Query 033793
Match_columns 111
No_of_seqs 206 out of 1039
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:21:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10254 thioesterase; Provisi 99.9 4.1E-21 8.8E-26 128.4 10.0 73 38-110 23-96 (137)
2 PRK10293 acyl-CoA esterase; Pr 99.9 3.1E-21 6.7E-26 128.8 9.2 74 38-111 23-97 (136)
3 PLN02322 acyl-CoA thioesterase 99.8 1.1E-20 2.3E-25 128.4 10.0 74 38-111 15-88 (154)
4 PRK11688 hypothetical protein; 99.8 3.4E-19 7.4E-24 120.8 9.7 94 1-109 4-113 (154)
5 KOG3328 HGG motif-containing t 99.8 1.6E-19 3.5E-24 120.6 6.0 78 33-111 22-99 (148)
6 TIGR02286 PaaD phenylacetic ac 99.8 8.5E-19 1.9E-23 113.2 8.6 72 38-111 3-74 (114)
7 COG2050 PaaI HGG motif-contain 99.8 1.2E-18 2.5E-23 116.5 8.1 74 38-111 23-97 (141)
8 TIGR00369 unchar_dom_1 unchara 99.8 3.1E-18 6.7E-23 110.8 8.9 73 38-110 5-78 (117)
9 TIGR02447 yiiD_Cterm thioester 99.7 3.7E-16 8E-21 104.4 9.4 72 38-110 11-86 (138)
10 cd03443 PaaI_thioesterase PaaI 99.5 1.2E-13 2.6E-18 87.6 9.2 71 39-109 2-73 (113)
11 PF14539 DUF4442: Domain of un 99.5 1.2E-13 2.6E-18 91.6 9.2 72 38-109 18-90 (132)
12 PRK10694 acyl-CoA esterase; Pr 99.4 2.7E-12 5.9E-17 85.4 7.5 65 46-111 7-72 (133)
13 cd03442 BFIT_BACH Brown fat-in 99.2 6.2E-11 1.4E-15 76.0 7.9 65 46-111 3-68 (123)
14 COG1607 Acyl-CoA hydrolase [Li 99.2 6E-11 1.3E-15 80.8 7.7 64 47-111 10-74 (157)
15 KOG4781 Uncharacterized conser 99.1 3.3E-10 7.1E-15 80.8 6.3 66 45-110 121-186 (237)
16 PF03061 4HBT: Thioesterase su 99.0 1.1E-09 2.3E-14 65.1 6.0 47 65-111 1-48 (79)
17 PF09500 YiiD_Cterm: Putative 98.8 4.3E-08 9.3E-13 66.0 9.5 86 4-109 2-91 (144)
18 PRK04424 fatty acid biosynthes 98.8 2.5E-08 5.4E-13 69.6 8.7 66 42-111 76-143 (185)
19 PLN02647 acyl-CoA thioesterase 98.8 2E-08 4.4E-13 78.2 8.0 65 46-111 286-351 (437)
20 cd00556 Thioesterase_II Thioes 98.6 9.2E-08 2E-12 59.2 5.9 47 65-111 14-60 (99)
21 PLN02647 acyl-CoA thioesterase 98.5 5.1E-07 1.1E-11 70.4 8.0 71 41-111 78-162 (437)
22 cd00586 4HBT 4-hydroxybenzoyl- 98.2 5E-06 1.1E-10 51.1 6.4 59 53-111 3-69 (110)
23 cd03440 hot_dog The hotdog fol 98.0 5.7E-05 1.2E-09 43.6 7.3 59 53-111 3-62 (100)
24 KOG2763 Acyl-CoA thioesterase 97.9 3.5E-05 7.6E-10 58.7 6.7 68 43-111 192-260 (357)
25 TIGR02799 thio_ybgC tol-pal sy 97.1 0.0024 5.3E-08 40.8 6.0 59 53-111 3-70 (126)
26 TIGR00051 acyl-CoA thioester h 96.7 0.0064 1.4E-07 38.1 5.6 57 55-111 2-66 (117)
27 PRK10800 acyl-CoA thioesterase 96.3 0.033 7E-07 36.0 7.4 60 52-111 4-71 (130)
28 COG0824 FcbC Predicted thioest 95.9 0.048 1E-06 36.1 6.5 62 50-111 5-74 (137)
29 PF13622 4HBT_3: Thioesterase- 95.7 0.028 6E-07 40.3 5.1 42 65-110 9-50 (255)
30 cd03449 R_hydratase (R)-hydrat 95.1 0.065 1.4E-06 34.1 5.0 44 64-111 44-87 (128)
31 cd03445 Thioesterase_II_repeat 94.9 0.073 1.6E-06 33.0 4.7 42 64-110 14-55 (94)
32 PF13279 4HBT_2: Thioesterase- 94.5 0.25 5.4E-06 31.1 6.5 54 57-111 1-61 (121)
33 PRK07531 bifunctional 3-hydrox 94.4 0.19 4.2E-06 39.9 7.0 62 50-111 345-413 (495)
34 cd03441 R_hydratase_like (R)-h 93.8 0.12 2.5E-06 32.7 3.8 45 64-111 41-85 (127)
35 COG4109 Predicted transcriptio 90.8 1.1 2.4E-05 34.8 6.4 55 55-110 337-391 (432)
36 PF01575 MaoC_dehydratas: MaoC 90.6 0.9 2E-05 29.0 5.1 45 64-111 49-93 (122)
37 cd01288 FabZ FabZ is a 17kD be 87.6 5.2 0.00011 25.3 8.5 69 43-111 13-92 (131)
38 PRK00006 fabZ (3R)-hydroxymyri 87.2 6.4 0.00014 25.8 9.2 69 43-111 28-106 (147)
39 cd03455 SAV4209 SAV4209 is a S 86.4 2 4.3E-05 27.4 4.6 40 67-111 45-84 (123)
40 cd03447 FAS_MaoC FAS_MaoC, the 85.1 3.3 7.1E-05 26.9 5.1 43 66-111 43-85 (126)
41 cd03453 SAV4209_like SAV4209_l 84.0 3.4 7.3E-05 26.5 4.8 41 66-111 45-85 (127)
42 cd03448 HDE_HSD HDE_HSD The R 83.0 4.5 9.7E-05 26.1 5.1 44 65-111 44-87 (122)
43 TIGR00189 tesB acyl-CoA thioes 79.5 3.3 7.3E-05 29.9 4.0 40 66-110 21-60 (271)
44 cd03450 NodN NodN (nodulation 74.8 3.8 8.2E-05 27.5 2.9 44 66-111 57-102 (149)
45 cd03446 MaoC_like MoaC_like 74.6 2.9 6.2E-05 27.0 2.2 43 66-111 51-95 (140)
46 cd00493 FabA_FabZ FabA/Z, beta 73.8 19 0.00041 22.5 8.8 70 42-111 11-93 (131)
47 PLN02868 acyl-CoA thioesterase 73.5 7.5 0.00016 30.2 4.6 62 40-109 135-196 (413)
48 cd03451 FkbR2 FkbR2 is a Strep 73.2 4 8.6E-05 26.5 2.7 43 65-111 53-96 (146)
49 PRK10526 acyl-CoA thioesterase 69.4 13 0.00028 27.5 4.9 60 41-110 12-71 (286)
50 TIGR01750 fabZ beta-hydroxyacy 68.4 29 0.00063 22.3 7.9 69 43-111 21-102 (140)
51 cd03452 MaoC_C MaoC_C The C-t 67.3 13 0.00027 24.4 4.1 42 66-111 51-93 (142)
52 PRK08190 bifunctional enoyl-Co 67.3 16 0.00035 29.0 5.4 42 66-111 59-100 (466)
53 COG5496 Predicted thioesterase 64.2 40 0.00086 22.4 7.4 48 64-111 27-75 (130)
54 PLN02864 enoyl-CoA hydratase 63.9 19 0.00042 27.0 5.0 43 66-111 228-270 (310)
55 KOG2763 Acyl-CoA thioesterase 63.0 18 0.0004 28.0 4.7 54 57-110 15-78 (357)
56 PRK04156 gltX glutamyl-tRNA sy 57.2 46 0.001 27.4 6.3 31 46-81 97-128 (567)
57 PRK13693 (3R)-hydroxyacyl-ACP 54.1 37 0.0008 22.3 4.6 41 65-110 54-94 (142)
58 cd03454 YdeM YdeM is a Bacillu 52.8 25 0.00054 22.6 3.6 42 67-111 50-93 (140)
59 COG3510 CmcI Cephalosporin hyd 48.7 7.7 0.00017 27.9 0.6 49 54-107 65-113 (237)
60 PF07862 Nif11: Nitrogen fixat 46.9 15 0.00033 19.6 1.5 24 1-26 1-24 (49)
61 cd03444 Thioesterase_II_repeat 46.4 69 0.0015 19.8 5.6 45 65-109 14-63 (104)
62 PF08671 SinI: Anti-repressor 42.2 19 0.00042 17.7 1.3 12 1-12 17-28 (30)
63 TIGR00541 hisDCase_pyru histid 40.8 3.7 8E-05 30.6 -2.0 70 2-75 208-279 (310)
64 PF07977 FabA: FabA-like domai 40.7 97 0.0021 19.8 8.3 61 51-111 27-101 (138)
65 PF11569 Homez: Homeodomain le 39.3 23 0.0005 20.1 1.5 14 1-14 37-50 (56)
66 COG2030 MaoC Acyl dehydratase 38.8 50 0.0011 22.1 3.4 13 99-111 99-111 (159)
67 PRK13188 bifunctional UDP-3-O- 37.9 2.2E+02 0.0047 23.0 9.3 69 43-111 342-420 (464)
68 PRK13692 (3R)-hydroxyacyl-ACP 37.8 36 0.00077 23.0 2.6 18 94-111 84-101 (159)
69 PF04989 CmcI: Cephalosporin h 36.7 23 0.00051 25.3 1.6 44 56-104 30-73 (206)
70 KOG3016 Acyl-CoA thioesterase 34.8 67 0.0014 24.3 3.7 64 40-109 13-76 (294)
71 TIGR00463 gltX_arch glutamyl-t 34.6 1.6E+02 0.0035 24.3 6.2 31 47-82 90-121 (560)
72 TIGR00531 BCCP acetyl-CoA carb 31.1 74 0.0016 21.5 3.3 14 1-14 1-14 (156)
73 KOG1491 Predicted GTP-binding 30.3 70 0.0015 25.0 3.3 64 1-72 276-340 (391)
74 PF04485 NblA: Phycobilisome d 28.4 43 0.00094 18.7 1.4 12 1-12 22-33 (53)
75 PRK06302 acetyl-CoA carboxylas 28.3 1E+02 0.0023 20.7 3.6 14 1-14 1-14 (155)
76 PF09425 CCT_2: Divergent CCT 27.9 38 0.00083 16.3 1.0 11 4-14 6-16 (27)
77 PF03818 MadM: Malonate/sodium 26.5 96 0.0021 17.8 2.6 19 64-82 35-53 (60)
78 COG5007 Predicted transcriptio 25.6 65 0.0014 19.5 1.9 15 1-15 1-15 (80)
79 PF11079 YqhG: Bacterial prote 25.1 71 0.0015 23.7 2.4 14 1-14 1-14 (260)
80 PRK13691 (3R)-hydroxyacyl-ACP 25.0 63 0.0014 21.9 2.1 17 95-111 85-101 (166)
81 TIGR00189 tesB acyl-CoA thioes 23.6 2.8E+02 0.0061 19.8 7.3 59 51-110 167-230 (271)
82 PRK10526 acyl-CoA thioesterase 20.6 3.5E+02 0.0075 19.9 5.4 46 66-111 192-243 (286)
83 PF11338 DUF3140: Protein of u 20.5 71 0.0015 19.9 1.5 14 1-14 8-21 (92)
84 PF10281 Ish1: Putative stress 20.1 91 0.002 15.6 1.6 13 2-14 5-17 (38)
85 cd06424 UGGPase UGGPase cataly 20.1 1.2E+02 0.0027 23.0 3.0 16 63-80 118-133 (315)
86 TIGR02278 PaaN-DH phenylacetic 20.0 1.2E+02 0.0026 25.4 3.1 41 67-111 575-616 (663)
No 1
>PRK10254 thioesterase; Provisional
Probab=99.86 E-value=4.1e-21 Score=128.36 Aligned_cols=73 Identities=25% Similarity=0.274 Sum_probs=67.6
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEEeecCCCCC
Q 033793 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGG 110 (111)
Q Consensus 38 ~~gl~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~-~~~~~vT~~l~i~fl~p~~~G 110 (111)
++|+++.++++|+++++++++++|+|+.|++|||++++|+|+++++|+.... ++...+|+++++|||||++.|
T Consensus 23 ~LGi~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~~g 96 (137)
T PRK10254 23 HLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVSEG 96 (137)
T ss_pred hhCcEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCcCC
Confidence 3699999999999999999999999999999999999999999999987543 566789999999999999876
No 2
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.86 E-value=3.1e-21 Score=128.76 Aligned_cols=74 Identities=24% Similarity=0.341 Sum_probs=67.7
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEEeecCCCCCC
