Query 033797
Match_columns 111
No_of_seqs 101 out of 152
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 10:27:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dhx_B Enhancer of yellow 2 tr 100.0 1.3E-40 4.3E-45 231.3 12.1 95 15-109 4-98 (101)
2 3mhs_B Protein SUS1; multi-pro 100.0 2.6E-38 8.9E-43 217.9 12.0 87 20-108 5-91 (96)
3 3kxe_C Antitoxin protein PARD- 86.8 1 3.6E-05 29.6 4.5 66 20-87 11-81 (88)
4 4dhx_B Enhancer of yellow 2 tr 84.2 1.5 5E-05 29.6 4.4 34 19-52 25-58 (101)
5 3mhs_B Protein SUS1; multi-pro 82.6 2.3 7.8E-05 28.4 4.8 33 38-70 6-38 (96)
6 3dfg_A Xcrecx, regulatory prot 76.9 6.3 0.00021 27.7 5.9 35 24-58 34-68 (162)
7 1y9i_A Low temperature require 72.2 6.2 0.00021 29.2 5.0 50 56-108 9-58 (178)
8 1tlq_A Hypothetical protein YP 66.8 9.4 0.00032 28.6 5.0 51 55-108 9-59 (189)
9 3eyy_A Putative iron uptake re 66.2 8.7 0.0003 26.3 4.4 54 43-98 5-59 (145)
10 3onj_A T-snare VTI1; helix, HA 65.8 7 0.00024 25.6 3.7 34 74-107 45-79 (97)
11 4ets_A Ferric uptake regulatio 63.7 18 0.0006 25.3 5.7 61 37-98 13-76 (162)
12 4hyz_A Uncharacterized protein 63.5 14 0.0005 24.4 5.0 46 55-103 14-59 (114)
13 1rfz_A Hypothetical protein AP 63.5 7.7 0.00026 28.5 3.9 49 57-108 12-60 (168)
14 2qyw_A Vesicle transport throu 60.8 11 0.00037 24.9 4.0 49 55-108 45-93 (102)
15 3c1d_A Protein ORAA, regulator 60.5 31 0.0011 23.9 6.5 45 38-82 46-106 (159)
16 2k9m_A RNA polymerase sigma fa 60.3 7.7 0.00026 26.7 3.3 59 40-105 5-66 (130)
17 3eir_A Putative ATP/GTP bindin 60.0 17 0.00059 28.3 5.4 42 62-104 198-239 (281)
18 3d5l_A Regulatory protein RECX 56.7 18 0.00062 26.6 5.0 34 24-57 78-111 (221)
19 3ppb_A Putative TETR family tr 56.1 18 0.00061 23.5 4.4 27 55-81 12-38 (195)
20 1q1v_A DEK protein; winged-hel 55.7 33 0.0011 21.3 5.4 54 53-108 13-68 (70)
21 2k9l_A RNA polymerase sigma fa 55.6 12 0.00042 23.1 3.4 27 73-105 49-75 (76)
22 1sgm_A Putative HTH-type trans 54.6 20 0.00068 23.2 4.5 24 57-80 11-34 (191)
23 2lo0_A Uncharacterized protein 53.5 12 0.00043 24.0 3.1 31 37-67 43-73 (75)
24 3lhq_A Acrab operon repressor 53.4 21 0.00071 23.6 4.4 22 59-80 21-42 (220)
25 3e3v_A Regulatory protein RECX 53.0 5.1 0.00017 28.7 1.4 58 25-82 36-110 (177)
26 3f1b_A TETR-like transcription 53.0 20 0.0007 23.4 4.4 21 59-79 21-41 (203)
27 3he0_A Transcriptional regulat 53.0 22 0.00074 23.2 4.5 27 55-81 14-40 (196)
28 3qkx_A Uncharacterized HTH-typ 53.0 21 0.0007 23.1 4.3 26 56-81 12-37 (188)
29 3vpr_A Transcriptional regulat 52.9 21 0.00072 23.5 4.4 26 55-80 6-31 (190)
30 3qbm_A TETR transcriptional re 52.3 22 0.00076 23.2 4.4 27 55-81 10-36 (199)
31 1pb6_A Hypothetical transcript 51.9 21 0.00073 23.6 4.4 21 60-80 26-46 (212)
32 3dcf_A Transcriptional regulat 51.3 22 0.00075 23.6 4.3 27 37-63 33-60 (218)
33 3kz9_A SMCR; transcriptional r 51.2 22 0.00076 23.2 4.3 21 60-80 25-45 (206)
34 3b81_A Transcriptional regulat 50.9 24 0.00082 23.2 4.4 27 55-81 14-40 (203)
35 3him_A Probable transcriptiona 50.8 23 0.00078 23.3 4.3 27 37-63 18-45 (211)
36 1vcs_A Vesicle transport throu 50.6 11 0.00037 24.9 2.6 34 74-108 49-82 (102)
37 2eh3_A Transcriptional regulat 50.5 25 0.00084 23.0 4.4 29 54-82 4-32 (179)
38 3lwj_A Putative TETR-family tr 50.2 25 0.00086 23.1 4.5 28 55-82 15-42 (202)
39 3dew_A Transcriptional regulat 50.1 17 0.00058 23.8 3.5 24 57-80 13-36 (206)
40 2wzk_A Cullin-5, CUL-5; UBL co 50.1 13 0.00044 29.4 3.4 56 50-106 16-73 (391)
41 2rae_A Transcriptional regulat 49.7 25 0.00084 23.3 4.4 25 38-62 20-45 (207)
42 2fq4_A Transcriptional regulat 49.0 27 0.00091 23.2 4.5 24 38-61 15-39 (192)
43 3s5r_A Transcriptional regulat 48.8 25 0.00084 23.4 4.3 27 55-81 13-39 (216)
44 3col_A Putative transcription 48.6 18 0.00063 23.4 3.5 26 37-62 12-38 (196)
45 3bqz_B HTH-type transcriptiona 48.6 18 0.00063 23.6 3.6 27 55-81 5-31 (194)
46 2g7s_A Transcriptional regulat 48.5 19 0.00064 23.4 3.5 23 39-61 12-35 (194)
47 3ccy_A Putative TETR-family tr 47.9 27 0.00091 23.3 4.3 26 37-62 16-42 (203)
48 2l09_A ASR4154 protein; proto- 47.9 20 0.00069 22.2 3.3 28 54-81 21-48 (62)
49 3knw_A Putative transcriptiona 47.4 29 0.00099 22.9 4.4 26 56-81 18-43 (212)
50 3qqa_A CMER; alpha-helical, he 47.3 29 0.00099 23.0 4.4 27 37-63 21-48 (216)
51 2qtq_A Transcriptional regulat 47.2 29 0.00099 22.9 4.4 20 60-79 24-43 (213)
52 2kru_A Light-independent proto 47.1 21 0.00073 22.1 3.4 28 54-81 22-49 (63)
53 3vp5_A Transcriptional regulat 47.0 28 0.00095 23.3 4.3 26 56-81 16-41 (189)
54 2do1_A Nuclear protein HCC-1; 46.9 20 0.00068 21.5 3.1 37 70-108 10-46 (55)
55 2dbn_A Hypothetical protein YB 46.7 64 0.0022 27.0 7.2 43 67-109 95-153 (461)
56 2yve_A Transcriptional regulat 46.6 27 0.00092 23.2 4.2 26 55-80 7-32 (185)
57 3bni_A Putative TETR-family tr 46.2 30 0.001 23.8 4.5 26 37-62 45-71 (229)
58 2fe3_A Peroxide operon regulat 46.1 46 0.0016 22.4 5.4 53 45-98 10-63 (145)
59 3rd3_A Probable transcriptiona 45.9 32 0.0011 22.3 4.4 25 57-81 15-39 (197)
60 3on2_A Probable transcriptiona 45.8 20 0.0007 23.3 3.4 28 37-64 14-42 (199)
61 2fd5_A Transcriptional regulat 45.7 31 0.001 22.4 4.3 28 55-82 10-37 (180)
62 2qko_A Possible transcriptiona 45.6 30 0.001 23.3 4.3 49 37-89 30-86 (215)
63 2ras_A Transcriptional regulat 45.6 31 0.0011 23.0 4.4 24 57-80 16-39 (212)
64 3cwr_A Transcriptional regulat 45.5 22 0.00074 23.3 3.5 25 38-62 20-45 (208)
65 3vib_A MTRR; helix-turn-helix 45.4 32 0.0011 23.0 4.5 25 56-80 14-38 (210)
66 2f07_A YVDT; helix-turn-helix, 45.4 32 0.0011 23.0 4.5 25 56-80 14-38 (197)
67 2d6y_A Putative TETR family re 44.8 32 0.0011 23.1 4.4 28 54-81 10-37 (202)
68 3cjd_A Transcriptional regulat 44.8 22 0.00075 24.0 3.5 15 39-53 16-30 (198)
69 2krc_A DNA-directed RNA polyme 44.8 16 0.00056 24.3 2.8 44 58-104 16-59 (99)
70 2ibd_A Possible transcriptiona 44.5 32 0.0011 23.0 4.3 25 38-62 17-42 (204)
71 3on4_A Transcriptional regulat 44.4 24 0.0008 22.9 3.5 24 38-61 13-37 (191)
72 3bru_A Regulatory protein, TET 44.2 33 0.0011 22.9 4.3 27 37-63 32-59 (222)
73 3anp_C Transcriptional repress 44.2 35 0.0012 22.7 4.5 26 56-81 13-38 (204)
74 3kkc_A TETR family transcripti 44.2 20 0.00067 23.2 3.1 23 58-80 18-40 (177)
75 2hyt_A TETR-family transcripti 44.0 35 0.0012 22.7 4.5 21 59-79 19-39 (197)
76 3f0c_A TETR-molecule A, transc 43.7 35 0.0012 22.7 4.4 27 55-81 14-40 (216)
77 1zk8_A Transcriptional regulat 43.6 24 0.00083 22.9 3.5 27 37-63 10-37 (183)
78 2dg8_A Putative TETR-family tr 43.5 24 0.00082 23.4 3.5 16 38-53 12-27 (193)
79 2w53_A Repressor, SMet; antibi 43.3 36 0.0012 22.9 4.5 25 56-80 15-39 (219)
80 3dpj_A Transcription regulator 42.8 36 0.0012 22.2 4.4 27 55-81 11-37 (194)
81 1rkt_A Protein YFIR; transcrip 42.6 37 0.0013 22.7 4.4 28 55-82 15-42 (205)
82 2gen_A Probable transcriptiona 42.6 38 0.0013 22.6 4.5 27 55-81 10-36 (197)
83 2zcm_A Biofilm operon icaabcd 42.6 37 0.0013 22.3 4.4 25 56-80 11-35 (192)
84 3mvp_A TETR/ACRR transcription 42.3 26 0.00088 23.2 3.5 27 37-63 28-55 (217)
85 2dg7_A Putative transcriptiona 42.0 23 0.0008 23.3 3.3 25 37-61 9-34 (195)
86 2zb9_A Putative transcriptiona 41.8 26 0.00089 23.5 3.5 27 37-63 25-52 (214)
87 2xdn_A HTH-type transcriptiona 41.5 40 0.0014 22.5 4.4 16 38-53 14-29 (210)
88 3gzi_A Transcriptional regulat 41.4 35 0.0012 22.7 4.1 23 39-61 21-44 (218)
89 3crj_A Transcription regulator 41.0 41 0.0014 22.5 4.4 26 56-81 18-43 (199)
90 1ui5_A A-factor receptor homol 40.9 40 0.0014 22.9 4.5 25 56-80 13-37 (215)
91 3bhq_A Transcriptional regulat 40.9 41 0.0014 22.6 4.4 27 55-81 15-41 (211)
92 2iu5_A DHAS, YCEG, HTH-type dh 40.8 26 0.0009 23.2 3.4 27 37-63 15-42 (195)
93 2xig_A Ferric uptake regulatio 40.7 83 0.0028 21.3 7.5 54 44-98 14-68 (150)
94 4a64_A Cullin-4B, CUL4B, CUL-4 40.4 48 0.0016 25.6 5.3 54 52-107 13-66 (354)
95 3nrg_A TETR family transcripti 40.1 27 0.00094 23.1 3.4 27 37-63 15-42 (217)
96 2wui_A MEXZ, transcriptional r 40.1 41 0.0014 22.6 4.3 24 57-80 16-39 (210)
97 3egq_A TETR family transcripti 40.1 20 0.00069 23.1 2.7 26 56-81 8-33 (170)
98 3g7r_A Putative transcriptiona 40.1 42 0.0014 22.8 4.5 26 37-62 37-63 (221)
99 2lkw_A Membrane fusion protein 39.8 9.5 0.00032 19.7 0.7 14 2-15 4-17 (26)
100 2hku_A A putative transcriptio 39.5 43 0.0015 22.5 4.4 23 57-80 25-47 (215)
101 3rh2_A Hypothetical TETR-like 39.2 29 0.00098 23.2 3.4 25 56-80 7-31 (212)
102 2of7_A Putative TETR-family tr 39.2 42 0.0014 23.7 4.4 23 39-61 52-75 (260)
103 2kvu_A MKL/myocardin-like prot 39.1 29 0.00098 22.3 3.1 38 70-109 26-63 (75)
104 2oi8_A Putative regulatory pro 38.8 41 0.0014 23.2 4.3 26 57-82 21-46 (216)
105 2nx4_A Transcriptional regulat 38.6 48 0.0016 22.0 4.5 28 55-82 13-40 (194)
106 3c2b_A Transcriptional regulat 38.2 32 0.0011 23.0 3.5 27 37-63 17-44 (221)
107 4ap2_B Cullin-3, CUL-3; ubiqui 38.1 56 0.0019 25.9 5.5 55 51-107 32-86 (410)
108 2id3_A Putative transcriptiona 38.0 32 0.0011 23.6 3.5 27 37-63 42-69 (225)
109 3aqt_A Bacterial regulatory pr 37.5 30 0.001 24.2 3.4 27 37-63 48-75 (245)
110 2rnn_A E3 SUMO-protein ligase 37.5 37 0.0013 23.3 3.7 61 23-83 45-112 (114)
111 3jsj_A Putative TETR-family tr 37.5 50 0.0017 21.5 4.3 24 56-80 13-36 (190)
112 2o7t_A Transcriptional regulat 37.5 32 0.0011 22.8 3.4 27 37-63 10-37 (199)
113 3cdl_A Transcriptional regulat 37.1 49 0.0017 22.1 4.4 25 56-80 13-37 (203)
114 1vi0_A Transcriptional regulat 36.8 34 0.0012 23.1 3.5 26 37-62 10-36 (206)
115 2qib_A TETR-family transcripti 36.0 33 0.0011 23.6 3.4 27 37-63 15-42 (231)
116 3hta_A EBRA repressor; TETR fa 35.7 36 0.0012 23.2 3.5 26 37-62 30-56 (217)
117 3q0w_A HTH-type transcriptiona 35.6 34 0.0012 23.5 3.4 27 37-63 46-73 (236)
118 4hku_A LMO2814 protein, TETR t 35.5 36 0.0012 22.4 3.4 27 55-81 10-36 (178)
119 2lwd_A Probable ATP-dependent 35.5 83 0.0028 20.7 5.1 40 21-60 43-84 (100)
120 2i10_A Putative TETR transcrip 35.3 40 0.0014 22.6 3.7 27 55-81 14-40 (202)
121 3nnr_A Transcriptional regulat 34.9 38 0.0013 22.9 3.5 26 37-62 7-33 (228)
122 2q24_A Putative TETR family tr 34.8 54 0.0019 21.5 4.2 25 37-61 17-41 (194)
123 2lky_A Uncharacterized protein 34.6 33 0.0011 23.5 3.1 60 36-106 29-88 (112)
124 2kvc_A Putative uncharacterize 34.5 39 0.0013 22.8 3.4 61 36-107 27-87 (103)
125 4eoz_B Cullin-3, CUL-3; E3 ubi 34.4 47 0.0016 25.8 4.4 56 50-107 14-69 (364)
126 3v6g_A Probable transcriptiona 33.6 62 0.0021 22.1 4.5 27 55-81 17-43 (208)
127 2np5_A Transcriptional regulat 32.9 44 0.0015 22.4 3.5 24 57-80 14-37 (203)
128 3bjb_A Probable transcriptiona 32.9 39 0.0013 22.9 3.3 46 37-86 24-77 (207)
129 3pas_A TETR family transcripti 32.7 19 0.00067 23.3 1.6 27 37-63 10-37 (195)
130 1zrj_A E1B-55KDA-associated pr 32.6 24 0.00083 20.7 1.9 37 71-109 11-47 (50)
131 1f8p_A Neuropeptide Y (PNPY); 32.5 39 0.0013 18.9 2.6 25 7-31 4-28 (37)
132 2zcx_A SCO7815, TETR-family tr 32.5 63 0.0022 22.4 4.4 24 38-61 26-50 (231)
133 2hxo_A Putative TETR-family tr 32.4 61 0.0021 23.0 4.4 27 37-63 18-45 (237)
134 2fbq_A Probable transcriptiona 32.3 65 0.0022 22.2 4.4 25 56-80 11-35 (235)
135 3mnl_A KSTR, transcriptional r 32.0 19 0.00065 23.7 1.5 27 37-63 22-49 (203)
136 2hyj_A Putative TETR-family tr 31.7 47 0.0016 22.2 3.5 15 40-54 17-31 (200)
137 3ol3_A Putative uncharacterize 31.6 1.2E+02 0.0041 20.5 5.7 56 34-93 30-86 (107)
138 3c07_A Putative TETR-family tr 31.6 63 0.0022 23.3 4.4 27 37-63 43-70 (273)
139 1w85_A Pyruvate dehydrogenase 31.4 1.6E+02 0.0054 23.1 7.0 52 42-97 297-358 (368)
140 1mzb_A Ferric uptake regulatio 31.1 66 0.0022 21.3 4.2 53 46-98 7-60 (136)
141 2qwt_A Transcriptional regulat 31.0 66 0.0023 21.3 4.2 44 37-84 15-65 (196)
142 3bu8_A Telomeric repeat-bindin 30.7 1.2E+02 0.004 23.3 5.9 53 32-84 125-182 (235)
143 2rek_A Putative TETR-family tr 29.6 51 0.0017 21.7 3.4 45 37-85 18-69 (199)
144 3o60_A LIN0861 protein; PSI, M 29.4 52 0.0018 22.3 3.5 15 39-53 23-38 (185)
145 2guh_A Putative TETR-family tr 29.4 50 0.0017 22.6 3.4 26 37-62 41-67 (214)
146 3fiw_A Putative TETR-family tr 29.2 53 0.0018 22.8 3.5 46 35-84 25-78 (211)
147 2g7l_A TETR-family transcripti 29.2 68 0.0023 22.9 4.2 26 37-62 21-47 (243)
148 4aci_A HTH-type transcriptiona 29.1 23 0.00079 23.2 1.5 28 36-63 15-43 (191)
149 2iai_A Putative transcriptiona 29.0 31 0.0011 23.7 2.2 27 37-63 32-59 (230)
150 3eup_A Transcriptional regulat 28.7 25 0.00085 23.0 1.6 27 37-63 13-40 (204)
151 3bqy_A Putative TETR family tr 28.6 55 0.0019 22.7 3.5 27 55-81 5-31 (209)
152 2jj7_A Hemolysin II regulatory 28.4 25 0.00087 22.9 1.6 46 37-86 9-62 (186)
153 3geu_A Intercellular adhesion 28.4 24 0.00082 23.1 1.5 23 39-61 7-30 (189)
