence 44 89999876543 4578899999999999999999999999999999998776554322 2466655
No 25
>PRK03624 putative acetyltransferase; Provisional
Probab=98.65 E-value=1.4e-07 Score=62.01 Aligned_cols=67 Identities=10% Similarity=-0.128 Sum_probs=50.0
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchh----hhhhhhCc
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVS----DTYLPRNP 96 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~----~~~~~~~p 96 (111)
++. +|++.+.... ....+..++|+|+|||+|+|+.|++.+++++++.|++.+.++.... .+|++|+.
T Consensus 53 ~~~~vG~~~~~~~~--~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~G 124 (140)
T PRK03624 53 GGEVVGTVMGGYDG--HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALG 124 (140)
T ss_pred CCcEEEEEEeeccC--CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcC
Confidence 344 8998876432 3456788999999999999999999999999999998665443221 14666664
No 26
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.64 E-value=1.2e-07 Score=67.46 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=47.1
Q ss_pred Cc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeec
Q 033791 29 DK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTC 84 (111)
Q Consensus 29 g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~c 84 (111)
|. +|++.+...++ ....|..++|+|++||||+|++|++.++++|++.|+..+-++
T Consensus 108 g~iiG~i~l~~~~~-~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~ 163 (191)
T TIGR02382 108 GDPRGYVTLRELND-TDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVA 163 (191)
T ss_pred CeEEEEEEEEecCC-CceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 44 89999876543 456889999999999999999999999999999999876655
No 27
>PRK01346 hypothetical protein; Provisional
Probab=98.60 E-value=3.7e-07 Score=71.77 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=55.9
Q ss_pred eCc-EEEEEEEEec----CC---cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 28 EDK-EAYVEYVVRE----NG---KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 28 ~g~-~G~i~y~~~~----~~---~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
+|+ +|++.+.... .+ ....|..++|+|+|||||||++||+++++.++++|+..+.+.+... .|+++..
T Consensus 55 ~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~~-~~Y~r~G 130 (411)
T PRK01346 55 GDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASEG-GIYGRFG 130 (411)
T ss_pred CCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCch-hhHhhCC
Confidence 355 8888765321 11 3578999999999999999999999999999999999888888887 7888774
No 28
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.60 E-value=2.6e-07 Score=64.05 Aligned_cols=54 Identities=22% Similarity=0.270 Sum_probs=44.2
Q ss_pred EEEEEEEEec-CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeec
Q 033791 31 EAYVEYVVRE-NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTC 84 (111)
Q Consensus 31 ~G~i~y~~~~-~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~c 84 (111)
+|++.+.... ....+.+..++|+|++||||+|++|++.++++|+..++..+.+.
T Consensus 52 vG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~ 106 (157)
T TIGR02406 52 VGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETT 106 (157)
T ss_pred EEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 8998765432 33567889999999999999999999999999999888765443
No 29
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.59 E-value=2.2e-07 Score=71.33 Aligned_cols=62 Identities=15% Similarity=0.026 Sum_probs=49.1
Q ss_pred Cc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEE-eeccchhhhhhhhCc
Q 033791 29 DK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSII-PTCSYVSDTYLPRNP 96 (111)
Q Consensus 29 g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i-~~cs~~~~~~~~~~p 96 (111)
|+ +|++.+.. . .|..++|+|+|||+|+|++||++++++|+++|++.+ ..|...+..|+++..
T Consensus 15 ~~iVG~~~l~~----~--~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek~G 78 (297)
T cd02169 15 GELIATGSIAG----N--VLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRGLG 78 (297)
T ss_pred CEEEEEEEecc----C--EEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHHCC
Confidence 55 88877642 2 589999999999999999999999999999999744 445444447888774
No 30
>PRK13688 hypothetical protein; Provisional
Probab=98.57 E-value=5.1e-07 Score=63.31 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=43.1
Q ss_pred EEEEEEEEec---------CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 31 EAYVEYVVRE---------NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 31 ~G~i~y~~~~---------~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
+|++.+...+ +++.+.|..++|+|+|||||||++|++. |++.++.+...+...+..|++|+.
T Consensus 57 VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~----a~~~~~~~~~~~~~~a~~FY~k~G 127 (156)
T PRK13688 57 VARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDF----AKSFQLPIKTIARNKSKDFWLKLG 127 (156)
T ss_pred EEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHH----HHHhCCeEEEEeccchHHHHHhCC
Confidence 8877654321 2356899999999999999999999985 445565543333333347888874
No 31
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.54 E-value=7.3e-07 Score=60.25 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=49.5
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeecc----chhhhhhhhC
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCS----YVSDTYLPRN 95 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs----~~~~~~~~~~ 95 (111)
+++ +|++.+.... +...+..++|+|+|||+|+|+.|++.+++.+++.|+..+.+.. ..+..|++++
T Consensus 48 ~~~~vG~~~~~~~~--~~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~ 118 (146)
T PRK09491 48 NGQMAAFAITQVVL--DEATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESL 118 (146)
T ss_pred CCeEEEEEEEEeec--CceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHc
Confidence 455 9998887643 2457888999999999999999999999999999987543321 1222566665
No 32
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=98.49 E-value=8.3e-07 Score=62.34 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=46.3
Q ss_pred EEEEEEEEec----CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeecc
Q 033791 31 EAYVEYVVRE----NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCS 85 (111)
Q Consensus 31 ~G~i~y~~~~----~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs 85 (111)
+|++.|-.+- ....+.|+.+||.|.|||+|+|+.|++.+-+.|.+.|+..+--|.
T Consensus 67 aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~v 125 (163)
T KOG3216|consen 67 AGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVV 125 (163)
T ss_pred eEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 8988876542 225789999999999999999999999999999999998664443
No 33
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.47 E-value=6.9e-07 Score=61.58 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=49.4
Q ss_pred cEEEEEEEEecCC----cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCC-cEEeeccchh----hhhhhhC
Q 033791 30 KEAYVEYVVRENG----KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSM-SIIPTCSYVS----DTYLPRN 95 (111)
Q Consensus 30 ~~G~i~y~~~~~~----~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~-~~i~~cs~~~----~~~~~~~ 95 (111)
.+||+..+...+. ...+|..+.|+|+|||+|||++|++++++.+++.+. ..+.+..... ..+++++
T Consensus 73 ~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~ 147 (177)
T COG0456 73 VVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKL 147 (177)
T ss_pred eeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHc
Confidence 3888888654321 167999999999999999999999999999999986 5554433322 2566665
No 34
>PRK09831 putative acyltransferase; Provisional
Probab=98.44 E-value=6.7e-07 Score=60.84 Aligned_cols=59 Identities=10% Similarity=0.207 Sum_probs=44.9
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
+|+ +|++.+.. ..+..++|+|++||||||++|++++++.+++ +.+ ..+.... +|++++.
T Consensus 61 ~~~iiG~~~~~~------~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~--l~v-~~~~~a~-~~Y~k~G 120 (147)
T PRK09831 61 NAQPVGFITCIE------HYIDMLFVDPEYTRRGVASALLKPLIKSESE--LTV-DASITAK-PFFERYG 120 (147)
T ss_pred CCEEEEEEEehh------ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh--eEe-ecchhhH-HHHHHCC
Confidence 455 89887742 3578899999999999999999999999887 332 3344444 7888773
No 35
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=98.40 E-value=2.8e-06 Score=60.69 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=51.1
Q ss_pred eCc-EEEEEEEEec----CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhC
Q 033791 28 EDK-EAYVEYVVRE----NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 28 ~g~-~G~i~y~~~~----~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~ 95 (111)
+|. +|.|-++... ..+.+-|--+.|+|++||||||+.|++..++.++..|+..+.+.-... |+.|.
T Consensus 54 ~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp~--YY~rf 124 (171)
T COG3153 54 DGEVVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDPT--YYSRF 124 (171)
T ss_pred CCEEEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCcc--ccccc
Confidence 344 8999888753 224667777999999999999999999999999999998665544444 44444
No 36
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.39 E-value=1.9e-06 Score=58.46 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=47.2
Q ss_pred eCc-EEEEEEEEecC---CcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHH-CCCcEEeeccc----hhhhhhhhCc
Q 033791 28 EDK-EAYVEYVVREN---GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKS-HSMSIIPTCSY----VSDTYLPRNP 96 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~---~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~-~g~~~i~~cs~----~~~~~~~~~p 96 (111)
+|+ +|++.+..... ..... ..++|+|+|||+|||+.|++.++++|++ .|+..+.++.+ .+..|++++.
T Consensus 59 ~~~~vG~~~~~~~~~~~~~~~~~-~~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~G 135 (162)
T PRK10140 59 DGDVVGHLTIDVQQRPRRSHVAD-FGICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYG 135 (162)
T ss_pred CCEEEEEEEEecccccccceEEE-EEEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCC
Confidence 345 89998875321 12223 2589999999999999999999999998 58775544432 2224666653
No 37
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=98.32 E-value=3.2e-06 Score=61.28 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=62.0
Q ss_pred ceEEE--eC---cEEEEEEEEecCCc--EEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchh----hhh
Q 033791 23 RRFET--ED---KEAYVEYVVRENGK--VMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVS----DTY 91 (111)
Q Consensus 23 ~~f~~--~g---~~G~i~y~~~~~~~--~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~----~~~ 91 (111)
.+|.+ ++ .+||..|+..-|.+ ++.+.++.|.+.|||+|||+.|++.+...|.....+.+.+..|.. -.|
T Consensus 92 ~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~F 171 (202)
T KOG2488|consen 92 LRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGF 171 (202)
T ss_pred ceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHH
Confidence 45655 32 38999999865434 889999999999999999999999999999998887555544433 257
Q ss_pred hhhCcCccccccc
Q 033791 92 LPRNPTWNSIIYS 104 (111)
Q Consensus 92 ~~~~p~y~~l~~~ 104 (111)
|.++..+.+--.+
T Consensus 172 y~~~gf~~~~~sp 184 (202)
T KOG2488|consen 172 YHRLGFVVDEESP 184 (202)
T ss_pred HHHcCcccCCCCC
Confidence 7777666655444
No 38
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.31 E-value=2.3e-06 Score=57.98 Aligned_cols=66 Identities=26% Similarity=0.288 Sum_probs=48.9
Q ss_pred CceEEE-e--Cc-EEEEEEEEecCC-cEEEEEEEEECCCCCCccHHHHHHHHHHHHH-HHCCCcEEeeccchh
Q 033791 22 KRRFET-E--DK-EAYVEYVVRENG-KVMDLVHTYVPSSKRGLGLASHLCRAAFNHA-KSHSMSIIPTCSYVS 88 (111)
Q Consensus 22 ~~~f~~-~--g~-~G~i~y~~~~~~-~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a-~~~g~~~i~~cs~~~ 88 (111)
...|.+ + |. +|++.+...+.. ..+.+. ++|.|++|++|+|+.|++.++++| ++.|++.+.++.+..
T Consensus 50 ~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~ 121 (155)
T PF13420_consen 50 QRLFLVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSS 121 (155)
T ss_dssp TEEEEEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT
T ss_pred CcEEEEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecC
Confidence 344444 3 44 999999976432 345555 888899999999999999999999 999999776654443
No 39
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.30 E-value=1.4e-06 Score=71.67 Aligned_cols=68 Identities=15% Similarity=0.026 Sum_probs=50.2
Q ss_pred Cc-EEEEEEEEe-----cCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccc----hhhhhhhhCc
Q 033791 29 DK-EAYVEYVVR-----ENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSY----VSDTYLPRNP 96 (111)
Q Consensus 29 g~-~G~i~y~~~-----~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~----~~~~~~~~~p 96 (111)
|+ +|++.+... +......|..++|+|+|||||||++|++.+++++++.|+..+.+... .+..|+++..
T Consensus 134 g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klG 211 (547)
T TIGR03103 134 GAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLG 211 (547)
T ss_pred CeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCC
Confidence 44 899875321 11223678899999999999999999999999999999987654432 2225777753
No 40
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=3.8e-06 Score=59.93 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=45.6
Q ss_pred Cc-EEEEEEEEec--CCcEEEEE-EEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccch
Q 033791 29 DK-EAYVEYVVRE--NGKVMDLV-HTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYV 87 (111)
Q Consensus 29 g~-~G~i~y~~~~--~~~~~~i~-~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~ 87 (111)
|+ +||+.+.... ......++ .+||+|+.||+|||++|++.+++.++.+|+..+..|-..
T Consensus 62 g~v~G~a~~~~fr~r~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~ 124 (169)
T COG1247 62 GKVLGYASAGPFRERPAYRHTVELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIES 124 (169)
T ss_pred CeEEEEEEeeeccCccccceEEEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcC
Confidence 55 7888877643 12334444 499999999999999999999999999999877555443
No 41
>PRK10514 putative acetyltransferase; Provisional
Probab=98.25 E-value=2.9e-06 Score=56.92 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=41.6
Q ss_pred Cc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 29 DK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 29 g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
++ +|++.+.. ..+..++|+|+|||||+|++|++.+++.++...+.+.....-.. .|++|..
T Consensus 59 ~~~iG~~~~~~------~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~i~~~v~~~N~~a~-~~yek~G 120 (145)
T PRK10514 59 DQPVGFMLLSG------GHMEALFVDPDVRGCGVGRMLVEHALSLHPELTTDVNEQNEQAV-GFYKKMG 120 (145)
T ss_pred CcEEEEEEEec------CcEeEEEECHHhccCCHHHHHHHHHHHhccccEEEeecCCHHHH-HHHHHCC
Confidence 45 89988742 24668999999999999999999999876432222222222234 5777663
No 42
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.24 E-value=1.7e-06 Score=59.80 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=53.0
Q ss_pred EEEEEEEEe-----cCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCC-cEEeeccchhhhhhhhC
Q 033791 31 EAYVEYVVR-----ENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSM-SIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 31 ~G~i~y~~~-----~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~-~~i~~cs~~~~~~~~~~ 95 (111)
+|-.++-.. ..+...+|+.+.|++++|||+||+.|++.+++.|+..|+ +++..|+-..-+|+++.
T Consensus 67 igtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~FYeKc 137 (150)
T KOG3396|consen 67 IGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVKFYEKC 137 (150)
T ss_pred EEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhhHHHHc
Confidence 555554432 245667999999999999999999999999999999987 57788987777888876
No 43
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=98.24 E-value=7.7e-06 Score=55.54 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=50.5
Q ss_pred cCCCceEEE--eCc-EEEEEEEEec-----CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHC-CCcEEeeccchh
Q 033791 19 NESKRRFET--EDK-EAYVEYVVRE-----NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSH-SMSIIPTCSYVS 88 (111)
Q Consensus 19 ~~~~~~f~~--~g~-~G~i~y~~~~-----~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~-g~~~i~~cs~~~ 88 (111)
++....|.+ +|+ +||+.+.... .++.+.+.-+.|+|++||||+|+.+++.+++++.+. +++.+.+.+...
T Consensus 45 ~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~ 123 (152)
T PF13523_consen 45 DPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHED 123 (152)
T ss_dssp TTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT
T ss_pred cCCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcC
Confidence 333344444 565 8999875411 235777888899999999999999999999999987 788777666554
No 44
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.23 E-value=4.5e-06 Score=64.15 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=45.1
Q ss_pred EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEee
Q 033791 31 EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPT 83 (111)
Q Consensus 31 ~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~ 83 (111)
+|++.+... ++.+.|..++|+|++||+|+|+.|++.+++.|++.|++.+.+
T Consensus 246 vG~~~~~~~--~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l 296 (320)
T TIGR01686 246 IGIFVFEKK--EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARL 296 (320)
T ss_pred EEEEEEEec--CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEE
Confidence 899988764 357899999999999999999999999999999999985543
No 45
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.22 E-value=7.2e-06 Score=63.92 Aligned_cols=70 Identities=16% Similarity=0.055 Sum_probs=51.9
Q ss_pred CCCceEEE---eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeecc--chhhhhhh
Q 033791 20 ESKRRFET---EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCS--YVSDTYLP 93 (111)
Q Consensus 20 ~~~~~f~~---~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs--~~~~~~~~ 93 (111)
+....+.+ +|+ +|+..+. ++ .|..++|+|+|||+|+|++||.++++.|+++|+..+-+.+ ... .||+
T Consensus 28 ~~~d~~vv~~~~~~lVg~g~l~----g~--~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~-~fy~ 100 (332)
T TIGR00124 28 APLEIFIAVYEDEEIIGCGGIA----GN--VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYA-ALFE 100 (332)
T ss_pred CCCCEEEEEEECCEEEEEEEEe----cC--EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHH-HHHH
Confidence 33344443 355 8888773 23 4789999999999999999999999999999987554333 334 5888
Q ss_pred hCc
Q 033791 94 RNP 96 (111)
Q Consensus 94 ~~p 96 (111)
+..
T Consensus 101 klG 103 (332)
T TIGR00124 101 YCG 103 (332)
T ss_pred HcC
Confidence 774
No 46
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.20 E-value=4.3e-06 Score=62.52 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=48.6
Q ss_pred Cc-EEEEEEEEec-CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchh----hhhhhhC
Q 033791 29 DK-EAYVEYVVRE-NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVS----DTYLPRN 95 (111)
Q Consensus 29 g~-~G~i~y~~~~-~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~----~~~~~~~ 95 (111)
|+ +||+.+.... +.....|..+.|+|+|||||||+.|+..+++++++.|+..+.+..... ..|+++.
T Consensus 209 ~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~ 281 (292)
T TIGR03448 209 GELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKL 281 (292)
T ss_pred CcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHc
Confidence 44 8887655432 223556777899999999999999999999999999988665544322 2455555
No 47
>PRK10562 putative acetyltransferase; Provisional
Probab=98.16 E-value=5.3e-06 Score=56.11 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=42.7
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
+|. +|++.+... ..+..++|+|+|||+|+|+.|++.+++.+....+.+...-+-.. .|++|+.