Q 033793 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 38 ~~gl~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~-~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
++|+++.++++|+++++++++++|+|+.|.+|||++++|+|+++++++.... ++...+|+++++||++|++.|.
T Consensus 23 ~LGi~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~g~ 97 (136)
T PRK10293 23 LLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGR 97 (136)
T ss_pred hcCcEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCCce
Confidence 4799999999999999999999999999999999999999999998887654 4557899999999999999873
No 3
>PLN02322 acyl-CoA thioesterase
Probab=99.85 E-value=1.1e-20 Score=128.41 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=66.8
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCCC
Q 033793 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 38 ~~gl~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
.+|+++.++++|+++++++++++|+|+.|++|||++++|+|+++++++.........+|+++++||+||++.|+
T Consensus 15 ~LGi~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa~~G~ 88 (154)
T PLN02322 15 MLGFEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMASGFKRVAGIQLSINHLKSADLGD 88 (154)
T ss_pred HCCCEEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccCCCCC
Confidence 37999999999999999999999999999999999999999999988765443346899999999999999874
No 4
>PRK11688 hypothetical protein; Provisional
Probab=99.80 E-value=3.4e-19 Score=120.84 Aligned_cols=94 Identities=26% Similarity=0.352 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHcCCCCCCCccccccccCChhhhhhhhhcCeEEEEecCCEEEEEEEcCCCccC--CCCcccHHHHHHHHH
Q 033793 1 MELESVKRYLEKGGGGDDDKNKSTMEEMPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLN--AGNFMHGGATATLVD 78 (111)
Q Consensus 1 ~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~g~~~~~~~~~~~~~n--~~G~lHGG~i~tl~D 78 (111)
|+++++++.++..-.. . .+ |.. ++|++++++++|.++++++++++|+| +.|.+|||++++|+|
T Consensus 4 ~~~~~~~~~~~~~~~~-~-----------~p-f~~--~lG~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D 68 (154)
T PRK11688 4 LTQEEALKLVGEIFVY-H-----------MP-FNR--LLGLELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLD 68 (154)
T ss_pred cCHHHHHHHHHHHHHh-c-----------CC-HHH--HhCcEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHH
Confidence 6778887777764410 0 11 344 36999999999999999999999995 689999999999999
Q ss_pred HHHHHHHHHhCC--------------CCeeeeEEEEEEeecCCCC
Q 033793 79 LVGSAAIFTVGA--------------PSVGVSVEINVSYLDAAFG 109 (111)
Q Consensus 79 ~a~~~a~~~~~~--------------~~~~vT~~l~i~fl~p~~~ 109 (111)
.+++++++.... ...++|+++++||+||++.
T Consensus 69 ~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~g 113 (154)
T PRK11688 69 VAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGRG 113 (154)
T ss_pred HHHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCCC
Confidence 999999876431 1245899999999999973
No 5
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=99.79 E-value=1.6e-19 Score=120.59 Aligned_cols=78 Identities=49% Similarity=0.760 Sum_probs=71.9
Q ss_pred hhhhhhcCeEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCCC
Q 033793 33 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 33 ~~~~~~~gl~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
|++.. .++++..+++|+++++|+++++|+|+++++|||++|+|+|.++++|+....+..+.|+++|+|+||+|+++||
T Consensus 22 Fd~~~-~~i~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdLsvsyL~~AklGe 99 (148)
T KOG3328|consen 22 FDRVL-NNIRIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMTSGFKPGVSVDLSVSYLSSAKLGE 99 (148)
T ss_pred hhhhc-CceEEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhccCCCCceEEEEEhhhccccCCCC
Confidence 56553 8999999999999999999999999999999999999999999998777666678999999999999999997
No 6
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.79 E-value=8.5e-19 Score=113.15 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=64.9
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCCC
Q 033793 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 38 ~~gl~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
.+|+++.++++|+++++++++++|+|+.|++|||++++++|.++++++.... ...+|++++++|+||++.||
T Consensus 3 ~lg~~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~~--~~~~t~~~~i~f~rp~~~G~ 74 (114)
T TIGR02286 3 ALGIDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSYG--DAAVAAQCTIDFLRPGRAGE 74 (114)
T ss_pred ccCeEEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCCC--CceEEEEEEEEEecCCCCCC
Confidence 3799999999999999999999999999999999999999999887765432 34689999999999999985
No 7
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.77 E-value=1.2e-18 Score=116.51 Aligned_cols=74 Identities=30% Similarity=0.537 Sum_probs=68.4
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCC-CCeeeeEEEEEEeecCCCCCC
Q 033793 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGA-PSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 38 ~~gl~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~-~~~~vT~~l~i~fl~p~~~Gd 111 (111)
.+|++++.+++|++++++++.+++.|+.|++|||++++++|.++++|++.... ....+|+++++||+||++.|+
T Consensus 23 ~lg~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~ 97 (141)
T COG2050 23 TLGIEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGD 97 (141)
T ss_pred hcCcEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCe
Confidence 47999999999999999999999999999999999999999999999998763 345699999999999999985
No 8
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.77 E-value=3.1e-18 Score=110.82 Aligned_cols=73 Identities=30% Similarity=0.400 Sum_probs=66.2
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEEeecCCCCC
Q 033793 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGG 110 (111)
Q Consensus 38 ~~gl~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~-~~~~~vT~~l~i~fl~p~~~G 110 (111)
++|+++.+++++++++++++.|+++|+.|++|||++++++|.++++++.... .+...+|++++|+|+||++.|
T Consensus 5 ~lg~~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g 78 (117)
T TIGR00369 5 FLGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG 78 (117)
T ss_pred ccCeEEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC
Confidence 4799999999999999999999999999999999999999999988766543 456789999999999999886
No 9
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=99.68 E-value=3.7e-16 Score=104.38 Aligned_cols=72 Identities=24% Similarity=0.333 Sum_probs=61.8
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHH----hCCCCeeeeEEEEEEeecCCCCC
Q 033793 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFT----VGAPSVGVSVEINVSYLDAAFGG 110 (111)
Q Consensus 38 ~~gl~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~----~~~~~~~vT~~l~i~fl~p~~~G 110 (111)
.+|+++.+++++++++++++.++ .|+.|++|||++++|+|.+++.++.. ...+...+|++++|+|++|++.+
T Consensus 11 ~lGi~v~e~~~g~~~v~~pl~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~~~ 86 (138)
T TIGR02447 11 AMGIAVSSYTGGELRLSAPLAAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVTGD 86 (138)
T ss_pred HcCCEEEEeeCCEEEEEeECCCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcCCC
Confidence 47999999999999999999996 89999999999999999887765532 12335689999999999999864
No 10
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.52 E-value=1.2e-13 Score=87.62 Aligned_cols=71 Identities=44% Similarity=0.688 Sum_probs=65.0
Q ss_pred cCeEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEEeecCCCC
Q 033793 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFG 109 (111)
Q Consensus 39 ~gl~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~-~~~~~vT~~l~i~fl~p~~~ 109 (111)
+++++.+.+++.+++++++.+.++|..|.+|||++++++|.+++..+.... ++...++.+++++|++|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~ 73 (113)
T cd03443 2 LGIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG 73 (113)
T ss_pred CcEEEEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC
Confidence 588899999999999999999999999999999999999999998887765 34577999999999999986
No 11
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=99.52 E-value=1.2e-13 Score=91.60 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=56.9
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEEeecCCCC
Q 033793 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFG 109 (111)
Q Consensus 38 ~~gl~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~-~~~~~vT~~l~i~fl~p~~~ 109 (111)
..|++++++++++++++++.++...|+.|++|||++++++|.++++.+.... .+...+..+++++|++|++.