154 2y2z_A SIM16, SIMR, putative r 28.2 78 0.0027 23.1 4.5 27 37-63 29-56 (267)
155 3e7q_A Transcriptional regulat 28.0 26 0.00089 23.1 1.6 26 37-62 16-42 (215)
156 3h1s_A Superoxide dismutase; S 27.8 64 0.0022 23.7 3.9 33 19-54 91-126 (195)
157 1vdy_A Hypothetical protein (R 27.2 1.6E+02 0.0054 20.5 5.7 43 22-66 30-74 (140)
158 3ni7_A Bacterial regulatory pr 26.7 83 0.0028 21.6 4.2 26 37-62 9-35 (213)
159 3kkd_A Transcriptional regulat 26.5 64 0.0022 22.0 3.5 49 35-87 35-91 (237)
160 1jjr_A KU70, thyroid autoantig 26.5 43 0.0015 23.9 2.6 41 66-108 57-97 (151)
161 2gfn_A HTH-type transcriptiona 26.5 65 0.0022 21.7 3.5 27 55-81 12-38 (209)
162 1z0x_A Transcriptional regulat 26.4 60 0.002 22.5 3.4 26 37-62 7-34 (220)
163 3ljl_A Transcriptional regulat 26.0 28 0.00095 22.6 1.5 27 37-63 16-43 (156)
164 1t33_A Putative transcriptiona 25.8 66 0.0022 21.4 3.4 44 37-84 14-64 (224)
165 3qvn_A Manganese-containing su 25.7 50 0.0017 24.4 3.0 31 21-54 102-135 (206)
166 2l81_A Enhancer of filamentati 25.5 84 0.0029 23.1 4.1 68 19-96 90-157 (176)
167 2opt_A Actii protein; helical 25.3 66 0.0023 23.0 3.5 27 55-81 9-35 (234)
168 3nxc_A HTH-type protein SLMA; 25.3 54 0.0018 21.5 2.8 26 37-62 26-53 (212)
169 1zx4_A P1 PARB, plasmid partit 24.8 80 0.0027 23.1 3.9 38 70-107 81-124 (192)
170 2oer_A Probable transcriptiona 24.5 57 0.0019 22.0 2.9 25 38-62 27-52 (214)
171 4ffk_A Superoxide dismutase; o 24.0 86 0.0029 23.6 4.0 33 19-54 109-144 (223)
172 3g1o_A Transcriptional regulat 24.0 52 0.0018 22.9 2.7 27 37-63 45-72 (255)
173 2hxi_A Putative transcriptiona 23.5 63 0.0022 23.0 3.1 24 38-61 32-56 (241)
174 1b06_A Protein (superoxide dis 22.4 1E+02 0.0035 22.8 4.1 33 19-54 101-136 (210)
175 2pz9_A Putative regulatory pro 22.1 36 0.0012 23.2 1.5 29 35-63 30-59 (226)
176 1u9p_A PARC; unknown function; 22.0 2E+02 0.0068 19.8 6.2 32 74-105 73-104 (120)
177 2g3b_A Putative TETR-family tr 21.4 40 0.0014 22.8 1.6 26 37-62 5-31 (208)
178 3frq_A Repressor protein MPHR( 21.3 41 0.0014 22.1 1.6 27 37-63 10-37 (195)
179 3tqj_A Superoxide dismutase [F 21.2 95 0.0032 23.1 3.8 33 19-54 89-124 (210)
180 3lsj_A DEST; transcriptional r 20.8 47 0.0016 22.2 1.8 27 37-63 13-41 (220)
181 1ma1_A Superoxide dismutase; m 20.7 1.1E+02 0.0038 22.5 4.0 32 19-53 98-132 (205)
182 3lio_A Iron superoxide dismuta 20.6 89 0.003 22.8 3.4 33 19-54 88-123 (192)
183 3loc_A HTH-type transcriptiona 20.6 44 0.0015 21.9 1.6 25 38-62 21-46 (212)
184 1ljr_A HGST T2-2, glutathione 20.4 70 0.0024 22.4 2.8 21 85-105 223-243 (244)
185 2id6_A Transcriptional regulat 20.2 45 0.0015 22.2 1.6 27 36-62 6-33 (202)
No 1
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=231.35 Aligned_cols=95 Identities=58% Similarity=0.969 Sum_probs=88.7
Q ss_pred hhccchhhHHHHHHHHHHhcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHH
Q 033797 15 EDQEKEPTLQEIINIKMIESGEKEKLMELLRERLVECGWKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSI 94 (111)
Q Consensus 15 ~~~~~~~~lk~~I~~~LveSGe~erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~V 94 (111)
..|+.+++++++|+++|++||||++|+++|+.||+||||+|+||++||++|+++|++++||++|+++|+|+|+++||++|
T Consensus 4 ~~~~~e~~lka~I~~~LveSGe~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~V 83 (101)
T 4dhx_B 4 SKMNKDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSV 83 (101)
T ss_dssp -----CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSCHHH
T ss_pred ccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCCHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 033797 95 KTELLLRIRAFLASA 109 (111)
Q Consensus 95 K~Ell~~Ir~fL~~~ 109 (111)
|+||+++||+||++.
T Consensus 84 K~Ell~rIr~fL~~~ 98 (101)
T 4dhx_B 84 KKELLQRIRTFLAQH 98 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999874
No 2
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=100.00 E-value=2.6e-38 Score=217.92 Aligned_cols=87 Identities=26% Similarity=0.501 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHH
Q 033797 20 EPTLQEIINIKMIESGEKEKLMELLRERLVECGWKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELL 99 (111)
Q Consensus 20 ~~~lk~~I~~~LveSGe~erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell 99 (111)
...++++|+++|++||||++|+++|+.||+||||+|+||++||++|+++ +++||++|+++|+|+|+++||++||+||+
T Consensus 5 ~~~lk~~I~~~LveSGe~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~--~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell 82 (96)
T 3mhs_B 5 TAQLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNIN--ESTNFTQILSTVEPKALEMVSDSTRETVL 82 (96)
T ss_dssp CTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--TCCCHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhc--CCCCHHHHHHHHhHHHHHHCCHHHHHHHH
Confidence 4579999999999999999999999999999999999999999999988 79999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 033797 100 LRIRAFLAS 108 (111)
Q Consensus 100 ~~Ir~fL~~ 108 (111)
++||+||++
T Consensus 83 ~~Ir~fL~~ 91 (96)
T 3mhs_B 83 KQIREFLEE 91 (96)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999987
No 3
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=86.75 E-value=1 Score=29.56 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHhcchH----HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCC-CCCCHHHHHHhhchhhh
Q 033797 20 EPTLQEIINIKMIESGEK----EKLMELLRERLVECGWKDEMKALCRAYIKKKGT-NNVTVDDLVHVITPKGR 87 (111)
Q Consensus 20 ~~~lk~~I~~~LveSGe~----erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~-~~vt~~~L~~~I~P~Ar 87 (111)
.+.+.+-|.. +|+||.| |-|++.|+.--....|.+.++....+-+. .|. ..++++++++++.-+..
T Consensus 11 ~~~l~~~i~~-~V~sG~Y~s~SEviR~~lR~l~~re~~l~~Lr~~l~~G~~-Sg~~~~~d~d~v~a~~~~~~~ 81 (88)
T 3kxe_C 11 GDHFQAFIDS-QVADGRYGSASEVIRAGLRLLEENEAKLAALRAALIEGEE-SGFIEDFDFDAFIEERSRASA 81 (88)
T ss_dssp CHHHHHHHHH-HHTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEESSCCHHHHHHHHHHC--
T ss_pred CHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHh
Confidence 3455666655 5689999 44555554433333466777777766554 343 44899999999876544
No 4
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=84.18 E-value=1.5 Score=29.61 Aligned_cols=34 Identities=32% Similarity=0.496 Sum_probs=31.6
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHHhcC
Q 033797 19 KEPTLQEIINIKMIESGEKEKLMELLRERLVECG 52 (111)
Q Consensus 19 ~~~~lk~~I~~~LveSGe~erLk~lL~~rL~EcG 52 (111)
.-..|+..++++|+|+|=++.++++-++-+.+-|
T Consensus 25 e~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~g 58 (101)
T 4dhx_B 25 ERERLKELLRAKLIECGWKDQLKAHCKEVIKEKG 58 (101)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHcC
Confidence 4568999999999999999999999999999887
No 5
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=82.58 E-value=2.3 Score=28.37 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCC
Q 033797 38 EKLMELLRERLVECGWKDEMKALCRAYIKKKGT 70 (111)
Q Consensus 38 erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~ 70 (111)
..|+..++++|+++|=++.++++-+.-+.+.|-
T Consensus 6 ~~lk~~I~~~LveSGe~erL~~lL~~rL~EcGW 38 (96)
T 3mhs_B 6 AQLKSQIQQYLVESGNYELISNELKARLLQEGW 38 (96)
T ss_dssp THHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHCCc
Confidence 479999999999999999999999999999883
No 6
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=76.93 E-value=6.3 Score=27.73 Aligned_cols=35 Identities=26% Similarity=0.495 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhcChHHHHH
Q 033797 24 QEIINIKMIESGEKEKLMELLRERLVECGWKDEMK 58 (111)
Q Consensus 24 k~~I~~~LveSGe~erLk~lL~~rL~EcGW~DeVr 58 (111)
...|.++|..-|--+..-+.+-.+|.+.||.|+-+
T Consensus 34 ~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~r 68 (162)
T 3dfg_A 34 KKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVR 68 (162)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 34677788887876667777778899999998874
No 7
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=72.18 E-value=6.2 Score=29.23 Aligned_cols=50 Identities=14% Similarity=0.247 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHhh
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLAS 108 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~ 108 (111)
++.+.+.+.++++| ||++++++-+.-.=...+|+....+....++..|..
T Consensus 9 ~~~~~~~~~L~~rG---Vtl~diae~v~~Lq~~y~p~l~~e~~~e~v~~vL~K 58 (178)
T 1y9i_A 9 ALESKARSWLIERG---VEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRK 58 (178)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHHHTTTSTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHHHhcCccCCCcCHHHHHHHHHHHhCC
Confidence 46777889999998 899999988875555569987788888888877753
No 8
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=66.80 E-value=9.4 Score=28.58 Aligned_cols=51 Identities=16% Similarity=0.339 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLAS 108 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~ 108 (111)
.++.+.+.+.|.++| ||++++.+-+.--=...+|+-...+.+..+...|..
T Consensus 9 ~~~~~~~i~~L~eRG---Vtl~dIaeiv~~Lq~~Y~p~lt~e~c~e~v~~VL~K 59 (189)
T 1tlq_A 9 NEMVDITKDMLNKRG---VMIEDIARIVQKLQEKYNPNLPLSVCMENVEKVLNK 59 (189)
T ss_dssp HHHHHHHHHHHHHTT---CCHHHHHHHHHHHTTTTCTTCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHHHHHhcccCCCccHHHHHHHHHHHHcC
Confidence 457777888999997 899999998876666779998888888888887743
No 9
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=66.18 E-value=8.7 Score=26.28 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=41.1
Q ss_pred HHHHHHHhcChH-HHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 033797 43 LLRERLVECGWK-DEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTEL 98 (111)
Q Consensus 43 lL~~rL~EcGW~-DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~El 98 (111)
.+.+.|.+.|.+ ..-|...-++|.+.+ .+|.++|++.+..+.-.+=+..|++-|
T Consensus 5 ~~~~~L~~~g~r~T~qR~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L 59 (145)
T 3eyy_A 5 DWKSDLRQRGYRLTPQRQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTL 59 (145)
T ss_dssp THHHHHHTTTCCCCHHHHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHH
Confidence 356678888887 777888888888775 799999999998766555555666544
No 10
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=65.83 E-value=7 Score=25.61 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=29.8
Q ss_pred CHHHHHHhhchhhhccC-CHHHHHHHHHHHHHHHh
Q 033797 74 TVDDLVHVITPKGRASI-PDSIKTELLLRIRAFLA 107 (111)
Q Consensus 74 t~~~L~~~I~P~Ar~~V-P~~VK~Ell~~Ir~fL~ 107 (111)
-.++|+..+.=.++.++ |.+.|..+..+||+|=.
T Consensus 45 EA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~ 79 (97)
T 3onj_A 45 ELFDLLDQMDVEVNNSIGDASERATYKAKLREWKK 79 (97)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 45788889999999998 99999999999999854
No 11
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=63.70 E-value=18 Score=25.31 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHhCCCCCCHHHHHHhhchh--hhccCCHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRAYIKKKGTNNVTVDDLVHVITPK--GRASIPDSIKTEL 98 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~--Ar~~VP~~VK~El 98 (111)
.+.+.+.+.+.|.+.|.+ ..-|...-++|.+.+ ..+|.++|++.+..+ .-.+=+..|++-|
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR~~IL~~L~~~~-~h~sA~eI~~~l~~~~~~~~is~aTVYRtL 76 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQREVLLKTLYHSD-THYTPESLYMEIKQAEPDLNVGIATVYRTL 76 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHSCC-SCBCHHHHHHHHHHHCGGGCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCC-CCCCHHHHHHHHHhhcCCCCCCHHHHHHHH
Confidence 667777888888888875 455666777777665 689999999999877 5555556666544
No 12
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=63.51 E-value=14 Score=24.44 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHH
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIR 103 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir 103 (111)
+.|++.++++|.-- +.=+|+.+.+...|..+..+|.+.-+ +...+-
T Consensus 14 ~~v~~~A~~~I~~l--~~~dy~~i~~~~~~~lk~~Lt~e~l~-~~~~~~ 59 (114)
T 4hyz_A 14 ETVRKQAMEDIEIA--QSKDYESWKSRFTKDLQSSLTEESYD-SYLKIL 59 (114)
T ss_dssp HHHHHHHHHHHHHH--HTTCHHHHHTTBCHHHHTTCCHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHH--HhCCHHHHHHHhCHHHHhhCCHHHHH-HHHHHH
Confidence 46899999999765 34699999999999999999999888 777644
No 13
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=63.50 E-value=7.7 Score=28.46 Aligned_cols=49 Identities=16% Similarity=0.348 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHhh
Q 033797 57 MKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLAS 108 (111)
Q Consensus 57 Vr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~ 108 (111)
+.+.+.+.++++| ||++++++-+.-.=...+|+-...+....+...|..
