BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033797
         (111 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DHX|B Chain B, Eny2:ganp Complex
 pdb|4DHX|C Chain C, Eny2:ganp Complex
 pdb|4DHX|E Chain E, Eny2:ganp Complex
 pdb|4DHX|F Chain F, Eny2:ganp Complex
          Length = 101

 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 62/97 (63%)

Query: 14  VEDQEKEPTLQEIINIKMIESGXXXXXXXXXXXXXVECGWKDEMKALCRAYIKKKGTNNV 73
           V    K+  ++  IN K+IE+G             +ECGWKD++KA C+  IK+KG  +V
Sbjct: 3   VSKMNKDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHV 62

Query: 74  TVDDLVHVITPKGRASIPDSIKTELLLRIRAFLASAA 110
           TVDDLV  ITPKGRA +PDS+K ELL RIR FLA  A
Sbjct: 63  TVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHA 99


>pdb|3FWB|C Chain C, Sac3:sus1:cdc31 Complex
 pdb|3FWC|C Chain C, Sac3:sus1:cdc31 Complex
 pdb|3FWC|D Chain D, Sac3:sus1:cdc31 Complex
 pdb|3FWC|G Chain G, Sac3:sus1:cdc31 Complex
 pdb|3FWC|H Chain H, Sac3:sus1:cdc31 Complex
 pdb|3FWC|K Chain K, Sac3:sus1:cdc31 Complex
 pdb|3FWC|L Chain L, Sac3:sus1:cdc31 Complex
 pdb|3FWC|O Chain O, Sac3:sus1:cdc31 Complex
 pdb|3FWC|P Chain P, Sac3:sus1:cdc31 Complex
 pdb|3KIK|A Chain A, Sgf11:sus1 Complex
 pdb|3KIK|B Chain B, Sgf11:sus1 Complex
 pdb|3KIK|C Chain C, Sgf11:sus1 Complex
 pdb|3KIK|D Chain D, Sgf11:sus1 Complex
 pdb|3KJL|A Chain A, Sgf11:sus1 Complex
 pdb|3KJL|B Chain B, Sgf11:sus1 Complex
 pdb|3KJL|C Chain C, Sgf11:sus1 Complex
 pdb|3KJL|D Chain D, Sgf11:sus1 Complex
 pdb|3MHH|B Chain B, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
 pdb|3MHS|B Chain B, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
           Ubiquitin Aldehyde
 pdb|3M99|C Chain C, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
 pdb|4FIP|B Chain B, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
           Delta-Znf)SUS1SGF73 Dub Module
 pdb|4FIP|F Chain F, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
           Delta-Znf)SUS1SGF73 Dub Module
 pdb|4FJC|B Chain B, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
           DUB Module
 pdb|4FJC|F Chain F, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
           DUB Module
 pdb|4FK5|B Chain B, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
          Length = 96

 Score = 34.7 bits (78), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 31  MIESGXXXXXXXXXXXXXVECGWKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASI 90
           ++ESG             ++ GW D++K L ++ +    + N T   ++  + PK    +
Sbjct: 16  LVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFT--QILSTVEPKALEMV 73

Query: 91  PDSIKTELLLRIRAFL 106
            DS +  +L +IR FL
Sbjct: 74  SDSTRETVLKQIREFL 89


>pdb|3D5L|A Chain A, Crystal Structure Of Regulatory Protein Recx
 pdb|3D5L|B Chain B, Crystal Structure Of Regulatory Protein Recx
          Length = 221

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 59  ALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIR 103
            + R ++++KG     +DD +   TP+ +A +   +  +L  R R
Sbjct: 130 GIIRQHLRQKGIGESDIDDALTQFTPEVQAELAKKLALKLFRRYR 174


>pdb|3W01|A Chain A, Crystal Structure Of Pcrb Complexed With Peg From
          Staphylococcus Aureus Subsp. Aureus Mu3
 pdb|3W01|B Chain B, Crystal Structure Of Pcrb Complexed With Peg From
          Staphylococcus Aureus Subsp. Aureus Mu3
 pdb|3W02|A Chain A, Crystal Structure Of Pcrb Complexed With So4 From
          Staphylococcus Aureus Subsp. Aureus Mu3
 pdb|3W02|B Chain B, Crystal Structure Of Pcrb Complexed With So4 From
          Staphylococcus Aureus Subsp. Aureus Mu3
          Length = 235

 Score = 25.0 bits (53), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 55 DEMKALCRAY---IKKKGTNNVTVDDLVHVITPKGRASIP 91
          D++ A+C +    I   GT++VT D+++H+++   R  +P
Sbjct: 27 DDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSKIRRYPLP 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,732,220
Number of Sequences: 62578
Number of extensions: 77468
Number of successful extensions: 144
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 4
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)