T Consensus 18 ~~g~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~g 90 (132)
T PF14539_consen 18 TAGIRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPARG 90 (132)
T ss_dssp CCT-EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S---S
T ss_pred cceeEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEeccCC
Confidence 4799999999999999999999999999999999999999999998877765 44556789999999999875
No 12
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.37 E-value=2.7e-12 Score=85.36 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=57.7
Q ss_pred ecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEEeecCCCCCC
Q 033793 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGD 111 (111)
Q Consensus 46 ~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l-~i~fl~p~~~Gd 111 (111)
+.++.+.+...+.|++.|+.|++|||.+++++|.++++++..... ..++|+.+ .++|++|++.||
T Consensus 7 ~~~~~~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~~-~~~vtv~vd~i~F~~Pv~~Gd 72 (133)
T PRK10694 7 VPQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAH-GRVVTVRVEGMTFLRPVAVGD 72 (133)
T ss_pred CCCCceEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHcC-CceEEEEECceEECCCcccCc
Confidence 356778889999999999999999999999999999999887664 46799999 689999999997
No 13
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.23 E-value=6.2e-11 Score=75.99 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=55.9
Q ss_pred ecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEEeecCCCCCC
Q 033793 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGD 111 (111)
Q Consensus 46 ~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l-~i~fl~p~~~Gd 111 (111)
.+++.+++++++++.++|+.|.+|||++++++|.+++.++..... ...+++.+ +++|++|++.||
T Consensus 3 ~~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~~-~~~~~~~~~~~~f~~p~~~gd 68 (123)
T cd03442 3 MEDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAG-GRVVTASVDRIDFLKPVRVGD 68 (123)
T ss_pred CCccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHhC-CcEEEEEECceEEcCccccCc
Confidence 467889999999999999999999999999999999887765542 24567777 799999999986
No 14
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=99.22 E-value=6e-11 Score=80.78 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=57.4
Q ss_pred cCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEEeecCCCCCC
Q 033793 47 EPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGD 111 (111)
Q Consensus 47 ~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l-~i~fl~p~~~Gd 111 (111)
.++...++.-+-|...|++|.+|||.+++++|.++++++.....+ .+||+.+ .|+|++|++.||
T Consensus 10 ~~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~~-~vVTasvd~v~F~~Pv~vGd 74 (157)
T COG1607 10 PEGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGG-RVVTASVDSVDFKKPVRVGD 74 (157)
T ss_pred CCceeEEEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHhCC-eEEEEEeceEEEccccccCc
Confidence 466777888999999999999999999999999999999988754 7888887 599999999997
No 15
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=3.3e-10 Score=80.84 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=60.5
Q ss_pred EecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCC
Q 033793 45 LSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG 110 (111)
Q Consensus 45 ~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~G 110 (111)
..+.++.++-+...++++++.|.+|||+|+|++|.+.+++++...+....+|.+++++|.+|++..
T Consensus 121 d~s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~pnk~~vTanLsisy~~pip~~ 186 (237)
T KOG4781|consen 121 DPSHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALPNKIGVTANLSISYKRPIPTN 186 (237)
T ss_pred ecCCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCCchhheeeecccccCCCcccc
Confidence 446788999999999999999999999999999999999999888777899999999999999753
No 16
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=99.02 E-value=1.1e-09 Score=65.13 Aligned_cols=47 Identities=32% Similarity=0.485 Sum_probs=41.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCC-CeeeeEEEEEEeecCCCCCC
Q 033793 65 GNFMHGGATATLVDLVGSAAIFTVGAP-SVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 65 ~G~lHGG~i~tl~D~a~~~a~~~~~~~-~~~vT~~l~i~fl~p~~~Gd 111 (111)
+|++|||.+++|+|.++..++.....+ ...++++++++|++|++.||
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd 48 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGD 48 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTS
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCe
Confidence 589999999999999999999988754 67899999999999999986
No 17
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=98.85 E-value=4.3e-08 Score=66.05 Aligned_cols=86 Identities=21% Similarity=0.276 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCCCCCCccccccccCChhhhhhhhhcCeEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHH
Q 033793 4 ESVKRYLEKGGGGDDDKNKSTMEEMPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSA 83 (111)
Q Consensus 4 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~ 83 (111)
+++|+||.+.. +-.-.+|+++...++++++++.|..+. .|..|++.||.+++++=.++..
T Consensus 2 ~~Lq~~lh~~I-------------------Pls~~Mgi~v~~~~~~~l~~~APL~pN-~N~~~T~FgGSl~slatLaGW~ 61 (144)
T PF09500_consen 2 QELQQFLHEHI-------------------PLSKAMGIKVTSYTGQRLELSAPLAPN-INHHGTMFGGSLYSLATLAGWG 61 (144)
T ss_dssp HHHHHHHHHH--------------------HHHHHTT-EEEEEETTEEEEE--SGGG-B-TTSSB-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC-------------------ChhhhcCcEEEEEcCCEEEEeccCCCC-cCCCCCcchHHHHHHHHHHHHH
Confidence 46788888777 222258999999999999999999995 8999999999999999888887
Q ss_pred HHHHhC----CCCeeeeEEEEEEeecCCCC
Q 033793 84 AIFTVG----APSVGVSVEINVSYLDAAFG 109 (111)
Q Consensus 84 a~~~~~----~~~~~vT~~l~i~fl~p~~~ 109 (111)
.+.... .....|-.+.+|+|++|+..
T Consensus 62 lv~l~l~e~~~~~~IVi~~~~i~Y~~Pv~~ 91 (144)
T PF09500_consen 62 LVWLQLKEAGLNGDIVIADSNIRYLKPVTG 91 (144)
T ss_dssp HHHHHHHHHT---EEEEEEEEEEE-S---S
T ss_pred HHHHHHHHhCCCCcEEEEeCceEEcCCCCC
Confidence 666443 22467888999999999864
No 18
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=98.85 E-value=2.5e-08 Score=69.63 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=54.7
Q ss_pred EEEEecCC-EEEEEEEcCCCcc-CCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCCC
Q 033793 42 RVDLSEPG-RVICSMKVPPRLL-NAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 42 ~~~~~~~g-~~~~~~~~~~~~~-n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
++.++++| .++..+.++.++. |..+++|||++++++|.++..+ . .+..+++...+++|++|+.+||
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~~~---~-~~~~~~~~i~~irF~kPV~pGD 143 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAVAV---I-DAELALTGVANIRFKRPVKLGE 143 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHHHh---c-CCcEEEEEeeeEEEccCCCCCC
Confidence 56778888 6899999999988 9999999999999999864332 1 3345678888999999999997
No 19
>PLN02647 acyl-CoA thioesterase
Probab=98.81 E-value=2e-08 Score=78.16 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=56.9
Q ss_pred ecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEEeecCCCCCC
Q 033793 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGD 111 (111)
Q Consensus 46 ~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l-~i~fl~p~~~Gd 111 (111)
+.+-++.....+.|.+.|.+|.+|||.++.++|.+++++|..+.. ..++|+.+ .++|++|+++||
T Consensus 286 m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a~-~~~vt~svd~v~F~~PV~vGd 351 (437)
T PLN02647 286 IRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFAG-LRPYFLEVDHVDFLRPVDVGD 351 (437)
T ss_pred ccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHcC-CceEEEEecceEecCccccCc
Confidence 456678888889999999999999999999999999999988774 45778777 599999999997
No 20
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=98.65 E-value=9.2e-08 Score=59.16 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=40.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCCC
Q 033793 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 65 ~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
.+.+|||++++++|.+++.++....+....+|++++++|++|++.++
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~ 60 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADE 60 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCc
Confidence 79999999999999999988765443446799999999999998764
No 21
>PLN02647 acyl-CoA thioesterase
Probab=98.52 E-value=5.1e-07 Score=70.42 Aligned_cols=71 Identities=11% Similarity=-0.001 Sum_probs=57.8
Q ss_pred eEEEEecCCEEEEEEE------cCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCC-------CeeeeEEE-EEEeecC
Q 033793 41 LRVDLSEPGRVICSMK------VPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAP-------SVGVSVEI-NVSYLDA 106 (111)
Q Consensus 41 l~~~~~~~g~~~~~~~------~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~-------~~~vT~~l-~i~fl~p 106 (111)
+......+.++.+..+ +++.+.|+.|.+|||.++.++|.+++++|..+... ..+||+.+ +|+|++|
T Consensus 78 L~~k~~~~S~~~~~~~~~~d~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~P 157 (437)
T PLN02647 78 LLTKTPSQSRTSILYKFSSDFILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKP 157 (437)
T ss_pred ccccccccceEEEEEecCCchhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCC
Confidence 4444566778888885 45555999999999999999999999999988743 15788887 5999999
Q ss_pred CCCCC
Q 033793 107 AFGGD 111 (111)
Q Consensus 107 ~~~Gd 111 (111)
++.|+
T Consensus 158 i~~g~ 162 (437)
T PLN02647 158 IRVDV 162 (437)
T ss_pred CcCCc
Confidence 99986
No 22
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=98.24 E-value=5e-06 Score=51.06 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=50.3
Q ss_pred EEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhC--------CCCeeeeEEEEEEeecCCCCCC
Q 033793 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 53 ~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~--------~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
.++++.+.++|..|.+|+|.+++++|.+....+...+ .+...++.+.+++|++|++.||
T Consensus 3 ~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 69 (110)
T cd00586 3 LEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGD 69 (110)
T ss_pred EEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCC
Confidence 4678899999999999999999999999987776543 2345688999999999999986
No 23
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=98.00 E-value=5.7e-05 Score=43.59 Aligned_cols=59 Identities=27% Similarity=0.456 Sum_probs=49.5
Q ss_pred EEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEEeecCCCCCC
Q 033793 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 53 ~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~-~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
..+++.+...+..+.+|||.+..++|.+....+.... .....+..+++++|++|++.||
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 62 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGD 62 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCC
Confidence 4677888888899999999999999999988776643 2345688999999999999876
No 24
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=97.93 E-value=3.5e-05 Score=58.65 Aligned_cols=68 Identities=10% Similarity=0.021 Sum_probs=55.9
Q ss_pred EEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEEeecCCCCCC
Q 033793 43 VDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGD 111 (111)
Q Consensus 43 ~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l-~i~fl~p~~~Gd 111 (111)
.....+..+....-..|++.|.+|.+|||+++-+++..+...|..++.+.+ .+.++ .|+|.+|+..|.