T Consensus 12 ~~~~~~~~L~~rG---Vtl~dia~~~~~Lq~~y~p~l~~e~~~e~v~~vL~K 60 (168)
T 1rfz_A 12 LEQTARRWLEERG---VTVEKIAELVYYLQSKYHPDLTMEECIENVNRVISK 60 (168)
T ss_dssp CHHHHHHHHHHTT---CCHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHhcCccCCCcCHHHHHHHHHHHHCC
Confidence 5566888899998 899999988876555569987788888888877754
No 14
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=60.75 E-value=11 Score=24.90 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLAS 108 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~ 108 (111)
++=+..++++=+ +. --.++|+..+.=.++.+ |.+.|..+..+||+|=.+
T Consensus 45 e~rk~~i~~ie~--~l--dEA~eLl~qMelE~r~~-p~s~R~~~~~klr~Yk~d 93 (102)
T 2qyw_A 45 EEKKKLVRDFDE--KQ--QEANETLAEMEEELRYA-PLTFRNPMMSKLRNYRKD 93 (102)
T ss_dssp HHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHH
Confidence 455555554422 11 34678888888889877 999999999999998543
No 15
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=60.47 E-value=31 Score=23.88 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcChHHHHH----------------HHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 38 EKLMELLRERLVECGWKDEMK----------------ALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 38 erLk~lL~~rL~EcGW~DeVr----------------~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+..-+.+-.+|.+.||.|+-+ ...+..|+.+|++.-.+++.++++
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~G~~~I~~eL~~KGI~~~~i~~al~~~ 106 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATEKAMREA 106 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCccHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 334445556677777776642 123445555676554555555443
No 16
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=60.26 E-value=7.7 Score=26.74 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHH---hCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHH
Q 033797 40 LMELLRERLVECGWKDEMKALCRAYIKK---KGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAF 105 (111)
Q Consensus 40 Lk~lL~~rL~EcGW~DeVr~~~re~i~~---~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~f 105 (111)
|.+.|..+|. ..+.+..+..|..+|.. .|-=..+++++.+.+- |+.+-...++..|+.|
T Consensus 5 L~e~L~~Ql~-~~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~------~~~~eve~vL~~iQ~~ 66 (130)
T 2k9m_A 5 ELEELQQNIK-LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLR------CSVEELEKVRQKVLRL 66 (130)
T ss_dssp HHHHHHHHHH-HHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTT------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHc-ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcC------CCHHHHHHHHHHHhcC
Confidence 5566666666 66666667777766633 3433457777777652 6777777777777654
No 17
>3eir_A Putative ATP/GTP binding protein; papain-like fold, unknown function; 2.10A {Burkholderia pseudomallei} PDB: 3eit_A 3gqm_A 4hcp_A 4hcn_A
Probab=59.99 E-value=17 Score=28.30 Aligned_cols=42 Identities=29% Similarity=0.624 Sum_probs=33.9
Q ss_pred HHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHH
Q 033797 62 RAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRA 104 (111)
Q Consensus 62 re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~ 104 (111)
-..+..+|.+.|++++|-.-+. +--.++|++++++|+..|-.
T Consensus 198 eDWmt~rg~~pIsLd~l~~lls-~ef~~l~dd~q~~lia~il~ 239 (281)
T 3eir_A 198 EDWISRRGSDPVSLDELNQLLS-KDFSKMPDDVQTRLLASILQ 239 (281)
T ss_dssp HHHHHHHTTCCBCHHHHHHHTS-GGGGGSCHHHHHHHHHHHHC
T ss_pred HHHHhhcCCCcccHHHHHHHHH-HHhhhCCHHHHHHHHHHHHh
Confidence 3467788999999999876554 55589999999999988754
No 18
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=56.68 E-value=18 Score=26.57 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhcChHHHH
Q 033797 24 QEIINIKMIESGEKEKLMELLRERLVECGWKDEM 57 (111)
Q Consensus 24 k~~I~~~LveSGe~erLk~lL~~rL~EcGW~DeV 57 (111)
...|.++|...|--+..-+.+-.+|.+.||.|+-
T Consensus 78 ~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~ 111 (221)
T 3d5l_A 78 ESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDH 111 (221)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHH
Confidence 3456777777786666777777889999998775
No 19
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=56.14 E-value=18 Score=23.49 Aligned_cols=27 Identities=4% Similarity=0.099 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
+.|-+.+.+.+.++|.+++|+.+|.++
T Consensus 12 ~~Il~aa~~l~~~~G~~~~tv~~Ia~~ 38 (195)
T 3ppb_A 12 QAILETALQLFVSQGFHGTSTATIARE 38 (195)
T ss_dssp HHHHHHHHHHHHHTCSTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 334444555555555555555555443
No 20
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=55.69 E-value=33 Score=21.27 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhh--hccCCHHHHHHHHHHHHHHHhh
Q 033797 53 WKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKG--RASIPDSIKTELLLRIRAFLAS 108 (111)
Q Consensus 53 W~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~A--r~~VP~~VK~Ell~~Ir~fL~~ 108 (111)
+-++++...+++|+..+.+++|.-.+-..+..+- .++- +=|..|=..|.+||..
T Consensus 13 sd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs--~kK~~I~~~I~~~L~~ 68 (70)
T 1q1v_A 13 TDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT--ERKDFIKTTVKELISL 68 (70)
T ss_dssp CHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCS--HHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCCh--HHHHHHHHHHHHHHhc
Confidence 4578899999999988888999988888876443 3332 4566666667777753
No 21
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=55.64 E-value=12 Score=23.15 Aligned_cols=27 Identities=7% Similarity=0.159 Sum_probs=17.1
Q ss_pred CCHHHHHHhhchhhhccCCHHHHHHHHHHHHHH
Q 033797 73 VTVDDLVHVITPKGRASIPDSIKTELLLRIRAF 105 (111)
Q Consensus 73 vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~f 105 (111)
.+++++...+- |+.+-...++.+|+.|
T Consensus 49 ~~l~eia~~l~------~~~~eve~vL~~lQ~~ 75 (76)
T 2k9l_A 49 KSVEEISDVLR------CSVEELEKVRQKVLRL 75 (76)
T ss_dssp CCHHHHHHHHT------SCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHcC------CCHHHHHHHHHHHhcC
Confidence 46666665552 6666667777777654
No 22
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=54.60 E-value=20 Score=23.24 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 57 MKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 57 Vr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
|-+.+.+.+.++|.+++|+.+|.+
T Consensus 11 Il~aa~~l~~~~G~~~~t~~~Ia~ 34 (191)
T 1sgm_A 11 ILHTASRLSQLQGYHATGLNQIVK 34 (191)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCccccCHHHHHH
Confidence 333344444444444444444443
No 23
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=53.51 E-value=12 Score=24.04 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWKDEMKALCRAYIKK 67 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~DeVr~~~re~i~~ 67 (111)
|+-|+.+|.+||.+-.+-.+++-+.|..++.
T Consensus 43 W~DL~gFL~qRlkDe~~A~~l~siFk~AW~s 73 (75)
T 2lo0_A 43 WDDLQGFLEQRLKDYDEANKLRVLFKEAWRS 73 (75)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999888764
No 24
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=53.37 E-value=21 Score=23.60 Aligned_cols=22 Identities=5% Similarity=0.309 Sum_probs=10.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHH
Q 033797 59 ALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 59 ~~~re~i~~~g~~~vt~~~L~~ 80 (111)
+.+.+.+.++|.+++|+.+|.+
T Consensus 21 ~aa~~l~~~~G~~~~ti~~Ia~ 42 (220)
T 3lhq_A 21 DVALRLFSQQGVSATSLAEIAN 42 (220)
T ss_dssp HHHHHHHHHHCSTTCCHHHHHH
T ss_pred HHHHHHHHHcCcccCCHHHHHH
Confidence 3344444444544445444443
No 25
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=53.01 E-value=5.1 Score=28.66 Aligned_cols=58 Identities=12% Similarity=0.235 Sum_probs=35.2
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhcChHHHHH-----------------HHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 25 EIINIKMIESGEKEKLMELLRERLVECGWKDEMK-----------------ALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 25 ~~I~~~LveSGe~erLk~lL~~rL~EcGW~DeVr-----------------~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
..|.++|..-|--+..-+.+-.+|.+.||.|+-+ ...+..|+.+|++.-.+++.++++
T Consensus 36 ~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~ 110 (177)
T 3e3v_A 36 KEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAEDALILY 110 (177)
T ss_dssp HHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4556666666766666677777888888877642 123345555676554454444443
No 26
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=53.00 E-value=20 Score=23.44 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=9.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHH
Q 033797 59 ALCRAYIKKKGTNNVTVDDLV 79 (111)
Q Consensus 59 ~~~re~i~~~g~~~vt~~~L~ 79 (111)
+.+.+.+.++|.+.+|+.+|.
T Consensus 21 ~aa~~l~~~~G~~~~ti~~Ia 41 (203)
T 3f1b_A 21 DAAVDVFSDRGFHETSMDAIA 41 (203)
T ss_dssp HHHHHHHHHHCTTTCCHHHHH
T ss_pred HHHHHHHHHcCcccccHHHHH
Confidence 334444444444444444443
No 27
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=52.98 E-value=22 Score=23.24 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
+.|-+.+.+.+.++|.+++|+++|.++
T Consensus 14 ~~il~aa~~lf~~~G~~~~tv~~Ia~~ 40 (196)
T 3he0_A 14 DQILAAAEQLIAESGFQGLSMQKLANE 40 (196)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 344455555555666666666655544
No 28
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=52.98 E-value=21 Score=23.11 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
.|-+.+.+.+.++|.+++|+.+|.++
T Consensus 12 ~Il~aa~~l~~~~G~~~~ti~~Ia~~ 37 (188)
T 3qkx_A 12 QIFSATDRLMAREGLNQLSMLKLAKE 37 (188)
T ss_dssp HHHHHHHHHHHHSCSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 34445555555666666666665544
No 29
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=52.89 E-value=21 Score=23.54 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
+.|-+.+.+.+.++|.+.+|+++|.+
T Consensus 6 ~~Il~aA~~lf~~~G~~~~s~~~IA~ 31 (190)
T 3vpr_A 6 DRILEEAAKLFTEKGYEATSVQDLAQ 31 (190)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHH
Confidence 34445555555555555555555544
No 30
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=52.32 E-value=22 Score=23.17 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
+.|-+.+.+.+.++|.+++|+++|.++
T Consensus 10 ~~Il~aa~~l~~~~G~~~~t~~~IA~~ 36 (199)
T 3qbm_A 10 ERVVAQAAALFNVSGYAGTAISDIMAA 36 (199)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcCCHHHHHHH
Confidence 445555666666667666776666654
No 31
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=51.94 E-value=21 Score=23.60 Aligned_cols=21 Identities=5% Similarity=0.140 Sum_probs=9.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHH
Q 033797 60 LCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 60 ~~re~i~~~g~~~vt~~~L~~ 80 (111)
.+.+.+.++|.+++|+.+|.+
T Consensus 26 aa~~l~~~~G~~~~s~~~Ia~ 46 (212)
T 1pb6_A 26 AALDTFSQFGFHGTRLEQIAE 46 (212)
T ss_dssp HHHHHHHHHCTTTCCHHHHHH
T ss_pred HHHHHHHHcCcchhhHHHHHH
Confidence 334444444444444444433
No 32
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=51.32 E-value=22 Score=23.59 Aligned_cols=27 Identities=11% Similarity=0.340 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re 63 (111)
+++|.+-...-+.+.|+. -.|+++|++
T Consensus 33 r~~Il~aa~~l~~~~G~~~~tv~~Ia~~ 60 (218)
T 3dcf_A 33 RTQIIKVATELFREKGYYATSLDDIADR 60 (218)
T ss_dssp HHHHHHHHHHHHHHTCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCcHHHHHHH
Confidence 456666666677777775 355555544
No 33
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=51.24 E-value=22 Score=23.23 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=9.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHH
Q 033797 60 LCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 60 ~~re~i~~~g~~~vt~~~L~~ 80 (111)
.+.+.+.++|.+++|+.+|.+
T Consensus 25 aa~~l~~~~G~~~~s~~~Ia~ 45 (206)
T 3kz9_A 25 IALEVFARRGIGRGGHADIAE 45 (206)
T ss_dssp HHHHHHHHSCCSSCCHHHHHH
T ss_pred HHHHHHHhcCcccccHHHHHH
Confidence 344444444444444444433
No 34
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=50.95 E-value=24 Score=23.17 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
++|-+.+.+.+.++|.+.+|+++|.++
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~Ia~~ 40 (203)
T 3b81_A 14 TELANKIWDIFIANGYENTTLAFIINK 40 (203)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCcHHHHHHH
Confidence 344455556666666666666666554
No 35
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=50.82 E-value=23 Score=23.28 Aligned_cols=27 Identities=7% Similarity=0.182 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWKD-EMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~D-eVr~~~re 63 (111)
+++|-+--..-+.+.|+.. .|+++|++
T Consensus 18 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~ 45 (211)
T 3him_A 18 AARIRAAAIEVFAAKGYGATTTREIAAS 45 (211)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 4455555566666677763 56655543
No 36
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=50.58 E-value=11 Score=24.86 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=27.8
Q ss_pred CHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHhh
Q 033797 74 TVDDLVHVITPKGRASIPDSIKTELLLRIRAFLAS 108 (111)
Q Consensus 74 t~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~ 108 (111)
-.++|+..+.=.++.+ |.+.|..+..+||+|=.+
T Consensus 49 EA~ell~qMelE~r~~-p~~~R~~~~~klr~Yk~d 82 (102)
T 1vcs_A 49 EARELLEQMDLEVREI-PPQSRGMYSNRMRSYKQE 82 (102)
T ss_dssp HHHHHHHHHHHHHTTS-CTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CHHhHHHHHHHHHHHHHH
Confidence 4567888888888876 999999999999998543
No 37
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=50.53 E-value=25 Score=23.04 Aligned_cols=29 Identities=17% Similarity=0.386 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+++|-+.+.+.+.++|.+++|+++|.++.
T Consensus 4 r~~Il~aA~~lf~~~Gy~~~s~~~Ia~~a 32 (179)
T 2eh3_A 4 KERILEVSKELFFEKGYQGTSVEEIVKRA 32 (179)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCHHHHHHHh
Confidence 45666778888888888888888887764
No 38
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=50.23 E-value=25 Score=23.12 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+.|-+.+.+.+.++|.+++|+++|.++.