T Consensus 56 ~~~~iG~~~~~~~-----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~v~~~N~~s~-~~y~k~G 119 (145)
T PRK10562 56 DGKLLGFVSVLEG-----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSLEVYQKNQRAV-NFYHAQG 119 (145)
T ss_pred CCEEEEEEEEeec-----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEEEEEcCChHHH-HHHHHCC
Confidence 355 899887532 25678999999999999999999998865433222222233333 5777763
No 48
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=98.13 E-value=1.2e-05 Score=56.37 Aligned_cols=63 Identities=19% Similarity=0.328 Sum_probs=46.1
Q ss_pred cCCCceEEE--eCc-EEEEEEEEecC-CcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHH-CCCcEEe
Q 033791 19 NESKRRFET--EDK-EAYVEYVVREN-GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKS-HSMSIIP 82 (111)
Q Consensus 19 ~~~~~~f~~--~g~-~G~i~y~~~~~-~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~-~g~~~i~ 82 (111)
++....|.+ +|. +|++.+...+. +....+ .++|+|+|||+|+|+.+++.+++++.+ .|+..+.
T Consensus 54 ~~~~~~~~i~~~g~~iG~~~~~~~~~~~~~~~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~ 121 (186)
T PRK15130 54 DQSERRFVVECDGEKAGLVELVEINHVHRRAEF-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLY 121 (186)
T ss_pred cccCcEEEEEECCEEEEEEEEEeecCCCCeEEE-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEE
Confidence 444456665 355 89998876532 233444 699999999999999999999999986 4776443
No 49
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.12 E-value=5.3e-06 Score=62.04 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=45.8
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeecc-chhhhhhhhCc
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCS-YVSDTYLPRNP 96 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs-~~~~~~~~~~p 96 (111)
+|+ +|++.+..... ....+..++|+|+|||+|||++|++.+++.+.. ...+..... -.+..|++++.
T Consensus 54 ~~~~vG~~~~~~~~~-~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~~-~~~~~~~~~n~~a~~fy~~~G 122 (292)
T TIGR03448 54 SDPIVGYANLVPARG-TDPAMAELVVHPAHRRRGIGRALIRALLAKGGG-RLRVWAHGDLPAARALASRLG 122 (292)
T ss_pred CCEEEEEEEEEcCCC-CcceEEEEEECHhhcCCCHHHHHHHHHHHhccC-ceEEEEcCCCHHHHHHHHHCC
Confidence 355 89998876532 235788999999999999999999999998752 222222211 12236776664
No 50
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=98.09 E-value=8.2e-06 Score=58.79 Aligned_cols=65 Identities=11% Similarity=0.078 Sum_probs=53.2
Q ss_pred EEEEEEEEecC-CcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhC
Q 033791 31 EAYVEYVVREN-GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 31 ~G~i~y~~~~~-~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~ 95 (111)
+|...++...+ ...++++.+.|+...||+|+|+.||+.+..|+|+.|++.+.+..--.-.|+++-
T Consensus 69 igH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ~~FYe~l 134 (225)
T KOG3397|consen 69 LGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQCRFYESL 134 (225)
T ss_pred eeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccchhhhhhh
Confidence 78887776542 357899999999999999999999999999999999987766655554666544
No 51
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.96 E-value=9.1e-06 Score=48.62 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=30.6
Q ss_pred EEEE-EEECCCCCCccHHHHHHHHHHHHHHHCCCc
Q 033791 46 DLVH-TYVPSSKRGLGLASHLCRAAFNHAKSHSMS 79 (111)
Q Consensus 46 ~i~~-~~V~p~~rgqGig~~L~~~~~~~a~~~g~~ 79 (111)
.+.. ++|+|++||+|+|+.|++.++++++..|+.
T Consensus 82 ~~~~~l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~ 116 (156)
T COG0454 82 ELDARLYVLPEYRGKGIGSALLEAALEWARKRGIS 116 (156)
T ss_pred cceeeEEecchhhccchHHHHHHHHHHHHHHcCce
Confidence 3344 999999999999999999999999998886
No 52
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.95 E-value=5.2e-05 Score=47.97 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=33.9
Q ss_pred EEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEe
Q 033791 45 MDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIP 82 (111)
Q Consensus 45 ~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~ 82 (111)
..|..++|+|++||+|+|+.|+..+.+.+.++|.....
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l 59 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFL 59 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 68999999999999999999999999999999987543
No 53
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=97.91 E-value=1.9e-05 Score=56.40 Aligned_cols=76 Identities=17% Similarity=0.288 Sum_probs=52.5
Q ss_pred eCc-EEEEEEEEecCCcEEE-EEEE--EECCCCCCccHHHHHHHHHHHHHHHCCCc-EEeeccch---hhhhhhhCc-Cc
Q 033791 28 EDK-EAYVEYVVRENGKVMD-LVHT--YVPSSKRGLGLASHLCRAAFNHAKSHSMS-IIPTCSYV---SDTYLPRNP-TW 98 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~-i~~~--~V~p~~rgqGig~~L~~~~~~~a~~~g~~-~i~~cs~~---~~~~~~~~p-~y 98 (111)
+++ +|++.++..-++..+. ..|+ -|.|+.||+|+|+++++.+++.|++.|++ ++.+|..- +++.+++|. .+
T Consensus 77 d~~ivG~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI~~NGGil 156 (174)
T COG3981 77 DGQIVGFINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVIEANGGIL 156 (174)
T ss_pred CCcEEEEEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHHHhcCCEE
Confidence 355 9999999864221111 2343 49999999999999999999999999997 56677542 334556664 34
Q ss_pred ccccc
Q 033791 99 NSIIY 103 (111)
Q Consensus 99 ~~l~~ 103 (111)
.+.+.
T Consensus 157 e~~~~ 161 (174)
T COG3981 157 ENEFF 161 (174)
T ss_pred eEEEc
Confidence 44433
No 54
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.88 E-value=0.0001 Score=51.29 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=42.0
Q ss_pred eCc-EEEEEEEEec-CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHC-CCcEEee
Q 033791 28 EDK-EAYVEYVVRE-NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSH-SMSIIPT 83 (111)
Q Consensus 28 ~g~-~G~i~y~~~~-~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~-g~~~i~~ 83 (111)
+|+ +|++.+...+ ......| ..+++|+|+|||+|++++..+++++.+. |++.+..
T Consensus 75 ~~~~iG~~~l~~~~~~~~~~~i-g~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~ 132 (179)
T PRK10151 75 EDELIGVLSFNRIEPLNKTAYI-GYWLDESHQGQGIISQALQALIHHYAQSGELRRFVI 132 (179)
T ss_pred CCEEEEEEEEEeeccCCCceEE-EEEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEE
Confidence 455 8999887653 2234555 4689999999999999999999999864 6775544
No 55
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.80 E-value=7e-05 Score=61.60 Aligned_cols=66 Identities=9% Similarity=-0.024 Sum_probs=48.1
Q ss_pred EEEEEEEEecC-------CcEEEEEEEE-----------ECCCCCCccHHHHHHHHHHHHHHHCCCcEEee-ccchhhhh
Q 033791 31 EAYVEYVVREN-------GKVMDLVHTY-----------VPSSKRGLGLASHLCRAAFNHAKSHSMSIIPT-CSYVSDTY 91 (111)
Q Consensus 31 ~G~i~y~~~~~-------~~~~~i~~~~-----------V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~-cs~~~~~~ 91 (111)
+||+.++...+ ++...|..+. ++|+|||+|+|++||++++++|++.|++.+.+ +-..+..|
T Consensus 426 ~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~~A~~F 505 (522)
T TIGR01211 426 IGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGIGVREY 505 (522)
T ss_pred EEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCchHHHH
Confidence 89998886432 1234555555 45999999999999999999999999986643 22334467
Q ss_pred hhhCc
Q 033791 92 LPRNP 96 (111)
Q Consensus 92 ~~~~p 96 (111)
+++..
T Consensus 506 Y~klG 510 (522)
T TIGR01211 506 YRKLG 510 (522)
T ss_pred HHHCC
Confidence 77764
No 56
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.76 E-value=0.00022 Score=50.35 Aligned_cols=53 Identities=15% Similarity=0.060 Sum_probs=40.7
Q ss_pred EEEEEEEEecCC-cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHH-CCCcEEee
Q 033791 31 EAYVEYVVRENG-KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKS-HSMSIIPT 83 (111)
Q Consensus 31 ~G~i~y~~~~~~-~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~-~g~~~i~~ 83 (111)
+|.+.+...+.+ ........+|+|+|||||+|+.+++.++++|.+ .|++.+.+
T Consensus 89 iG~i~l~~~~~~~~~~~eig~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~ 143 (194)
T PRK10809 89 IGVANFSNVVRGSFHACYLGYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMA 143 (194)
T ss_pred EEEEEEEeecCCCeeeEEEEEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEE
Confidence 899998765421 122335678999999999999999999999987 48875543
No 57
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=97.73 E-value=0.0001 Score=51.49 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=50.7
Q ss_pred CceEEE--eCc-EEEEEEEEec-CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCC--CcE-Eeeccchhhhhhhh
Q 033791 22 KRRFET--EDK-EAYVEYVVRE-NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHS--MSI-IPTCSYVSDTYLPR 94 (111)
Q Consensus 22 ~~~f~~--~g~-~G~i~y~~~~-~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g--~~~-i~~cs~~~~~~~~~ 94 (111)
.|.+-+ +|+ +||+-+-+.. ......|.++.|+|++||+|+|.+||+.+++.+.+.. ..+ +..-.+.. .|+.+
T Consensus 50 ~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq-~fYa~ 128 (155)
T COG2153 50 RHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQ-DFYAS 128 (155)
T ss_pred ceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHH-HHHHH
Confidence 344544 355 7888766543 1234679999999999999999999999999999874 222 33334444 56665
Q ss_pred C
Q 033791 95 N 95 (111)
Q Consensus 95 ~ 95 (111)
+
T Consensus 129 ~ 129 (155)
T COG2153 129 F 129 (155)
T ss_pred h
Confidence 5
No 58
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.72 E-value=0.00019 Score=47.35 Aligned_cols=50 Identities=12% Similarity=0.220 Sum_probs=41.4
Q ss_pred EEEEEEEEe-cCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHH-HHCCCcEE
Q 033791 31 EAYVEYVVR-ENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHA-KSHSMSII 81 (111)
Q Consensus 31 ~G~i~y~~~-~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a-~~~g~~~i 81 (111)
+|++.+... ...+...+. ++|.|++||+|+|+.++..+++++ ++.|+..+
T Consensus 70 iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i 121 (142)
T PF13302_consen 70 IGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRI 121 (142)
T ss_dssp EEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEE
T ss_pred EEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEE
Confidence 999999543 334677766 889999999999999999999999 56788754
No 59
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.63 E-value=0.00031 Score=47.32 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=40.1
Q ss_pred eCc-EEEEEEEEecC-CcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHH-CCCcEEe
Q 033791 28 EDK-EAYVEYVVREN-GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKS-HSMSIIP 82 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~-~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~-~g~~~i~ 82 (111)
+|. +|++.+...+. .+...+ .++++|.+| +|+|+.++..++++|.+ .+++.+.
T Consensus 59 ~g~~vG~~~~~~~~~~~~~~~~-g~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~ 114 (156)
T TIGR03585 59 ESRPIGVISFTDINLVHKSAFW-GIYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLS 114 (156)
T ss_pred CCEEEEEEEEEecChhhCeEEE-EEEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEE
Confidence 455 89999876542 234444 466999999 99999999999999986 4877553
No 60
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.44 E-value=0.00049 Score=52.21 Aligned_cols=52 Identities=17% Similarity=0.117 Sum_probs=42.9
Q ss_pred Cc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEE
Q 033791 29 DK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 29 g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i 81 (111)
|+ ++...-.... +....|..+|++|+|||||+|..|+..+-+..-+.|.+..
T Consensus 186 ~~iVa~A~t~a~~-~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~ 238 (268)
T COG3393 186 GKIVAKAETAAEN-PAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPC 238 (268)
T ss_pred CcEEEeeeccccC-CcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeE
Confidence 45 6666655443 3678999999999999999999999999999999998744
No 61
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.37 E-value=0.00037 Score=50.80 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=26.7
Q ss_pred cEEEEEEEEECCCCCCccHHHHHHHHHHHHHH
Q 033791 43 KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAK 74 (111)
Q Consensus 43 ~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~ 74 (111)
..+.|.++.|+|++|++|+|++|++.+.++++
T Consensus 89 ~g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~ 120 (196)
T PF13718_consen 89 SGARIVRIAVHPDLQRMGYGSRLLQQLEQYAE 120 (196)
T ss_dssp EEEEEEEEEE-CCC-SSSHHHHHHHHHHHT--
T ss_pred cceeEEEEEEChhhhcCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999994
No 62
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=97.30 E-value=0.0004 Score=42.82 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=26.3
Q ss_pred EEEEEEEEECCCCCCccHHHHHHHHHHHHH
Q 033791 44 VMDLVHTYVPSSKRGLGLASHLCRAAFNHA 73 (111)
Q Consensus 44 ~~~i~~~~V~p~~rgqGig~~L~~~~~~~a 73 (111)
.+-|..++|+|++|++|||+.|++.+.+..
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 467899999999999999999999877653
No 63
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=97.16 E-value=0.00091 Score=52.77 Aligned_cols=52 Identities=6% Similarity=0.043 Sum_probs=48.2
Q ss_pred EEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 44 VMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 44 ~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
+.-|..|.++|+|||+|..++|+.+.+...+++|+.+..+-|+.. ++++|..
T Consensus 70 t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P~s~-~iYrKfG 121 (389)
T COG4552 70 TAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHPFSG-GIYRKFG 121 (389)
T ss_pred ccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEeccCch-hhHhhcc
Confidence 346788999999999999999999999999999999999999999 7999875
No 64
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0044 Score=42.10 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=43.9
Q ss_pred EEEEEEEEecC--CcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHH-CCCcEEeeccchh
Q 033791 31 EAYVEYVVREN--GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKS-HSMSIIPTCSYVS 88 (111)
Q Consensus 31 ~G~i~y~~~~~--~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~-~g~~~i~~cs~~~ 88 (111)
+|.+.+...+. .........+++|+|+|||+|...+..+++++-+ .++..+...++..
T Consensus 80 iG~~~~~~~~~~~~~~~~~ig~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~ 140 (187)
T COG1670 80 IGVIGLSDIDRAANGDLAEIGYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPE 140 (187)
T ss_pred EEEEEEEEeccccccceEEEEEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCC
Confidence 88998886542 1234555667799999999999999999999998 5887665544443
No 65
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.80 E-value=0.0022 Score=41.27 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=36.2
Q ss_pred cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEE
Q 033791 43 KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 43 ~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i 81 (111)
...++.+-|+-|+|||||+.+.++-...+++.++|+.+.
T Consensus 18 qtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y 56 (89)
T PF08444_consen 18 QTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFY 56 (89)
T ss_pred ccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeE
Confidence 467899999999999999999999999999999999875
No 66
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=96.79 E-value=0.0026 Score=46.07 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=33.1
Q ss_pred EEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCC-Cc
Q 033791 44 VMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHS-MS 79 (111)
Q Consensus 44 ~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g-~~ 79 (111)
.+.|..+-|.|.||.+|||+.|++.+.+++.+.. ++
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~ 125 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCR 125 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccc
Confidence 3789999999999999999999999999999887 55
No 67
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.60 E-value=0.015 Score=44.16 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=35.4
Q ss_pred EEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeecc
Q 033791 32 AYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCS 85 (111)
Q Consensus 32 G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs 85 (111)
|..++...+ +.+. ..+.+.|+|||||||+.+..+++..|.++|+.-.=.|.
T Consensus 179 ~~~s~~~~~--~~~E-I~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~ 229 (265)
T PF12746_consen 179 GCSSYFVYE--NGIE-IDIETHPEYRGKGLATAVAAAFILECLENGLYPSWDCH 229 (265)
T ss_dssp EEEEEEEET--TEEE-EEEEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EES
T ss_pred EEEEEEEEC--CEEE-EEEEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCC
Confidence 344455443 2333 35888999999999999999999999999985333453
No 68
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=96.49 E-value=0.038 Score=37.84 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=40.4
Q ss_pred CceEEE---eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHH
Q 033791 22 KRRFET---EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHA 73 (111)
Q Consensus 22 ~~~f~~---~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a 73 (111)
.++++. |++ +|-+.+... +..+.|.++.|.|-=|++|+|..|++.+...+
T Consensus 37 ~~~l~aArFNdRlLgAv~v~~~--~~~~~L~~l~VRevTRrRGVG~yLlee~~rq~ 90 (128)
T PF12568_consen 37 GHRLFAARFNDRLLGAVKVTIS--GQQAELSDLCVREVTRRRGVGLYLLEEVLRQL 90 (128)
T ss_dssp SEEEEEEEETTEEEEEEEEEEE--TTEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS
T ss_pred CCeEEEEEechheeeeEEEEEc--CcceEEeeEEEeeccccccHHHHHHHHHHHHC
Confidence 556665 677 788888775 36899999999999999999999999998887
No 69
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=96.24 E-value=0.014 Score=41.65 Aligned_cols=54 Identities=24% Similarity=0.183 Sum_probs=39.6
Q ss_pred Cc-EEEEEEEEec----CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHC-CCcEEe
Q 033791 29 DK-EAYVEYVVRE----NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSH-SMSIIP 82 (111)
Q Consensus 29 g~-~G~i~y~~~~----~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~-g~~~i~ 82 (111)
|+ +||+...... +....+|..+.|.-+||+.|||++||..+.....+. +.+-+.
T Consensus 51 gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvs 110 (193)
T KOG3235|consen 51 GKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVS 110 (193)
T ss_pred CcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEE
Confidence 45 8888655432 234679999999999999999999999977665553 444443
No 70
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=96.20 E-value=0.078 Score=34.57 Aligned_cols=57 Identities=11% Similarity=-0.055 Sum_probs=45.0
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccc
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSY 86 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~ 86 (111)
+|+ +|+...-.. ++.+......++|+++..+.|..|+..++++|.++|++.+-...-
T Consensus 79 ~g~~va~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 79 GGEPVAFALGFRH--GGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred CCEEEEEEEEEEE--CCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 455 555544433 357788888899999999999999999999999999988755443
No 71
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.08 E-value=0.011 Score=38.65 Aligned_cols=66 Identities=21% Similarity=0.032 Sum_probs=45.2
Q ss_pred CcEEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhC
Q 033791 29 DKEAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 29 g~~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~ 95 (111)
+..|.+.+...+.+.+..|..+.|.++.||+|+|+.|++.+.+.....=++.-...+..+ -||++.