T Consensus 192 ~~~m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~~~~p-~~rsVD~i~F~~pVdvG~ 260 (357)
T KOG2763|consen 192 MVWMKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFCKGRP-ATRSVDDIEFQKPVDVGC 260 (357)
T ss_pred ceEeeccceeEEEeecCcccCccCceehHHHHHHHHHHHHHHHHHHcCCCc-eEEEechhhccCcceeee
Confidence 344567778888889999999999999999999999999999998875433 44443 699999998874
No 25
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=97.06 E-value=0.0024 Score=40.83 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=47.1
Q ss_pred EEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhC---------CCCeeeeEEEEEEeecCCCCCC
Q 033793 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG---------APSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 53 ~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~---------~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
..++++...+++.|.+|.+.+..+++.+........+ .+...+.++.+++|++|++.||
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd 70 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDD 70 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCC
Confidence 4577888899999999999999999988765544332 1234578899999999999886
No 26
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=96.70 E-value=0.0064 Score=38.10 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=45.2
Q ss_pred EEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhC--------CCCeeeeEEEEEEeecCCCCCC
Q 033793 55 MKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 55 ~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~--------~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
++++...+++.|.+|-+.+..+++.+...-....+ .+...+.++.+++|++|++.||
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd 66 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDD 66 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCC
Confidence 46777889999999999999999999665443322 1334578899999999999986
No 27
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=96.34 E-value=0.033 Score=36.02 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=48.4
Q ss_pred EEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhC--------CCCeeeeEEEEEEeecCCCCCC
Q 033793 52 ICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 52 ~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~--------~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
..+.+++...++..|.+|=+.+..+++.+........+ .+...+.++.+++|++|++.||
T Consensus 4 ~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d 71 (130)
T PRK10800 4 RWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDD 71 (130)
T ss_pred EEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCC
Confidence 35677888899999999999999999998775544333 1345578899999999999886
No 28
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=95.89 E-value=0.048 Score=36.12 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=51.0
Q ss_pred EEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhC--------CCCeeeeEEEEEEeecCCCCCC
Q 033793 50 RVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 50 ~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~--------~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
.....++|+...+...|.+|=+....+++.+-.-.....+ .+...++++++++|++|++.||
T Consensus 5 ~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d 74 (137)
T COG0824 5 PFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGD 74 (137)
T ss_pred ceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCC
Confidence 3466788888899999999999999999999776655532 1245789999999999999987
No 29
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=95.66 E-value=0.028 Score=40.26 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=27.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCC
Q 033793 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG 110 (111)
Q Consensus 65 ~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~G 110 (111)
.+.+|||++++++=.++-... .+......+++++|++|+..|
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~----~~~~~~~~s~~~~fl~p~~~~ 50 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA----PPPGFDPHSLHVYFLRPVPPG 50 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH----TTTSSEEEEEEEEESS--BSC
T ss_pred CCcChhHHHHHHHHHHHHHhc----cCCCCceEEEEeEeccccccC
Confidence 678999988866654444332 122367899999999999876
No 30
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=95.11 E-value=0.065 Score=34.08 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=31.9
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCCC
Q 033793 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 64 ~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
..-++||..++++++.++.. ..++...+..+.+++|++|+..||
T Consensus 44 ~~~i~~g~~~~~~~~~~~~~----~~~g~~~~~~~~~~~f~~Pv~~gd 87 (128)
T cd03449 44 GGRIAHGMLTASLISAVLGT----LLPGPGTIYLSQSLRFLRPVFIGD 87 (128)
T ss_pred CCceecHHHHHHHHHHHHhc----cCCCceEEEEEEEEEECCCccCCC
Confidence 34689999999998765422 122334567788999999999986
No 31
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=94.95 E-value=0.073 Score=33.00 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=31.7
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCC
Q 033793 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG 110 (111)
Q Consensus 64 ~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~G 110 (111)
..+.+|||.+++++-.++...+ .. .....+++.+|++|+..+
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~---~~--~~~~~s~~~~Fl~p~~~~ 55 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTV---PD--DRVPHSLHSYFLRPGDPD 55 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhC---CC--CCCeEEEEEEecCCCCCC
Confidence 5789999999998877766443 21 235778999999999763
No 32
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=94.48 E-value=0.25 Score=31.14 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=35.8
Q ss_pred cCCCccCCCCcccHHHHHHHHHHHHHHHHHHhC-------CCCeeeeEEEEEEeecCCCCCC
Q 033793 57 VPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-------APSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 57 ~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~-------~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
|++..++ .|.+|-+.+..++|.+-.......+ .+...+.++.+++|++|++.||
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d 61 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGD 61 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTS
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCC
Confidence 3455688 9999999999999998664443221 2346789999999999999886
No 33
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.44 E-value=0.19 Score=39.95 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=50.3
Q ss_pred EEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhC-------CCCeeeeEEEEEEeecCCCCCC
Q 033793 50 RVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-------APSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 50 ~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~-------~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
..+.+++|++.+++..|.++=+.+..++|.+..-.....+ .+...+.++.+++|++|++.||
T Consensus 345 ~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD 413 (495)
T PRK07531 345 LRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQ 413 (495)
T ss_pred eEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCC
Confidence 4567999999999999999999999999988665444332 1234578999999999999886
No 34
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=93.76 E-value=0.12 Score=32.73 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=33.2
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCCC
Q 033793 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 64 ~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
..-++||..+++++..+..... ...........+++|.+|+..||
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~f~~Pv~~Gd 85 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQWL---PGTDGANLGSQSVRFLAPVFPGD 85 (127)
T ss_pred CCceechHHHHHHHHhhhhhhc---cCcccceeEEeEEEEeCCcCCCC
Confidence 4578999999999877654322 11124566788999999999997
No 35
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=90.77 E-value=1.1 Score=34.75 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=45.8
Q ss_pred EEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCC
Q 033793 55 MKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG 110 (111)
Q Consensus 55 ~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~G 110 (111)
+++.|.+.|..|++--|+++.++-.+.-......-. ...+-=++++-||+|++..