T Consensus 15 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~a 42 (202)
T 3lwj_A 15 QKILTCSLDLFIEKGYYNTSIRDIIALS 42 (202)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHh
Confidence 3444556666667777777777776553
No 39
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=50.06 E-value=17 Score=23.77 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 57 MKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 57 Vr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
|-+.+.+.+.++|.+++|+++|.+
T Consensus 13 Il~aa~~l~~~~G~~~~t~~~Ia~ 36 (206)
T 3dew_A 13 LMEVATELFAQKGFYGVSIRELAQ 36 (206)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHhcCCcccCcHHHHHH
Confidence 334444444444444445444443
No 40
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=50.05 E-value=13 Score=29.39 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=29.5
Q ss_pred hcChHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhc--cCCHHHHHHHHHHHHHHH
Q 033797 50 ECGWKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRA--SIPDSIKTELLLRIRAFL 106 (111)
Q Consensus 50 EcGW~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~--~VP~~VK~Ell~~Ir~fL 106 (111)
|.+| ..++..+..++...+.+..+|++|+..|--.... -.++.++..+...|.++|
T Consensus 16 e~~W-~~L~~ai~~I~~~~~~~~~s~e~LY~~vy~lc~~~~~~~~~LY~~l~~~~~~~l 73 (391)
T 2wzk_A 16 EDKW-DFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFI 73 (391)
T ss_dssp HHHH-HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 4466 3666666666664454555677777766654432 123444444444444433
No 41
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=49.67 E-value=25 Score=23.34 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 38 EKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 38 erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
++|-+--..-+.+.|+. -.|+++|+
T Consensus 20 ~~Il~aa~~l~~~~G~~~~ti~~Ia~ 45 (207)
T 2rae_A 20 DRISTVGIELFTEQGFDATSVDEVAE 45 (207)
T ss_dssp HHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHH
Confidence 33444444445555553 24444443
No 42
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=48.97 E-value=27 Score=23.22 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhcChH-HHHHHHH
Q 033797 38 EKLMELLRERLVECGWK-DEMKALC 61 (111)
Q Consensus 38 erLk~lL~~rL~EcGW~-DeVr~~~ 61 (111)
++|-+--.+-+.+.|+. -.|++.|
T Consensus 15 ~~Il~aA~~lf~e~G~~~~t~~~IA 39 (192)
T 2fq4_A 15 KAILSASYELLLESGFKAVTVDKIA 39 (192)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHH
Confidence 34444444555555553 2344444
No 43
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=48.82 E-value=25 Score=23.35 Aligned_cols=27 Identities=7% Similarity=0.203 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
+.|-+.+.+.+.++|.+.+|+++|.++
T Consensus 13 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~ 39 (216)
T 3s5r_A 13 ELLLDAATTLFAEQGIAATTMAEIAAS 39 (216)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHT
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 344445555555556555555555443
No 44
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=48.64 E-value=18 Score=23.45 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
+++|-+.-..-+.+.|+. -.|++.|+
T Consensus 12 r~~Il~aa~~l~~~~G~~~~ti~~Ia~ 38 (196)
T 3col_A 12 QVKIQDAVAAIILAEGPAGVSTTKVAK 38 (196)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHH
Confidence 334444444555555552 34444443
No 45
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=48.61 E-value=18 Score=23.55 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
++|-+.+.+.+.++|.+++|+++|.++
T Consensus 5 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~ 31 (194)
T 3bqz_B 5 DKILGVAKELFIKNGYNATTTGEIVKL 31 (194)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 445566666777777777777776654
No 46
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=48.48 E-value=19 Score=23.38 Aligned_cols=23 Identities=9% Similarity=0.378 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhcChHH-HHHHHH
Q 033797 39 KLMELLRERLVECGWKD-EMKALC 61 (111)
Q Consensus 39 rLk~lL~~rL~EcGW~D-eVr~~~ 61 (111)
+|-+.-.+-+.+.|+.. .+++.|
T Consensus 12 ~Il~aa~~l~~~~G~~~~ti~~Ia 35 (194)
T 2g7s_A 12 DILQCARTLIIRGGYNSFSYADIS 35 (194)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHH
Confidence 34444444445555532 344444
No 47
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=47.94 E-value=27 Score=23.31 Aligned_cols=26 Identities=12% Similarity=0.372 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
+++|-+--.+-+.+.|+. -.|+++|+
T Consensus 16 r~~Il~aA~~lf~~~G~~~~s~~~Ia~ 42 (203)
T 3ccy_A 16 RDTIIERAAAMFARQGYSETSIGDIAR 42 (203)
T ss_dssp HHHHHHHHHHHHHHTCTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHH
Confidence 344555555555555654 24444443
No 48
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=47.88 E-value=20 Score=22.16 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
|.++|..+-.+.+++|...||++-+++.
T Consensus 21 R~kvrr~tE~~Are~G~~~IT~ev~~~A 48 (62)
T 2l09_A 21 RSQAKARIEQLARQAEQDIVTPELVEQA 48 (62)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeEcHHHHHHH
Confidence 5677777778888999999999988764
No 49
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=47.36 E-value=29 Score=22.91 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
.|-+.+.+.+.++|.+.+|+++|.++
T Consensus 18 ~Il~aa~~l~~~~G~~~~ti~~IA~~ 43 (212)
T 3knw_A 18 HILDSGFHLVLRKGFVGVGLQEILKT 43 (212)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 34444555555566666666655544
No 50
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=47.34 E-value=29 Score=23.00 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re 63 (111)
+++|-+--..-+.+-|+. -.+++.|++
T Consensus 21 r~~Il~aA~~lf~~~G~~~~t~~~IA~~ 48 (216)
T 3qqa_A 21 QEKIKAVALELFLTKGYQETSLSDIIKL 48 (216)
T ss_dssp HHHHHHHHHHHHHHTCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcChhhCCHHHHHHH
Confidence 345555556666677776 356666654
No 51
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=47.20 E-value=29 Score=22.85 Aligned_cols=20 Identities=5% Similarity=0.268 Sum_probs=8.4
Q ss_pred HHHHHHHHhCCCCCCHHHHH
Q 033797 60 LCRAYIKKKGTNNVTVDDLV 79 (111)
Q Consensus 60 ~~re~i~~~g~~~vt~~~L~ 79 (111)
.+.+.+.++|.+.+|+++|.
T Consensus 24 aa~~lf~~~G~~~~t~~~Ia 43 (213)
T 2qtq_A 24 TASNIMREGDVVDISLSELS 43 (213)
T ss_dssp HHHHHHHHHTSSCCCHHHHH
T ss_pred HHHHHHHHcCcccccHHHHH
Confidence 33344444444444444443
No 52
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=47.05 E-value=21 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
|.++|..+-.+.+++|...||++-+++.
T Consensus 22 R~kvrr~tE~~Are~G~~~IT~ev~~~A 49 (63)
T 2kru_A 22 RKKVRKNTDNYAREIGEPVVTADVFRKA 49 (63)
T ss_dssp HHHHHHHHHHHHHHHTCSEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeEcHHHHHHH
Confidence 4567777777788899999999988764
No 53
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=47.02 E-value=28 Score=23.26 Aligned_cols=26 Identities=8% Similarity=0.204 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
.|-+.+.+.+.++|.+++|+.+|.++
T Consensus 16 ~Il~aa~~l~~~~G~~~~ti~~Ia~~ 41 (189)
T 3vp5_A 16 RVYDACLNEFQTHSFHEAKIMHIVKA 41 (189)
T ss_dssp HHHHHHHHHHHHSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCcccccHHHHHHH
Confidence 34444455555555555555555443
No 54
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=46.92 E-value=20 Score=21.51 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHhh
Q 033797 70 TNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLAS 108 (111)
Q Consensus 70 ~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~ 108 (111)
....++.+|-+++.-. .+=..-.|.+|+.||.+|+..
T Consensus 10 l~klkV~eLK~~L~~r--GL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 10 LHKLKLAELKQECLAR--GLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp TTTSCHHHHHHHHHHH--TCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHc--CCCCCCcHHHHHHHHHHHHhc
Confidence 3456777777766543 333445799999999999976
No 55
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=46.73 E-value=64 Score=27.02 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=31.9
Q ss_pred HhCC---CCCCHHHHHHhhchh-------------hhccCCHHHHHHHHHHHHHHHhhh
Q 033797 67 KKGT---NNVTVDDLVHVITPK-------------GRASIPDSIKTELLLRIRAFLASA 109 (111)
Q Consensus 67 ~~g~---~~vt~~~L~~~I~P~-------------Ar~~VP~~VK~Ell~~Ir~fL~~~ 109 (111)
++|. ..|+|.+|.+--.+. -|..||.+--....+.|.+||+.+
T Consensus 95 ~~G~~~iP~i~f~di~~~~~s~~~~~~ir~rG~vVIRgvvp~e~A~~~~~~~~~yl~~n 153 (461)
T 2dbn_A 95 AQGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGWDQSMLDYLDRN 153 (461)
T ss_dssp HTTCCSSCEEEHHHHHHTCCCHHHHHHHHHHSEEEEETSSCHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCcceecHHHhcCCCCCHHHHHHHHhccEEEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 5663 455898887643222 267899999999999999999775
No 56
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=46.57 E-value=27 Score=23.18 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
+.|-+.+.+.+.++|.+.+|+++|.+
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~ 32 (185)
T 2yve_A 7 EMILRTAIDYIGEYSLETLSYDSLAE 32 (185)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhccHHHHHH
Confidence 33444455555555555555555444
No 57
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=46.19 E-value=30 Score=23.83 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
+++|.+...+-+.+.|+. -.|+++|+
T Consensus 45 r~~Il~aA~~l~~~~G~~~~tv~~IA~ 71 (229)
T 3bni_A 45 LTRILDACADLLDEVGYDALSTRAVAL 71 (229)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcChhhccHHHHHH
Confidence 344555555555555654 34444443
No 58
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=46.10 E-value=46 Score=22.38 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=36.7
Q ss_pred HHHHHhcChH-HHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 033797 45 RERLVECGWK-DEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTEL 98 (111)
Q Consensus 45 ~~rL~EcGW~-DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~El 98 (111)
.+.|.+.|.+ ..-|...-++|.+.+ ..+|.++|++.+....-.+=+..|++-|
T Consensus 10 ~~~l~~~g~r~T~qR~~Il~~L~~~~-~~~sa~ei~~~l~~~~~~is~aTVYR~L 63 (145)
T 2fe3_A 10 LETLKETGVRITPQRHAILEYLVNSM-AHPTADDIYKALEGKFPNMSVATVYNNL 63 (145)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHCS-SCCCHHHHHHHHGGGCTTCCHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCChhhHHHHH
Confidence 3456677764 667777788887654 5799999999998765444445555443
No 59
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=45.89 E-value=32 Score=22.30 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 57 MKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 57 Vr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
|-+.+.+.+.++|.+.+|+.+|.++
T Consensus 15 Il~aa~~lf~~~G~~~~t~~~IA~~ 39 (197)
T 3rd3_A 15 LLDTGYRIMAVKGFSGVGLNEILQS 39 (197)
T ss_dssp HHHHHHHHHHHHCSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCcccCCHHHHHHH
Confidence 3344444444555555555554443
No 60
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=45.76 E-value=20 Score=23.28 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWKD-EMKALCRAY 64 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~D-eVr~~~re~ 64 (111)
+++|-+--..-+.+.|+.. .+++.|++.
T Consensus 14 r~~Il~aA~~lf~~~G~~~~t~~~IA~~a 42 (199)
T 3on2_A 14 RRVLLARAESTLEKDGVDGLSLRQLAREA 42 (199)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcChhhhhHHHHHHHh
Confidence 4555566666677777764 666666543
No 61
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=45.72 E-value=31 Score=22.44 Aligned_cols=28 Identities=7% Similarity=0.185 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++|-+.+.+.+.++|.+++|+++|.++.
T Consensus 10 ~~Il~aA~~l~~~~G~~~~s~~~IA~~a 37 (180)
T 2fd5_A 10 ARILGAATQALLERGAVEPSVGEVMGAA 37 (180)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 3455556666666666666666666543
No 62
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=45.56 E-value=30 Score=23.29 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHhCCCCC-------CHHHHHHhhchhhhcc
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRAYIKKKGTNNV-------TVDDLVHVITPKGRAS 89 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re~i~~~g~~~v-------t~~~L~~~I~P~Ar~~ 89 (111)
+++|-+-..+-+.+.|+. -.|+++|+ +-|+..- |-++|+..+.-...+-
T Consensus 30 r~~Il~aa~~lf~~~G~~~~tv~~IA~----~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~ 86 (215)
T 2qko_A 30 RAALVNAAIEVLAREGARGLTFRAVDV----EANVPKGTASNYFPSRDDLFDQVGKRIHER 86 (215)
T ss_dssp HHHHHHHHHHHHHHTCTTTCCHHHHHH----HSSSTTTCHHHHCSCHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHhChhhccHHHHHH----HcCCCcchHHHhCCCHHHHHHHHHHHHHHH
Confidence 455666666777777774 34555554 3454433 4466666666554443
No 63
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=45.55 E-value=31 Score=22.96 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 57 MKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 57 Vr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
|-+.+.+.+.++|.+.+|+++|.+
T Consensus 16 Il~aA~~lf~~~G~~~~s~~~IA~ 39 (212)
T 2ras_A 16 LVDVAQAIVEERGGAGLTLSELAA 39 (212)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHhCcccCcHHHHHH
Confidence 334444444445544555544443
No 64
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=45.51 E-value=22 Score=23.32 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 38 EKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 38 erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
++|-+.-.+-+.+.|+. -.+++.|+
T Consensus 20 ~~Il~aa~~lf~~~G~~~~ti~~Ia~ 45 (208)
T 3cwr_A 20 ESIVGAAQRLLSSGGAAAMTMEGVAS 45 (208)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHhccHHHHHH
Confidence 33344444445555554 24444443
No 65
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=45.41 E-value=32 Score=23.01 Aligned_cols=25 Identities=8% Similarity=0.254 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
+|-+.+.+.+.++|.+++|+++|.+
T Consensus 14 ~Il~aA~~lf~~~G~~~~s~~~IA~ 38 (210)
T 3vib_A 14 HLMLAALETFYRKGIARTSLNEIAQ 38 (210)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHH
Confidence 3444455555555555555555443
No 66
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=45.41 E-value=32 Score=22.96 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
.|-+.+.+.+.++|.+++|+++|.+
T Consensus 14 ~Il~aA~~lf~~~G~~~~s~~~Ia~ 38 (197)
T 2f07_A 14 KILQAAIEVISEKGLDKASISDIVK 38 (197)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHH
Confidence 3444444444555555555555443
No 67
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=44.82 E-value=32 Score=23.13 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
+++|-+.+.+.+.++|.+++|+++|.++
T Consensus 10 r~~Il~aA~~lf~~~G~~~~s~~~IA~~ 37 (202)
T 2d6y_A 10 KARIFEAAVAEFARHGIAGARIDRIAAE 37 (202)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 3445555666666666666666666554
No 68
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=44.78 E-value=22 Score=24.00 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhcCh
Q 033797 39 KLMELLRERLVECGW 53 (111)
Q Consensus 39 rLk~lL~~rL~EcGW 53 (111)
+|.+.-.+-+.|-|+
T Consensus 16 ~Il~aA~~l~~e~G~ 30 (198)
T 3cjd_A 16 KLIDLAEAQIEAEGL 30 (198)
T ss_dssp HHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhCCh
Confidence 344444444445555
No 69
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=44.78 E-value=16 Score=24.31 Aligned_cols=44 Identities=7% Similarity=0.120 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHH
Q 033797 58 KALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRA 104 (111)
Q Consensus 58 r~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~ 104 (111)
=+.|.++++++| +.++|.+|+.+|...-. .+++-..+-+.++-.
T Consensus 16 iDvAy~iL~~~~-~~~~F~dL~~eV~~~~~--~s~ee~~~~iaqfYT 59 (99)
T 2krc_A 16 VEIAHELFEEHK-KPVPFQELLNEIASLLG--VKKEELGDRIAQFYT 59 (99)
T ss_dssp HHHHHHHHHHHC-SCEEHHHHHHHHHHHHT--SCGGGGTHHHHHHHH
T ss_pred HHHHHHHHHHcC-CcccHHHHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 357889999998 78999999999998753 344322333444443
No 70
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=44.53 E-value=32 Score=23.00 Aligned_cols=25 Identities=12% Similarity=0.379 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 38 EKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 38 erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
++|-+--.+-+.+.|+. -.|+++|+
T Consensus 17 ~~Il~aA~~lf~~~G~~~~s~~~IA~ 42 (204)
T 2ibd_A 17 TELLDIAATLFAERGLRATTVRDIAD 42 (204)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCchhcCHHHHHH
Confidence 33444444445555554 24444443
No 71
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=44.37 E-value=24 Score=22.88 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhcChH-HHHHHHH
Q 033797 38 EKLMELLRERLVECGWK-DEMKALC 61 (111)
Q Consensus 38 erLk~lL~~rL~EcGW~-DeVr~~~ 61 (111)
++|-+--..-+.+.|+. -.+++.|
T Consensus 13 ~~Il~aa~~l~~~~G~~~~t~~~IA 37 (191)
T 3on4_A 13 ERILAVAEALIQKDGYNAFSFKDIA 37 (191)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHH
Confidence 33444444444444543 3344333
No 72
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=44.18 E-value=33 Score=22.90 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWKD-EMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~D-eVr~~~re 63 (111)
+++|-+.-..-+.+.|+.. .|++.|++
T Consensus 32 r~~Il~aA~~l~~~~G~~~~t~~~IA~~ 59 (222)
T 3bru_A 32 HQSLIRAGLEHLTEKGYSSVGVDEILKA 59 (222)
T ss_dssp HHHHHHHHHHHHHHSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCcHHHHHHH
Confidence 4556666666777777643 55555543
No 73
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=44.16 E-value=35 Score=22.72 Aligned_cols=26 Identities=8% Similarity=0.241 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
.|-+.+.+.+.++|.+++|+++|.++
T Consensus 13 ~Il~aA~~lf~~~G~~~~t~~~Ia~~ 38 (204)
T 3anp_C 13 RIFRAAMELFRNRGFQETTATEIAKA 38 (204)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHH
Confidence 34444555555556656666555443
No 74
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=44.16 E-value=20 Score=23.20 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Q 033797 58 KALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 58 r~~~re~i~~~g~~~vt~~~L~~ 80 (111)
-+.+.+.+.++|.+.+|+.+|.+
T Consensus 18 l~aa~~l~~~~G~~~~tv~~Ia~ 40 (177)
T 3kkc_A 18 YNAFISLLQENDYSKITVQDVIG 40 (177)
T ss_dssp HHHHHHHTTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHhCChhHhhHHHHHH
Confidence 33344444444544555544443
No 75
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=43.99 E-value=35 Score=22.70 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=9.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHH
Q 033797 59 ALCRAYIKKKGTNNVTVDDLV 79 (111)
Q Consensus 59 ~~~re~i~~~g~~~vt~~~L~ 79 (111)
+.+.+.+.++|.+.+|+++|.