T Consensus 19 ~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~~~L~Wrsr~~n~~n~-Wyf~~s 84 (99)
T cd04265 19 GYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDFPKLFWRSRSTNPINP-WYFKRC 84 (99)
T ss_pred CCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhCCceEEEeCCCCcccc-eEEEee
Confidence 334555555432136899999999999999999999999888765544444444555555 466554
No 72
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=95.95 E-value=0.026 Score=39.19 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=36.6
Q ss_pred cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEE
Q 033791 43 KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 43 ~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i 81 (111)
+.+.|+++.|...-||+|+|+.|.+.+.++|+..|+..+
T Consensus 83 ~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~ 121 (167)
T COG3818 83 NFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYL 121 (167)
T ss_pred ceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceE
Confidence 678999999999999999999999999999999998755
No 73
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.76 E-value=0.0053 Score=52.63 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=29.8
Q ss_pred EEEEEEEEECCCCCCccHHHHHHHHHHHHHH
Q 033791 44 VMDLVHTYVPSSKRGLGLASHLCRAAFNHAK 74 (111)
Q Consensus 44 ~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~ 74 (111)
-|.|.++.|+|++|++|||++|++.+.++|+
T Consensus 531 G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~ 561 (758)
T COG1444 531 GWRIVRIAVHPELQRMGIGSRLLALLIEEAR 561 (758)
T ss_pred eeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999997
No 74
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=95.56 E-value=0.024 Score=37.06 Aligned_cols=66 Identities=21% Similarity=0.060 Sum_probs=46.8
Q ss_pred CcEEEEEEEEec-CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhC
Q 033791 29 DKEAYVEYVVRE-NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 29 g~~G~i~y~~~~-~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~ 95 (111)
+..|.+.++..+ ++.+..|..+.|.|+.||+|+|..|++.+.+.-.+.=++.-...+..+ -||+|.
T Consensus 18 ~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~~~L~Wrsr~~n~~n~-Wyf~rs 84 (99)
T cd04264 18 GYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDFPKLFWRSRKTNPINP-WYFKRS 84 (99)
T ss_pred CceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhCCceEEEeCCCCcccc-eEEEee
Confidence 346666555532 236899999999999999999999999988765444444445566566 566654
No 75
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=95.53 E-value=0.044 Score=39.77 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=44.9
Q ss_pred EEEcCCCceEEE----eCc----EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEe
Q 033791 16 IVWNESKRRFET----EDK----EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIP 82 (111)
Q Consensus 16 i~~~~~~~~f~~----~g~----~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~ 82 (111)
+..|.+.-.|++ |+. +||.+=..... ...-|..+-|-|.||++|+|+.||+..-+.++..|..--|
T Consensus 45 lyydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~-~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~~~G~P 118 (188)
T PF01853_consen 45 LYYDVDPFLFYVLTEKDDDGFHIVGYFSKEKESW-DNNNLSCILTLPPYQRKGYGRFLIDFSYELSRREGKIGGP 118 (188)
T ss_dssp CTT-STTEEEEEEEEEETTEEEEEEEEEEESS-T-T-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTTS-BEE
T ss_pred EEeecCceEEEEEEEecCccceeEEEEEEEeccc-CCeeEeehhhcchhhhcchhhhhhhhHHHHhhccCcCCCC
Confidence 445565666765 221 67666544332 3467889999999999999999999999999988764444
No 76
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=94.85 E-value=0.091 Score=40.48 Aligned_cols=63 Identities=11% Similarity=0.111 Sum_probs=46.6
Q ss_pred EEEcCCCceEEE----e--Cc--EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCc
Q 033791 16 IVWNESKRRFET----E--DK--EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMS 79 (111)
Q Consensus 16 i~~~~~~~~f~~----~--g~--~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~ 79 (111)
+..|-+.-.|++ | |. +||.+=.+... ...-|..+-|-|.||++|+|+.||+..-+.++..|..
T Consensus 120 lyyDV~~FlFYVl~e~d~~g~h~vGYFSKEK~s~-~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg~~ 190 (290)
T PLN03238 120 LYYDVDPFLFYVMTEVDDHGSHIVGYFSKEKVSA-EDYNLACILTLPPYQRKGYGKFLISFAYELSKREGKV 190 (290)
T ss_pred ccccccceEEEEEEEecCCCcEEEEEeceecccc-CCCcEEEEEecChhhhccHhHhHHHHHhHHhhccCCC
Confidence 566776677776 2 22 67766554431 1246788999999999999999999999999988643
No 77
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=94.27 E-value=0.087 Score=42.21 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=45.9
Q ss_pred EEEcCCCceEEE---eCcEEEEEEEEe-cC-CcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCC
Q 033791 16 IVWNESKRRFET---EDKEAYVEYVVR-EN-GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSM 78 (111)
Q Consensus 16 i~~~~~~~~f~~---~g~~G~i~y~~~-~~-~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~ 78 (111)
+..|-+.-.|++ .|..|++.|-.. .. ....-|..+-|.|.||++|+|+.||+.--+..|..|.
T Consensus 227 LYyDvdpFlFYVlte~d~~G~VGYFSKEK~s~~~yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E~~ 294 (396)
T KOG2747|consen 227 LYYDVDPFLFYVLTECDSYGCVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYELSRREGK 294 (396)
T ss_pred eEEeccceEEEEEEecCCcceeeeeccccccccccceeeeeecChhhhcccchhhhhhhhhhhcccCc
Confidence 677777778886 355565554332 11 1235688899999999999999999998888887654
No 78
>PLN03239 histone acetyltransferase; Provisional
Probab=94.24 E-value=0.12 Score=40.76 Aligned_cols=62 Identities=10% Similarity=0.087 Sum_probs=45.6
Q ss_pred EEEcCCCceEEE----e--Cc--EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCC
Q 033791 16 IVWNESKRRFET----E--DK--EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSM 78 (111)
Q Consensus 16 i~~~~~~~~f~~----~--g~--~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~ 78 (111)
+..|-+.-.|++ | |. +||.+=.+... ...-|..+-|-|.||++|+|+.||+..-+.++..|.
T Consensus 178 lyyDV~~FlFYVl~e~D~~g~h~vGYFSKEK~s~-~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg~ 247 (351)
T PLN03239 178 LYFDVDPFLFYVLCEVDERGFHPVGYYSKEKYSD-VGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEEK 247 (351)
T ss_pred eeccccceEEEEEEEecCCceEEEEEeeecccCC-CCCceEEEEecChhhhcchhhhhHhhhhHhhhhcCC
Confidence 566776667765 2 22 66665444321 123688999999999999999999999999998764
No 79
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=94.00 E-value=0.15 Score=34.93 Aligned_cols=68 Identities=9% Similarity=0.092 Sum_probs=45.2
Q ss_pred eCc-EEEEEEEEec---CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHC-CCcEEeeccchhhhhhhhCc
Q 033791 28 EDK-EAYVEYVVRE---NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSH-SMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 28 ~g~-~G~i~y~~~~---~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~-g~~~i~~cs~~~~~~~~~~p 96 (111)
+|+ +||+-.-... -.--+-+..+++-..|||+|+|++...++...++.. -+-.++...-+. +|+++-|
T Consensus 45 ~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~g~w~Va~i~EN~PA~-~fwK~~~ 117 (143)
T COG5628 45 GGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAWGVWQVATVRENTPAR-AFWKRVA 117 (143)
T ss_pred CCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhhceEEEEEeccCChhH-HHHHhhh
Confidence 666 8988654321 112367888999999999999999999988776544 222334444444 4666664
No 80
>PTZ00064 histone acetyltransferase; Provisional
Probab=93.69 E-value=0.14 Score=42.32 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=46.1
Q ss_pred EEEcCCCceEEE----e--Cc--EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCC
Q 033791 16 IVWNESKRRFET----E--DK--EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSM 78 (111)
Q Consensus 16 i~~~~~~~~f~~----~--g~--~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~ 78 (111)
+..|.+.-.|++ | |. +||.+=.+... ...-|-.+-|-|.||++|+|+.||+..-+.++..|.
T Consensus 349 LYyDVdpFlFYVLtE~D~~G~HiVGYFSKEK~S~-~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEgk 418 (552)
T PTZ00064 349 LQYDVEPFLFYIVTEVDEEGCHIVGYFSKEKVSL-LHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEGK 418 (552)
T ss_pred ccccccceEEEEEEEecCCCcEEEEEecccccCc-ccCceEEEEecchhhhcchhhhhhhhhhhhhhhcCC
Confidence 566776677776 2 22 67766544321 124688999999999999999999999999998765
No 81
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=93.55 E-value=0.32 Score=35.08 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=26.0
Q ss_pred CcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHC
Q 033791 42 GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSH 76 (111)
Q Consensus 42 ~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~ 76 (111)
+....+...|++|+|||+|+++.+-+.+.+..+..
T Consensus 76 ~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~~ 110 (181)
T PF06852_consen 76 KPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDSV 110 (181)
T ss_pred CCeEEEeeeeeCCcccCcchHHHHHHHHHHHhccC
Confidence 45788899999999999999975544444544443
No 82
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=92.96 E-value=0.16 Score=36.12 Aligned_cols=49 Identities=18% Similarity=0.113 Sum_probs=36.9
Q ss_pred EEEEEEEEec--CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCc
Q 033791 31 EAYVEYVVRE--NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMS 79 (111)
Q Consensus 31 ~G~i~y~~~~--~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~ 79 (111)
-||+-=.... .....++..+.|.|+||+.|+|+.||+.+.+-....+.-
T Consensus 54 mgyimgk~Eg~~~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~ 104 (173)
T KOG3234|consen 54 MGYIMGKVEGKDTEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAY 104 (173)
T ss_pred EEEEeeeccccCcceeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4666544332 223468888999999999999999999999888876443
No 83
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=92.95 E-value=0.1 Score=37.15 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=37.6
Q ss_pred CcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCC--CcEEeec--cchhhhhhhhC
Q 033791 42 GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHS--MSIIPTC--SYVSDTYLPRN 95 (111)
Q Consensus 42 ~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g--~~~i~~c--s~~~~~~~~~~ 95 (111)
+..+.|..+.|.|+||.||+|..|+..-++..-.+- -+.+..| |.+. |+++.
T Consensus 99 g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvP--FYEr~ 154 (190)
T KOG4144|consen 99 GHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVP--FYERF 154 (190)
T ss_pred CcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccc--hhHhc
Confidence 345899999999999999999999999888776653 2333333 3433 55554
No 84
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=92.86 E-value=0.14 Score=41.74 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=47.1
Q ss_pred EEEcCCCceEEE----e--Cc--EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCc
Q 033791 16 IVWNESKRRFET----E--DK--EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMS 79 (111)
Q Consensus 16 i~~~~~~~~f~~----~--g~--~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~ 79 (111)
+..|-+.-.|++ | |. +||.+=.+... ...-|..+-|-|.||++|+|+.||+..-+..+..|..
T Consensus 271 lyydV~~FlFYvl~e~d~~g~h~vGyFSKEk~s~-~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg~~ 341 (450)
T PLN00104 271 LYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSE-EDYNLACILTLPPYQRKGYGKFLIAFSYELSKREGKV 341 (450)
T ss_pred eeccccceEEEEEEEecCCCcEEEEEecccccCc-CCCceEEEEecchhhhcchhheehhheehhhhccCCC
Confidence 667777777776 2 32 77776554432 1246889999999999999999999999999987643
No 85
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=92.84 E-value=0.41 Score=32.61 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=38.9
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEe
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIP 82 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~ 82 (111)
+|+ +|....-..++ .+.-.-++-||++....+|+..+=.-+++|++.|.+-+-
T Consensus 47 ~~kLiav~v~D~l~~--glSaVY~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 47 DGKLIAVAVVDILPD--GLSAVYTFYDPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred CCeEEEEEEeecccc--hhhheeeeeCCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 566 55544433332 244445667999999999999999999999999998553
No 86
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=92.73 E-value=0.11 Score=35.19 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=34.3
Q ss_pred EEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCc--EEeeccchhhhhhhhCcCcc
Q 033791 46 DLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMS--IIPTCSYVSDTYLPRNPTWN 99 (111)
Q Consensus 46 ~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~--~i~~cs~~~~~~~~~~p~y~ 99 (111)
-|...||+++.|++|+|++|.+..++.-.-.-.. +---.+-.. .|++||=...
T Consensus 48 cvLDFyVhes~QR~G~Gk~LF~~ML~~e~~~p~~~a~DrPS~Kll-~Fl~Khy~L~ 102 (120)
T PF05301_consen 48 CVLDFYVHESRQRRGYGKRLFDHMLQEENVSPHQLAIDRPSPKLL-SFLKKHYGLQ 102 (120)
T ss_pred eeeeEEEEeceeccCchHHHHHHHHHHcCCCcccceecCCcHHHH-HHHHHhcCCC
Confidence 5677899999999999999999988754433211 111122233 4777774333
No 87
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=91.80 E-value=0.36 Score=34.29 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=29.7
Q ss_pred EEEEEEEEECCCCCCccHHHHHHHHHHHHHHHC
Q 033791 44 VMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSH 76 (111)
Q Consensus 44 ~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~ 76 (111)
+.+++-+.-.|.-||+|+|...+...+.||...
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~ 139 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSV 139 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHH
Confidence 457777888999999999999999999999876
No 88
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=91.26 E-value=0.23 Score=33.94 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=35.6
Q ss_pred CCccHHHHHHHHHHHHHHHCCCcEEe--eccchhhhhhhhCcCccccccc
Q 033791 57 RGLGLASHLCRAAFNHAKSHSMSIIP--TCSYVSDTYLPRNPTWNSIIYS 104 (111)
Q Consensus 57 rgqGig~~L~~~~~~~a~~~g~~~i~--~cs~~~~~~~~~~p~y~~l~~~ 104 (111)
+..|+++-|+..+++.|+++|++++. .+++-. ...++||+|.-+-..
T Consensus 37 ~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~-~~~~~HPeW~~~~~~ 85 (132)
T PF14871_consen 37 RHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDE-DAAERHPEWFVRDAD 85 (132)
T ss_pred CCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecCh-HHHHhCCceeeECCC
Confidence 34555689999999999999999763 455444 667899999876554
No 89
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=90.98 E-value=1.2 Score=33.42 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=40.5
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEee
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPT 83 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~ 83 (111)
+|+ +|....-..++ .+.-.-+|-||++-..++|+..+-.-+++|++.|.+-+.+
T Consensus 152 ~g~LiaVav~D~l~d--~lSAVY~FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y~YL 206 (240)
T PRK01305 152 DGKLVAVAVTDVLDD--GLSAVYTFYDPDEEHRSLGTFAILWQIELAKRLGLPYVYL 206 (240)
T ss_pred CCeEEEEEEEeccCC--ceeeEEEeeCCCccccCCHHHHHHHHHHHHHHcCCCeEee
Confidence 565 55554444433 2444567889999999999999999999999999886544
No 90
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=90.53 E-value=0.66 Score=36.25 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=33.1
Q ss_pred EEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEE
Q 033791 46 DLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 46 ~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i 81 (111)
.|..+.|+|++||-|++-+|+.++++.|-+.|..-+
T Consensus 58 vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hL 93 (352)
T COG3053 58 VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHL 93 (352)
T ss_pred eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceE
Confidence 678899999999999999999999999999998744
No 91
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.86 E-value=0.72 Score=34.76 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=27.8
Q ss_pred CcEEEEEEEEECCCCCCccHHHHHHHHHHHHH
Q 033791 42 GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHA 73 (111)
Q Consensus 42 ~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a 73 (111)
+..+-|..+||+++.|++|-|.+|++..++.-
T Consensus 106 ~e~lcILDFyVheS~QR~G~G~~lfdyMl~kE 137 (264)
T KOG4601|consen 106 EEALCILDFYVHESEQRSGNGFKLFDYMLKKE 137 (264)
T ss_pred cCCceEEEEEeehhhhhcCchHHHHHHHHHhc
Confidence 35678899999999999999999999987643
No 92
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=89.54 E-value=0.4 Score=39.43 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=33.0
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHCCCcEEee--ccchhhhhhhhC
Q 033791 53 PSSKRGLGLASHLCRAAFNHAKSHSMSIIPT--CSYVSDTYLPRN 95 (111)
Q Consensus 53 ~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~--cs~~~~~~~~~~ 95 (111)
+..+|.+|+|+.||+.+...|++.+...+.. ..-+. .|+++.
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~R-eYy~k~ 502 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVR-EYYRKL 502 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHH-HHHHHh
Confidence 4679999999999999999999998775544 33445 677654
No 93
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=88.91 E-value=0.54 Score=38.75 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=32.2
Q ss_pred EEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCc
Q 033791 45 MDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMS 79 (111)
Q Consensus 45 ~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~ 79 (111)
..|-++.|+|+||+-|||..-+..+++|.+++-.+
T Consensus 242 ariarvvvhpdyr~dglg~~sv~~a~ewI~eRriP 276 (593)
T COG2401 242 ARIARVVVHPDYRADGLGQLSVIAALEWIIERRIP 276 (593)
T ss_pred hheeEEEeccccccCccchhHHHHHHHHHHHhhCh
Confidence 57889999999999999999999999999998665
No 94
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=88.12 E-value=1.6 Score=31.30 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=38.0
Q ss_pred CcEEEEEEEEECCCCCC------ccHHHHHHHHHHHHHHHCCCc-EEeeccchhhhhhhhC
Q 033791 42 GKVMDLVHTYVPSSKRG------LGLASHLCRAAFNHAKSHSMS-IIPTCSYVSDTYLPRN 95 (111)
Q Consensus 42 ~~~~~i~~~~V~p~~rg------qGig~~L~~~~~~~a~~~g~~-~i~~cs~~~~~~~~~~ 95 (111)
.++|++.+++|+++.++ .-+...|+..++++|.++|++ ++..++..-...+.+.