T Consensus 337 ~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~~-~niiIE~i~iyflk~vqid 391 (432)
T COG4109 337 VEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKKK-RNIIIENITIYFLKPVQID 391 (432)
T ss_pred EEechhhccccccchHHHHHHHHHHHHHHHHHHhcC-CceEEEeeeeeeecceecc
Confidence 889999999999999999999999988877665542 2456668899999998754
No 36
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=90.63 E-value=0.9 Score=29.01 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=28.8
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCCC
Q 033793 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 64 ~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
..-++||-.+++++-....- ............++++|++|+..||
T Consensus 49 ~~~ivhG~~~~a~~~~~~~~---~~~~~~~~~~~~~~~rF~~PV~~gd 93 (122)
T PF01575_consen 49 GGPIVHGMLTLALASGLLGD---WLGPNPPARLGRFNVRFRAPVFPGD 93 (122)
T ss_dssp SSSB-BHHHHHHHHHHHHHH---HHSTTECEEEEEEEEEESS--BTTE
T ss_pred CCEEEccHHHHHHHHHHHHH---hccCccceEEEEEEEEEeccccCCC
Confidence 35679999998887543332 2332224577889999999999986
No 37
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=87.65 E-value=5.2 Score=25.26 Aligned_cols=69 Identities=10% Similarity=-0.047 Sum_probs=43.1
Q ss_pred EEEec-CCEEEEEEEcCCCc--c-CCC---CcccHHHHHHHHHHHHHHHHHHhC---CCCeee-eEEEEEEeecCCCCCC
Q 033793 43 VDLSE-PGRVICSMKVPPRL--L-NAG---NFMHGGATATLVDLVGSAAIFTVG---APSVGV-SVEINVSYLDAAFGGD 111 (111)
Q Consensus 43 ~~~~~-~g~~~~~~~~~~~~--~-n~~---G~lHGG~i~tl~D~a~~~a~~~~~---~~~~~v-T~~l~i~fl~p~~~Gd 111 (111)
+..++ +++++....++++. . .++ ..++|=++.-++..+++....... .+...+ ..--++.|.+|+++||
T Consensus 13 i~~~~~~~~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd 92 (131)
T cd01288 13 VLELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGD 92 (131)
T ss_pred EEEEcCCCEEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCC
Confidence 44555 46777777776653 2 222 778887777777777665543321 222333 3335899999999986
No 38
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=87.16 E-value=6.4 Score=25.77 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=40.1
Q ss_pred EEEecC-CEEEEEEEcCCCcc--C----CCCcccHHHHHHHHHHHHHHHHHHhC--CCCeeeeEEE-EEEeecCCCCCC
Q 033793 43 VDLSEP-GRVICSMKVPPRLL--N----AGNFMHGGATATLVDLVGSAAIFTVG--APSVGVSVEI-NVSYLDAAFGGD 111 (111)
Q Consensus 43 ~~~~~~-g~~~~~~~~~~~~~--n----~~G~lHGG~i~tl~D~a~~~a~~~~~--~~~~~vT~~l-~i~fl~p~~~Gd 111 (111)
+.++++ ++++....+++++. . ...++||=++.-++-.++++.+.... .+...+...+ ++.|++|+++||
T Consensus 28 i~~~~~~~~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd 106 (147)
T PRK00006 28 VLELEPGKSIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGD 106 (147)
T ss_pred EEEEcCCCEEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCC
Confidence 444554 67888877766542 2 24567776665555555554332221 2223333333 799999999997
No 39
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=86.42 E-value=2 Score=27.35 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=28.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCCC
Q 033793 67 FMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 67 ~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
++||...++++..+..-. ... ...-.+++++|.+|+..||
T Consensus 45 ia~G~~~~~~~~~~~~~~---~~~--~~~~~~~~~rf~~pv~~Gd 84 (123)
T cd03455 45 YVNGPTLAGLVIRYVTDW---AGP--DARVKSFAFRLGAPLYAGD 84 (123)
T ss_pred EEEHHHHHHHHHHHHHHc---cCC--cceEEEEEEEeeccccCCC
Confidence 589999999987654321 121 2344567999999999987
No 40
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=85.07 E-value=3.3 Score=26.85 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=28.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCCC
Q 033793 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 66 G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
=++||-..++++-.+..- . ...+........+++|++|+..||
T Consensus 43 ~iahG~l~~~~~~~~~~~--~-~~~~~~~~~~~~~~rf~~PV~~gd 85 (126)
T cd03447 43 TITHGMYTSAAVRALVET--W-AADNDRSRVRSFTASFVGMVLPND 85 (126)
T ss_pred CeechhHHHHHHHHHHHH--h-ccCCCcceEEEEEEEEcccCcCCC
Confidence 458998888887554321 1 221223345667999999999987
No 41
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=84.01 E-value=3.4 Score=26.47 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=26.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCCC
Q 033793 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 66 G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
=++||-.+++++..+..- ..... . .-.+++++|++|+..||
T Consensus 45 ~i~~G~~~~~~~~~~~~~---~~~~~-~-~i~~~~~rf~~Pv~~Gd 85 (127)
T cd03453 45 VIAHGMLTMGLLGRLVTD---WVGDP-G-RVVSFGVRFTKPVPVPD 85 (127)
T ss_pred cEecHHHHHHHHHHHHHH---HcCCc-c-ceEEEEEEECCcCcCCC
Confidence 468998888888443322 12211 1 22577899999999997
No 42
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=83.02 E-value=4.5 Score=26.09 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=28.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCCC
Q 033793 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 65 ~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
.=++||-..++++..+..- ...++....-..++++|.+|+..||
T Consensus 44 ~~iahG~~t~a~~~~~~~~---~~~~~~~~~~~~~~~rF~~PV~~gD 87 (122)
T cd03448 44 RPILHGLCTYGFAARAVLE---AFADGDPARFKAIKVRFSSPVFPGE 87 (122)
T ss_pred CceehhHHHHHHHHHHHHH---HhcCCCcceeEEEEEEEcCCccCCC
Confidence 3468998888877654321 1222222344566999999999986
No 43
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=79.47 E-value=3.3 Score=29.92 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=27.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCC
Q 033793 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG 110 (111)
Q Consensus 66 G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~G 110 (111)
+.++||.+++.+=.|+... ..+ ...-.++.++|++|+..+
T Consensus 21 ~~~fGG~~~Aqal~Aa~~t---v~~--~~~~~S~h~~Fl~~~~~~ 60 (271)
T TIGR00189 21 NRVFGGQVVGQALAAASKT---VPE--EFIPHSLHSYFVRAGDPK 60 (271)
T ss_pred CceEccHHHHHHHHHHHhc---CCC--CCCcceeEEEecCCCCCC
Confidence 6899999998864444333 222 234457999999998764
No 44
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=74.77 E-value=3.8 Score=27.45 Aligned_cols=44 Identities=14% Similarity=-0.049 Sum_probs=26.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCCe--eeeEEEEEEeecCCCCCC
Q 033793 66 NFMHGGATATLVDLVGSAAIFTVGAPSV--GVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 66 G~lHGG~i~tl~D~a~~~a~~~~~~~~~--~vT~~l~i~fl~p~~~Gd 111 (111)
-++||-..++++..+..-... .++.. ..-...+++|++|+..||
T Consensus 57 ~Ia~G~~t~sl~~~l~~~~~~--~~~~~~~~~~g~~~~rF~~PV~~GD 102 (149)
T cd03450 57 TIAHGFLTLSLLPALTPQLFR--VEGVKMGVNYGLDKVRFPAPVPVGS 102 (149)
T ss_pred eEECHHHHHHHHHHHHHhccc--CCCceEEEEeeccEEEeCcceeCCc
Confidence 368898888877665432211 11111 112234899999999997
No 45
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=74.56 E-value=2.9 Score=26.96 Aligned_cols=43 Identities=21% Similarity=0.133 Sum_probs=24.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCC-CCe-eeeEEEEEEeecCCCCCC
Q 033793 66 NFMHGGATATLVDLVGSAAIFTVGA-PSV-GVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 66 G~lHGG~i~tl~D~a~~~a~~~~~~-~~~-~vT~~l~i~fl~p~~~Gd 111 (111)
-++||..+++++..+.. ..... ... .....-+++|++|+..||
T Consensus 51 ~ia~G~~~~a~~~~~~~---~~~~~~~~~~~~~g~~~~~f~~pv~~GD 95 (140)
T cd03446 51 RIAHGLLTLSIATGLLQ---RLGVFERTVVAFYGIDNLRFLNPVFIGD 95 (140)
T ss_pred ceeccccHHHHHhhHhh---hcccccceeeEEeccceEEEcCCCCCCC
Confidence 36888888776643321 11111 111 111223899999999997
No 46
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=73.84 E-value=19 Score=22.49 Aligned_cols=70 Identities=21% Similarity=0.208 Sum_probs=41.1
Q ss_pred EEEEecC-CEEEEEEEcCCCccC---CC---CcccHHHHHHHHHHHHHHHHHHhCC-----CC-eeeeEEEEEEeecCCC
Q 033793 42 RVDLSEP-GRVICSMKVPPRLLN---AG---NFMHGGATATLVDLVGSAAIFTVGA-----PS-VGVSVEINVSYLDAAF 108 (111)
Q Consensus 42 ~~~~~~~-g~~~~~~~~~~~~~n---~~---G~lHGG~i~tl~D~a~~~a~~~~~~-----~~-~~vT~~l~i~fl~p~~ 108 (111)
++..+++ ++++++..+++++-- ++ +.+-|=++.-++=.+++..+..... .. .....--++.|.+|+.
T Consensus 11 ~i~~~~~~~~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~ 90 (131)
T cd00493 11 RVLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVL 90 (131)
T ss_pred EEEEEcCCCEEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcC
Confidence 3556676 788888888876532 22 5566655554444444433332211 12 2233334899999999
Q ss_pred CCC
Q 033793 109 GGD 111 (111)
Q Consensus 109 ~Gd 111 (111)
+||
T Consensus 91 pgd 93 (131)
T cd00493 91 PGD 93 (131)
T ss_pred CCC
Confidence 886
No 47
>PLN02868 acyl-CoA thioesterase family protein
Probab=73.54 E-value=7.5 Score=30.16 Aligned_cols=62 Identities=15% Similarity=-0.027 Sum_probs=35.8
Q ss_pred CeEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCC
Q 033793 40 GLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFG 109 (111)
Q Consensus 40 gl~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~ 109 (111)
-++++.++++.-+.... +.. ...+.++||.+++.+=.|+. .+..++ ..-.++++.|++|+..