T Consensus 19 ~aA~~lf~~~G~~~~s~~~IA 39 (197)
T 2hyt_A 19 ATARKVFSERGYADTSMDDLT 39 (197)
T ss_dssp HHHHHHHHHHCTTTCCHHHHH
T ss_pred HHHHHHHHHhCcccCCHHHHH
Confidence 334444444444444444443
No 76
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=43.69 E-value=35 Score=22.67 Aligned_cols=27 Identities=7% Similarity=0.135 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
+.|-+.+.+.+.++|.+++|+.+|.++
T Consensus 14 ~~Il~aA~~lf~~~G~~~~ti~~Ia~~ 40 (216)
T 3f0c_A 14 ELIINAAQKRFAHYGLCKTTMNEIASD 40 (216)
T ss_dssp HHHHHHHHHHHHHHCSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 344444555555555555555555443
No 77
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=43.64 E-value=24 Score=22.93 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re 63 (111)
+++|-+--.+-+.+.|+. -.|++.|++
T Consensus 10 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~ 37 (183)
T 1zk8_A 10 LQKIVETAAEIADANGVQEVTLASLAQT 37 (183)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccCHHHHHHH
Confidence 445555555666666665 355555543
No 78
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=43.49 E-value=24 Score=23.40 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhcCh
Q 033797 38 EKLMELLRERLVECGW 53 (111)
Q Consensus 38 erLk~lL~~rL~EcGW 53 (111)
++|.+-..+-+.+.|+
T Consensus 12 ~~Il~aa~~l~~~~G~ 27 (193)
T 2dg8_A 12 ERILAATLDLIAEEGI 27 (193)
T ss_dssp HHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHhCh
Confidence 4444444455555554
No 79
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=43.28 E-value=36 Score=22.93 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
.|-+.+.+.+.++|.+.+|+++|.+
T Consensus 15 ~Il~aA~~lf~~~G~~~~s~~~IA~ 39 (219)
T 2w53_A 15 GILDAAEACFHEHGVARTTLEMIGA 39 (219)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHH
Confidence 3334444444444444444444443
No 80
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=42.85 E-value=36 Score=22.20 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
+.|-+.+.+.+.++|.+.+|+++|.++
T Consensus 11 ~~Il~aA~~l~~~~G~~~~t~~~IA~~ 37 (194)
T 3dpj_A 11 DQIVAAADELFYRQGFAQTSFVDISAA 37 (194)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 344455556666666666666666544
No 81
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=42.62 E-value=37 Score=22.65 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+.|-+.|.+.+.++|.+++|+++|.++.
T Consensus 15 ~~Il~aA~~lf~~~Gy~~ts~~~IA~~a 42 (205)
T 1rkt_A 15 AEILEAAKTVFKRKGFELTTMKDVVEES 42 (205)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHH
Confidence 4455566666677777777777766553
No 82
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=42.59 E-value=38 Score=22.60 Aligned_cols=27 Identities=19% Similarity=0.291 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
++|-+.+.+.+.++|.+.+|+++|.++
T Consensus 10 ~~Il~aA~~lf~~~G~~~ts~~~IA~~ 36 (197)
T 2gen_A 10 DEILQAALACFSEHGVDATTIEMIRDR 36 (197)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 445555566666666666666665544
No 83
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=42.58 E-value=37 Score=22.28 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
+|-+.+.+.+.++|.+.+|+++|.+
T Consensus 11 ~Il~aA~~lf~~~G~~~~t~~~IA~ 35 (192)
T 2zcm_A 11 KIIDNAITLFSEKGYDGTTLDDISK 35 (192)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHH
Confidence 3444444555555555555554443
No 84
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=42.33 E-value=26 Score=23.20 Aligned_cols=27 Identities=4% Similarity=0.315 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhcCh-HHHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGW-KDEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW-~DeVr~~~re 63 (111)
+++|-+--..-+.+.|+ .-.|++.|++
T Consensus 28 r~~Il~aA~~l~~~~G~~~~t~~~Ia~~ 55 (217)
T 3mvp_A 28 RNKILQVAKDLFSDKTYFNVTTNEIAKK 55 (217)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccccCHHHHHHH
Confidence 34455555566666676 3455555543
No 85
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=42.02 E-value=23 Score=23.35 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALC 61 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~ 61 (111)
+++|-+--..-+.+.|+. -.|++.|
T Consensus 9 r~~Il~aA~~l~~~~G~~~~t~~~Ia 34 (195)
T 2dg7_A 9 EQRLKRAALELYSEHGYDNVTVTDIA 34 (195)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccCHHHHH
Confidence 344444444555555543 2344444
No 86
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=41.80 E-value=26 Score=23.49 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re 63 (111)
+++|.+.-.+-+.+.|+. -.|+++|++
T Consensus 25 r~~Il~aA~~lf~~~G~~~~t~~~IA~~ 52 (214)
T 2zb9_A 25 RAEVLHAVGELLLTEGTAQLTFERVARV 52 (214)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 455556666667777774 355555543
No 87
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=41.51 E-value=40 Score=22.54 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhcCh
Q 033797 38 EKLMELLRERLVECGW 53 (111)
Q Consensus 38 erLk~lL~~rL~EcGW 53 (111)
++|-+--.+-+.+.|+
T Consensus 14 ~~Il~aA~~lf~~~G~ 29 (210)
T 2xdn_A 14 AQIIEAAERAFYKRGV 29 (210)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCc
Confidence 3344444444555554
No 88
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=41.43 E-value=35 Score=22.66 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhcChH-HHHHHHH
Q 033797 39 KLMELLRERLVECGWK-DEMKALC 61 (111)
Q Consensus 39 rLk~lL~~rL~EcGW~-DeVr~~~ 61 (111)
+|-+--..-+.+.|+. -.+++.|
T Consensus 21 ~Il~aA~~l~~~~G~~~~t~~~IA 44 (218)
T 3gzi_A 21 KLILAARNLFIERPYAQVSIREIA 44 (218)
T ss_dssp HHHHHHHHHHHTSCCSCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCCcCCHHHHH
Confidence 3334444444555553 2344433
No 89
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=40.95 E-value=41 Score=22.54 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
+|-+.+.+.+.++|.+.+|+++|.++
T Consensus 18 ~Il~aA~~lf~~~G~~~~s~~~IA~~ 43 (199)
T 3crj_A 18 EIMQATYRALREHGYADLTIQRIADE 43 (199)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 34444555555555555555555443
No 90
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=40.91 E-value=40 Score=22.93 Aligned_cols=25 Identities=12% Similarity=0.341 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
+|-+.+.+.+.++|.+++|+++|.+
T Consensus 13 ~Il~aA~~lf~~~Gy~~ts~~~IA~ 37 (215)
T 1ui5_A 13 TIIGAAADLFDRRGYESTTLSEIVA 37 (215)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHH
Confidence 3444455555555555555555544
No 91
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=40.90 E-value=41 Score=22.56 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
+.|-+.+.+.+.++|.+++|+++|.++
T Consensus 15 ~~Il~aA~~lf~~~G~~~ts~~~IA~~ 41 (211)
T 3bhq_A 15 REIIQAATAAFISKGYDGTSMEEIATK 41 (211)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 334445555555566666666555443
No 92
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=40.76 E-value=26 Score=23.22 Aligned_cols=27 Identities=0% Similarity=0.182 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re 63 (111)
+++|-+-...-+.+.|+. -.|+++|++
T Consensus 15 r~~Il~aa~~lf~~~G~~~~tv~~Ia~~ 42 (195)
T 2iu5_A 15 QKIIAKAFKDLMQSNAYHQISVSDIMQT 42 (195)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeeCHHHHHHH
Confidence 455556666666677764 355555554
No 93
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=40.69 E-value=83 Score=21.29 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=36.9
Q ss_pred HHHHHHhcChH-HHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 033797 44 LRERLVECGWK-DEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTEL 98 (111)
Q Consensus 44 L~~rL~EcGW~-DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~El 98 (111)
+.+.|.+.|.+ ..-|...-+++.+.+ ..+|.++|++.+..+.-.+=+..|++-|
T Consensus 14 ~~~~l~~~g~r~T~qR~~IL~~l~~~~-~~~sa~ei~~~l~~~~~~is~aTVYR~L 68 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQREEVVSVLYRSG-THLSPEEITHSIRQKDKNTSISSVYRIL 68 (150)
T ss_dssp HHHHHHHCC--CHHHHHHHHHHHHHCS-SCBCHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHhhHHHHH
Confidence 44567778875 677777888887664 5799999999998765444455565543
No 94
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=40.40 E-value=48 Score=25.62 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHh
Q 033797 52 GWKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLA 107 (111)
Q Consensus 52 GW~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~ 107 (111)
.|. .++.....+.... ....+|++|+..|.-.......+.+...+...+.+++.
T Consensus 13 ~W~-~L~~ai~~I~~~~-~~~~s~eeLY~~vy~lc~~~~g~~LY~~l~~~~~~~l~ 66 (354)
T 4a64_A 13 TWQ-KLKEAVEAIQNST-SIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIK 66 (354)
T ss_dssp HHH-HHHHHHHHHHTTC-CCCSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 443 3445555554433 34678888888888777777777777777776666664
No 95
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=40.13 E-value=27 Score=23.13 Aligned_cols=27 Identities=7% Similarity=0.375 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re 63 (111)
+++|-+--..-+.+.|+. -.+++.|++
T Consensus 15 r~~Il~aA~~lf~~~G~~~~t~~~IA~~ 42 (217)
T 3nrg_A 15 RSRLIDVLLDEFAQNDYDSVSINRITER 42 (217)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 455555566666677765 355555544
No 96
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=40.12 E-value=41 Score=22.62 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 57 MKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 57 Vr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
|-+.+.+.+.++|.+++|+++|.+
T Consensus 16 Il~aA~~lf~~~G~~~~s~~~IA~ 39 (210)
T 2wui_A 16 ILDAAERVFLEKGVGTTAMADLAD 39 (210)
T ss_dssp HHHHHHHHHHHSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCccccCHHHHHH
Confidence 333444444444544455444433
No 97
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=40.11 E-value=20 Score=23.09 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
.|-+.+.+.+.++|.+++|+++|.++
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~ 33 (170)
T 3egq_A 8 RIIEAALRLYMKKPPHEVSIEEIARE 33 (170)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCcHHHHHHH
Confidence 34444444555555555555555443
No 98
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=40.07 E-value=42 Score=22.79 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
+++|-+--.+-+.+.|+. -.+++.|+
T Consensus 37 r~~Il~aA~~lf~~~G~~~~t~~~IA~ 63 (221)
T 3g7r_A 37 RARLLGTATRIFYAEGIHSVGIDRITA 63 (221)
T ss_dssp HHHHHHHHHHHHHHHCSTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHH
Confidence 344444444455555554 24444443
No 99
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=39.82 E-value=9.5 Score=19.66 Aligned_cols=14 Identities=36% Similarity=0.745 Sum_probs=11.0
Q ss_pred CCCCCCCCCCchhh
Q 033797 2 RNSVNRPPTPDAVE 15 (111)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (111)
|+|.-+||+|...+
T Consensus 4 rhsivqppapppna 17 (26)
T 2lkw_A 4 RHSIVQPPAPPPNA 17 (26)
T ss_pred ccccccCCCcCCCe
Confidence 78889999987554
No 100
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=39.52 E-value=43 Score=22.46 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 57 MKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 57 Vr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
|-+.+.+.+.++| +.+|+++|.+
T Consensus 25 Il~aA~~lf~~~G-~~~s~~~IA~ 47 (215)
T 2hku_A 25 LFTAATELFLEHG-EGVPITQICA 47 (215)
T ss_dssp HHHHHHHHHHHHC-TTSCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcCHHHHHH
Confidence 3334444444455 5555544443
No 101
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=39.21 E-value=29 Score=23.23 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
.|-+.+.+.+.++|.+++|+++|.+
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~ 31 (212)
T 3rh2_A 7 KIIQASLELFNEHGERTITTNHIAA 31 (212)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHH
Confidence 3344444444445554455554443
No 102
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=39.17 E-value=42 Score=23.65 Aligned_cols=23 Identities=4% Similarity=0.164 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhcChH-HHHHHHH
Q 033797 39 KLMELLRERLVECGWK-DEMKALC 61 (111)
Q Consensus 39 rLk~lL~~rL~EcGW~-DeVr~~~ 61 (111)
+|-+-..+-+.+.|+. -.|+++|
T Consensus 52 ~Il~AA~~lf~e~G~~~~Ti~~IA 75 (260)
T 2of7_A 52 AIRAATYGLIRQQGYEATTVEQIA 75 (260)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHH
T ss_pred HHHHHHHHHHHHhCcccccHHHHH
Confidence 3334444444444543 2344444
No 103
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=39.11 E-value=29 Score=22.26 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHhhh
Q 033797 70 TNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLASA 109 (111)
Q Consensus 70 ~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~~ 109 (111)
....++.+|=+++.- |.+=..-.|.||+.||++|++..
T Consensus 26 l~klkVaeLK~eLk~--RGL~~sG~KaeLIeRL~~~~~~~ 63 (75)
T 2kvu_A 26 LDDMKVAELKQELKL--RSLPVSGTKTELIERLRAYQDQI 63 (75)
T ss_dssp TTTSCHHHHHHHHHH--TTCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHCcHHHHHHHHHH--cCCCCCCCHHHHHHHHHHHHHcc
Confidence 345667777666653 33333456999999999998763
No 104
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=38.83 E-value=41 Score=23.16 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 57 MKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 57 Vr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
|-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 21 il~aA~~l~~~~G~~~~s~~~IA~~a 46 (216)
T 2oi8_A 21 IKDHAWEQIATAGASALSLNAIAKRM 46 (216)
T ss_dssp HHHHHHHHHHHHCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHHhcCcccCCHHHHHHHh
Confidence 34445556666666666666665543
No 105
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=38.55 E-value=48 Score=22.01 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++|-+.+.+.+.++|.+.+|+++|.++.
T Consensus 13 ~~Il~aA~~lf~~~G~~~~s~~~IA~~a 40 (194)
T 2nx4_A 13 RSITAAAWRLIAARGIEAANMRDIATEA 40 (194)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHh
Confidence 4455566666677777777777766543
No 106
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=38.18 E-value=32 Score=23.00 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re 63 (111)
+++|-+--.+-+.+.|+. -.|+++|++
T Consensus 17 r~~Il~aA~~lf~~~G~~~~s~~~IA~~ 44 (221)
T 3c2b_A 17 QNAVLDQALRLLVEGGEKALTTSGLARA 44 (221)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCHHHHHHH
Confidence 445666666667777775 356655544
No 107
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=38.08 E-value=56 Score=25.94 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=38.5
Q ss_pred cChHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHh
Q 033797 51 CGWKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLA 107 (111)
Q Consensus 51 cGW~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~ 107 (111)
..| ..++.....+.... ....+|++|+..|.-......++.+...+...|.++|.
T Consensus 32 ~~W-~~L~~ai~~I~~~~-~~~~s~eeLY~~vy~lc~~k~g~~LY~~l~~~~~~~l~ 86 (410)
T 4ap2_B 32 SIW-DLLKNAIQEIQRKN-NSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLI 86 (410)
T ss_dssp HHH-HHHHHHHHHHHTTC-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 456 34555566665543 35689999999998777777777777777777776664
No 108
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=37.97 E-value=32 Score=23.61 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re 63 (111)
+++|-+--.+-+.+.||. -.|+++|++
T Consensus 42 r~~Il~aA~~lf~~~G~~~~t~~~IA~~ 69 (225)
T 2id3_A 42 REAVLLAAGDALAADGFDALDLGEIARR 69 (225)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 455666666677777775 455555543
No 109
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=37.54 E-value=30 Score=24.16 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re 63 (111)
+++|.+...+-+.+.|+. -.|+++|++
T Consensus 48 r~~Il~aA~~lf~~~G~~~~t~~~IA~~ 75 (245)
T 3aqt_A 48 RARLITSARTLMAERGVDNVGIAEITEG 75 (245)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCcHHHHHHH
Confidence 455555666666677763 355555543
No 110
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=37.53 E-value=37 Score=23.34 Aligned_cols=61 Identities=25% Similarity=0.287 Sum_probs=37.3
Q ss_pred HHHHHHHH-HHhcchHHHHHHHHHHHHH---hcChHHHHHHHH-HHHH--HHhCCCCCCHHHHHHhhc
Q 033797 23 LQEIINIK-MIESGEKEKLMELLRERLV---ECGWKDEMKALC-RAYI--KKKGTNNVTVDDLVHVIT 83 (111)
Q Consensus 23 lk~~I~~~-LveSGe~erLk~lL~~rL~---EcGW~DeVr~~~-re~i--~~~g~~~vt~~~L~~~I~ 83 (111)
||+....+ |--||.+..|.+-|.+.|. ..||.|.++-.+ +..| ...|..-.+|++|+..|.