T Consensus 88 ~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~r~ 148 (182)
T PF00765_consen 88 PDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVDPAMERILRRA 148 (182)
T ss_dssp TTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHHHC
T ss_pred CcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHHHc
Confidence 47999999999998543 247889999999999999998 4444443333455554
No 95
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=88.03 E-value=1.2 Score=33.22 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=39.4
Q ss_pred CcEEEEEEEEECCCCCCc-c---------------------------HHHHHHHHHHHHHHHCCCcE-Eeeccchhhhhh
Q 033791 42 GKVMDLVHTYVPSSKRGL-G---------------------------LASHLCRAAFNHAKSHSMSI-IPTCSYVSDTYL 92 (111)
Q Consensus 42 ~~~~~i~~~~V~p~~rgq-G---------------------------ig~~L~~~~~~~a~~~g~~~-i~~cs~~~~~~~ 92 (111)
+.+|++.++.|+|++|++ | +...|+..++++|..+|++- +.+++..-...+
T Consensus 109 ~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l 188 (241)
T TIGR03694 109 SRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLL 188 (241)
T ss_pred CceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHH
Confidence 368999999999999974 1 56789999999999999984 333333222344
Q ss_pred hhC
Q 033791 93 PRN 95 (111)
Q Consensus 93 ~~~ 95 (111)
.+.
T Consensus 189 ~r~ 191 (241)
T TIGR03694 189 SRF 191 (241)
T ss_pred HHh
Confidence 444
No 96
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=86.78 E-value=2.8 Score=29.83 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=38.0
Q ss_pred EEEEEEEEec----C--CcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCC
Q 033791 31 EAYVEYVVRE----N--GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSM 78 (111)
Q Consensus 31 ~G~i~y~~~~----~--~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~ 78 (111)
+|||+-.+.. + -+..+|+-+.|++.+|.++++-.|+.++-..+..+|+
T Consensus 91 vgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI 144 (162)
T PF01233_consen 91 VGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGI 144 (162)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT-
T ss_pred EEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCc
Confidence 7888755432 1 1467889999999999999999999999999998886
No 97
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=82.44 E-value=6.3 Score=28.68 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=33.1
Q ss_pred CcEEEEEEEEECCCCC---Ccc----HHHHHHHHHHHHHHHCCCcEE
Q 033791 42 GKVMDLVHTYVPSSKR---GLG----LASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 42 ~~~~~i~~~~V~p~~r---gqG----ig~~L~~~~~~~a~~~g~~~i 81 (111)
+.+|++.++.|+++++ +.+ +...|+..+.+++..+|++-+
T Consensus 97 ~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~ 143 (207)
T PRK13834 97 PAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEI 143 (207)
T ss_pred CCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEE
Confidence 4699999999999863 222 667899999999999999854
No 98
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=81.86 E-value=2.3 Score=34.08 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=27.6
Q ss_pred cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHH
Q 033791 43 KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKS 75 (111)
Q Consensus 43 ~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~ 75 (111)
-...|..+-+.|.|||+|+|..|++.+......
T Consensus 216 ~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~ 248 (403)
T KOG2696|consen 216 IRPRISQMLILPPFQGKGLGSQLYEAIARDYLE 248 (403)
T ss_pred hhhhhheeEEeccccCCchHHHHHHHHHHhhcc
Confidence 456788899999999999999999999844443
No 99
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=81.35 E-value=2.5 Score=30.04 Aligned_cols=64 Identities=22% Similarity=0.107 Sum_probs=43.6
Q ss_pred EEEEEEEE-ecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhC
Q 033791 31 EAYVEYVV-RENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 31 ~G~i~y~~-~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~ 95 (111)
+|.++... ...+.+..|..+.|.++.+|.|++..+...+.+.-...=++.-...+..+ .||+|-
T Consensus 74 ~AIVt~e~~~~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d~p~L~Wrsr~~n~~~~-Wyf~rs 138 (170)
T PF04768_consen 74 AAIVTPEGPDSNGPVPYLDKFAVSKSAQGSGVADNVFNAIRKDFPKLFWRSREDNPNNK-WYFERS 138 (170)
T ss_dssp EEEEEEE-SCTCTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH-SSEEEEEETT-TTHH-HHHHH-
T ss_pred EEEEEecCCCCCCCCeEEEEEEecchhhhcCHHHHHHHHHHHhccceEEEecCCCCccc-EEEEee
Confidence 44554433 23446899999999999999999999999987665554455556677777 577765
No 100
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=79.30 E-value=1.8 Score=34.81 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=30.1
Q ss_pred CCCCCccHHHHHHHHHHHHHHHC-CCcEEe--eccchhhhhhhhC
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSH-SMSIIP--TCSYVSDTYLPRN 95 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~-g~~~i~--~cs~~~~~~~~~~ 95 (111)
..||.||+|..||+++...|++. |-..+. ...-+. +|+.+-
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR-~YY~kl 540 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTR-NYYRKL 540 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchH-HHHHhh
Confidence 46999999999999999999975 554443 344445 566654
No 101
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.14 E-value=8.2 Score=28.55 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=33.2
Q ss_pred cEEEEEEEEECC--CCCCcc----HHHHHHHHHHHHHHHCCCcEE
Q 033791 43 KVMDLVHTYVPS--SKRGLG----LASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 43 ~~~~i~~~~V~p--~~rgqG----ig~~L~~~~~~~a~~~g~~~i 81 (111)
++|+..+.+||+ .-++.| ++..|+..+++++..+|++.+
T Consensus 97 ~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~I 141 (209)
T COG3916 97 GVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGI 141 (209)
T ss_pred CeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceE
Confidence 799999999998 555555 689999999999999999844
No 102
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=78.24 E-value=7 Score=25.92 Aligned_cols=53 Identities=19% Similarity=0.114 Sum_probs=37.5
Q ss_pred CcEEEEEEEEECCCCCC-ccHHHHHHHHHHHHHHH-CCCcEEeeccchhhhhhhhC
Q 033791 42 GKVMDLVHTYVPSSKRG-LGLASHLCRAAFNHAKS-HSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 42 ~~~~~i~~~~V~p~~rg-qGig~~L~~~~~~~a~~-~g~~~i~~cs~~~~~~~~~~ 95 (111)
+.+..|..+.|.++-+| .|++..+.+.+.+.-.. .=++.-...|..+ -||+|.
T Consensus 37 ~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~~fp~~L~Wrsr~~n~~n~-Wyfers 91 (108)
T cd04266 37 EKIAYLDKFAVLPKAQGSDGIADILFNAMLDGFPNELIWRSRKDNPVNK-WYFERS 91 (108)
T ss_pred CCceEEEEEEEccccccccchHHHHHHHHHHcCCCceEEEeCCCCcccc-eEEeee
Confidence 46789999999999997 89999999988763221 2233334555555 566654
No 103
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=76.40 E-value=3.9 Score=32.84 Aligned_cols=52 Identities=21% Similarity=0.454 Sum_probs=39.9
Q ss_pred EEEEEECCCCCCccHH----------------------HHHHHHHHHHHHHCCCcEEeeccc--------hhhhhhhhCc
Q 033791 47 LVHTYVPSSKRGLGLA----------------------SHLCRAAFNHAKSHSMSIIPTCSY--------VSDTYLPRNP 96 (111)
Q Consensus 47 i~~~~V~p~~rgqGig----------------------~~L~~~~~~~a~~~g~~~i~~cs~--------~~~~~~~~~p 96 (111)
.+.+.+|+.+-|-|.- ..+++.+...++..|.=+..+|+. +. .|+++||
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~-~~l~~~~ 404 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIE-QFLARHP 404 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHH-HHHHhCC
Confidence 5778899988776652 466777777777777778899999 45 7889999
Q ss_pred Ccc
Q 033791 97 TWN 99 (111)
Q Consensus 97 ~y~ 99 (111)
++.
T Consensus 405 ~~~ 407 (434)
T PRK14901 405 DWK 407 (434)
T ss_pred CcE
Confidence 876
No 104
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=75.36 E-value=4.8 Score=32.20 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=41.9
Q ss_pred EEEEEEECCCCCCccHH----------------------HHHHHHHHHHHHHCCCcEEeeccch--------hhhhhhhC
Q 033791 46 DLVHTYVPSSKRGLGLA----------------------SHLCRAAFNHAKSHSMSIIPTCSYV--------SDTYLPRN 95 (111)
Q Consensus 46 ~i~~~~V~p~~rgqGig----------------------~~L~~~~~~~a~~~g~~~i~~cs~~--------~~~~~~~~ 95 (111)
..+.+++|+.+=|-|.- ..|++.+....+..|.=++.+||+. . .|+++|
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~-~~l~~~ 387 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIK-AFLQEH 387 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHH-HHHHhC
Confidence 36788999988888863 4677777777777888899999993 4 688999
Q ss_pred cCcc
Q 033791 96 PTWN 99 (111)
Q Consensus 96 p~y~ 99 (111)
|.+.
T Consensus 388 ~~~~ 391 (426)
T TIGR00563 388 PDFP 391 (426)
T ss_pred CCCe
Confidence 9764
No 105
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=73.42 E-value=4.2 Score=35.56 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=30.8
Q ss_pred EEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCc
Q 033791 45 MDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMS 79 (111)
Q Consensus 45 ~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~ 79 (111)
..|.++.|+|+|++.|+|+.-++-+.++-..+...
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~~~~ 649 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGKFTS 649 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHHhccCCC
Confidence 57899999999999999999999999998776543
No 106
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=72.61 E-value=8 Score=28.89 Aligned_cols=53 Identities=23% Similarity=0.346 Sum_probs=40.2
Q ss_pred EEEEEECCCCCCccH----------------------HHHHHHHHHHHHHHCCCcEEeeccchh-------hhhhhhCcC
Q 033791 47 LVHTYVPSSKRGLGL----------------------ASHLCRAAFNHAKSHSMSIIPTCSYVS-------DTYLPRNPT 97 (111)
Q Consensus 47 i~~~~V~p~~rgqGi----------------------g~~L~~~~~~~a~~~g~~~i~~cs~~~-------~~~~~~~p~ 97 (111)
.+.+.+||.+-|.|+ -..+++.+....+..|.-+..+||+.. +.|+++||.
T Consensus 141 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~ 220 (264)
T TIGR00446 141 FDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPD 220 (264)
T ss_pred CCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCC
Confidence 678999999888773 345777777777777877889999854 456778887
Q ss_pred cc
Q 033791 98 WN 99 (111)
Q Consensus 98 y~ 99 (111)
+.
T Consensus 221 ~~ 222 (264)
T TIGR00446 221 VV 222 (264)
T ss_pred cE
Confidence 64
No 107
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=72.22 E-value=7.7 Score=29.34 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=34.2
Q ss_pred CCcEEEEEE-EEECCCCCCccHHHHHHHHHHHHHHHCCCcEE
Q 033791 41 NGKVMDLVH-TYVPSSKRGLGLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 41 ~~~~~~i~~-~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i 81 (111)
.++.+.-.| +.|.|++||.|+|-.|=.+=-+.|++.|+..+
T Consensus 70 ~g~~y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~~~G~tli 111 (266)
T COG3375 70 GGSLYLYSHMLGVREEVKGSGLGVALKMKQRERALSMGYTLI 111 (266)
T ss_pred CCceeeeeeehhccccccccchhhhhHHHHHHHHHhcCeeeE
Confidence 345555556 77999999999999998888999999999865
No 108
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=72.07 E-value=6.3 Score=31.99 Aligned_cols=66 Identities=14% Similarity=0.047 Sum_probs=46.4
Q ss_pred EEEEEEEEecCCcEEEEEEEEECCCCCC-ccHHHHHHHHHHHHHH-HCCCcEEeeccchhhhhhhhCcC
Q 033791 31 EAYVEYVVRENGKVMDLVHTYVPSSKRG-LGLASHLCRAAFNHAK-SHSMSIIPTCSYVSDTYLPRNPT 97 (111)
Q Consensus 31 ~G~i~y~~~~~~~~~~i~~~~V~p~~rg-qGig~~L~~~~~~~a~-~~g~~~i~~cs~~~~~~~~~~p~ 97 (111)
++.++|.-..++++..|+.++|.+..|| -||+..+..-..+.-- +.=|+--...+..+ .||++.-.
T Consensus 387 ~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~vfniM~e~fP~eL~WRSR~~N~vNk-wYf~rSvg 454 (495)
T COG5630 387 AAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDAVFNIMREEFPNELFWRSRHNNQVNK-WYFARSVG 454 (495)
T ss_pred eEEEEeeccCCCCCcceeeeeccccccccchHHHHHHHHHHHhCcHhhhhhhcccCcchh-eeeehhhe
Confidence 5566665334458899999999999999 9999998887766554 33444444555556 57776643
No 109
>PRK06186 hypothetical protein; Validated
Probab=71.79 E-value=7.3 Score=29.09 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=34.8
Q ss_pred EEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccch
Q 033791 46 DLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYV 87 (111)
Q Consensus 46 ~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~ 87 (111)
.++.+.|+|.|-.+|+-.++.. +++|++++++.+..|=-.
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~a--i~~Are~~iP~LGIClGm 92 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTA--IRFARENGIPFLGTCGGF 92 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHH--HHHHHHcCCCeEeechhh
Confidence 3477899999999999999765 899999999999999763
No 110
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=70.20 E-value=13 Score=24.13 Aligned_cols=53 Identities=8% Similarity=-0.029 Sum_probs=38.6
Q ss_pred CcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhC
Q 033791 42 GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 42 ~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~ 95 (111)
+.+..|..+.|.+.-++.|++..+.+.+.+.-.+.=++.-...|..+ -||+|.
T Consensus 31 ~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d~~~L~Wrsr~~n~~n~-Wyf~rs 83 (98)
T cd03173 31 NSIPYLDKFAVSDHLWLNNVTDNIFNLIRKDFPSLLWRVRENDANLK-WYFSKS 83 (98)
T ss_pred CCCEEEEEEEEcccccccCHHHHHHHHHHhhCCeeEEEeCCCCCccc-eEEEee
Confidence 36789999999999999999999999887664433344445555555 466543
No 111
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=70.02 E-value=2.2 Score=33.96 Aligned_cols=69 Identities=10% Similarity=0.102 Sum_probs=45.3
Q ss_pred EEEcCCCceEEE--e-Cc-----EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCC---CcEEeec
Q 033791 16 IVWNESKRRFET--E-DK-----EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHS---MSIIPTC 84 (111)
Q Consensus 16 i~~~~~~~~f~~--~-g~-----~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g---~~~i~~c 84 (111)
+.-|-+.-.|++ . |. +||.+=..... .-.-|..+-+-|.||++|+|+.||+.--...+..| -+-.|+.
T Consensus 227 LYyDVDpflFYvl~~~~~~~~h~vGyFSKEK~S~-~~yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~~E~k~gsPEKPLS 305 (395)
T COG5027 227 LYYDVDPFLFYVLTERGDTGCHLVGYFSKEKESE-QDYNLACILTLPPYQRRGYGKLLIDFSYLLSQKEGKVGSPEKPLS 305 (395)
T ss_pred eEEeccceEEEEEEEcCCcceeeeeeechhhccc-ccCceEEEEecChhHhcccceEeeeeeeecccccccCCCCCCCCc
Confidence 556666667776 2 22 45555444332 23578899999999999999999998766666543 3344444
Q ss_pred c
Q 033791 85 S 85 (111)
Q Consensus 85 s 85 (111)
+
T Consensus 306 d 306 (395)
T COG5027 306 D 306 (395)
T ss_pred h
Confidence 3
No 112
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=65.68 E-value=8.6 Score=30.99 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=40.5
Q ss_pred EEEEEECCCCCCccHH----------------------HHHHHHHHHHHHHCCCcEEeeccchh-------hhhhhhCcC
Q 033791 47 LVHTYVPSSKRGLGLA----------------------SHLCRAAFNHAKSHSMSIIPTCSYVS-------DTYLPRNPT 97 (111)
Q Consensus 47 i~~~~V~p~~rgqGig----------------------~~L~~~~~~~a~~~g~~~i~~cs~~~-------~~~~~~~p~ 97 (111)
.+.+.+|+.+=|-|.- ..+++.+....+.-|.-+..+||... +.|+++||.
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~ 387 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKD 387 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCC
Confidence 5788899988777753 55677777777777888889999873 268889997
Q ss_pred cc
Q 033791 98 WN 99 (111)
Q Consensus 98 y~ 99 (111)
+.
T Consensus 388 ~~ 389 (431)
T PRK14903 388 AE 389 (431)
T ss_pred cE
Confidence 75
No 113
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=64.66 E-value=9.6 Score=28.99 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=27.2
Q ss_pred cEEEEEEEEECCCCCCccHHHHHHHHHHHHHH
Q 033791 43 KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAK 74 (111)
Q Consensus 43 ~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~ 74 (111)
-.+-|.+++|.+.-|.+|||+.|++.+...-.
T Consensus 182 ~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~~ 213 (257)
T KOG3014|consen 182 AICGISRIWVSSLRRRKGIASLLLDVARCNFV 213 (257)
T ss_pred cEeeeEEEEeehhhhhhhhHHHHHHHHHHhhh
Confidence 45678999999999999999999998765543
No 114
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=62.30 E-value=13 Score=28.48 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHHHHCCCcEEee--ccchhhhhhhhCcCcccccc
Q 033791 60 GLASHLCRAAFNHAKSHSMSIIPT--CSYVSDTYLPRNPTWNSIIY 103 (111)
Q Consensus 60 Gig~~L~~~~~~~a~~~g~~~i~~--cs~~~~~~~~~~p~y~~l~~ 103 (111)
-+-+.=++.++++|+++|+.++|. +|--. .++-++|+|..+-.
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~-~~~l~~~~~~~l~~ 100 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPLIQTLGHL-EFILKHPEFRHLRE 100 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEecCCCHHHH-HHHHhCcccccccc
Confidence 378889999999999999999985 44445 45668888877643
No 115
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=61.31 E-value=5.9 Score=25.20 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=21.5
Q ss_pred CcEEEEEEEEECCCCCCccHHHHHH
Q 033791 42 GKVMDLVHTYVPSSKRGLGLASHLC 66 (111)
Q Consensus 42 ~~~~~i~~~~V~p~~rgqGig~~L~ 66 (111)
+.+++|.++.|+|+||+......|.