T Consensus 135 ~~~l~~~~~~~f~~~~~--~~~-~~~~~~fGG~~~aqal~Aa~---~~~~~~--~~~~s~~~~Fl~~~~~ 196 (413)
T PLN02868 135 ILHLEPLEVDIFRGITL--PDA-PTFGKVFGGQLVGQALAAAS---KTVDPL--KLVHSLHAYFLLVGDI 196 (413)
T ss_pred hcCcEeccCCeEECCcC--CCC-cccccccchHHHHHHHHHHH---ccCCCC--CCceEeeeeecCCCCC
Confidence 34455666665443332 222 23578999999997433332 222222 3456788999988764
No 48
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=73.17 E-value=4 Score=26.48 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=23.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEE-EEEEeecCCCCCC
Q 033793 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVE-INVSYLDAAFGGD 111 (111)
Q Consensus 65 ~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~-l~i~fl~p~~~Gd 111 (111)
.=++||..+++++-. ...... .+....... .+++|.+|+.+||
T Consensus 53 ~~ia~G~l~~~~~~~---~~~~~~-~~~~~~~~~~~~~~f~~pv~~GD 96 (146)
T cd03451 53 RRLVNSLFTLSLALG---LSVNDT-SLTAVANLGYDEVRFPAPVFHGD 96 (146)
T ss_pred CccccHHhHHHHHhh---heehhc-cccceeccCccEEEecCCCCCCC
Confidence 346888888776521 111111 111111122 3899999999997
No 49
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=69.39 E-value=13 Score=27.51 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=36.0
Q ss_pred eEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCC
Q 033793 41 LRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG 110 (111)
Q Consensus 41 l~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~G 110 (111)
++++.++++.-+..-. ......++||.+++.+=.|+... ..+ ...--++.+.|++|+..+
T Consensus 12 l~l~~~~~~~f~g~~~-----~~~~r~~fGGqv~AQal~AA~~t---v~~--~~~~hSlh~~Fl~pg~~~ 71 (286)
T PRK10526 12 LNLEKIEEGLFRGQSE-----DLGLRQVFGGQVVGQALYAAKET---VPE--ERLVHSFHSYFLRPGDSQ 71 (286)
T ss_pred cCcEEccCCeEECcCC-----CCCCCceechHHHHHHHHHHHhc---CCC--CCCceEEEEEcCCCCCCC
Confidence 3445566654333311 12356799999998764444333 222 235568899999999764
No 50
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=68.37 E-value=29 Score=22.34 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=36.6
Q ss_pred EEEec-CCEEEEEEEcCCCcc---CC---CCcccHHHHHHHHHHHHH-HHHHHhC----CCCeeeeEE-EEEEeecCCCC
Q 033793 43 VDLSE-PGRVICSMKVPPRLL---NA---GNFMHGGATATLVDLVGS-AAIFTVG----APSVGVSVE-INVSYLDAAFG 109 (111)
Q Consensus 43 ~~~~~-~g~~~~~~~~~~~~~---n~---~G~lHGG~i~tl~D~a~~-~a~~~~~----~~~~~vT~~-l~i~fl~p~~~ 109 (111)
+.+++ +++++.+..+++++- ++ ...+-|=++.=++-.+++ ++..... ......... -++.|.+|+++
T Consensus 21 i~~~~~~~~~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~p 100 (140)
T TIGR01750 21 ILELDPGKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVP 100 (140)
T ss_pred EEEEcCCCEEEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccCC
Confidence 45566 467888888877643 21 334545444333333333 2211111 112233334 38999999999
Q ss_pred CC
Q 033793 110 GD 111 (111)
Q Consensus 110 Gd 111 (111)
||
T Consensus 101 Gd 102 (140)
T TIGR01750 101 GD 102 (140)
T ss_pred CC
Confidence 86
No 51
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=67.32 E-value=13 Score=24.37 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=25.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCCeeee-EEEEEEeecCCCCCC
Q 033793 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVS-VEINVSYLDAAFGGD 111 (111)
Q Consensus 66 G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT-~~l~i~fl~p~~~Gd 111 (111)
=++||-.+++++..... ...++..... ..-+++|++|+.+||
T Consensus 51 ~ia~G~l~~s~~~~l~~----~~~~~~~~~~~g~~~~rf~~PV~~GD 93 (142)
T cd03452 51 RVAHGYFVLSAAAGLFV----DPAPGPVLANYGLENLRFLEPVYPGD 93 (142)
T ss_pred eeecHHHHHHHHhhhCc----cCCcccEEEEeccceEEECCCCCCCC
Confidence 36888888887765321 1112211111 123899999999997
No 52
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=67.26 E-value=16 Score=28.98 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=28.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCCC
Q 033793 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 66 G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
=++||-.+++++..+.+ . ..++...+-...+++|.+|+..||
T Consensus 59 ~IahG~l~~s~~~~l~~---~-~~~g~~~~~~~~~~rF~~PV~~GD 100 (466)
T PRK08190 59 VVAHGMWGGALISAVLG---T-RLPGPGTIYLGQSLRFRRPVRIGD 100 (466)
T ss_pred ceeCHHHHHHHHHHHHh---h-hCCCcceEEEEEEEEEeCCcCCCC
Confidence 46899888887643221 1 122223455678999999999997
No 53
>COG5496 Predicted thioesterase [General function prediction only]
Probab=64.22 E-value=40 Score=22.40 Aligned_cols=48 Identities=17% Similarity=0.024 Sum_probs=40.1
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEEeecCCCCCC
Q 033793 64 AGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 64 ~~G~lHGG~i~tl~D~a~~~a~~~~~-~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
....+--+++..+++.++.-.+.... .+...|..+.+++.+.|+++|.
T Consensus 27 ~~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~ 75 (130)
T COG5496 27 MLNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGL 75 (130)
T ss_pred ccceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCC
Confidence 44567788999999999998888776 4567788999999999999984
No 54
>PLN02864 enoyl-CoA hydratase
Probab=63.85 E-value=19 Score=27.04 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=26.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCCC
Q 033793 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 66 G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~Gd 111 (111)
=++||=..++++-.+.. ....++....-.+++++|.+|+.+||
T Consensus 228 ~IaHGm~t~g~~~~~~~---~~~~~~~~~~~~~~~~rF~~PV~pGd 270 (310)
T PLN02864 228 PILHGLCTLGFAVRAVI---KCFCNGDPTAVKTISGRFLLHVYPGE 270 (310)
T ss_pred ceeccHHHHHHHHHHHH---hhhcCCCCceEEEEEEEEcCCccCCC
Confidence 45898777666544321 11122222234568999999999987
No 55
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=63.02 E-value=18 Score=27.97 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=41.5
Q ss_pred cCCCccCCCCcccHH-HHHHHHHHHHHHHHHHhCC------C--CeeeeEEE-EEEeecCCCCC
Q 033793 57 VPPRLLNAGNFMHGG-ATATLVDLVGSAAIFTVGA------P--SVGVSVEI-NVSYLDAAFGG 110 (111)
Q Consensus 57 ~~~~~~n~~G~lHGG-~i~tl~D~a~~~a~~~~~~------~--~~~vT~~l-~i~fl~p~~~G 110 (111)
+.|.+.|..|..++| -+.-|+|++..+|.+.++. . ...||... .|+|.+|...|
T Consensus 15 ~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~ 78 (357)
T KOG2763|consen 15 VLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVG 78 (357)
T ss_pred CCCCccccccceecchHHHHHHHHhhhhhheeecccccccCccceEEEEeeEEEEEeecccccc
Confidence 666777899999999 7999999999888765541 1 34567666 59999987766
No 56
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=57.25 E-value=46 Score=27.40 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=20.1
Q ss_pred ecCCEEEEEEEcCCCccCCCCccc-HHHHHHHHHHHH
Q 033793 46 SEPGRVICSMKVPPRLLNAGNFMH-GGATATLVDLVG 81 (111)
Q Consensus 46 ~~~g~~~~~~~~~~~~~n~~G~lH-GG~i~tl~D~a~ 81 (111)
+++|.++.+|.+.| .|.+| |.+-++++....
T Consensus 97 ae~g~V~tRFaPsP-----tG~LHIGharaalln~~~ 128 (567)
T PRK04156 97 AEKGKVVMRFAPNP-----SGPLHLGHARAAILNDEY 128 (567)
T ss_pred CCCCeEEEEeCCCC-----CCCccHHHHHHHHHHHHH
Confidence 34778888877655 49999 455555554443
No 57
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=54.08 E-value=37 Score=22.35 Aligned_cols=41 Identities=24% Similarity=0.172 Sum_probs=26.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCCC
Q 033793 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG 110 (111)
Q Consensus 65 ~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~G 110 (111)
.=++||-..++++-.+..- . .. +...+ .+++++|.+|+..|
T Consensus 54 ~~iahG~~~~a~~~~~~~~--~-~~-~~~~~-~~~~~rF~~pv~~g 94 (142)
T PRK13693 54 TAIAHGMLTMGLGGGYVTS--W-VG-DPGAV-TEYNVRFTAVVPVP 94 (142)
T ss_pred CcEecHHHHHHHHHHHHHH--h-cC-CCcce-EEEEEEecccEECC
Confidence 4568999998887664322 1 12 11223 36799999999753
No 58
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=52.76 E-value=25 Score=22.55 Aligned_cols=42 Identities=17% Similarity=0.014 Sum_probs=22.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHhCCC-CeeeeE-EEEEEeecCCCCCC
Q 033793 67 FMHGGATATLVDLVGSAAIFTVGAP-SVGVSV-EINVSYLDAAFGGD 111 (111)
Q Consensus 67 ~lHGG~i~tl~D~a~~~a~~~~~~~-~~~vT~-~l~i~fl~p~~~Gd 111 (111)
++||-.+++++-.+ ........ ...... ..+++|.+|+.+||
T Consensus 50 ia~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~~pv~~Gd 93 (140)
T cd03454 50 AASGWHTAAITMRL---LVDAGLSGSASGGSPGIDELRWPRPVRPGD 93 (140)
T ss_pred eechHHHHHHHHHh---hhhhccccceEEEEcceeeeEeCCCCCCCC
Confidence 57877777764321 11111111 112222 24899999999997
No 59
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=48.66 E-value=7.7 Score=27.91 Aligned_cols=49 Identities=27% Similarity=0.383 Sum_probs=35.2
Q ss_pred EEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCC
Q 033793 54 SMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAA 107 (111)
Q Consensus 54 ~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~ 107 (111)
-+..+|...-..|+-|||.....|+.++.+ +....++++++.+.=+.|.
T Consensus 65 lw~~~P~lvIE~Gs~~GGSal~fA~~m~s~-----Gq~~kvl~vdIdi~~~~p~ 113 (237)
T COG3510 65 LWELQPSLVIEFGSRHGGSALFFANMMISI-----GQPFKVLGVDIDIKPLDPA 113 (237)
T ss_pred HHhcCCceeEeeccccCchhhhhhHhHHhc-----CCCceEEEEecccCcCChh
Confidence 455677777788999999999999844433 2335678888887766554
No 60
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=46.88 E-value=15 Score=19.57 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHcCCCCCCCccccccc
Q 033793 1 MELESVKRYLEKGGGGDDDKNKSTME 26 (111)
Q Consensus 1 ~~~e~~~~~l~~~~~~~~~~~~~~~~ 26 (111)
|+.|++++||++.. ..+..+..+.
