Query 033797
Match_columns 111
No_of_seqs 101 out of 152
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 10:27:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033797.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033797hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sxjb1 a.80.1.1 (B:231-322) R 79.6 3.2 0.00023 25.0 6.2 53 48-104 10-64 (92)
2 d1tlqa_ a.195.1.1 (A:) Hypothe 73.9 2.6 0.00019 29.1 5.0 51 54-107 3-53 (161)
3 d2g7la1 a.4.1.9 (A:16-83) Puta 69.9 3.5 0.00026 23.3 4.2 29 54-82 6-34 (68)
4 d2gena1 a.4.1.9 (A:6-75) Proba 68.9 4.3 0.00031 22.6 4.5 30 54-83 2-31 (70)
5 d1jt6a1 a.4.1.9 (A:2-72) Multi 67.9 4.3 0.00031 22.9 4.3 29 54-82 3-31 (71)
6 d1iqpa1 a.80.1.1 (A:233-327) R 67.2 9.9 0.00072 22.6 9.5 62 39-105 6-68 (95)
7 d1jeqa1 a.140.2.1 (A:559-609) 66.6 6 0.00044 22.1 4.6 45 61-107 6-50 (51)
8 d2g7sa1 a.4.1.9 (A:3-76) Putat 65.8 3.3 0.00024 23.5 3.5 29 54-82 6-34 (74)
9 d1ui5a1 a.4.1.9 (A:5-75) A-fac 65.8 5.4 0.00039 22.5 4.5 29 54-82 7-35 (71)
10 d1sgma1 a.4.1.9 (A:5-77) Putat 64.9 5.7 0.00041 22.3 4.5 29 54-82 4-32 (73)
11 d2fx0a1 a.4.1.9 (A:4-76) Hemol 64.6 5.7 0.00042 22.7 4.5 29 54-82 6-34 (73)
12 d1pb6a1 a.4.1.9 (A:14-85) Hypo 64.0 5.6 0.0004 22.5 4.3 29 54-82 6-34 (72)
13 d2np5a1 a.4.1.9 (A:9-77) Trans 63.6 4 0.00029 22.7 3.5 29 54-82 3-31 (69)
14 d1sxjd1 a.80.1.1 (D:263-353) R 63.1 12 0.00085 22.0 6.8 49 52-104 16-66 (91)
15 d2oi8a1 a.4.1.9 (A:8-86) Putat 61.7 6.3 0.00046 22.5 4.3 29 54-82 11-39 (79)
16 d1q1va_ a.159.4.1 (A:) DEK C-t 61.1 9.5 0.00069 22.4 5.1 53 53-107 13-67 (70)
17 d2fd5a1 a.4.1.9 (A:1-76) Proba 60.6 6.8 0.00049 22.1 4.3 28 55-82 10-37 (76)
18 d1v7ba1 a.4.1.9 (A:1-74) Trans 60.4 7.1 0.00052 21.9 4.3 29 54-82 6-34 (74)
19 d3c07a1 a.4.1.9 (A:15-89) Puta 60.2 7.6 0.00055 21.7 4.4 29 54-82 7-35 (75)
20 d1rkta1 a.4.1.9 (A:2-82) Hypot 60.1 7.4 0.00054 22.2 4.4 29 54-82 13-41 (81)
21 d1zk8a1 a.4.1.9 (A:6-77) Trans 60.0 5 0.00036 22.6 3.5 29 54-82 5-33 (72)
22 d2fq4a1 a.4.1.9 (A:9-77) Trans 59.4 8.2 0.0006 21.6 4.5 28 55-82 7-34 (69)
23 d1vcsa1 a.47.2.1 (A:8-96) Vesi 59.4 3.1 0.00022 25.6 2.6 32 74-106 42-73 (89)
24 d2fbqa1 a.4.1.9 (A:2-80) Trans 58.8 8.2 0.0006 21.9 4.4 28 55-82 7-34 (79)
25 d2id3a1 a.4.1.9 (A:13-80) Puta 56.2 6.4 0.00046 22.0 3.5 28 55-82 9-36 (68)
26 d2hyja1 a.4.1.9 (A:8-82) Putat 55.0 6.7 0.00049 22.2 3.5 29 54-82 7-35 (75)
27 d1y9ia_ a.195.1.1 (A:) Low tem 54.8 10 0.00073 25.9 5.0 48 56-106 4-51 (159)
28 d1t56a1 a.4.1.9 (A:22-94) Ethr 54.2 6.7 0.00049 21.9 3.4 27 56-82 7-33 (73)
29 d1vi0a1 a.4.1.9 (A:6-77) Hypot 53.5 7.4 0.00054 21.7 3.5 28 55-82 4-31 (72)