T Consensus 76 ~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 76 RRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CcEEEeehheECHhHCCChHHHHHh
Confidence 3789999999999999998877764
No 116
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=58.53 E-value=15 Score=29.51 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=40.9
Q ss_pred EEEEEECCCCCCccHH----------------------HHHHHHHHHHHHHCCCcEEeeccch-------hhhhhhhCcC
Q 033791 47 LVHTYVPSSKRGLGLA----------------------SHLCRAAFNHAKSHSMSIIPTCSYV-------SDTYLPRNPT 97 (111)
Q Consensus 47 i~~~~V~p~~rgqGig----------------------~~L~~~~~~~a~~~g~~~i~~cs~~-------~~~~~~~~p~ 97 (111)
.+.+++||.+=|-|.- ..+++.+....+..|.-+..+||.. .+.|+++||.
T Consensus 319 fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~ 398 (445)
T PRK14904 319 PDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPE 398 (445)
T ss_pred CCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 5778899888777752 2577777777777888899999994 2368889987
Q ss_pred ccc
Q 033791 98 WNS 100 (111)
Q Consensus 98 y~~ 100 (111)
+..
T Consensus 399 ~~~ 401 (445)
T PRK14904 399 FSA 401 (445)
T ss_pred CEE
Confidence 754
No 117
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=58.05 E-value=17 Score=28.85 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=26.6
Q ss_pred cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHC
Q 033791 43 KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSH 76 (111)
Q Consensus 43 ~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~ 76 (111)
+.-+|..+|++|+||+-|.|+.|-..=+-+..+.
T Consensus 120 G~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~ 153 (342)
T PF04958_consen 120 GCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQH 153 (342)
T ss_dssp TSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-
T ss_pred CCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhC
Confidence 4568999999999999999999988766666543
No 118
>PRK04531 acetylglutamate kinase; Provisional
Probab=55.84 E-value=18 Score=29.01 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=42.2
Q ss_pred CcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhC
Q 033791 42 GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 42 ~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~ 95 (111)
+....|..+.|.++-+|.|++..+.+.+.+...+.=|+.-...+..+ .||+|-
T Consensus 308 ~~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~~~L~Wrsr~~n~~~~-Wyf~~s 360 (398)
T PRK04531 308 GGGPYLDKFAVLDDARGEGLGRAVWNVMREETPQLFWRSRHNNTINK-FYYAES 360 (398)
T ss_pred CCceEeEEEEEccchhhcChHHHHHHHHHhhCCceEEEcCCCCCccc-eeeecc
Confidence 36789999999999999999999999888776655555556677777 577765
No 119
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=55.25 E-value=17 Score=24.80 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=30.7
Q ss_pred HHHHHHHHHCCCcEEeeccchhhhhhhhCcCcccccccCCCC
Q 033791 67 RAAFNHAKSHSMSIIPTCSYVSDTYLPRNPTWNSIIYSEDPR 108 (111)
Q Consensus 67 ~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p~y~~l~~~~~~~ 108 (111)
-+++.=|++.|++.+..|.--...++.+.+...+++.-+.+.
T Consensus 10 LqIl~GAk~EGFrT~~ic~~~r~~~Y~~f~~iDe~i~~d~f~ 51 (124)
T PF06849_consen 10 LQILDGAKDEGFRTIAICQKGREKFYRRFPFIDEVIVLDSFS 51 (124)
T ss_dssp HHHHHHHHHTT--EEEEEETTCHHHHHTTTT-SEEEEESSCG
T ss_pred HHHhhhHHHcCCcEEEEECCCCcchhhhcCcCcEEEEeCCHH
Confidence 357788999999999999988888999988666666555444
No 120
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=52.73 E-value=26 Score=28.10 Aligned_cols=55 Identities=18% Similarity=0.372 Sum_probs=37.7
Q ss_pred EEEEEEECCCCCCccH----------------------HHHHHHHHHHHHHHCCCcEEeeccc-------hhhhhhhhCc
Q 033791 46 DLVHTYVPSSKRGLGL----------------------ASHLCRAAFNHAKSHSMSIIPTCSY-------VSDTYLPRNP 96 (111)
Q Consensus 46 ~i~~~~V~p~~rgqGi----------------------g~~L~~~~~~~a~~~g~~~i~~cs~-------~~~~~~~~~p 96 (111)
..+.+.+||.+-|.|. -..+++.+....+..|.-+..+|+. +...|+++||
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~ 399 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHP 399 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCC
Confidence 3567888888766663 2346777777777777778889997 3335778888
Q ss_pred Cccc
Q 033791 97 TWNS 100 (111)
Q Consensus 97 ~y~~ 100 (111)
.++-
T Consensus 400 ~~~~ 403 (444)
T PRK14902 400 EFEL 403 (444)
T ss_pred CcEE
Confidence 6653
No 121
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=50.37 E-value=20 Score=28.70 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=38.4
Q ss_pred EEEEEECCCCCCccH----------------------HHHHHHHHHHHHHHCCCcEEeeccchh-------hhhhhhCcC
Q 033791 47 LVHTYVPSSKRGLGL----------------------ASHLCRAAFNHAKSHSMSIIPTCSYVS-------DTYLPRNPT 97 (111)
Q Consensus 47 i~~~~V~p~~rgqGi----------------------g~~L~~~~~~~a~~~g~~~i~~cs~~~-------~~~~~~~p~ 97 (111)
.+.+++||.+-|.|. -..+++.+....+..|.-++.+|++.. ..|+++||.
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~ 393 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPD 393 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCC
Confidence 577899998877663 135677777777667777889998765 467788887
Q ss_pred cc
Q 033791 98 WN 99 (111)
Q Consensus 98 y~ 99 (111)
+.
T Consensus 394 ~~ 395 (427)
T PRK10901 394 AE 395 (427)
T ss_pred CE
Confidence 64
No 122
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=49.65 E-value=11 Score=29.77 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=24.7
Q ss_pred cEEEEEEEEECCCCCCccHHHHHHHHHHHHH
Q 033791 43 KVMDLVHTYVPSSKRGLGLASHLCRAAFNHA 73 (111)
Q Consensus 43 ~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a 73 (111)
+.-+|..+|++|+||+-|.|+.|-..=+-+.
T Consensus 116 G~sElctLfL~p~~R~~~~G~LLSr~RfLFi 146 (335)
T TIGR03243 116 GSSELCTLFLDPDYRKGGNGRLLSRSRFLFI 146 (335)
T ss_pred CCeeeEEEEECHHHcCCCchhhHHHHHHHHH
Confidence 4568999999999999999998876544443
No 123
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=49.64 E-value=1.1e+02 Score=22.94 Aligned_cols=54 Identities=11% Similarity=0.037 Sum_probs=36.3
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEe
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIP 82 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~ 82 (111)
+|+ +||+.+.+....+.+.+.-.--+++ --+|+-..|+..+++.+++.|++-+.
T Consensus 189 dgki~af~~~~~~~~~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~ln 243 (299)
T PF09924_consen 189 DGKIVAFAIGSPLGGRDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLN 243 (299)
T ss_dssp TTEEEEEEEEEEEE-TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS--TT--EEE
T ss_pred CCcEEEEEEEEEccCCccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEE
Confidence 466 8999999876335666655556666 45689999999999999999988664
No 124
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=49.55 E-value=15 Score=28.49 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=22.7
Q ss_pred CCccHHHHHHHHHHHHHHHCCCcEE-eeccchhhh
Q 033791 57 RGLGLASHLCRAAFNHAKSHSMSII-PTCSYVSDT 90 (111)
Q Consensus 57 rgqGig~~L~~~~~~~a~~~g~~~i-~~cs~~~~~ 90 (111)
|-.|+..... +.++++|+.++ .+||++.+-
T Consensus 72 rAHGv~~~~~----~~~~~~g~~viDaTCP~V~k~ 102 (298)
T PRK01045 72 SAHGVSPAVR----EEAKERGLTVIDATCPLVTKV 102 (298)
T ss_pred eCCCCCHHHH----HHHHHCCCeEEeCCCccchHH
Confidence 5567776654 55888999977 799999853
No 125
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=48.37 E-value=16 Score=28.08 Aligned_cols=31 Identities=26% Similarity=0.619 Sum_probs=22.8
Q ss_pred CCccHHHHHHHHHHHHHHHCCCcEE-eeccchhhhh
Q 033791 57 RGLGLASHLCRAAFNHAKSHSMSII-PTCSYVSDTY 91 (111)
Q Consensus 57 rgqGig~~L~~~~~~~a~~~g~~~i-~~cs~~~~~~ 91 (111)
|-.|+.... .+.++++|+.++ .+||++.+-+
T Consensus 75 rAHGv~~~~----~~~~~~~g~~viDaTCP~V~k~~ 106 (281)
T PRK12360 75 RSHGVSKKV----YKDLKDKGLEIIDATCPFVKKIQ 106 (281)
T ss_pred eCCCCCHHH----HHHHHHCCCeEEeCCCccchHHH
Confidence 556776554 567888999977 7999999533
No 126
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=48.29 E-value=12 Score=29.58 Aligned_cols=31 Identities=26% Similarity=0.136 Sum_probs=24.5
Q ss_pred cEEEEEEEEECCCCCCccHHHHHHHHHHHHH
Q 033791 43 KVMDLVHTYVPSSKRGLGLASHLCRAAFNHA 73 (111)
Q Consensus 43 ~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a 73 (111)
+.-+|..+|++|+||+-|.|+.|-..=+-+.
T Consensus 117 G~sElctLfL~p~~R~~~~G~lLSr~RfLFi 147 (336)
T TIGR03245 117 GSSLLCSFYVDPRLRKTEAAELLSRARLLFM 147 (336)
T ss_pred CCeeeEEEEECHHHcCCCchhHHHHHHHHHH
Confidence 4568999999999999999988876544433
No 127
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=47.78 E-value=12 Score=29.52 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=23.8
Q ss_pred cEEEEEEEEECCCCCCccHHHHHHHHHHHH
Q 033791 43 KVMDLVHTYVPSSKRGLGLASHLCRAAFNH 72 (111)
Q Consensus 43 ~~~~i~~~~V~p~~rgqGig~~L~~~~~~~ 72 (111)
+.-+|..+|++|+||+-|.|+.|-..=+-+
T Consensus 116 G~SElctLfL~p~~R~~~~G~LLSr~RfLF 145 (336)
T TIGR03244 116 GYSELCTLFLDPDYRKGGNGRLLSKSRFLF 145 (336)
T ss_pred CCeeeEEEEECHHHcCCcchhhHHHHHHHH
Confidence 456899999999999999998887653333
No 128
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=47.72 E-value=17 Score=27.99 Aligned_cols=30 Identities=20% Similarity=0.490 Sum_probs=22.5
Q ss_pred CCccHHHHHHHHHHHHHHHCCCcEE-eeccchhhh
Q 033791 57 RGLGLASHLCRAAFNHAKSHSMSII-PTCSYVSDT 90 (111)
Q Consensus 57 rgqGig~~L~~~~~~~a~~~g~~~i-~~cs~~~~~ 90 (111)
|-.|++... .+.|+++|+.++ .+||++.+-
T Consensus 72 rAHGv~~~~----~~~~~~~gl~viDaTCP~V~kv 102 (280)
T TIGR00216 72 RAHGVPPEV----REELEKKGLEVIDATCPLVTKV 102 (280)
T ss_pred eCCCCCHHH----HHHHHHCCCeEEeCCCcccHHH
Confidence 556777654 566788999976 799999853
No 129
>PRK10456 arginine succinyltransferase; Provisional
Probab=47.14 E-value=13 Score=29.50 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=24.4
Q ss_pred cEEEEEEEEECCCCCCccHHHHHHHHHHHHH
Q 033791 43 KVMDLVHTYVPSSKRGLGLASHLCRAAFNHA 73 (111)
Q Consensus 43 ~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a 73 (111)
+.-+|..+|++|+||+-|.|+.|-..=+-+.
T Consensus 118 G~sElctLfl~p~~R~~~~G~LLSr~RfLFi 148 (344)
T PRK10456 118 GSSELCTLFLDPDWRKEGNGYLLSKSRFMFM 148 (344)
T ss_pred CCceeEEEEECHHHcCCCchhHHHHHHHHHH
Confidence 4568999999999999999988876544333
No 130
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=46.35 E-value=56 Score=26.70 Aligned_cols=61 Identities=16% Similarity=0.299 Sum_probs=50.4
Q ss_pred cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEE-eeccchhhhhhhh--CcCcccccc
Q 033791 43 KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSII-PTCSYVSDTYLPR--NPTWNSIIY 103 (111)
Q Consensus 43 ~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i-~~cs~~~~~~~~~--~p~y~~l~~ 103 (111)
++..|.-+.+.-+.-||-+.-+=++.+-+.|+..+++++ ..|-++.|.||-+ -|.|++.-.
T Consensus 185 nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI 248 (471)
T COG3033 185 NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSI 248 (471)
T ss_pred cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccH
Confidence 567888888888999999999999999999999999965 6788887777764 467987643
No 131
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=45.07 E-value=59 Score=21.10 Aligned_cols=52 Identities=12% Similarity=0.039 Sum_probs=36.6
Q ss_pred CcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhh
Q 033791 42 GKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPR 94 (111)
Q Consensus 42 ~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~ 94 (111)
+.+..|..+.|..+-.+.|+|..+.+.+.+.-.+.=++.-...+..+ -||+|
T Consensus 31 ~~vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d~p~L~W~~r~~n~~~~-W~f~r 82 (98)
T cd04263 31 GEVATLATFTITKSGWLNNVADNIFTAIKKDHPKLVWTVREDDENLK-WHFEK 82 (98)
T ss_pred CCCEEEEEEEEccccccccHHHHHHHHHHhhCCeeEEEeCCCCCccc-eEEee
Confidence 47889999999999999999999888877654433333334555555 45554
No 132
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=44.67 E-value=43 Score=28.08 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=33.8
Q ss_pred EEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccc
Q 033791 47 LVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSY 86 (111)
Q Consensus 47 i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~ 86 (111)
++.+.|+..|-.+|+-.++.. +.+||+++++.+..|--
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~A--i~yAREn~iP~lGIClG 381 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAA--IRYARENNIPFLGICLG 381 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHH--HHHHHhcCCCEEEEchh
Confidence 688999999999999999764 79999999999988854
No 133
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=44.67 E-value=1.2e+02 Score=23.19 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=33.9
Q ss_pred EEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEee
Q 033791 45 MDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPT 83 (111)
Q Consensus 45 ~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~ 83 (111)
+...-+|-||++...++|+..+-.=+.+|++.|+.-+.+
T Consensus 175 lSsVY~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYL 213 (253)
T COG2935 175 LSSVYTFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYL 213 (253)
T ss_pred ceeEEEEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEE
Confidence 555667889999999999999999999999999987654
No 134
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=44.31 E-value=5.2 Score=34.61 Aligned_cols=90 Identities=12% Similarity=0.162 Sum_probs=66.5
Q ss_pred eEEEcCCCceEEE--e--CcEEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCC-Cc--EEeeccch
Q 033791 15 KIVWNESKRRFET--E--DKEAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHS-MS--IIPTCSYV 87 (111)
Q Consensus 15 ~i~~~~~~~~f~~--~--g~~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g-~~--~i~~cs~~ 87 (111)
..+.+..++...+ + |.+|-++++..++.+...+..-.|+-+.|-+|.|..|++++.++.+..+ +. ......++
T Consensus 412 rlv~d~~h~~~~~~~d~~g~vggi~~r~f~~k~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~ltyad~~a 491 (720)
T KOG1472|consen 412 RLVFDTSHHVMARIKDNEGVVGGICFRPFPEKGFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTYADEGA 491 (720)
T ss_pred hhccccccccceeeccccccccccccCcCcccCCcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHhhhhcc
Confidence 4456666666654 3 4588889998776667788888999999999999999999999999876 32 23445666
Q ss_pred hhhhhhhCcCcccccccC
Q 033791 88 SDTYLPRNPTWNSIIYSE 105 (111)
Q Consensus 88 ~~~~~~~~p~y~~l~~~~ 105 (111)
. .||.+.+..+++-...
T Consensus 492 i-gyfkkqgfs~ei~~~~ 508 (720)
T KOG1472|consen 492 I-GYFKKQGFSKEIKFEK 508 (720)
T ss_pred c-ccccCccchhhccccc
Confidence 6 6777777766654443
No 135
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=43.28 E-value=21 Score=28.79 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=22.3
Q ss_pred CCccHHHHHHHHHHHHHHHCCCcEE-eeccchhhh
Q 033791 57 RGLGLASHLCRAAFNHAKSHSMSII-PTCSYVSDT 90 (111)
Q Consensus 57 rgqGig~~L~~~~~~~a~~~g~~~i-~~cs~~~~~ 90 (111)
|-.|+.... .+.++++|+.++ ++||++.+-
T Consensus 116 rAHGv~~~v----~~~~~~rgl~iiDATCP~V~kv 146 (387)
T PRK13371 116 PAFGATVQE----MQLLNEKGCHIVDTTCPWVSKV 146 (387)
T ss_pred eCCCCCHHH----HHHHHHCCCeEEecCCccchHH
Confidence 455766554 567888999977 799999953
No 136
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.01 E-value=16 Score=30.61 Aligned_cols=65 Identities=11% Similarity=0.008 Sum_probs=49.2
Q ss_pred eEEEcCCCceEEE---e-----CcEEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEE
Q 033791 15 KIVWNESKRRFET---E-----DKEAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 15 ~i~~~~~~~~f~~---~-----g~~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i 81 (111)
++.+++..-.|.+ | |-+|++.+... ++.|.|..+-..=..=|+++=..||..+++.|+..|...+
T Consensus 451 ~~~~~~~~li~sv~l~DKfgDnGiigvviv~kk--~~~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~ti 523 (574)
T COG3882 451 QMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEKK--ESEWFIDTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTI 523 (574)
T ss_pred HHhhCCCeEEEEEEeccccccCceEEEEEEEec--CCeEEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccee
Confidence 3556665555554 2 23777777764 3678888887777778999999999999999999998765
No 137
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=41.40 E-value=9.9 Score=26.33 Aligned_cols=33 Identities=9% Similarity=0.256 Sum_probs=24.4
Q ss_pred HHHHHC-CCcEEeeccchhhhhhhhCcCccccccc
Q 033791 71 NHAKSH-SMSIIPTCSYVSDTYLPRNPTWNSIIYS 104 (111)
Q Consensus 71 ~~a~~~-g~~~i~~cs~~~~~~~~~~p~y~~l~~~ 104 (111)
.|.|.+ |-..-++-.-+. .++..||||..++..