T Consensus 1 MS~~~l~~Fl~~~~--~d~~l~~~l~ 24 (49)
T PF07862_consen 1 MSIESLKAFLEKVK--SDPELREQLK 24 (49)
T ss_pred CCHHHHHHHHHHHh--cCHHHHHHHH
Confidence 89999999999998 4334334333
No 61
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=46.42 E-value=69 Score=19.76 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=34.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCC-----CeeeeEEEEEEeecCCCC
Q 033793 65 GNFMHGGATATLVDLVGSAAIFTVGAP-----SVGVSVEINVSYLDAAFG 109 (111)
Q Consensus 65 ~G~lHGG~i~tl~D~a~~~a~~~~~~~-----~~~vT~~l~i~fl~p~~~ 109 (111)
.-.+|=.+++.+.|......+....+. ....|++-+|.|.+|...
T Consensus 14 d~~~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~ 63 (104)
T cd03444 14 DPRLHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRA 63 (104)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCC
Confidence 346889999999999987666554321 356899999999999765
No 62
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=42.17 E-value=19 Score=17.67 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHc
Q 033793 1 MELESVKRYLEK 12 (111)
Q Consensus 1 ~~~e~~~~~l~~ 12 (111)
++.|++++||+.
T Consensus 17 ls~eeir~FL~~ 28 (30)
T PF08671_consen 17 LSKEEIREFLEF 28 (30)
T ss_dssp --HHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 467899999975
No 63
>TIGR00541 hisDCase_pyru histidine decarboxylase, pyruvoyl type. This enzyme converts histadine to histamine in a single step by catalyzing the release of CO2. This type is synthesized as an inactive single chain precursor, then cleaved into two chains. The Ser at the new N-terminus at the cleavage site is converted to a pyruvoyl group essential for activity. This type of histidine decarboxylase appears is known so far only in some Gram-positive bacteria, where it may play a role in amino acid catabolism. There is also a pyridoxal phosphate type histidine decarboxylase, as found in human, where histamine is a biologically active amine.
Probab=40.82 E-value=3.7 Score=30.63 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=50.0
Q ss_pred CHHHHHHHHHcCCCCCCCccccccccC--ChhhhhhhhhcCeEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHH
Q 033793 2 ELESVKRYLEKGGGGDDDKNKSTMEEM--PTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATAT 75 (111)
Q Consensus 2 ~~e~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~gl~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~t 75 (111)
.+|++++||+..++. -..|.+++- +...|++. ..|+..+.+.+|++-..+++.|-..=+...+.||.|.+
T Consensus 208 needl~~~L~~~rk~---va~Si~~CG~Dq~v~y~~~-~Ig~ay~~m~PGqIG~Ait~aPYvtla~nAvP~g~i~~ 279 (310)
T TIGR00541 208 NEDDLKEFLEDHRKA---MAKSIAECGQDAHASFERS-WIGFAYTIMEPGEIGNAITCAPYVSLAIDAIPGGSILT 279 (310)
T ss_pred CHHHHHHHHHHHHHH---HHHHHHHhcCCcCeeEEEE-EEEEEEEEccCccccceeeecccEEehhhccCCccccC
Confidence 367888999887721 222333322 23345654 47999999999999999999999888888888887654
No 64
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=40.74 E-value=97 Score=19.85 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=30.2
Q ss_pred EEEEEEcCCCcc------CCCCcccHHHHH-HHHHHHHHHHHHHhC---CC---C-eeeeEEEEEEeecCCCCCC
Q 033793 51 VICSMKVPPRLL------NAGNFMHGGATA-TLVDLVGSAAIFTVG---AP---S-VGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 51 ~~~~~~~~~~~~------n~~G~lHGG~i~-tl~D~a~~~a~~~~~---~~---~-~~vT~~l~i~fl~p~~~Gd 111 (111)
++.+..+++++- ....++-|=++. +++-.+..++..... .+ . .....--++.|++|+.+||
T Consensus 27 ~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~Pg~ 101 (138)
T PF07977_consen 27 IVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVKFRGPVYPGD 101 (138)
T ss_dssp EEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEEE-S-B-TTE
T ss_pred EEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEEECccEeCCC
Confidence 777777766543 234567776666 444555555544422 11 1 1233444899999999885
No 65
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=39.29 E-value=23 Score=20.06 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHcCC
Q 033793 1 MELESVKRYLEKGG 14 (111)
Q Consensus 1 ~~~e~~~~~l~~~~ 14 (111)
|+-|+++.|+..-.
T Consensus 37 ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 37 MSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHhc
Confidence 78899999998765
No 66
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=38.80 E-value=50 Score=22.12 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=11.6
Q ss_pred EEEEeecCCCCCC
Q 033793 99 INVSYLDAAFGGD 111 (111)
Q Consensus 99 l~i~fl~p~~~Gd 111 (111)
-+++|.+|+.+||
T Consensus 99 ~~vRF~~PV~~Gd 111 (159)
T COG2030 99 DEVRFVKPVFPGD 111 (159)
T ss_pred cceEecCCCCCCC
Confidence 3899999999997
No 67
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=37.87 E-value=2.2e+02 Score=23.00 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=39.3
Q ss_pred EEEecCCEEEEEEEcCCCc--cC----CCCcccHHHHHHHHHHHHHHHHHHh-C--CCCeeeeEEE-EEEeecCCCCCC
Q 033793 43 VDLSEPGRVICSMKVPPRL--LN----AGNFMHGGATATLVDLVGSAAIFTV-G--APSVGVSVEI-NVSYLDAAFGGD 111 (111)
Q Consensus 43 ~~~~~~g~~~~~~~~~~~~--~n----~~G~lHGG~i~tl~D~a~~~a~~~~-~--~~~~~vT~~l-~i~fl~p~~~Gd 111 (111)
+.++++++++....++.+. .. ....+||=++.=++=.++++.+... . .+....-..+ ++.|++|+.+||
T Consensus 342 Il~~e~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGD 420 (464)
T PRK13188 342 IIELGDTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGD 420 (464)
T ss_pred EeEEeCCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCC
Confidence 3445677788877776643 22 3566887665544333344333222 1 1222333343 899999999997
No 68
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=37.84 E-value=36 Score=22.96 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=14.5
Q ss_pred eeeEEEEEEeecCCCCCC
Q 033793 94 GVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 94 ~vT~~l~i~fl~p~~~Gd 111 (111)
.+-.+.+++|++|+.+||
T Consensus 84 ~~~~~q~~~f~~PV~~GD 101 (159)
T PRK13692 84 IVQVDQVLKFEKPIVAGD 101 (159)
T ss_pred eEeeeeEEEEeCCccCCC
Confidence 344556899999999997
No 69
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=36.67 E-value=23 Score=25.26 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=24.6
Q ss_pred EcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEee
Q 033793 56 KVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYL 104 (111)
Q Consensus 56 ~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl 104 (111)
.++|+..=..|+.|||.+.-++|....+ +....++++|+.++-.
T Consensus 30 ~~kPd~IIE~Gi~~GGSli~~A~ml~~~-----~~~~~VigiDIdir~~ 73 (206)
T PF04989_consen 30 ELKPDLIIETGIAHGGSLIFWASMLELL-----GGKGKVIGIDIDIRPH 73 (206)
T ss_dssp HH--SEEEEE--TTSHHHHHHHHHHHHT-----T---EEEEEES-GTT-
T ss_pred HhCCCeEEEEecCCCchHHHHHHHHHHh-----CCCceEEEEeCCcchh
Confidence 4455555567999999999998855443 2334678888755443
No 70
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=34.84 E-value=67 Score=24.30 Aligned_cols=64 Identities=16% Similarity=0.048 Sum_probs=39.5
Q ss_pred CeEEEEecCCEEEEEEEcCCCccCCCCcccHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCCCC
Q 033793 40 GLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFG 109 (111)
Q Consensus 40 gl~~~~~~~g~~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~~~a~~~~~~~~~~vT~~l~i~fl~p~~~ 109 (111)
-++++.++++.-+.+-..... .++.+.+.||.+++=+ .++|..+... ..+.-+|...|++.+..
T Consensus 13 ~l~l~~lD~n~f~~~~l~~g~-~~~~~~~fGG~i~sQa---LaAA~~TV~e--~f~p~SlH~YFI~~gd~ 76 (294)
T KOG3016|consen 13 FLNLERLDKNLYLTRHLPKGR-EIPSNHAYGGQIASQA---LAAASKTVEE--MFIPHSLHCYFILVGDP 76 (294)
T ss_pred hheeeecCCCceecccCCccc-cccCcccccceehHHH---HHHHHhcccc--ccccceeeeeeeecCCC
Confidence 456777788765555444333 3678889999988754 3333333332 45666778888876643
No 71
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=34.63 E-value=1.6e+02 Score=24.32 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=20.5
Q ss_pred cCCEEEEEEEcCCCccCCCCccc-HHHHHHHHHHHHH
Q 033793 47 EPGRVICSMKVPPRLLNAGNFMH-GGATATLVDLVGS 82 (111)
Q Consensus 47 ~~g~~~~~~~~~~~~~n~~G~lH-GG~i~tl~D~a~~ 82 (111)
+.+.++.||++.|. |.+| |.+-++++....+
T Consensus 90 ~~~~vvtRFaPsPt-----G~LHiGharaalln~~~A 121 (560)
T TIGR00463 90 KMGEVVMRFAPNPS-----GPLHIGHARAAILNQYFA 121 (560)
T ss_pred cCCeeEEEeCCCCC-----CCccHHHHHHHHHHHHHH
Confidence 45778888887765 9999 4455555544433
No 72
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=31.10 E-value=74 Score=21.47 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHcCC
Q 033793 1 MELESVKRYLEKGG 14 (111)
Q Consensus 1 ~~~e~~~~~l~~~~ 14 (111)
|++++++++++..+
T Consensus 1 Md~~~Ik~Li~~~~ 14 (156)
T TIGR00531 1 MNIREIKELIKLIE 14 (156)
T ss_pred CCHHHHHHHHHHHH
Confidence 89999999999888
No 73
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=30.27 E-value=70 Score=25.04 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHcCCCCCCCccccccccCChhhhhhhhhcCeEEEEecCCEEEE-EEEcCCCccCCCCcccHHH
Q 033793 1 MELESVKRYLEKGGGGDDDKNKSTMEEMPTKFFERFIMQGLRVDLSEPGRVIC-SMKVPPRLLNAGNFMHGGA 72 (111)
Q Consensus 1 ~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~g~~~~-~~~~~~~~~n~~G~lHGG~ 72 (111)
|.+|+.+++++.-. +. |+|+..-...|..+ .-+.+-..++..|+. .+.-.-...+..|.+|-=.