T Consensus 45 LK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~~~g~~D~~rl~ai~~lI~~~~~g~plP~~~~l~~alr 112 (114)
T 2rnn_A 45 LKDICRSVSFPVSGRKAVLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKNEPLPVYKDLWNALR 112 (114)
T ss_dssp HHHHHHHTTCCTTSCHHHHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCcHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 44444332 3347777666666655543 457999888766 2233 224667789999998764
No 111
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=37.50 E-value=50 Score=21.51 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
+|-+.+.+.+.++|.+ +|+++|.+
T Consensus 13 ~Il~aA~~lf~~~G~~-~t~~~IA~ 36 (190)
T 3jsj_A 13 RLLEAAAALTYRDGVG-IGVEALCK 36 (190)
T ss_dssp HHHHHHHHHHHHHCTT-CCHHHHHH
T ss_pred HHHHHHHHHHHHhCcc-ccHHHHHH
Confidence 3334444444444544 55444443
No 112
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=37.45 E-value=32 Score=22.81 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWKD-EMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~D-eVr~~~re 63 (111)
+++|-+--.+-+.+.|+.. .|++.|++
T Consensus 10 r~~Il~aA~~lf~~~G~~~~t~~~IA~~ 37 (199)
T 2o7t_A 10 REHIITTTCNLYRTHHHDSLTMENIAEQ 37 (199)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCccCCHHHHHHH
Confidence 4566666677777778776 67776654
No 113
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=37.07 E-value=49 Score=22.06 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
.|-+.|.+.+.++|.+.+|+++|.+
T Consensus 13 ~Il~aA~~lf~~~G~~~~s~~~IA~ 37 (203)
T 3cdl_A 13 SIVQAAIAEFGDRGFEITSMDRIAA 37 (203)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCchhcCHHHHHH
Confidence 3444455555555555555555443
No 114
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=36.82 E-value=34 Score=23.06 Aligned_cols=26 Identities=12% Similarity=0.362 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
+++|-+--.+-+.+.|+. -.|++.|+
T Consensus 10 r~~Il~aA~~lf~~~Gy~~~s~~~IA~ 36 (206)
T 1vi0_A 10 YMQIIDAAVEVIAENGYHQSQVSKIAK 36 (206)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHH
Confidence 344445555555566654 24555554
No 115
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=36.04 E-value=33 Score=23.59 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re 63 (111)
+++|.+-..+-+.+.|+. -.|+++|++
T Consensus 15 r~~Il~AA~~l~~~~G~~~~tv~~IA~~ 42 (231)
T 2qib_A 15 RQQLIGVALDLFSRRSPDEVSIDEIASA 42 (231)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchhcCHHHHHHH
Confidence 455666666777777773 355555543
No 116
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=35.73 E-value=36 Score=23.24 Aligned_cols=26 Identities=4% Similarity=0.135 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
+++|-+--.+-+.+.|+. -.|++.|+
T Consensus 30 r~~Il~AA~~lf~~~G~~~~t~~~IA~ 56 (217)
T 3hta_A 30 RQRIIDAAIRVVGQKGIAGLSHRTVAA 56 (217)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHH
Confidence 445555555666666763 24555444
No 117
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=35.58 E-value=34 Score=23.55 Aligned_cols=27 Identities=7% Similarity=0.088 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhcCh-HHHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGW-KDEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW-~DeVr~~~re 63 (111)
+++|-+--..-+.+.|+ .-.|+++|++
T Consensus 46 r~~Il~aA~~lf~e~G~~~~t~~~IA~~ 73 (236)
T 3q0w_A 46 ELAILATAENLLEDRPLADISVDDLAKG 73 (236)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 44566666666777777 4456655544
No 118
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=35.53 E-value=36 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
+.|-+.+.+.+.++|.+++|+++|.++
T Consensus 10 e~Il~aA~~lf~~~G~~~~s~~~IA~~ 36 (178)
T 4hku_A 10 EIILNMAEKIIYEKGMEKTTLYDIASN 36 (178)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHH
Confidence 334444444455555555555554443
No 119
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=35.51 E-value=83 Score=20.67 Aligned_cols=40 Identities=18% Similarity=0.072 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHhcchHHHHHHHHHHHHH--hcChHHHHHHH
Q 033797 21 PTLQEIINIKMIESGEKEKLMELLRERLV--ECGWKDEMKAL 60 (111)
Q Consensus 21 ~~lk~~I~~~LveSGe~erLk~lL~~rL~--EcGW~DeVr~~ 60 (111)
.+-++.|.+.-..+|+......+|..-+. ..||....-..
T Consensus 43 ~~d~E~I~a~~~~~G~~~aa~~LL~~L~r~~~~gWf~~fl~A 84 (100)
T 2lwd_A 43 NQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLA 84 (100)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHhcCcCCcHHHHHHH
Confidence 44588999999999999999999986555 67999887643
No 120
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=35.25 E-value=40 Score=22.62 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
++|-+.+.+.+.++|.+.+|+++|.++
T Consensus 14 ~~Il~aA~~lF~~~Gy~~ts~~~IA~~ 40 (202)
T 2i10_A 14 QVALQTAMELFWRQGYEGTSITDLTKA 40 (202)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 445555666666667666676666544
No 121
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=34.88 E-value=38 Score=22.94 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
+++|.+-...-+.+.|+. -.|++.|+
T Consensus 7 r~~Il~aA~~lf~~~G~~~~t~~~IA~ 33 (228)
T 3nnr_A 7 RDKILLSSLELFNDKGERNITTNHIAA 33 (228)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhcCHHHHHH
Confidence 444555555555555654 34444444
No 122
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=34.79 E-value=54 Score=21.53 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWKDEMKALC 61 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~DeVr~~~ 61 (111)
+++|-+.-..-+.+.|+.-.+++.|
T Consensus 17 r~~Il~aA~~lf~~~G~~~s~~~IA 41 (194)
T 2q24_A 17 RDKILAAAVRVFSEEGLDAHLERIA 41 (194)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCCCHHHHH
Confidence 5666677777777788743444444
No 123
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=34.62 E-value=33 Score=23.52 Aligned_cols=60 Identities=28% Similarity=0.495 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHH
Q 033797 36 EKEKLMELLRERLVECGWKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFL 106 (111)
Q Consensus 36 e~erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL 106 (111)
+|--|-.+|+.+|-+ |+|.+.+...+....++.+.+...+..|+ .-.|.. +-+.|+++-|
T Consensus 29 Dy~PLLALL~r~Ltd----eev~~Va~~L~~~~~i~~~dI~~~I~~vt----~~~Ps~---eDI~RV~arL 88 (112)
T 2lky_A 29 DRVPLLALLTRRLTN----DEIKAIAEDLEKRAHFDHIDIGVLITQMT----DEMPRE---EDIERVRRHL 88 (112)
T ss_dssp HHHHHHHHHTTTCCH----HHHHHHHHHHHHHCCCSCCCSHHHHHHHT----TCCCCH---HHHHHHHHHH
T ss_pred chHHHHHHHcccCCH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHh----ccCCCH---HHHHHHHHHH
Confidence 677788999999987 89999999998775556666666666665 333322 3345555555
No 124
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=34.52 E-value=39 Score=22.84 Aligned_cols=61 Identities=26% Similarity=0.413 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHh
Q 033797 36 EKEKLMELLRERLVECGWKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLA 107 (111)
Q Consensus 36 e~erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~ 107 (111)
+|--|-.+|+.+|-+ |+|.+.+...+....++.+.+...+..|+ .-.|. .+-+.|+++-|.
T Consensus 27 Dy~PLlALL~r~Ltd----eev~~Va~~L~~~~~i~~~dI~~~I~~vt----~~~Ps---~eDI~RV~arLa 87 (103)
T 2kvc_A 27 DSFAVLALLCRRLSH----DEVKAVANELMRLGDFDQIDIGVVITHFT----DELPS---PEDVERVRARLA 87 (103)
T ss_dssp HHHHHHHHHTTTSCH----HHHHHHHHHHHHHTSSCSSCHHHHHHSCC----SSCSC---HHHHHHHHHHHG
T ss_pred chHHHHHHHhccCCH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHh----ccCCC---HHHHHHHHHHHH
Confidence 566788899999987 89999999988766555666666666665 33332 234556665553
No 125
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=34.39 E-value=47 Score=25.77 Aligned_cols=56 Identities=13% Similarity=0.142 Sum_probs=35.9
Q ss_pred hcChHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHh
Q 033797 50 ECGWKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLA 107 (111)
Q Consensus 50 EcGW~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~ 107 (111)
+..|. .++....++.... ....+|++|+..|.-......++.+...+...|.++|.
T Consensus 14 ~~~W~-~L~~ai~~I~~~~-~~~~s~e~LY~~vy~lc~~k~g~~LY~~l~~~~~~~l~ 69 (364)
T 4eoz_B 14 NSIWD-LLKNAIQEIQRKN-NSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLI 69 (364)
T ss_dssp HHHHH-HHHHHHHHHHTTC-GGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHH
Confidence 44563 5555566555433 34578888888887777666677666666666666654
No 126
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=33.56 E-value=62 Score=22.07 Aligned_cols=27 Identities=7% Similarity=0.169 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
+.|-+.+.+.+.++|.+.+|+++|.++
T Consensus 17 ~~Il~AA~~lf~~~G~~~~s~~~IA~~ 43 (208)
T 3v6g_A 17 QAIVEAAERVIARQGLGGLSHRRVAAE 43 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 344455566666666666666666554
No 127
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.93 E-value=44 Score=22.39 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 57 MKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 57 Vr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
|-+.+.+.+.++|.+.+|+++|.+
T Consensus 14 Il~AA~~lf~~~G~~~~s~~~IA~ 37 (203)
T 2np5_A 14 LAAALFDVAAESGLEGASVREVAK 37 (203)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhChhhccHHHHHH
Confidence 334444444444444444444443
No 128
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=32.87 E-value=39 Score=22.87 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHhCCCCC-------CHHHHHHhhchhh
Q 033797 37 KEKLMELLRERLVECGWKD-EMKALCRAYIKKKGTNNV-------TVDDLVHVITPKG 86 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~D-eVr~~~re~i~~~g~~~v-------t~~~L~~~I~P~A 86 (111)
+++|-+--.+-+.+.|+.. .|++.|+. -|+..- |=++|+..+.-..
T Consensus 24 r~~Il~AA~~lf~e~G~~~~s~~~IA~~----AGVsk~tlY~~F~sKe~L~~a~~~~~ 77 (207)
T 3bjb_A 24 HVRMLEAAIELATEKELARVQMHEVAKR----AGVAIGTLYRYFPSKTHLFVAVMVDQ 77 (207)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHH----HTCCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHH----hCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence 5667777778888888875 77777764 343322 4466666665443
No 129
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=32.74 E-value=19 Score=23.30 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWKD-EMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~D-eVr~~~re 63 (111)
+++|-+--..-+.+.|+.. .|++.|++
T Consensus 10 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~ 37 (195)
T 3pas_A 10 RIAFLEATVREVADHGFSATSVGKIAKA 37 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcChHhcCHHHHHHH
Confidence 4555555566666667653 45555543
No 130
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=32.60 E-value=24 Score=20.71 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=25.6
Q ss_pred CCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHhhh
Q 033797 71 NNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLASA 109 (111)
Q Consensus 71 ~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~~ 109 (111)
...++.+|=+++.- |.+=..-.|.+|+.|+.+|++..
T Consensus 11 ~klkV~eLK~eLk~--RgL~~~G~Ka~Li~RL~~~~~~e 47 (50)
T 1zrj_A 11 RRLKVNELREELQR--RGLDTRGLKAELAERLQAALSGP 47 (50)
T ss_dssp GGSCHHHHHHHHHH--TTCCCCSCHHHHHHHHHHHHCCC
T ss_pred HHCcHHHHHHHHHH--cCCCCCCcHHHHHHHHHHHHhcc
Confidence 34567777776653 33434556999999999998763
No 131
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=32.55 E-value=39 Score=18.93 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=20.7
Q ss_pred CCCCCchhhhccchhhHHHHHHHHH
Q 033797 7 RPPTPDAVEDQEKEPTLQEIINIKM 31 (111)
Q Consensus 7 ~~~~~~~~~~~~~~~~lk~~I~~~L 31 (111)
.|..|+.++....-....+++++++
T Consensus 4 kP~~Pg~~a~pEela~Y~~~Lr~Yi 28 (37)
T 1f8p_A 4 KPDNPGEDAPAEDLARYYSALRHYI 28 (37)
T ss_dssp CCCCCCSSCTTTTHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 5667899888888888888888875
No 132
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=32.46 E-value=63 Score=22.42 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhcChH-HHHHHHH
Q 033797 38 EKLMELLRERLVECGWK-DEMKALC 61 (111)
Q Consensus 38 erLk~lL~~rL~EcGW~-DeVr~~~ 61 (111)
++|-+--..-+.+.|+. -.++++|
T Consensus 26 ~~Il~aA~~lf~~~G~~~~s~~~IA 50 (231)
T 2zcx_A 26 EAILDAARELGTERGIREITLTDIA 50 (231)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHH
T ss_pred HHHHHHHHHHHHhCCcccCCHHHHH
Confidence 34444444555555553 2344444
No 133
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=32.41 E-value=61 Score=22.96 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWKD-EMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~D-eVr~~~re 63 (111)
+++|-+--..-+.+.|+.. .++++|++
T Consensus 18 r~~Il~aA~~l~~~~G~~~~s~~~IA~~ 45 (237)
T 2hxo_A 18 RERIVGAAVELLDTVGERGLTFRALAER 45 (237)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 4445555555555556554 45555543
No 134
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=32.33 E-value=65 Score=22.19 Aligned_cols=25 Identities=8% Similarity=0.157 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVH 80 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~ 80 (111)
.|-+.+.+.+.++|.+.+|+++|.+
T Consensus 11 ~Il~AA~~lF~e~G~~~ts~~~IA~ 35 (235)
T 2fbq_A 11 RILDAAEQLFAEKGFAETSLRLITS 35 (235)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCccccCHHHHHH
Confidence 3334444444555555555555443
No 135
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=32.05 E-value=19 Score=23.67 Aligned_cols=27 Identities=11% Similarity=0.332 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re 63 (111)
+++|-+--..-+.+.|+. -.|+++|++
T Consensus 22 r~~Il~aA~~l~~~~G~~~~t~~~Ia~~ 49 (203)
T 3mnl_A 22 RKRILDATMAIASKGGYEAVQMRAVADR 49 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 455566666677777876 366666654
No 136
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=31.68 E-value=47 Score=22.23 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhcChH
Q 033797 40 LMELLRERLVECGWK 54 (111)
Q Consensus 40 Lk~lL~~rL~EcGW~ 54 (111)
|-+.-..-+.+.|+.