T Consensus 13 ~w~K~~~~~~L~~lE~~a~-~~i~~HPEYh~~l~~ 46 (137)
T PF08897_consen 13 AWRKYRAGEPLTPLEQIAA-DVIEEHPEYHALLDD 46 (137)
T ss_pred HHHHHHCCCCCCHHHHHHH-HHHHHCcchHHHHhC
Confidence 344443 555667777788 799999999999874
No 138
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=40.62 E-value=75 Score=24.19 Aligned_cols=41 Identities=5% Similarity=-0.062 Sum_probs=32.9
Q ss_pred cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEee
Q 033791 43 KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPT 83 (111)
Q Consensus 43 ~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~ 83 (111)
+.+.......+++++..+-+..|+-+++++|+++|++..-.
T Consensus 218 ~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDf 258 (330)
T TIGR03019 218 DEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDF 258 (330)
T ss_pred CEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEc
Confidence 34443355568899999999999999999999999987643
No 139
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=40.33 E-value=28 Score=27.11 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=22.0
Q ss_pred CCccHHHHHHHHHHHHHHHCCCcEE-eeccchhh
Q 033791 57 RGLGLASHLCRAAFNHAKSHSMSII-PTCSYVSD 89 (111)
Q Consensus 57 rgqGig~~L~~~~~~~a~~~g~~~i-~~cs~~~~ 89 (111)
+-.|+... +.+.|+++|++++ ++||++.+
T Consensus 73 sAHGVs~~----v~~~a~~r~l~v~DATCPlVtK 102 (294)
T COG0761 73 SAHGVSPA----VREEAKERGLKVIDATCPLVTK 102 (294)
T ss_pred ECCCCCHH----HHHHHHHCCCEEEecCCCcchH
Confidence 44566654 5577899999976 79999985
No 140
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.86 E-value=45 Score=26.10 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHCCCcEEee--ccchhhhhhhhCcCcc
Q 033791 61 LASHLCRAAFNHAKSHSMSIIPT--CSYVSDTYLPRNPTWN 99 (111)
Q Consensus 61 ig~~L~~~~~~~a~~~g~~~i~~--cs~~~~~~~~~~p~y~ 99 (111)
+-+.=++.++++|+++|+.++|. .|--...++..+|++.
T Consensus 83 YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~ 123 (357)
T cd06563 83 YTQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELG 123 (357)
T ss_pred ECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCcccc
Confidence 77889999999999999999985 5555544555567654
No 141
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=38.17 E-value=1.9e+02 Score=24.47 Aligned_cols=53 Identities=11% Similarity=0.059 Sum_probs=43.4
Q ss_pred Cc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEe
Q 033791 29 DK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIP 82 (111)
Q Consensus 29 g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~ 82 (111)
|+ +||+.+.+......+.|+-+--+|+.-. |+=..|+.+++.++|++|++...
T Consensus 402 g~VvaFa~l~~~~~~~~~SlDlMR~sp~ap~-g~mdfLf~~li~~aKe~G~~~fs 455 (538)
T COG2898 402 GEVVAFANLMPTGGKEGYSLDLMRRSPDAPN-GTMDFLFSELILWAKEEGYQRFS 455 (538)
T ss_pred CCeEEEEeecccCCcceeEEEeeecCCCCCc-hHHHHHHHHHHHHHHHcCCeEEe
Confidence 45 8999888765445678888888888765 99999999999999999998664
No 142
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=38.10 E-value=32 Score=23.45 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=19.5
Q ss_pred EEECCCCCCccHHHHHHHHHHH
Q 033791 50 TYVPSSKRGLGLASHLCRAAFN 71 (111)
Q Consensus 50 ~~V~p~~rgqGig~~L~~~~~~ 71 (111)
+.+||+++|.-|.+.|.+++-.
T Consensus 60 ILTD~D~~Ge~Irk~l~~~l~~ 81 (127)
T COG1658 60 ILTDPDRKGERIRKKLKEYLPG 81 (127)
T ss_pred EEeCCCcchHHHHHHHHHHhcc
Confidence 6789999999999999988765
No 143
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=37.04 E-value=22 Score=27.27 Aligned_cols=29 Identities=24% Similarity=0.604 Sum_probs=16.8
Q ss_pred CCccHHHHHHHHHHHHHHHCCCcEE-eeccchhh
Q 033791 57 RGLGLASHLCRAAFNHAKSHSMSII-PTCSYVSD 89 (111)
Q Consensus 57 rgqGig~~L~~~~~~~a~~~g~~~i-~~cs~~~~ 89 (111)
|..|+..... +.++++|+.++ .+||++.+
T Consensus 70 rAHGv~~~~~----~~l~~~g~~viDaTCP~V~k 99 (281)
T PF02401_consen 70 RAHGVPPEVY----EELKERGLEVIDATCPFVKK 99 (281)
T ss_dssp -TT---HHHH----HHHHHTTEEEEE---HHHHH
T ss_pred eCCCCCHHHH----HHHHHcCCEEEECCChhHHH
Confidence 6678886654 56778999976 79999984
No 144
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=36.84 E-value=50 Score=21.73 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHHHHHCCCcEE
Q 033791 60 GLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 60 Gig~~L~~~~~~~a~~~g~~~i 81 (111)
+|+..|++.+.+.|+++|.+.+
T Consensus 5 si~~~iv~~v~~~a~~~~~~~V 26 (114)
T PRK03681 5 TLCQRALELIEQQAAKHGAKRV 26 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCeE
Confidence 6889999999999999987744
No 145
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=36.08 E-value=33 Score=21.96 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=26.6
Q ss_pred EEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchh
Q 033791 46 DLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVS 88 (111)
Q Consensus 46 ~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~ 88 (111)
.+..+|++++-|-.| +.|.+.+++.|++.|+.-...-.-..
T Consensus 4 ~~Lriy~~e~~~~~g--~~l~~~ll~~~~~~gi~GaTV~rgi~ 44 (101)
T PF02641_consen 4 KLLRIYLSESDRWGG--KPLYEWLLERAREAGIAGATVFRGIE 44 (101)
T ss_dssp EEEEEEEETT-EETT--EEHHHHHHHHHHHTT-SEEEEEE-SE
T ss_pred EEEEEEEcCccccCc--eEHHHHHHHHHHHCCCCeEEEEccee
Confidence 567889999877554 67778888888888877544333333
No 146
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=36.03 E-value=30 Score=29.38 Aligned_cols=31 Identities=23% Similarity=0.582 Sum_probs=23.0
Q ss_pred CCCccHHHHHHHHHHHHHHHCCCcEE-eeccchhhh
Q 033791 56 KRGLGLASHLCRAAFNHAKSHSMSII-PTCSYVSDT 90 (111)
Q Consensus 56 ~rgqGig~~L~~~~~~~a~~~g~~~i-~~cs~~~~~ 90 (111)
+|-.|++... .+.|+++|+.++ ++||++.+-
T Consensus 71 i~aHG~~~~~----~~~~~~~~~~viDaTCP~V~k~ 102 (647)
T PRK00087 71 IRSHGVPPEV----LEELKDKGLKVIDATCPFVKNI 102 (647)
T ss_pred EeCCCCCHHH----HHHHHHCCCeEEECCCcCchHH
Confidence 3556776554 567888999977 799999853
No 147
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=35.25 E-value=37 Score=27.93 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=41.7
Q ss_pred EEEEEEECCCCCCccH----------------------HHHHHHHHHHHHHHCCCcEEeeccchh-------hhhhhhCc
Q 033791 46 DLVHTYVPSSKRGLGL----------------------ASHLCRAAFNHAKSHSMSIIPTCSYVS-------DTYLPRNP 96 (111)
Q Consensus 46 ~i~~~~V~p~~rgqGi----------------------g~~L~~~~~~~a~~~g~~~i~~cs~~~-------~~~~~~~p 96 (111)
..+.|.||+..=|-|. =+.|++.+.+..+.-|.-+..+||+.. ..|+++||
T Consensus 183 ~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 183 TFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred hcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 4688999999888874 256788888888888888889999754 46788888
Q ss_pred Cc
Q 033791 97 TW 98 (111)
Q Consensus 97 ~y 98 (111)
+.
T Consensus 263 ~~ 264 (470)
T PRK11933 263 DA 264 (470)
T ss_pred Cc
Confidence 64
No 148
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=35.07 E-value=36 Score=28.11 Aligned_cols=30 Identities=20% Similarity=0.522 Sum_probs=21.6
Q ss_pred CccHHHHHHHHHHHHHHHCCCcEE-eeccchhhhh
Q 033791 58 GLGLASHLCRAAFNHAKSHSMSII-PTCSYVSDTY 91 (111)
Q Consensus 58 gqGig~~L~~~~~~~a~~~g~~~i-~~cs~~~~~~ 91 (111)
--|++... .+.++++|+.++ .+||++.+-+
T Consensus 185 AHGvs~~~----~~~l~~kg~~IVDaTCP~V~KV~ 215 (460)
T PLN02821 185 AFGASVEE----MQTLNDKNVQIVDTTCPWVSKVW 215 (460)
T ss_pred CCCCCHHH----HHHHHHCCCeEEecCCcchHHHH
Confidence 34666554 456788999977 7999998533
No 149
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=34.98 E-value=1.2e+02 Score=23.17 Aligned_cols=77 Identities=9% Similarity=-0.053 Sum_probs=50.1
Q ss_pred ceEEEeCc-EEEEEEEEecCCcEEEEEE--EEECCCCCCccHHHHHH----HHHHHHHHHCCCcEEeeccchhhhhhhhC
Q 033791 23 RRFETEDK-EAYVEYVVRENGKVMDLVH--TYVPSSKRGLGLASHLC----RAAFNHAKSHSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 23 ~~f~~~g~-~G~i~y~~~~~~~~~~i~~--~~V~p~~rgqGig~~L~----~~~~~~a~~~g~~~i~~cs~~~~~~~~~~ 95 (111)
+..+++|+ +|+=-+........+.++- --+||+++.--.|+.|| +.+.++|+++|.+..-.-- +..
T Consensus 176 ~vL~l~~~P~Aiqlv~k~es~~wv~~D~iNgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~lrfSfG-------r~~ 248 (264)
T PF07395_consen 176 SVLFLNGQPCAIQLVYKVESPKWVYFDYINGGYDPECRDFSPGSILMWLNIQDAWEYCRAQGKPLRFSFG-------RPD 248 (264)
T ss_pred eEEEECCcceEEEEEEEecCCCeEEEecccCccCcccccCCCccEEEEeeHHHHHHHHHHhCCceEEEcC-------CCC
Confidence 34445666 6654444333333344443 45899999999999984 8889999999988653222 123
Q ss_pred cCcccccccCC
Q 033791 96 PTWNSIIYSED 106 (111)
Q Consensus 96 p~y~~l~~~~~ 106 (111)
-+|++.|.+..
T Consensus 249 ~~YK~rWc~~~ 259 (264)
T PF07395_consen 249 WDYKDRWCNRV 259 (264)
T ss_pred hHHHhhcCccc
Confidence 47888887754
No 150
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=34.98 E-value=39 Score=24.98 Aligned_cols=42 Identities=7% Similarity=0.150 Sum_probs=34.7
Q ss_pred CCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
|...|.--|..-+..++++|.+.|++.+.+..|...+| .|.+
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~-~R~~ 62 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENW-KRPK 62 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhh-CcCH
Confidence 44567778999999999999999999999988888666 4544
No 151
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=34.70 E-value=2e+02 Score=26.44 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=43.8
Q ss_pred eCc-EEEEEEEEecCCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEee
Q 033791 28 EDK-EAYVEYVVRENGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPT 83 (111)
Q Consensus 28 ~g~-~G~i~y~~~~~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~ 83 (111)
+|+ +|++.+.+... +.+.++-+--+|+. =.|+-..|+..++++++++|++-+.+
T Consensus 429 ~G~i~af~s~~p~~~-~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sL 483 (1094)
T PRK02983 429 DGQVVALLSFVPWGR-RGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISL 483 (1094)
T ss_pred CCeEEEEEEEeeeCC-CCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEe
Confidence 356 89999998643 34788888878876 56999999999999999999986643
No 152
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=34.62 E-value=40 Score=27.22 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=36.7
Q ss_pred EEEEEEEE-----ec-CCcEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCC
Q 033791 31 EAYVEYVV-----RE-NGKVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHS 77 (111)
Q Consensus 31 ~G~i~y~~-----~~-~~~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g 77 (111)
+|||+-.+ .+ --+...|+.+.|+...|+++++=.|++++-..+.-.|
T Consensus 148 VaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~g 200 (421)
T KOG2779|consen 148 VAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEG 200 (421)
T ss_pred EEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhh
Confidence 78886433 22 1146899999999999999999999999888777655
No 153
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=33.68 E-value=59 Score=22.92 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=27.9
Q ss_pred EEEEEE--ECCCCCCccHHHHHHHHHHHHHHHCCCcEE
Q 033791 46 DLVHTY--VPSSKRGLGLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 46 ~i~~~~--V~p~~rgqGig~~L~~~~~~~a~~~g~~~i 81 (111)
.|...| .+|+|+|.- +..|++++.+.+++.|+++.
T Consensus 55 DIG~~Fpdtd~~~k~~~-S~~lL~~~~~~~~~~g~~i~ 91 (155)
T TIGR00151 55 DIGKHFPDTDPRWKGAD-SRVLLRHAVALIKEKGYRIG 91 (155)
T ss_pred cCcccCCCCChhhCCCC-HHHHHHHHHHHHHHcCCEEE
Confidence 344444 478888877 89999999999999999865
No 154
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=31.68 E-value=46 Score=22.90 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=20.3
Q ss_pred CCccHHHHHHHHHHHHHHHCCCcEEeec
Q 033791 57 RGLGLASHLCRAAFNHAKSHSMSIIPTC 84 (111)
Q Consensus 57 rgqGig~~L~~~~~~~a~~~g~~~i~~c 84 (111)
||=|||+.+++++.+...+ .+.++.+-
T Consensus 8 QGGGiG~~iv~~lr~~~~~-~~eI~AlG 34 (131)
T PF12953_consen 8 QGGGIGKQIVEKLRKELPE-EVEIIALG 34 (131)
T ss_pred CCChhHHHHHHHHHHhCCC-CcEEEEEe
Confidence 6789999999998877765 36665543
No 155
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=31.53 E-value=68 Score=21.10 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHHHCCCcEE
Q 033791 60 GLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 60 Gig~~L~~~~~~~a~~~g~~~i 81 (111)
+|+..+++.+.+.|+++|.+.+
T Consensus 5 sia~~iv~~v~~~a~~~~~~~V 26 (115)
T TIGR00100 5 SLAEAMLEIVEEQAEKHQAKKV 26 (115)
T ss_pred HHHHHHHHHHHHHHHHhCCCeE
Confidence 6889999999999999987743
No 156
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.45 E-value=41 Score=25.31 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=34.8
Q ss_pred CCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
+...|.-.|..-+..++++|.+.|++.+.+..|...+| .|.|
T Consensus 30 ~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~-~R~~ 71 (239)
T PRK14839 30 PRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNW-RRPA 71 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhc-CCCH
Confidence 44567778999999999999999999999888888665 5655
No 157
>PF05292 MCD: Malonyl-CoA decarboxylase (MCD); InterPro: IPR007956 This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins. Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that regulates the transfer of long-chain fatty acyl-CoA into mitochondria, where they are oxidised. After exercise, malonyl-CoA decarboxylase participates with acetyl-CoA carboxylase in regulating the concentration of malonyl-CoA in liver and adipose tissue, as well as in muscle. Malonyl-CoA decarboxylase is regulated by AMP-activated protein kinase (AMPK) [].; GO: 0050080 malonyl-CoA decarboxylase activity, 0006633 fatty acid biosynthetic process; PDB: 2YGW_B.
Probab=31.43 E-value=1.1e+02 Score=24.59 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=28.0
Q ss_pred EEEEEEEE-ECCCCCCccHHHHHHHHHHHHHHHC--CCcEEeec
Q 033791 44 VMDLVHTY-VPSSKRGLGLASHLCRAAFNHAKSH--SMSIIPTC 84 (111)
Q Consensus 44 ~~~i~~~~-V~p~~rgqGig~~L~~~~~~~a~~~--g~~~i~~c 84 (111)
+...+.+- ..+..+|-.+|..|+..+++..+.. +++.-.+-
T Consensus 181 tAiFYSISn~q~GL~Gi~lGn~LIK~Vv~~L~~e~p~l~~F~TL 224 (354)
T PF05292_consen 181 TAIFYSISNTQKGLRGISLGNFLIKRVVEELQREFPNLKTFSTL 224 (354)
T ss_dssp EEEEEEEEES-GGGTTS-HHHHHHHHHHHHHHHH-TT--EEEE-
T ss_pred EEEEEecccchhhhccCchHHHHHHHHHHHHHHhCccccccccC
Confidence 44555543 7899999999999999999999975 56654443
No 158
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.30 E-value=58 Score=24.37 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=35.0
Q ss_pred CCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
|...|.--|..-+..++++|.+.|++.+.+..|...+| .|.+
T Consensus 27 ~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~-~Rp~ 68 (230)
T PRK14837 27 SFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENW-NRTD 68 (230)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhc-CCCH
Confidence 45567778999999999999999999999998888666 4444
No 159
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.25 E-value=48 Score=24.95 Aligned_cols=42 Identities=7% Similarity=0.140 Sum_probs=34.9
Q ss_pred CCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
|...|.--|..-+..++++|.+.|++.+.+..|...+| .|.|
T Consensus 29 ~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~-~R~~ 70 (241)
T PRK14842 29 KRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENW-KRPI 70 (241)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhc-CCCH
Confidence 44567778999999999999999999999988888665 5554
No 160
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=31.18 E-value=1.2e+02 Score=22.43 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHCCCc-EEeeccchhhhhhhhC
Q 033791 61 LASHLCRAAFNHAKSHSMS-IIPTCSYVSDTYLPRN 95 (111)
Q Consensus 61 ig~~L~~~~~~~a~~~g~~-~i~~cs~~~~~~~~~~ 95 (111)
-...|+..+.+.|+++|+. ++.-||-.....|.++
T Consensus 22 ~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~~~ 57 (266)
T TIGR03827 22 DVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFEER 57 (266)
T ss_pred cHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHHHC
Confidence 3688999999999999995 6666766655555554
No 161
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=31.10 E-value=60 Score=24.18 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=34.9
Q ss_pred CCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
|...|.--|..-+..++++|.+.|++.+.+..|...+| .|.+
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~-~Rp~ 61 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENW-KRPK 61 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhc-CcCH
Confidence 45567778999999999999999999999999888666 4443
No 162
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=30.84 E-value=52 Score=25.06 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHCCCcEEee--ccchhhhhhhhCcCcc
Q 033791 60 GLASHLCRAAFNHAKSHSMSIIPT--CSYVSDTYLPRNPTWN 99 (111)
Q Consensus 60 Gig~~L~~~~~~~a~~~g~~~i~~--cs~~~~~~~~~~p~y~ 99 (111)
-+-+.=++.++++|+++|+.+||. .|--...++..+|++.