T Consensus 276 ~~~EE~~~~~~~~~--~~----s~L~~iI~~~~~~L--~li~fFt~G~~eV~~WtIr~gt~ap~aagvihsdf 340 (391)
T KOG1491|consen 276 LYEEEAVKELEDLG--DS----SALPKIIKTGYSAL--NLIVFFTCGEDEVRAWTIRKGTKAPQAAGVIHSDF 340 (391)
T ss_pred cCHHHHHHHHHhcc--cc----cchhHHHHHHHHhh--CceEEEeeCCchheeeehhhccccccccceeeehh
Confidence 56788888888776 32 55655555555553 344455566766665 5555556667888888543
No 74
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=28.42 E-value=43 Score=18.69 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHc
Q 033793 1 MELESVKRYLEK 12 (111)
Q Consensus 1 ~~~e~~~~~l~~ 12 (111)
|+.|++|++|-.
T Consensus 22 ls~Eqaq~~Lve 33 (53)
T PF04485_consen 22 LSREQAQELLVE 33 (53)
T ss_dssp S-HHHHHHHHHH
T ss_pred hCHHHHHHHHHH
Confidence 678899888754
No 75
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=28.30 E-value=1e+02 Score=20.70 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHcCC
Q 033793 1 MELESVKRYLEKGG 14 (111)
Q Consensus 1 ~~~e~~~~~l~~~~ 14 (111)
|++++++++++..+
T Consensus 1 Md~~~I~~Li~~~~ 14 (155)
T PRK06302 1 MDIRKIKKLIELVD 14 (155)
T ss_pred CCHHHHHHHHHHHH
Confidence 89999999988888
No 76
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=27.85 E-value=38 Score=16.27 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=8.3
Q ss_pred HHHHHHHHcCC
Q 033793 4 ESVKRYLEKGG 14 (111)
Q Consensus 4 e~~~~~l~~~~ 14 (111)
.++|+|||.-+
T Consensus 6 ~SLqRFLeKRK 16 (27)
T PF09425_consen 6 ASLQRFLEKRK 16 (27)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHHHH
Confidence 47899999776
No 77
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=26.48 E-value=96 Score=17.80 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=13.9
Q ss_pred CCCcccHHHHHHHHHHHHH
Q 033793 64 AGNFMHGGATATLVDLVGS 82 (111)
Q Consensus 64 ~~G~lHGG~i~tl~D~a~~ 82 (111)
.+|.+||-+||=++--+.+
T Consensus 35 T~GrihGSAIAI~lGLvLA 53 (60)
T PF03818_consen 35 TRGRIHGSAIAIVLGLVLA 53 (60)
T ss_pred hCCCcchHHHHHHHHHHHH
Confidence 3689999999877655544
No 78
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]
Probab=25.60 E-value=65 Score=19.55 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHcCCC
Q 033793 1 MELESVKRYLEKGGG 15 (111)
Q Consensus 1 ~~~e~~~~~l~~~~~ 15 (111)
||.|++|..|+...+
T Consensus 1 M~~e~Ik~ll~~~L~ 15 (80)
T COG5007 1 MDNEEIKSLLENALP 15 (80)
T ss_pred CCHHHHHHHHHhcCC
Confidence 899999999998883
No 79
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=25.06 E-value=71 Score=23.73 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHcCC
Q 033793 1 MELESVKRYLEKGG 14 (111)
Q Consensus 1 ~~~e~~~~~l~~~~ 14 (111)
|..+++++|+++.-
T Consensus 1 M~~~~i~~f~~ryf 14 (260)
T PF11079_consen 1 MQQQQIHQFLERYF 14 (260)
T ss_pred CCHHHHHHHHHHHH
Confidence 67788888887654
No 80
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=25.00 E-value=63 Score=21.94 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=13.5
Q ss_pred eeEEEEEEeecCCCCCC
Q 033793 95 VSVEINVSYLDAAFGGD 111 (111)
Q Consensus 95 vT~~l~i~fl~p~~~Gd 111 (111)
+-.+-+..|++|+..||
T Consensus 85 v~~~q~~~f~rPV~~GD 101 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGD 101 (166)
T ss_pred eeeeeEEEEeCCcCCCC
Confidence 33455888999999997
No 81
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=23.56 E-value=2.8e+02 Score=19.79 Aligned_cols=59 Identities=17% Similarity=0.087 Sum_probs=35.8
Q ss_pred EEEEEEcCCCccCCCCcccHHHHHHHHHHHH-HHHHHHhCC-C---CeeeeEEEEEEeecCCCCC
Q 033793 51 VICSMKVPPRLLNAGNFMHGGATATLVDLVG-SAAIFTVGA-P---SVGVSVEINVSYLDAAFGG 110 (111)
Q Consensus 51 ~~~~~~~~~~~~n~~G~lHGG~i~tl~D~a~-~~a~~~~~~-~---~~~vT~~l~i~fl~p~~~G 110 (111)
...-++.++.... .-.+|=-.++.++|... ..+...... . ....++|.+|.|.++.+.+
T Consensus 167 ~~~W~R~~~~l~~-d~~~~~~~la~~sD~~~l~~~l~~~~~~~~~~~~~aSldhtv~fh~~~~~~ 230 (271)
T TIGR00189 167 QYVWRRARGSLPD-DPRLHQCALAYLSDLTLLPTALNPHNKAGFDGSMAASLDHSIWFHRPFRAD 230 (271)
T ss_pred EEEEEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEeeeeeEEEeCCCCCC
Confidence 4444454444333 24557789999999843 233333321 1 3347999999999996554
No 82
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=20.58 E-value=3.5e+02 Score=19.90 Aligned_cols=46 Identities=11% Similarity=-0.066 Sum_probs=31.4
Q ss_pred CcccHHHHHHHHHHHH-HHHHHHhCC-----CCeeeeEEEEEEeecCCCCCC
Q 033793 66 NFMHGGATATLVDLVG-SAAIFTVGA-----PSVGVSVEINVSYLDAAFGGD 111 (111)
Q Consensus 66 G~lHGG~i~tl~D~a~-~~a~~~~~~-----~~~~vT~~l~i~fl~p~~~Gd 111 (111)
-.+|=-+++-+.|.-. ..++..+.. .....++|-+|.|.+|.+..|
T Consensus 192 ~~~~~~~lay~sD~~~l~~al~~~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~ 243 (286)
T PRK10526 192 LRVHQYLLGYASDLNFLPVALQPHGIGFLEPGMQIATIDHSMWFHRPFNLNE 243 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccCCcceEEeeeEeEEEeCCCCCCc
Confidence 4688889998888544 344444431 234578999999999987653
No 83
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=20.46 E-value=71 Score=19.93 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHcCC
Q 033793 1 MELESVKRYLEKGG 14 (111)
Q Consensus 1 ~~~e~~~~~l~~~~ 14 (111)
|+.+++.+||..-.
T Consensus 8 Mt~~EL~~WL~t~~ 21 (92)
T PF11338_consen 8 MTPAELEDWLRTDE 21 (92)
T ss_pred CCHHHHHHHHcCcc
Confidence 89999999998876
No 84
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.06 E-value=91 Score=15.63 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=11.2
Q ss_pred CHHHHHHHHHcCC
Q 033793 2 ELESVKRYLEKGG 14 (111)
Q Consensus 2 ~~e~~~~~l~~~~ 14 (111)
+.+++++||+...
T Consensus 5 s~~~L~~wL~~~g 17 (38)
T PF10281_consen 5 SDSDLKSWLKSHG 17 (38)
T ss_pred CHHHHHHHHHHcC
Confidence 5789999999877
No 85
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=20.06 E-value=1.2e+02 Score=23.00 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=12.6
Q ss_pred CCCCcccHHHHHHHHHHH
Q 033793 63 NAGNFMHGGATATLVDLV 80 (111)
Q Consensus 63 n~~G~lHGG~i~tl~D~a 80 (111)
.|.| |||+..+|.+.-
T Consensus 118 ~P~G--hGdiy~aL~~sG 133 (315)
T cd06424 118 KPHG--HGDVHTLLYNSG 133 (315)
T ss_pred CCCC--chHHHHHHHHCC
Confidence 4666 999999998664
No 86
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=20.00 E-value=1.2e+02 Score=25.39 Aligned_cols=41 Identities=17% Similarity=-0.001 Sum_probs=24.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCeee-eEEEEEEeecCCCCCC
Q 033793 67 FMHGGATATLVDLVGSAAIFTVGAPSVGV-SVEINVSYLDAAFGGD 111 (111)
Q Consensus 67 ~lHGG~i~tl~D~a~~~a~~~~~~~~~~v-T~~l~i~fl~p~~~Gd 111 (111)
++||-..++++..... . ...+.... ...-+++|++|+..||
T Consensus 575 Ia~G~l~~sl~~~l~~---~-~~~~~~~~~~g~~~~rF~~PV~~GD 616 (663)
T TIGR02278 575 VAHGYFVLSAAAGLFV---D-PAPGPVLANYGLENLRFLEPVGPGD 616 (663)
T ss_pred eeCHHHHHHHHHHHhh---c-cCccchhhhcccceEEEcCCCCCCC
Confidence 6888888888744321 1 11111111 1223899999999997
Done!