30 d2iu5a1 a.4.1.9 (A:1-71) Trans 53.0 7.2 0.00052 21.9 3.4 28 55-82 9-36 (71)
31 d2d6ya1 a.4.1.9 (A:7-74) Putat 51.2 13 0.00096 20.6 4.4 29 54-82 4-32 (68)
32 d2id6a1 a.4.1.9 (A:1-75) Trans 49.9 3.6 0.00026 23.5 1.6 28 55-82 6-33 (75)
33 d2gfna1 a.4.1.9 (A:4-80) Proba 49.4 9.3 0.00068 21.6 3.5 27 56-82 10-36 (77)
34 d2i10a1 a.4.1.9 (A:10-78) Puta 48.3 11 0.00079 20.9 3.7 28 55-82 3-30 (69)
35 d1rfza_ a.195.1.1 (A:) YutG ho 47.7 7 0.00051 26.9 3.2 49 55-106 10-58 (164)
36 d1ly1a_ c.37.1.1 (A:) Polynucl 47.5 17 0.0012 21.8 4.8 35 73-107 114-148 (152)
37 d2csga1 b.82.2.12 (A:3-419) Hy 45.6 31 0.0022 26.4 7.0 45 65-109 51-111 (417)
38 d2o7ta1 a.4.1.9 (A:1-78) Trans 43.5 12 0.00088 21.2 3.4 28 55-82 10-37 (78)
39 d1mzba_ a.4.5.42 (A:) Ferric u 41.3 17 0.0012 22.6 4.2 53 46-98 5-58 (134)
40 d1z0xa1 a.4.1.9 (A:4-71) Trans 40.8 14 0.001 20.4 3.4 29 54-82 4-33 (68)
41 d2g3ba1 a.4.1.9 (A:2-73) Putat 40.7 6.1 0.00044 22.3 1.6 28 55-82 5-32 (72)
42 d2ff4a1 a.4.6.1 (A:10-104) Pro 39.9 27 0.002 20.2 4.8 44 65-109 34-77 (95)
43 d2vkva1 a.4.1.9 (A:6-67) Tetra 38.2 4.8 0.00035 22.2 0.9 28 55-82 2-29 (62)
44 d2iw1a1 c.87.1.8 (A:2-371) Lip 37.7 31 0.0023 22.6 5.3 48 33-82 319-366 (370)
45 d2g7ga1 a.4.1.9 (A:9-73) Putat 33.8 29 0.0021 19.0 4.0 27 54-82 3-29 (65)
46 d1lkja_ a.39.1.5 (A:) Calmodul 33.6 44 0.0032 19.9 5.2 65 36-102 64-128 (146)
47 d1mnga2 d.44.1.1 (A:93-203) Mn 33.2 22 0.0016 22.0 3.6 32 19-53 6-40 (111)
48 d1j6wa_ d.185.1.2 (A:) Autoind 32.9 5.8 0.00042 27.2 0.7 29 49-78 124-157 (161)
49 d2nyba2 d.44.1.1 (A:83-192) Fe 30.0 28 0.0021 21.5 3.8 32 19-53 6-40 (110)
50 d1yt3a3 c.55.3.5 (A:1-193) Rib 28.0 40 0.0029 22.0 4.5 30 39-68 161-190 (193)
51 d1zrja1 a.140.2.1 (A:1-37) Het 27.7 18 0.0013 18.7 2.1 32 73-106 6-37 (37)
52 d2do1a1 a.140.2.1 (A:5-46) Nuc 26.3 21 0.0016 19.0 2.2 21 89-109 20-40 (42)
53 d1wb8a2 d.44.1.1 (A:93-208) Fe 25.6 40 0.0029 21.0 3.9 33 18-53 8-43 (116)
54 d2bfda1 c.36.1.11 (A:6-400) Br 25.1 42 0.0031 25.1 4.6 34 70-108 350-383 (395)
55 d1bsma2 d.44.1.1 (A:87-201) Ca 23.4 30 0.0022 21.6 2.9 31 20-53 7-40 (115)
56 d2acva1 c.87.1.10 (A:3-463) Tr 23.3 12 0.0009 25.9 1.0 47 37-83 410-460 (461)
57 d2hkua1 a.4.1.9 (A:18-87) Puta 22.7 59 0.0043 17.7 4.4 26 55-81 4-29 (70)
58 d2gtvx1 a.130.1.3 (X:1-93) Cho 22.5 25 0.0018 20.9 2.3 56 28-83 32-87 (93)
59 d1w85a_ c.36.1.11 (A:) Pyruvat 22.4 99 0.0072 22.6 6.2 52 43-98 295-356 (365)
60 d2vcha1 c.87.1.10 (A:6-476) Hy 22.1 27 0.0019 24.1 2.7 31 58-88 438-468 (471)
61 d2pq3a1 a.39.1.5 (A:3-75) Calm 21.0 47 0.0034 18.1 3.2 39 46-85 32-73 (73)