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~PGH~~~~l~~~p~~~ 110 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTPGHAEAWLKAYPELG 110 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEESSS-HHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCchHHHHHHHhCchhh
Confidence 577889999999999999999985 4444423344456544
No 163
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=30.30 E-value=45 Score=26.30 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=35.0
Q ss_pred CCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
|...|.-.|..-+..++++|.+.|++.+.+..|...+| .|.+
T Consensus 40 ~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENw-kRp~ 81 (322)
T PTZ00349 40 HSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNY-NRSP 81 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhh-CCCH
Confidence 44557778999999999999999999999999988666 4544
No 164
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=29.94 E-value=56 Score=25.05 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=28.0
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchh
Q 033791 53 PSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVS 88 (111)
Q Consensus 53 ~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~ 88 (111)
||.-|.|+ -.+|+.+++.|+..|++++-+.-|-.
T Consensus 87 D~~~r~~a--leiM~KaI~LA~dLGIRtIQLAGYDV 120 (287)
T COG3623 87 DEATRQQA--LEIMEKAIQLAQDLGIRTIQLAGYDV 120 (287)
T ss_pred CHHHHHHH--HHHHHHHHHHHHHhCceeEeecccee
Confidence 34444444 68999999999999999999988888
No 165
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=29.76 E-value=77 Score=20.80 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHHHHHHCCCcEE
Q 033791 60 GLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 60 Gig~~L~~~~~~~a~~~g~~~i 81 (111)
+|+..|++.+.+.|+++|.+.+
T Consensus 5 si~~~iv~~v~~~a~~~~~~rV 26 (113)
T PRK12380 5 SLCQSAVEIIQRQAEQHDVKRV 26 (113)
T ss_pred HHHHHHHHHHHHHHHHhCCCeE
Confidence 6889999999999999987644
No 166
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=29.51 E-value=79 Score=21.10 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHHCCCcEE
Q 033791 60 GLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 60 Gig~~L~~~~~~~a~~~g~~~i 81 (111)
+|...|++.+.+.|+++|.+.+
T Consensus 5 si~~~il~~v~~~a~~~~~~rV 26 (124)
T PRK00762 5 SMACEIVEAVIDTAEKNNATEV 26 (124)
T ss_pred HHHHHHHHHHHHHHHHcCCCeE
Confidence 6889999999999999988754
No 167
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=29.34 E-value=69 Score=20.95 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHHHHHHCCCcEE
Q 033791 60 GLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 60 Gig~~L~~~~~~~a~~~g~~~i 81 (111)
+|+..|++.+.+.|++++.+.+
T Consensus 5 si~~~iv~~v~~~a~~~~~~kV 26 (113)
T PF01155_consen 5 SIAQSIVEIVEEEAEENGAKKV 26 (113)
T ss_dssp HHHHHHHHHHHHHHHCTT-SEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEE
Confidence 6889999999999999987644
No 168
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=29.10 E-value=78 Score=20.16 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=24.4
Q ss_pred CCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhC
Q 033791 55 SKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 55 ~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~ 95 (111)
++.|.- +. +-.+++.|+++|++++.++.... .-+.+.
T Consensus 55 S~sG~t--~~-~~~~~~~a~~~g~~vi~iT~~~~-s~la~~ 91 (128)
T cd05014 55 SNSGET--DE-LLNLLPHLKRRGAPIIAITGNPN-STLAKL 91 (128)
T ss_pred eCCCCC--HH-HHHHHHHHHHCCCeEEEEeCCCC-Cchhhh
Confidence 555543 44 44557789999999998877665 334443
No 169
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.75 E-value=48 Score=25.10 Aligned_cols=42 Identities=7% Similarity=0.189 Sum_probs=34.7
Q ss_pred CCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
|...|.--|..-+..++++|.+.|++.+.+..|...+| .|.|
T Consensus 43 ~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~-~R~~ 84 (250)
T PRK14840 43 RAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENF-SRSK 84 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhc-CCCH
Confidence 44556778999999999999999999999988888666 5554
No 170
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=28.69 E-value=88 Score=20.98 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHHCCCcEE
Q 033791 60 GLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 60 Gig~~L~~~~~~~a~~~g~~~i 81 (111)
.++..+++-++++|+++|.+.+
T Consensus 5 Sla~aii~~i~~~A~~~~a~~V 26 (115)
T COG0375 5 SLAQAIIELIEEQAEKHGAKRV 26 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCceE
Confidence 5789999999999999998644
No 171
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.31 E-value=65 Score=24.30 Aligned_cols=42 Identities=7% Similarity=0.177 Sum_probs=34.8
Q ss_pred CCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
+...|.-.|..-+..++++|.+.|++.+.+..|...+| .|.+
T Consensus 41 ~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~-kR~~ 82 (249)
T PRK14831 41 PRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENW-SRPL 82 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhh-CcCH
Confidence 34567778999999999999999999999999987555 5554
No 172
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=28.30 E-value=58 Score=24.83 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHCCCcEEee--ccchhhhhhhhCcC
Q 033791 61 LASHLCRAAFNHAKSHSMSIIPT--CSYVSDTYLPRNPT 97 (111)
Q Consensus 61 ig~~L~~~~~~~a~~~g~~~i~~--cs~~~~~~~~~~p~ 97 (111)
+-+.=++.++++|+++|+.++|. +|--...++..+|+
T Consensus 69 yT~~di~elv~yA~~rgI~viPEiD~PGH~~a~~~~~p~ 107 (303)
T cd02742 69 YTYAQLKDIIEYAAARGIEVIPEIDMPGHSTAFVKSFPK 107 (303)
T ss_pred ECHHHHHHHHHHHHHcCCEEEEeccchHHHHHHHHhCHH
Confidence 78899999999999999999985 55555344444454
No 173
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=28.29 E-value=1e+02 Score=21.30 Aligned_cols=32 Identities=16% Similarity=0.044 Sum_probs=26.5
Q ss_pred CCccHHHHHHHHHHHHHHHCCCcEEeeccchh
Q 033791 57 RGLGLASHLCRAAFNHAKSHSMSIIPTCSYVS 88 (111)
Q Consensus 57 rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~ 88 (111)
+-.++-.+.++.+.+.|++.+.+.+.+-||+.
T Consensus 51 ~~~~vv~~av~eI~~~a~kv~~~~ivlyPyAH 82 (138)
T PF08915_consen 51 NPEGVVEKAVEEIKWVAKKVKAKRIVLYPYAH 82 (138)
T ss_dssp -HHHHHHHHHHHHHHHHHHTT-SEEEEEE-GG
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 34579999999999999999999999999987
No 174
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.42 E-value=57 Score=21.95 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=25.1
Q ss_pred HHHHHHHHHCCCcEEeeccchhhhhhhhCcCccccccc
Q 033791 67 RAAFNHAKSHSMSIIPTCSYVSDTYLPRNPTWNSIIYS 104 (111)
Q Consensus 67 ~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p~y~~l~~~ 104 (111)
+.+++.|++.+..++.+|+... .+.+.-|+..+.+..
T Consensus 43 e~~v~aa~e~~adii~iSsl~~-~~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 43 EEIARQAVEADVHVVGVSSLAG-GHLTLVPALRKELDK 79 (132)
T ss_pred HHHHHHHHHcCCCEEEEcCchh-hhHHHHHHHHHHHHh
Confidence 4567777788888888888887 566655554444433
No 175
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=27.03 E-value=80 Score=22.66 Aligned_cols=27 Identities=11% Similarity=0.179 Sum_probs=18.7
Q ss_pred CccHHHHHHHHHHHHHHHCCCcEEeec
Q 033791 58 GLGLASHLCRAAFNHAKSHSMSIIPTC 84 (111)
Q Consensus 58 gqGig~~L~~~~~~~a~~~g~~~i~~c 84 (111)
+.|||..+..++.+..++.|++++.++
T Consensus 9 s~GIG~~~a~~la~~~~~~g~~V~~~~ 35 (256)
T TIGR01500 9 SRGFGRTIAQELAKCLKSPGSVLVLSA 35 (256)
T ss_pred CCchHHHHHHHHHHhhccCCcEEEEEE
Confidence 368888888877665556777766553
No 176
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=26.98 E-value=58 Score=21.01 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=27.2
Q ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeec
Q 033791 48 VHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTC 84 (111)
Q Consensus 48 ~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~c 84 (111)
..+.|++++|- +=-.+.++++++|+++.+++...|
T Consensus 57 kcVvVd~~L~~--~~P~af~fvm~FA~dN~L~v~~~~ 91 (92)
T PF12112_consen 57 KCVVVDERLRD--IEPMAFDFVMNFAKDNDLQVREAC 91 (92)
T ss_dssp --EEEETHHHH--H-HHHHHHHHHHHHHHTEEEEESS
T ss_pred EEEEEccHhhh--cChHHHHHHHHHHHHCCCeeeecc
Confidence 56788888765 446788999999999999998776
No 177
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=26.90 E-value=1.2e+02 Score=22.07 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=27.2
Q ss_pred EEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcE
Q 033791 44 VMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSI 80 (111)
Q Consensus 44 ~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~ 80 (111)
+.++.-..|.|+++|.||+..| ..+.-..++.|+.-
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF 120 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPF 120 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCe
Confidence 4456666699999999999875 56677777777663
No 178
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=25.52 E-value=74 Score=24.72 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHCCCcEEee--ccchhhhhhhhCcCcc
Q 033791 61 LASHLCRAAFNHAKSHSMSIIPT--CSYVSDTYLPRNPTWN 99 (111)
Q Consensus 61 ig~~L~~~~~~~a~~~g~~~i~~--cs~~~~~~~~~~p~y~ 99 (111)
+-+.=++.++++|+++|+.++|. .|--...++..+|++.
T Consensus 72 YT~~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~ 112 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPEIDMPGHTNAALAAYPELN 112 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCcHHHHHHHHhChhhc
Confidence 77888999999999999999985 4444434444566553
No 179
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.89 E-value=56 Score=21.30 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHCCCcEE-eeccchh
Q 033791 64 HLCRAAFNHAKSHSMSII-PTCSYVS 88 (111)
Q Consensus 64 ~L~~~~~~~a~~~g~~~i-~~cs~~~ 88 (111)
..-+++++.|++.|++++ +.|..+.
T Consensus 89 ~~~~~~~~~a~~~gi~vigp~C~gv~ 114 (116)
T PF13380_consen 89 AESEELIEAAREAGIRVIGPNCLGVV 114 (116)
T ss_dssp S--HHHHHHHHHTT-EEEESS-HHHH
T ss_pred hHHHHHHHHHHHcCCEEEeCCcceEE
Confidence 445677778888888877 7776543
No 180
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.81 E-value=92 Score=23.26 Aligned_cols=42 Identities=7% Similarity=0.205 Sum_probs=34.6
Q ss_pred CCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
|...|.--|..-+..++++|.+.|++.+.+..|...+| .|.+
T Consensus 24 ~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~-~R~~ 65 (233)
T PRK14841 24 PRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENW-KRPK 65 (233)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhc-CCCH
Confidence 44567778999999999999999999999988888666 4443
No 181
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.27 E-value=68 Score=24.14 Aligned_cols=42 Identities=7% Similarity=0.161 Sum_probs=34.6
Q ss_pred CCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
|...|.--|..-+..++++|.+.|++.+.+..|...+| .|.|
T Consensus 31 ~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~-kR~~ 72 (242)
T PRK14838 31 ERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENW-NRPS 72 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhc-CCCH
Confidence 34457778899999999999999999999998888666 5554
No 182
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.12 E-value=1.1e+02 Score=20.16 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHHHHHCCCcEE
Q 033791 60 GLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 60 Gig~~L~~~~~~~a~~~g~~~i 81 (111)
+|+..|++.+.+.|+++|.+.+
T Consensus 5 si~~~il~~v~~~a~~~~~~~V 26 (117)
T PRK00564 5 SVVSSLIALCEEHAKKNQAHKI 26 (117)
T ss_pred HHHHHHHHHHHHHHHHcCCCeE
Confidence 6888999999999999988754
No 183
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.06 E-value=66 Score=24.72 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHCCCcEEee--ccchhhhhhhhCcC
Q 033791 61 LASHLCRAAFNHAKSHSMSIIPT--CSYVSDTYLPRNPT 97 (111)
Q Consensus 61 ig~~L~~~~~~~a~~~g~~~i~~--cs~~~~~~~~~~p~ 97 (111)
+-+.=++.++++|+++|+.++|. .|--...++..+|+
T Consensus 79 YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pe 117 (326)
T cd06564 79 YTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPE 117 (326)
T ss_pred ccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHH
Confidence 78889999999999999999985 44444344444454
No 184
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.96 E-value=78 Score=24.01 Aligned_cols=42 Identities=7% Similarity=0.201 Sum_probs=34.7
Q ss_pred CCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
|...|.--|..-+..++++|.+.|++.+.+..|...+| .|.+
T Consensus 39 ~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~-~Rp~ 80 (253)
T PRK14832 39 PRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENW-QRPI 80 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhc-CCCH
Confidence 44567778999999999999999999999988888666 4554
No 185
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.93 E-value=1e+02 Score=23.02 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=34.4
Q ss_pred CCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
|...|.--|..-+..++++|.+.|++.+.+..|...+| .|.+
T Consensus 25 ~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~-~R~~ 66 (233)
T PRK14833 25 ARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENW-KRPK 66 (233)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhc-CcCH
Confidence 34457778899999999999999999999999988666 4544
No 186
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.50 E-value=1.2e+02 Score=19.25 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=26.0
Q ss_pred EECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhC
Q 033791 51 YVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 51 ~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~ 95 (111)
.|--++.|. .+. +-.+++.|+++|++++..+.... .-+.+.
T Consensus 50 ~I~iS~sG~--t~e-~~~~~~~a~~~g~~vi~iT~~~~-s~la~~ 90 (126)
T cd05008 50 VIAISQSGE--TAD-TLAALRLAKEKGAKTVAITNVVG-STLARE 90 (126)
T ss_pred EEEEeCCcC--CHH-HHHHHHHHHHcCCeEEEEECCCC-ChHHHh
Confidence 333344443 244 45668999999999998877655 334444
No 187
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=23.47 E-value=1.2e+02 Score=21.27 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHCCCcEEeeccchhhhhhh
Q 033791 62 ASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLP 93 (111)
Q Consensus 62 g~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~ 93 (111)
..-+++.+++.|.+.|+++..-..+-. .|+.
T Consensus 63 ~~d~l~~~L~~A~~~Gmkv~~Gl~~~~-~~w~ 93 (166)
T PF14488_consen 63 PVDLLEMILDAADKYGMKVFVGLYFDP-DYWD 93 (166)
T ss_pred cccHHHHHHHHHHHcCCEEEEeCCCCc-hhhh
Confidence 356999999999999999998888887 5665
No 188
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=23.43 E-value=45 Score=20.23 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=11.0
Q ss_pred CCCCCCccHHHHH
Q 033791 53 PSSKRGLGLASHL 65 (111)
Q Consensus 53 ~p~~rgqGig~~L 65 (111)
+|+||.+-||+.|
T Consensus 53 hPqYrn~~iA~LL 65 (67)
T PF03376_consen 53 HPQYRNQQIAALL 65 (67)
T ss_pred CchhcCHHHHHHh
Confidence 6899999998765
No 189
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=23.42 E-value=59 Score=20.01 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=18.5
Q ss_pred EEEECCCCCCccHHHHHHHHHH
Q 033791 49 HTYVPSSKRGLGLASHLCRAAF 70 (111)
Q Consensus 49 ~~~V~p~~rgqGig~~L~~~~~ 70 (111)
-+..||+..|+.+.+++.+.+-
T Consensus 49 IiltD~D~aG~~i~~~~~~~l~ 70 (81)
T cd01027 49 IILTDPDRKGEKIRKKLSEYLS 70 (81)
T ss_pred EEEECCCHHHHHHHHHHHHHhc
Confidence 3678999999999999888764
No 190
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=22.88 E-value=82 Score=24.59 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHCCCcEEee--ccchhhhhhhhCcC
Q 033791 61 LASHLCRAAFNHAKSHSMSIIPT--CSYVSDTYLPRNPT 97 (111)
Q Consensus 61 ig~~L~~~~~~~a~~~g~~~i~~--cs~~~~~~~~~~p~ 97 (111)
+-+.=++.++++|+++|+.++|. .|--...++..+|+
T Consensus 67 YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p~ 105 (348)
T cd06562 67 YTPEDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGYPE 105 (348)
T ss_pred ECHHHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhChh
Confidence 78889999999999999999985 44444345555554
No 191
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=22.88 E-value=1.1e+02 Score=20.64 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=28.5
Q ss_pred EEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhC
Q 033791 50 TYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 50 ~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~ 95 (111)
+.+--++.|. ..-+-.+++.|+++|.+++.+++... .-+.+.