T Consensus 17 Il~aA~~lf~~~G~~ 31 (200)
T 2hyj_A 17 ILGRAAEIASEEGLD 31 (200)
T ss_dssp HHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHcCcc
Confidence 333334444444543
No 137
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=31.63 E-value=1.2e+02 Score=20.48 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=41.7
Q ss_pred cchHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCCC-CCCHHHHHHhhchhhhccCCHH
Q 033797 34 SGEKEKLMELLRERLVECGWKDEMKALCRAYIKKKGTN-NVTVDDLVHVITPKGRASIPDS 93 (111)
Q Consensus 34 SGe~erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~~-~vt~~~L~~~I~P~Ar~~VP~~ 93 (111)
..+|--|-.+|+.+|-+ |+|++.+...+.....+ .++-.++-..|+-....+=.++
T Consensus 30 ~~Dy~PLlALL~R~Ltd----dev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~e 86 (107)
T 3ol3_A 30 PKDYFALLALLKRSLTE----DEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAE 86 (107)
T ss_dssp GGGHHHHHHHHTCCCCH----HHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHH
T ss_pred CCccHHHHHHhcccCCH----HHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHH
Confidence 35788899999999987 89999998888765422 3788888777776665554443
No 138
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=31.57 E-value=63 Score=23.25 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWKD-EMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~D-eVr~~~re 63 (111)
+++|.+--.+-+.+.|+.. .|+++|++
T Consensus 43 r~~Il~AA~~lf~e~G~~~~S~~~IA~~ 70 (273)
T 3c07_A 43 RALILETAMRLFQERGYDRTTMRAIAQE 70 (273)
T ss_dssp HHHHHHHHHHHHHHTCSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCHHHHHHH
Confidence 4555555566666666653 55555543
No 139
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=31.36 E-value=1.6e+02 Score=23.15 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCh-----HHHHHHHHHHHHHH-----hCCCCCCHHHHHHhhchhhhccCCHHHHHH
Q 033797 42 ELLRERLVECGW-----KDEMKALCRAYIKK-----KGTNNVTVDDLVHVITPKGRASIPDSIKTE 97 (111)
Q Consensus 42 ~lL~~rL~EcGW-----~DeVr~~~re~i~~-----~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~E 97 (111)
..++.+|.+.|| .+++++.+++.+.+ ......+.+++++.|-. -.|..++.+
T Consensus 297 ~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~----~~~~~l~~q 358 (368)
T 1w85_A 297 VRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFE----ELPFNLKEQ 358 (368)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHTSCS----SCCHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccC----CCChHHHHH
Confidence 456777777775 34555555555533 34567899999999984 356655544
No 140
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.11 E-value=66 Score=21.29 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=35.0
Q ss_pred HHHHhcChH-HHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 033797 46 ERLVECGWK-DEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTEL 98 (111)
Q Consensus 46 ~rL~EcGW~-DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~El 98 (111)
+.|.+.|.+ ..-|...-+.|.+.+...+|.++|++.+..+.-.+=+..|++-|
T Consensus 7 ~~l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L 60 (136)
T 1mzb_A 7 SELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVL 60 (136)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 446666764 56677777777654324799999999998765444445555543
No 141
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=30.96 E-value=66 Score=21.32 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCCCCC-------CHHHHHHhhch
Q 033797 37 KEKLMELLRERLVECGWKDEMKALCRAYIKKKGTNNV-------TVDDLVHVITP 84 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~~~v-------t~~~L~~~I~P 84 (111)
+++|-+.-.+-+.+.|+.-.++++|+ +-|+..- |-++|+..+.-
T Consensus 15 r~~Il~aA~~lf~~~G~~~t~~~IA~----~agvs~~tlY~~F~sK~~L~~~~~~ 65 (196)
T 2qwt_A 15 RARVLEVAYDTFAAEGLGVPMDEIAR----RAGVGAGTVYRHFPTKQALVVAVAE 65 (196)
T ss_dssp HHHHHHHHHHHHHHTCTTSCHHHHHH----HTTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHH----HhCCCHHHHHHHCCCHHHHHHHHHH
Confidence 45666777777888887334444443 4453222 44555555543
No 142
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.66 E-value=1.2e+02 Score=23.34 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=43.3
Q ss_pred HhcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCC-----CCCCHHHHHHhhch
Q 033797 32 IESGEKEKLMELLRERLVECGWKDEMKALCRAYIKKKGT-----NNVTVDDLVHVITP 84 (111)
Q Consensus 32 veSGe~erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~-----~~vt~~~L~~~I~P 84 (111)
+++|+++.-.+.|..-.-+++=...+|..--.+|++++. .|.||+.+.+.|.-
T Consensus 125 iek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lqnFSy~~~~~ki~~ 182 (235)
T 3bu8_A 125 IKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNFSYETFQQKMLR 182 (235)
T ss_dssp HHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHHTCCHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHHhccHHHHHHHHHH
Confidence 789999999999999899998999999999999999973 34566666555543
No 143
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=29.62 E-value=51 Score=21.69 Aligned_cols=45 Identities=9% Similarity=0.281 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCCCCC-------CHHHHHHhhchh
Q 033797 37 KEKLMELLRERLVECGWKDEMKALCRAYIKKKGTNNV-------TVDDLVHVITPK 85 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~~~v-------t~~~L~~~I~P~ 85 (111)
+++|-+.-..-+.+.|+.-.++++| ++-|+..- |-++|+..+.-.
T Consensus 18 r~~Il~aA~~lf~~~G~~~s~~~Ia----~~agvs~~t~Y~~F~sK~~L~~~~~~~ 69 (199)
T 2rek_A 18 YDRIIEAAAAEVARHGADASLEEIA----RRAGVGSATLHRHFPSRWGLLQAVFQE 69 (199)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHH----HHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHH----HHhCCchHHHHHHCCCHHHHHHHHHHH
Confidence 5666777777888889833445444 44454322 456666665543
No 144
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=29.40 E-value=52 Score=22.29 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=7.1
Q ss_pred HHHHHHHHH-HHhcCh
Q 033797 39 KLMELLRER-LVECGW 53 (111)
Q Consensus 39 rLk~lL~~r-L~EcGW 53 (111)
+|.+-...- |.+-|.
T Consensus 23 ~I~~Aa~~lF~~~~g~ 38 (185)
T 3o60_A 23 KLYTVLERFYVEDRTF 38 (185)
T ss_dssp HHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHhcCCc
Confidence 344444444 455555
No 145
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=29.38 E-value=50 Score=22.61 Aligned_cols=26 Identities=4% Similarity=0.192 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
+++|-+.-.+-+.+.|+. -.|++.|+
T Consensus 41 r~~Il~AA~~lf~e~G~~~~tv~~IA~ 67 (214)
T 2guh_A 41 RSLIVDAAGRAFATRPYREITLKDIAE 67 (214)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcChhhcCHHHHHH
Confidence 344555555566666665 34555554
No 146
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=29.23 E-value=53 Score=22.81 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHhCCCC-------CCHHHHHHhhch
Q 033797 35 GEKEKLMELLRERLVECGWK-DEMKALCRAYIKKKGTNN-------VTVDDLVHVITP 84 (111)
Q Consensus 35 Ge~erLk~lL~~rL~EcGW~-DeVr~~~re~i~~~g~~~-------vt~~~L~~~I~P 84 (111)
-.+++|-+--..-+.+.|+. -.++++|++. |+.. -|-++|+..+.-
T Consensus 25 ~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~a----Gvs~~tlY~~F~~K~~L~~a~~~ 78 (211)
T 3fiw_A 25 MNRETVITEALDLLDEVGLDGVSTRRLAKRL----GVEQPSLYWYFRTKRDLLTAMAQ 78 (211)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHH----TSCTHHHHTTCSSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCcccCCHHHHHHHh----CCChhHHHHHcCCHHHHHHHHHH
Confidence 34667777777788888887 4777777653 4322 255666665543
No 147
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=29.19 E-value=68 Score=22.91 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
+++|-+--..-+.+.|+. -.|+++|+
T Consensus 21 r~~Il~AA~~l~~e~G~~~~S~~~IA~ 47 (243)
T 2g7l_A 21 RRWIVDTAVALMRAEGLEKVTMRRLAQ 47 (243)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhcCHHHHHH
Confidence 444444445555555553 23444443
No 148
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=29.09 E-value=23 Score=23.16 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHhcChH-HHHHHHHHH
Q 033797 36 EKEKLMELLRERLVECGWK-DEMKALCRA 63 (111)
Q Consensus 36 e~erLk~lL~~rL~EcGW~-DeVr~~~re 63 (111)
-+++|-+--..-+.+.|+. -.|++.|++
T Consensus 15 ~r~~Il~aA~~l~~~~G~~~~t~~~IA~~ 43 (191)
T 4aci_A 15 SRQEILEGARRCFAEHGYEGATVRRLEEA 43 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 3456666667777777876 356666654
No 149
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=29.02 E-value=31 Score=23.69 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWKD-EMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~D-eVr~~~re 63 (111)
+++|.+.-..-+.+.|+.. .|+++|++
T Consensus 32 r~~Il~aA~~lf~~~G~~~~t~~~IA~~ 59 (230)
T 2iai_A 32 PETLLSVAVQVFIERGYDGTSMEHLSKA 59 (230)
T ss_dssp CSCHHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccccCHHHHHHH
Confidence 4556666666777777753 56666654
No 150
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=28.71 E-value=25 Score=23.03 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWKD-EMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~D-eVr~~~re 63 (111)
+++|-+--..-+.+.|+.. .+++.|++
T Consensus 13 r~~Il~aA~~lf~~~G~~~~ti~~IA~~ 40 (204)
T 3eup_A 13 RQFIIESTAPVFNVKGLAGTSLTDLTEA 40 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 4556666666777778765 66666654
No 151
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=28.64 E-value=55 Score=22.68 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
+.|-+.+.+.+.++|.+.+|+.+|.++
T Consensus 5 ~~Il~aA~~l~~~~G~~~~s~~~IA~~ 31 (209)
T 3bqy_A 5 ARTVQTALDLLNESGLDTLTMRRLAQA 31 (209)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccCCHHHHHHH
Confidence 334444555555555555555554443
No 152
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=28.37 E-value=25 Score=22.90 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHhCCCCC-------CHHHHHHhhchhh
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRAYIKKKGTNNV-------TVDDLVHVITPKG 86 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re~i~~~g~~~v-------t~~~L~~~I~P~A 86 (111)
+++|-+.-..-+.+.|+. -.+++.|++ -|+..- |-++|+..+.-..
T Consensus 9 r~~Il~aa~~l~~~~G~~~~t~~~IA~~----agvs~~tlY~~F~sK~~L~~~~~~~~ 62 (186)
T 2jj7_A 9 MENILKAAKKKFGERGYEGTSIQEIAKE----AKVNVAMASYYFNGKENLYYEVFKKY 62 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHH----HTSCHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCHHHHHHH----hCCChhhhhhhcCCHHHHHHHHHHHH
Confidence 345555666677777776 455555544 343222 4566666665544
No 153
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=28.36 E-value=24 Score=23.09 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhcChH-HHHHHHH
Q 033797 39 KLMELLRERLVECGWK-DEMKALC 61 (111)
Q Consensus 39 rLk~lL~~rL~EcGW~-DeVr~~~ 61 (111)
+|-+--..-+.+.|+. -.|++.|
T Consensus 7 ~Il~aa~~l~~~~G~~~~ti~~IA 30 (189)
T 3geu_A 7 KIIDNAITLFSEKGYDGTTLDDIA 30 (189)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHH
Confidence 3444444445555554 2344444
No 154
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=28.16 E-value=78 Score=23.09 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWKD-EMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~D-eVr~~~re 63 (111)
+++|-+--..-+.+.|+.. .++++|++
T Consensus 29 r~~Il~AA~~L~~e~G~~~~Smr~IA~~ 56 (267)
T 2y2z_A 29 RDQIVRAAVKVADTEGVEAASMRRVAAE 56 (267)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 3444444455555566543 35555543
No 155
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=27.96 E-value=26 Score=23.06 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
+++|-+--..-+.+-|+. -.|++.|+
T Consensus 16 r~~Il~aa~~l~~~~G~~~~t~~~Ia~ 42 (215)
T 3e7q_A 16 KALLIEATLACLKRHGFQGASVRKICA 42 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHH
Confidence 344555555666666662 23444443
No 156
>3h1s_A Superoxide dismutase; SOBD, csgid, oxidoreductase, structura genomics; 1.90A {Francisella tularensis subsp}
Probab=27.80 E-value=64 Score=23.66 Aligned_cols=33 Identities=18% Similarity=0.413 Sum_probs=26.3
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHHh---cChH
Q 033797 19 KEPTLQEIINIKMIESGEKEKLMELLRERLVE---CGWK 54 (111)
Q Consensus 19 ~~~~lk~~I~~~LveSGe~erLk~lL~~rL~E---cGW~ 54 (111)
....|.++|++.+ |.++.+++.+...... |||.
T Consensus 91 P~g~L~~aI~~~F---GS~d~fk~~f~~aa~~~fGSGW~ 126 (195)
T 3h1s_A 91 ASSQLKAALIETF---GSVENFKEQFSKAAIATFGSGWA 126 (195)
T ss_dssp CCHHHHHHHHHHH---SSHHHHHHHHHHHHHHCCSSEEE
T ss_pred CCHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCeEE
Confidence 3457999999876 9999999999876654 8884
No 157
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=27.23 E-value=1.6e+02 Score=20.46 Aligned_cols=43 Identities=21% Similarity=0.053 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhcc-h-HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 033797 22 TLQEIINIKMIESG-E-KEKLMELLRERLVECGWKDEMKALCRAYIK 66 (111)
Q Consensus 22 ~lk~~I~~~LveSG-e-~erLk~lL~~rL~EcGW~DeVr~~~re~i~ 66 (111)
.+-+.|-+....|. + ...|-+.|-.||.+.||. ++-.|-.+|+
T Consensus 30 ylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~--vk~KaL~lL~ 74 (140)
T 1vdy_A 30 YKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPI--VKQKALRLIK 74 (140)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcc--eeehHHHHHH
Confidence 56678888888873 4 489999999999999997 5555655553
No 158
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=26.73 E-value=83 Score=21.62 Aligned_cols=26 Identities=8% Similarity=0.312 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
+++|.+-...-+.+.||. -.|++.|+
T Consensus 9 r~~Il~aA~~l~~~~G~~~~tv~~Ia~ 35 (213)
T 3ni7_A 9 RDAIVDTAVELAAHTSWEAVRLYDIAA 35 (213)
T ss_dssp HHHHHHHHHHHHHHSCSTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccccCHHHHHH
Confidence 344555555566666664 23444443
No 159
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=26.52 E-value=64 Score=21.98 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHhCCCCC-------CHHHHHHhhchhhh
Q 033797 35 GEKEKLMELLRERLVECGWK-DEMKALCRAYIKKKGTNNV-------TVDDLVHVITPKGR 87 (111)
Q Consensus 35 Ge~erLk~lL~~rL~EcGW~-DeVr~~~re~i~~~g~~~v-------t~~~L~~~I~P~Ar 87 (111)
.-+++|-+--..-+.+.|+. -.+++.|+.. |+..- |=++|+..+.-...
T Consensus 35 ~~r~~Il~AA~~lf~~~G~~~~s~~~IA~~A----Gvs~~tlY~~F~sKe~L~~a~~~~~~ 91 (237)
T 3kkd_A 35 QRRQAILDAAMRLIVRDGVRAVRHRAVAAEA----QVPLSATTYYFKDIDDLITDTFALFV 91 (237)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHH----TSCTTTC-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChhhcCHHHHHHHh----CCChhHHHHHcCCHHHHHHHHHHHHH
Confidence 34666777777778888884 3566666543 43222 45666666654433
No 160
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=26.49 E-value=43 Score=23.91 Aligned_cols=41 Identities=20% Similarity=0.095 Sum_probs=24.9
Q ss_pred HHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHhh
Q 033797 66 KKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLAS 108 (111)
Q Consensus 66 ~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~ 108 (111)
........|+.+|=+.+.-. .+=...-|.+|+.+|.+||+.
T Consensus 57 ~~g~L~kltV~eLK~~l~~~--gL~~~GkKadLI~Ri~~~l~~ 97 (151)
T 1jjr_A 57 SKGTLGKFTVPMLKEACRAY--GLKSGLKKQELLEALTKHFQD 97 (151)
T ss_dssp HHTCTTSSCHHHHHHHHHHH--TCCCCSSSHHHHHHHHHTTCC
T ss_pred HcCcHHhccHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhh
Confidence 33445666777776665544 333445677777777777653
No 161
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.47 E-value=65 Score=21.73 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
++|=+.+.+.+.++|.+.+|+++|.++
T Consensus 12 ~~Il~aA~~lf~~~G~~~~s~~~IA~~ 38 (209)
T 2gfn_A 12 RALADAVLALIAREGISAVTTRAVAEE 38 (209)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 344445555555666666666665544
No 162
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=26.45 E-value=60 Score=22.50 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhc-ChH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVEC-GWK-DEMKALCR 62 (111)
Q Consensus 37 ~erLk~lL~~rL~Ec-GW~-DeVr~~~r 62 (111)
+++|-+--..-+.+. |+. -.++++|+
T Consensus 7 r~~Il~aA~~l~~~~~G~~~~s~~~IA~ 34 (220)
T 1z0x_A 7 KDTIIAAAFSLLEKSPTLEQLSMRKVAK 34 (220)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 445555555555555 553 24444444
No 163
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=26.01 E-value=28 Score=22.62 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWKD-EMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~D-eVr~~~re 63 (111)
+++|-+-...-+.+.|+.. .|++.|+.