T Consensus 82 ~~i~iS~sG~---t~~~~~~~~~a~~~g~~ii~iT~~~~-s~l~~~ 123 (154)
T TIGR00441 82 VLLGISTSGN---SKNVLKAIEAAKDKGMKTITLAGKDG-GKMAGL 123 (154)
T ss_pred EEEEEcCCCC---CHHHHHHHHHHHHCCCEEEEEeCCCC-Cchhhh
Confidence 3444445554 34556678999999999999888766 445543
No 192
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=22.88 E-value=40 Score=19.87 Aligned_cols=11 Identities=18% Similarity=1.002 Sum_probs=9.3
Q ss_pred hhhhhCcCccc
Q 033791 90 TYLPRNPTWNS 100 (111)
Q Consensus 90 ~~~~~~p~y~~ 100 (111)
.|++.||.|..
T Consensus 16 ~fie~hP~WDQ 26 (57)
T PF10929_consen 16 DFIETHPNWDQ 26 (57)
T ss_pred HHHHcCCCchH
Confidence 69999999864
No 193
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=22.83 E-value=2.3e+02 Score=21.74 Aligned_cols=46 Identities=7% Similarity=0.002 Sum_probs=35.2
Q ss_pred EEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhh
Q 033791 46 DLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTY 91 (111)
Q Consensus 46 ~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~ 91 (111)
.+..+-++|..-|+.-=-.+++++++++++.+=--+.+|.-+++.|
T Consensus 246 ~~~~i~lHp~i~G~p~R~~~L~~~l~~i~~~~~VW~at~~eIA~~~ 291 (297)
T TIGR03212 246 KMMSIGLHCRLVGRPGRIAALQRFLDYVQSHDKVWVARRIDIARHW 291 (297)
T ss_pred ceEEEecCccccCCHHHHHHHHHHHHHHHhCCCEEEEcHHHHHHHH
Confidence 4677888888888888888888888888887555567788877433
No 194
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.60 E-value=83 Score=23.46 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=33.2
Q ss_pred CCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 55 SKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 55 ~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
...|.--|..-+..++++|.+.|++.+.+..|...+| .|.+
T Consensus 15 ~~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~-~R~~ 55 (229)
T PRK10240 15 RAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENW-NRPA 55 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeeehhhc-CcCH
Confidence 3445567889999999999999999999999888666 4443
No 195
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=22.32 E-value=48 Score=26.78 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=38.6
Q ss_pred CCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCcCccc
Q 033791 56 KRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNPTWNS 100 (111)
Q Consensus 56 ~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p~y~~ 100 (111)
.|---|...|++..++.|+.+-.+-+-+|-..+ +.+++|..|-.
T Consensus 251 lr~v~ip~~l~~~Fl~la~~NT~knlETCGiL~-g~L~~n~f~IT 294 (424)
T KOG2880|consen 251 LRDVHIPERLMEVFLQLAKSNTKKNLETCGILA-GKLERNEFYIT 294 (424)
T ss_pred ceEEEecHHHHHHHHHHHhhcccccchHHHHhh-hHhhcCcEEEE
Confidence 555667889999999999999999999999999 89999988754
No 196
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=22.11 E-value=86 Score=22.96 Aligned_cols=39 Identities=5% Similarity=0.185 Sum_probs=30.1
Q ss_pred CCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 57 RGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 57 rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
.|..-|..-+..++++|.+.|++.+.+-.|...+| .|.+
T Consensus 18 ~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~-~R~~ 56 (223)
T PF01255_consen 18 EGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENW-KRPK 56 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGG-GS-H
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhh-cCCH
Confidence 45567888899999999999999999888887566 4544
No 197
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=22.00 E-value=1.7e+02 Score=16.79 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=22.7
Q ss_pred EEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeecc
Q 033791 47 LVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCS 85 (111)
Q Consensus 47 i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs 85 (111)
+..+|+.++.+.+. ++.+++.+++.|+++.....
T Consensus 18 i~~l~~~~~~~~~~-----~~~i~~~~~~~~i~v~~v~~ 51 (76)
T PF08032_consen 18 IKKLFVTEEKADKR-----IKEILKLAKKKGIPVYEVSK 51 (76)
T ss_dssp EEEEEEETT---CC-----THHHHHHHHHCT-EEEEE-H
T ss_pred ccEEEEEcCccchh-----HHHHHHHHHHcCCeEEEeCH
Confidence 78899999865555 57778889999988765443
No 198
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.94 E-value=84 Score=23.59 Aligned_cols=42 Identities=10% Similarity=0.220 Sum_probs=34.1
Q ss_pred CCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
|...|.--|..-+..++++|.+.|++.+.+..|...+| .|.+
T Consensus 35 ~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~-kR~~ 76 (243)
T PRK14829 35 KRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENW-KRSP 76 (243)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhh-CCCH
Confidence 44557778999999999999999999999999966455 5554
No 199
>PF10283 zf-CCHH: Zinc-finger (CX5CX6HX5H) motif; InterPro: IPR019406 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type Znf motif that in humans is part of the APLF (aprataxin- and PNK-like) forkead association domain-containing protein []. The Znf is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues, and is configured CX5CX6HX5H. Many of the proteins containing this Znf are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism. This Znf motif appears to be specialised for the non-covalent binding of poly ADP-ribose; Aprataxin also appears to covalently bind poly ADP-ribose, but not through its Znf motif [].; PDB: 2KQC_A 2KUO_A 2KQE_A 2KQD_A 2KQB_A.
Probab=21.92 E-value=73 Score=15.72 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=12.0
Q ss_pred eeccchhhhhhhhCcCccccccc
Q 033791 82 PTCSYVSDTYLPRNPTWNSIIYS 104 (111)
Q Consensus 82 ~~cs~~~~~~~~~~p~y~~l~~~ 104 (111)
|.|+|-+ .=+++||+-..-..+
T Consensus 1 p~C~YG~-~CYRkNp~H~~~f~H 22 (26)
T PF10283_consen 1 PPCKYGA-KCYRKNPQHFKEFSH 22 (26)
T ss_dssp EE-TTGG-G-S--SCCHHHHCES
T ss_pred CCCCcch-hhhcCCHHHHhhcCC
Confidence 5799999 677999974444433
No 200
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=21.91 E-value=1.5e+02 Score=22.82 Aligned_cols=52 Identities=12% Similarity=0.041 Sum_probs=40.3
Q ss_pred cEEEEEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhh-hhhCcCcccccc
Q 033791 43 KVMDLVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTY-LPRNPTWNSIIY 103 (111)
Q Consensus 43 ~~~~i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~-~~~~p~y~~l~~ 103 (111)
-...++.+..+|-+|.. .++++|+++|+.+.+-+|+.. .- +.++|..+++-.
T Consensus 157 ~~p~~NQIe~hp~~~q~--------el~~~~~~~gI~v~AysPL~~-g~~l~~~~~l~~Ia~ 209 (280)
T COG0656 157 VKPAVNQIEYHPYLRQP--------ELLPFCQRHGIAVEAYSPLAK-GGKLLDNPVLAEIAK 209 (280)
T ss_pred CCCceEEEEeccCCCcH--------HHHHHHHHcCCEEEEECCccc-ccccccChHHHHHHH
Confidence 34788999999999984 388999999999999999986 33 556666555433
No 201
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.86 E-value=1.3e+02 Score=17.13 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=17.4
Q ss_pred HHHHHHHHHHCCCcEEeeccch
Q 033791 66 CRAAFNHAKSHSMSIIPTCSYV 87 (111)
Q Consensus 66 ~~~~~~~a~~~g~~~i~~cs~~ 87 (111)
++.+++.|+++|++.+..+-..
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCC
Confidence 6788999999999988665443
No 202
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=21.84 E-value=35 Score=28.12 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=18.7
Q ss_pred CCCCCCccHHHH--HHHHHHHHHHHCCCcEEee
Q 033791 53 PSSKRGLGLASH--LCRAAFNHAKSHSMSIIPT 83 (111)
Q Consensus 53 ~p~~rgqGig~~--L~~~~~~~a~~~g~~~i~~ 83 (111)
.|+-+.-|||.. .+..+++++++.|..++++
T Consensus 6 Lrs~~~~GIGDfg~dl~~~~d~~~~~G~~i~ql 38 (496)
T PF02446_consen 6 LRSPRSWGIGDFGDDLYQFIDWAAEAGQSIWQL 38 (496)
T ss_dssp S-SSS--SS--SSHHHHHHHHHHHHCT--EEE-
T ss_pred CCCCCCCceecHHHHHHHHHHHHHHcCCCeecc
Confidence 455565688887 7889999999999887754
No 203
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=21.79 E-value=1e+02 Score=19.77 Aligned_cols=50 Identities=6% Similarity=0.099 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhh---hCcCcccccccCCCCC
Q 033791 59 LGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLP---RNPTWNSIIYSEDPRS 109 (111)
Q Consensus 59 qGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~---~~p~y~~l~~~~~~~~ 109 (111)
-+++...+-..+.++...+......||-+. .|+. .+|.++..+..++.++
T Consensus 65 ~T~ADi~l~~~~~~~~~~~~~~~~~~P~l~-~~~~rv~~~p~v~~~~~~~~~~~ 117 (126)
T cd03210 65 ISFADYNLFDLLDIHLVLAPGCLDAFPLLK-AFVERLSARPKLKAYLESDAFKN 117 (126)
T ss_pred ccHHHHHHHHHHHHHHHhChHhhhcChHHH-HHHHHHHhCcHHHHHHhCcCCCC
Confidence 367777777777776643333355677666 4555 6688999888877654
No 204
>PLN02862 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Probab=21.65 E-value=1.1e+02 Score=22.87 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=26.8
Q ss_pred EEEEEEE--ECCCCCCccHHHHHHHHHHHHHHHCCCcEE
Q 033791 45 MDLVHTY--VPSSKRGLGLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 45 ~~i~~~~--V~p~~rgqGig~~L~~~~~~~a~~~g~~~i 81 (111)
..|...| .||+|+|. =+..|++++++.+++.|+.+.
T Consensus 114 GDIG~~FPdtd~~~Kg~-~S~~lL~~a~~ll~~~G~~I~ 151 (216)
T PLN02862 114 PDIGQIFPDTDPKWKGA-DSSVFIKEAVRLMHEAGYEIG 151 (216)
T ss_pred CcccccCCCCChhhCCC-CHHHHHHHHHHHHHHcCCEEE
Confidence 3555566 35556554 378999999999999999865
No 205
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=21.55 E-value=93 Score=19.33 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHHHHHHHCCCcEEe
Q 033791 59 LGLASHLCRAAFNHAKSHSMSIIP 82 (111)
Q Consensus 59 qGig~~L~~~~~~~a~~~g~~~i~ 82 (111)
-|+.+.-+.+.++..|+.|+.|-.
T Consensus 29 LgiSRtaVwK~Iq~Lr~~G~~I~s 52 (79)
T COG1654 29 LGISRTAVWKHIQQLREEGVDIES 52 (79)
T ss_pred HCccHHHHHHHHHHHHHhCCceEe
Confidence 478888999999999999998763
No 206
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.43 E-value=1e+02 Score=23.78 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHCCCcEEee--ccchhhhhhhhCcCc
Q 033791 61 LASHLCRAAFNHAKSHSMSIIPT--CSYVSDTYLPRNPTW 98 (111)
Q Consensus 61 ig~~L~~~~~~~a~~~g~~~i~~--cs~~~~~~~~~~p~y 98 (111)
+-+.=+..++++|+++|+.++|. -|--...++..+|++
T Consensus 65 yT~~di~elv~yA~~rgI~vIPEId~PGH~~a~~~~ypel 104 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPEIDVPGHASAIAVAYPEL 104 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEeecCccchHHHHHhCHHh
Confidence 78889999999999999999985 333333344445553
No 207
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.37 E-value=1.2e+02 Score=21.44 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 64 HLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 64 ~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
.-+-.+++.|+++|.+++.++++.. .-+.+..
T Consensus 125 ~~~i~~~~~ak~~g~~iI~iT~~~~-s~l~~~a 156 (192)
T PRK00414 125 GNIIKAIEAARAKGMKVITLTGKDG-GKMAGLA 156 (192)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCC-ChhHHhC
Confidence 3445678999999999999988876 4455543
No 208
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=21.29 E-value=1.4e+02 Score=16.34 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHCCCcEEee
Q 033791 63 SHLCRAAFNHAKSHSMSIIPT 83 (111)
Q Consensus 63 ~~L~~~~~~~a~~~g~~~i~~ 83 (111)
+.+=..+..+|+++|...+..
T Consensus 18 ~~~r~~~E~~Ar~~G~~~IT~ 38 (45)
T PF08369_consen 18 KKLRDAAEKYARERGYDEITV 38 (45)
T ss_dssp HHHHHHHHHHHHHCT-SEE-H
T ss_pred HHHHHHHHHHHHHcCCCeECH
Confidence 456677889999999987753
No 209
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=21.21 E-value=1.7e+02 Score=24.64 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=32.3
Q ss_pred EEEEEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccc
Q 033791 47 LVHTYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSY 86 (111)
Q Consensus 47 i~~~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~ 86 (111)
-+.+-|+-.|--+|+-.++.. ..|||+++.+.+..|--
T Consensus 364 adGilvPGGFG~RGveG~i~A--ak~ARen~iP~LGiCLG 401 (585)
T KOG2387|consen 364 ADGILVPGGFGDRGVEGKILA--AKWARENKIPFLGICLG 401 (585)
T ss_pred CCeEEeCCcccccchhHHHHH--HHHHHhcCCCeEeeehh
Confidence 456889999999999888765 59999999999888854
No 210
>PF05484 LRV_FeS: LRV protein FeS4 cluster; InterPro: IPR008665 This iron sulphur cluster is found at the N terminus of some proteins containing leucine-repeat variant (LRV) repeats (IPR004830 from INTERPRO). These proteins have a two-domain structure, composed of a small N-terminal domain containing a cluster of four Cys residues that houses the 4Fe:4S cluster, and a larger C-terminal domain containing the LRV repeats []. Biochemical studies revealed that the 4Fe:4S cluster is sensitive to oxygen, but does not appear to have reversible redox activity.; PDB: 1LRV_A.
Probab=21.11 E-value=47 Score=19.58 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=8.2
Q ss_pred hhhhhCcCccc
Q 033791 90 TYLPRNPTWNS 100 (111)
Q Consensus 90 ~~~~~~p~y~~ 100 (111)
.||..||++.+
T Consensus 45 RFF~~NP~lA~ 55 (57)
T PF05484_consen 45 RFFRWNPDLAD 55 (57)
T ss_dssp HHHHH-GGGGG
T ss_pred HHHHhChHhhh
Confidence 58999998875
No 211
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=20.92 E-value=1.3e+02 Score=20.66 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=26.8
Q ss_pred EEECCCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhC
Q 033791 50 TYVPSSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRN 95 (111)
Q Consensus 50 ~~V~p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~ 95 (111)
+.|--++.|. .+.+ -.+++.|+++|++++..+.... .-+.+.
T Consensus 75 v~I~iS~sG~--t~~~-i~~~~~ak~~g~~ii~IT~~~~-s~la~~ 116 (179)
T TIGR03127 75 LLIAISGSGE--TESL-VTVAKKAKEIGATVAAITTNPE-STLGKL 116 (179)
T ss_pred EEEEEeCCCC--cHHH-HHHHHHHHHCCCeEEEEECCCC-CchHHh
Confidence 4444455553 3444 4557789999999998877665 344444
No 212
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.71 E-value=86 Score=24.36 Aligned_cols=42 Identities=10% Similarity=0.226 Sum_probs=34.2
Q ss_pred CCCCCccHHHHHHHHHHHHHHHCCCcEEeeccchhhhhhhhCc
Q 033791 54 SSKRGLGLASHLCRAAFNHAKSHSMSIIPTCSYVSDTYLPRNP 96 (111)
Q Consensus 54 p~~rgqGig~~L~~~~~~~a~~~g~~~i~~cs~~~~~~~~~~p 96 (111)
+...|.-.|..-+..++++|.+.|++.+.+..|...+| .|.+
T Consensus 88 ~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~-kR~~ 129 (296)
T PRK14827 88 ARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENW-KRSP 129 (296)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhh-cCCH
Confidence 44556668899999999999999999999999976555 5655
No 213
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.64 E-value=1.3e+02 Score=17.42 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHCCCcEEeec
Q 033791 64 HLCRAAFNHAKSHSMSIIPTC 84 (111)
Q Consensus 64 ~L~~~~~~~a~~~g~~~i~~c 84 (111)
.-+..+++.++++|.+++..+
T Consensus 61 ~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 61 EELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 335557899999999988765
No 214
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=20.33 E-value=81 Score=20.42 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=18.1
Q ss_pred CCccHHHHHHHHHHHHHHHCCCc
Q 033791 57 RGLGLASHLCRAAFNHAKSHSMS 79 (111)
Q Consensus 57 rgqGig~~L~~~~~~~a~~~g~~ 79 (111)
+.+|+....++.+++.+.+.|+-
T Consensus 2 ~~kg~~~e~I~~vi~~l~~~gyi 24 (121)
T PF02631_consen 2 KRKGFSEEAIEEVIDRLKELGYI 24 (121)
T ss_dssp HHTT--HHHHHHHHHHHHHTTSS
T ss_pred cccCCCHHHHHHHHHHHHHcCCC
Confidence 35789999999999999999983
No 215
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=20.24 E-value=1.3e+02 Score=21.21 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=26.3
Q ss_pred EEEEEE--ECCCCCCccHHHHHHHHHHHHHHHCCCcEE
Q 033791 46 DLVHTY--VPSSKRGLGLASHLCRAAFNHAKSHSMSII 81 (111)
Q Consensus 46 ~i~~~~--V~p~~rgqGig~~L~~~~~~~a~~~g~~~i 81 (111)
.|...| .+|+|+|. =+..|++++++.+++.|+++.
T Consensus 55 DIG~~Fp~~d~~~k~~-~S~~lL~~~~~~~~~~g~~i~ 91 (153)
T cd00554 55 DIGEHFPDTDPKWKGA-DSRILLEEALKLIREKGYEIV 91 (153)
T ss_pred cccccCCCCChhhCCC-CHHHHHHHHHHHHHHcCCEEE
Confidence 344444 35667775 578999999999999998864
Done!