T Consensus 16 r~~Il~aa~~lf~~~G~~~~ti~~Ia~~ 43 (156)
T 3ljl_A 16 IQKIMDAVVDQLLRLGYDKMSYTTLSQQ 43 (156)
T ss_dssp HHHHHHHHHHHHHHTHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhcCHHHHHHH
Confidence 4566666777788888864 67766654
No 164
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=25.75 E-value=66 Score=21.44 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCCCCC-------CHHHHHHhhch
Q 033797 37 KEKLMELLRERLVECGWKDEMKALCRAYIKKKGTNNV-------TVDDLVHVITP 84 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~~~v-------t~~~L~~~I~P 84 (111)
+++|-+--.+-+.+.|+.-.|++.|+. -|+..- |-++|+..+.-
T Consensus 14 r~~Il~aA~~lf~~~G~~~s~~~IA~~----agvs~~tiY~~F~sK~~L~~~~~~ 64 (224)
T 1t33_A 14 KSQLIAAALAQFGEYGLHATTRDIAAL----AGQNIAAITYYFGSKEDLYLACAQ 64 (224)
T ss_dssp HHHHHHHHHHHHHHHGGGSCHHHHHHH----HTSCHHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccHHHHHHH----hCCCHHHHHHhcCCHHHHHHHHHH
Confidence 456666677778888887555555543 454322 44666665543
No 165
>3qvn_A Manganese-containing superoxide dismutase; Mn superoxide dismutase, oxidoreductase; 2.60A {Candida albicans}
Probab=25.65 E-value=50 Score=24.42 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhcchHHHHHHHHHHHHH---hcChH
Q 033797 21 PTLQEIINIKMIESGEKEKLMELLRERLV---ECGWK 54 (111)
Q Consensus 21 ~~lk~~I~~~LveSGe~erLk~lL~~rL~---EcGW~ 54 (111)
..|.++|++.+ |.+|.+++.+..... -|||.
T Consensus 102 ~~L~~aI~~~F---GS~d~fk~~F~~aa~~~fGSGW~ 135 (206)
T 3qvn_A 102 SALGKQIVAQY---GSVSNLIDITNSKLAGIQGSGWA 135 (206)
T ss_dssp SHHHHHHHHHT---SSHHHHHHHHHHHHHHCCSSEEE
T ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHhhcCCCeEE
Confidence 48999999876 999999999987644 47883
No 166
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=25.52 E-value=84 Score=23.06 Aligned_cols=68 Identities=19% Similarity=0.359 Sum_probs=45.8
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHH
Q 033797 19 KEPTLQEIINIKMIESGEKEKLMELLRERLVECGWKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKT 96 (111)
Q Consensus 19 ~~~~lk~~I~~~LveSGe~erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~ 96 (111)
.+..|...|.+.|..-.+-..|--...+-|..|||.=++ +++ .+ ...+.|+|=..|. .-..||+++|+
T Consensus 90 ~d~~L~~kl~rqLq~l~ds~qiL~~~~~~Ld~~~Wsl~~--La~-----~~-~~~~~DdLDrfVm--vaR~vPdD~kq 157 (176)
T 2l81_A 90 PELILHNKMKRELQRVEDSHQILSQTSHDLNECSWSLNI--LAI-----NK-PQNKCDDLDRFVM--VAKTVPDDAKQ 157 (176)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH--HTT-----CC-SSCTTCHHHHHHH--HHTTHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcHHH--Hcc-----CC-CCCCcchHHHHHH--hhccCCHHHHH
Confidence 566788888888888888888888888999999996443 332 22 2233444444332 23679999975
No 167
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=25.34 E-value=66 Score=22.96 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
+.|-+.+.+.+.++|.+.+|+.+|.++
T Consensus 9 ~~Il~AA~~l~~~~G~~~~S~r~IA~~ 35 (234)
T 2opt_A 9 DRIVVTALGILDAEGLDALSMRRLAQE 35 (234)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCHHHHHHH
Confidence 344444555555555555555554443
No 168
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=25.28 E-value=54 Score=21.55 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH-HhcChH-HHHHHHHH
Q 033797 37 KEKLMELLRERL-VECGWK-DEMKALCR 62 (111)
Q Consensus 37 ~erLk~lL~~rL-~EcGW~-DeVr~~~r 62 (111)
+++|-+.-.+.| .+.|+. -.+++.|+
T Consensus 26 r~~Il~aA~~~lf~~~G~~~~t~~~Ia~ 53 (212)
T 3nxc_A 26 REEILQSLALMLESSDGSQRITTAKLAA 53 (212)
T ss_dssp HHHHHHHHHHHHHC------CCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChhhcCHHHHHH
Confidence 344444433333 455653 23444443
No 169
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=24.81 E-value=80 Score=23.11 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHhhchhhhc------cCCHHHHHHHHHHHHHHHh
Q 033797 70 TNNVTVDDLVHVITPKGRA------SIPDSIKTELLLRIRAFLA 107 (111)
Q Consensus 70 ~~~vt~~~L~~~I~P~Ar~------~VP~~VK~Ell~~Ir~fL~ 107 (111)
.+++++++|+..+...-.. .-+++++++|+..|+....
T Consensus 81 ~~~~~l~eLi~~~~~~i~~~~~~~~~~~~e~k~~I~~~i~~~~~ 124 (192)
T 1zx4_A 81 NKNLEFDQLIQNISPEINDILSINEMAEDEVKNKILRLITKEAS 124 (192)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHH
Confidence 3568899999998877433 5788999999999998874
No 170
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=24.53 E-value=57 Score=22.00 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 38 EKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 38 erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
++|-+-=..-+.+.|+. -.+++.|+
T Consensus 27 ~~Il~aA~~lf~e~G~~~~s~~~IA~ 52 (214)
T 2oer_A 27 ASILEAAVQVLASEGAQRFTTARVAE 52 (214)
T ss_dssp HHHHHHHHHC------CCCCHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccccHHHHHH
Confidence 33444444445555554 24444443
No 171
>4ffk_A Superoxide dismutase; oxidoreductase, superoxide acceptor; 1.76A {Acidilobus saccharovorans}
Probab=24.01 E-value=86 Score=23.57 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=26.8
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHHh---cChH
Q 033797 19 KEPTLQEIINIKMIESGEKEKLMELLRERLVE---CGWK 54 (111)
Q Consensus 19 ~~~~lk~~I~~~LveSGe~erLk~lL~~rL~E---cGW~ 54 (111)
....|.++|++.+ |..|.+++.+.....- |||.
T Consensus 109 P~g~L~~aI~~~F---GS~d~fk~~F~~aa~~~fGSGW~ 144 (223)
T 4ffk_A 109 PGGAIGDAINKFF---GSFDKFKKLFGDAAKNVEGVGWA 144 (223)
T ss_dssp CCHHHHHHHHHHH---SSHHHHHHHHHHHHHTCSSSEEE
T ss_pred CCHHHHHHHHHHh---CCHHHHHHHHHHHHhhCCCCeEE
Confidence 3468999999876 9999999999877654 7883
No 172
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=23.96 E-value=52 Score=22.89 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~re 63 (111)
+++|-+--.+-+.+.|+. -.++++|++
T Consensus 45 r~~Il~AA~~lf~~~G~~~~t~~~IA~~ 72 (255)
T 3g1o_A 45 ELAILATAENLLEDRPLADISVDDLAKG 72 (255)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCcHHHHHHH
Confidence 456777777888888884 467777754
No 173
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=23.48 E-value=63 Score=23.00 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhcChHH-HHHHHH
Q 033797 38 EKLMELLRERLVECGWKD-EMKALC 61 (111)
Q Consensus 38 erLk~lL~~rL~EcGW~D-eVr~~~ 61 (111)
++|-+--..-+.+.|+.. .++++|
T Consensus 32 ~~Il~aA~~l~~~~G~~~~s~~~IA 56 (241)
T 2hxi_A 32 EQILDAAAELLLAGDAETFSVRKLA 56 (241)
T ss_dssp HHHHHHHHHHHSSSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHH
Confidence 344444444445555432 344444
No 174
>1b06_A Protein (superoxide dismutase); oxidoreductase; 2.20A {Sulfolobus acidocaldarius} SCOP: a.2.11.1 d.44.1.1 PDB: 1wb8_A* 1wb7_A
Probab=22.44 E-value=1e+02 Score=22.78 Aligned_cols=33 Identities=18% Similarity=0.479 Sum_probs=27.0
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHH---hcChH
Q 033797 19 KEPTLQEIINIKMIESGEKEKLMELLRERLV---ECGWK 54 (111)
Q Consensus 19 ~~~~lk~~I~~~LveSGe~erLk~lL~~rL~---EcGW~ 54 (111)
....|.++|++.+ |..|.+++.+..... -|||.
T Consensus 101 P~g~L~~aI~~~F---GS~d~fk~~F~~aa~~~fGSGW~ 136 (210)
T 1b06_A 101 PGGALADLIDKQY---GSFDRFKQVFSESANSLPGSGWT 136 (210)
T ss_dssp CCHHHHHHHHHHH---SSHHHHHHHHHHHHHHCCSSEEE
T ss_pred CCHHHHHHHHHHh---CCHHHHHHHHHHHHhhCCCCeEE
Confidence 4567999999887 999999999987766 48883
No 175
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=22.15 E-value=36 Score=23.25 Aligned_cols=29 Identities=7% Similarity=0.336 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHhcChH-HHHHHHHHH
Q 033797 35 GEKEKLMELLRERLVECGWK-DEMKALCRA 63 (111)
Q Consensus 35 Ge~erLk~lL~~rL~EcGW~-DeVr~~~re 63 (111)
..+++|-+.-.+-+.+.|+. -.|+++|++
T Consensus 30 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~ 59 (226)
T 2pz9_A 30 STRQRIVAAAKEEFARHGIAGARVDRIAKQ 59 (226)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCcHHHHHHH
Confidence 34566777777777888875 355555543
No 176
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=21.95 E-value=2e+02 Score=19.75 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=21.5
Q ss_pred CHHHHHHhhchhhhccCCHHHHHHHHHHHHHH
Q 033797 74 TVDDLVHVITPKGRASIPDSIKTELLLRIRAF 105 (111)
Q Consensus 74 t~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~f 105 (111)
++-+.+..+.-....+|+++|++-|+.-|.-|
T Consensus 73 ~l~~~ir~~a~~~~~s~~~ei~~r~~~~~~~~ 104 (120)
T 1u9p_A 73 EVLDLVRKVAEENGRSVNSEIYQRVMESFKKE 104 (120)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 34455555555566788888888887777665
No 177
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.44 E-value=40 Score=22.80 Aligned_cols=26 Identities=4% Similarity=0.236 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
+++|-+--.+-+.+.|+. -.|+++|+
T Consensus 5 r~~Il~aA~~lf~~~G~~~~s~~~IA~ 31 (208)
T 2g3b_A 5 RDAILKASATAIAQRGIRGLRVNDVAE 31 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHH
Confidence 344555555556666664 24555444
No 178
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=21.33 E-value=41 Score=22.08 Aligned_cols=27 Identities=15% Similarity=0.382 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHH
Q 033797 37 KEKLMELLRERLVECGWKD-EMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~EcGW~D-eVr~~~re 63 (111)
+++|-+--.+-+.+.|+.. .|++.|++
T Consensus 10 r~~Il~AA~~l~~~~G~~~~t~~~IA~~ 37 (195)
T 3frq_A 10 DDEVLEAATVVLKRCGPIEFTLSGVAKE 37 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccCCHHHHHHH
Confidence 5666666667777777743 45555543
No 179
>3tqj_A Superoxide dismutase [FE]; oxidoreductase; 2.00A {Coxiella burnetii}
Probab=21.23 E-value=95 Score=23.11 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=26.6
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHHh---cChH
Q 033797 19 KEPTLQEIINIKMIESGEKEKLMELLRERLVE---CGWK 54 (111)
Q Consensus 19 ~~~~lk~~I~~~LveSGe~erLk~lL~~rL~E---cGW~ 54 (111)
....|.++|++.+ |..|.+++.+...... |||.
T Consensus 89 P~g~L~~aI~~~F---GS~d~fk~~F~~aa~~~fGSGW~ 124 (210)
T 3tqj_A 89 PSGELASAIDKTF---GSLEKFKALFTDSANNHFGSGWA 124 (210)
T ss_dssp CCHHHHHHHHHHH---SSHHHHHHHHHHHHHHCCSSEEE
T ss_pred CCHHHHHHHHHHh---CCHHHHHHHHHHHHhhCCCCeEE
Confidence 3457999999876 9999999999876655 8884
No 180
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=20.76 E-value=47 Score=22.20 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHH-hcChH-HHHHHHHHH
Q 033797 37 KEKLMELLRERLV-ECGWK-DEMKALCRA 63 (111)
Q Consensus 37 ~erLk~lL~~rL~-EcGW~-DeVr~~~re 63 (111)
+++|.+-...-+. +.|+. -.|++.|++
T Consensus 13 r~~Il~aa~~l~~~~~G~~~~ti~~Ia~~ 41 (220)
T 3lsj_A 13 RHALMSAARHLMESGRGFGSLSLREVTRA 41 (220)
T ss_dssp HHHHHHHHHHHTTTSCCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCCHHHHHHH
Confidence 3455555556666 66663 345555543
No 181
>1ma1_A Superoxide dismutase; metal specificity, azide inhibition, peroxide inactivation, oxidoreductase; 2.60A {Methanothermobacterthermautotrophicus} SCOP: a.2.11.1 d.44.1.1
Probab=20.66 E-value=1.1e+02 Score=22.47 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=26.6
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHH---hcCh
Q 033797 19 KEPTLQEIINIKMIESGEKEKLMELLRERLV---ECGW 53 (111)
Q Consensus 19 ~~~~lk~~I~~~LveSGe~erLk~lL~~rL~---EcGW 53 (111)
....|.++|++.+ |..+.+++.+..... -|||
T Consensus 98 P~g~L~~aI~~~F---GS~d~fk~~F~~aa~~~fGSGW 132 (205)
T 1ma1_A 98 PSGKLAEYIEKDF---GSFERFRKEFSQAAISAEGSGW 132 (205)
T ss_dssp CCHHHHHHHHHHH---SSHHHHHHHHHHHHHTCSSSEE
T ss_pred CCHHHHHHHHHhh---CCHHHHHHHHHHHHhhCCCCeE
Confidence 4567999998887 999999999988766 4888
No 182
>3lio_A Iron superoxide dismutase; cold adaptation, flexibility, thermal stability, psychrophilic protein, metal-binding, oxidoreduc; HET: TRE; 1.50A {Pseudoalteromonas haloplanktis} PDB: 3lj9_A* 3ljf_A* 3sdp_A
Probab=20.64 E-value=89 Score=22.83 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=26.5
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHHh---cChH
Q 033797 19 KEPTLQEIINIKMIESGEKEKLMELLRERLVE---CGWK 54 (111)
Q Consensus 19 ~~~~lk~~I~~~LveSGe~erLk~lL~~rL~E---cGW~ 54 (111)
....|.++|++.+ |..+.+++.+...... |||.
T Consensus 88 P~g~L~~aI~~~F---GS~e~fk~~f~~aa~~~fGSGW~ 123 (192)
T 3lio_A 88 PTGAVADAINAKW---GSFDAFKEALNDKAVNNFGSSWT 123 (192)
T ss_dssp CCHHHHHHHHHHH---SSHHHHHHHHHHHHHTCCSSEEE
T ss_pred CCHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCeEE
Confidence 3457999999876 9999999999877655 8884
No 183
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=20.64 E-value=44 Score=21.93 Aligned_cols=25 Identities=4% Similarity=0.336 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 38 EKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 38 erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
++|-+-=.+-+.+.|+. -.+++.|+
T Consensus 21 ~~Il~aA~~lf~~~G~~~~s~~~IA~ 46 (212)
T 3loc_A 21 KAILSAALDTFSQFGFHGTRLEQIAE 46 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHH
Confidence 34444444555555654 23444443
No 184
>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*
Probab=20.40 E-value=70 Score=22.41 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=15.3
Q ss_pred hhhccCCHHHHHHHHHHHHHH
Q 033797 85 KGRASIPDSIKTELLLRIRAF 105 (111)
Q Consensus 85 ~Ar~~VP~~VK~Ell~~Ir~f 105 (111)
.-....|+++|+.++.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~ 243 (244)
T 1ljr_A 223 KTLPTPSPEAYQAMLLRIARI 243 (244)
T ss_dssp TCSCCCCHHHHHHHHHHHHTC
T ss_pred ccCCCCCHHHHHHHHHHHhhc
Confidence 334667889998888887653
No 185
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=20.21 E-value=45 Score=22.25 Aligned_cols=27 Identities=7% Similarity=0.270 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHhcChH-HHHHHHHH
Q 033797 36 EKEKLMELLRERLVECGWK-DEMKALCR 62 (111)
Q Consensus 36 e~erLk~lL~~rL~EcGW~-DeVr~~~r 62 (111)
.+++|-+--.+-+.+.|+. -.|++.|+
T Consensus 6 ~r~~Il~aA~~lf~~~Gy~~~s~~~IA~ 33 (202)
T 2id6_A 6 KRDAILKAAVEVFGKKGYDRATTDEIAE 33 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHH
Confidence 3456666666677777764 35555554
Done!