62 d1sxje1 a.80.1.1 (E:256-354) R 20.7 89 0.0065 19.0 6.7 51 53-103 4-71 (99)
63 d1dlwa_ a.1.1.1 (A:) Protozoan 20.6 59 0.0043 19.1 3.9 35 32-66 73-107 (116)
64 d1qjca_ c.26.1.3 (A:) Phosphop 20.6 31 0.0023 20.4 2.5 16 87-102 141-156 (157)
65 d1ntca_ a.4.1.12 (A:) DNA-bind 20.2 71 0.0052 18.3 4.1 33 20-53 25-65 (91)
No 1
>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=79.63 E-value=3.2 Score=24.98 Aligned_cols=53 Identities=21% Similarity=0.331 Sum_probs=34.6
Q ss_pred HHhcChHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhc--cCCHHHHHHHHHHHHH
Q 033797 48 LVECGWKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRA--SIPDSIKTELLLRIRA 104 (111)
Q Consensus 48 L~EcGW~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~--~VP~~VK~Ell~~Ir~ 104 (111)
|..|-|.+-. +...+.+.+.| .+..|++..+-..... .+|+.+|-+++..|-.
T Consensus 10 l~~~~f~~a~-~~l~~~l~~~G---ys~~DIi~~l~~~i~~~~~~~e~~k~~il~~la~ 64 (92)
T d1sxjb1 10 LLASNLEDSI-QILRTDLWKKG---YSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGL 64 (92)
T ss_dssp HSCSSHHHHH-HHHHHTTTTTT---CCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 4556666533 23333333344 6788888877776654 5899999999988754
No 2
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis [TaxId: 1423]}
Probab=73.86 E-value=2.6 Score=29.09 Aligned_cols=51 Identities=16% Similarity=0.329 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLA 107 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~ 107 (111)
.+++.+.+++.+.++| ||++++.+-+.-.=...+|.-...+.+..+...|.
T Consensus 3 ~~~~~~~~~~~L~erG---Vt~~dIa~lv~~lq~~y~p~lt~eec~~~v~~vL~ 53 (161)
T d1tlqa_ 3 MNEMVDITKDMLNKRG---VMIEDIARIVQKLQEKYNPNLPLSVCMENVEKVLN 53 (161)
T ss_dssp HHHHHHHHHHHHHHTT---CCHHHHHHHHHHHTTTTCTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC---CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 4688889999999998 78999888776555555777666666666666653
No 3
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=69.91 E-value=3.5 Score=23.27 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+++|-+.+.+.+.+.|.+.+|+.+|.+++
T Consensus 6 r~~Il~aa~~l~~~~g~~~~si~~ia~~~ 34 (68)
T d2g7la1 6 RRWIVDTAVALMRAEGLEKVTMRRLAQEL 34 (68)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHH
Confidence 46777888899999999999999998875
No 4
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=68.88 E-value=4.3 Score=22.64 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhhc
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVIT 83 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I~ 83 (111)
+++|-+.+.+.+.++|.+.+|+.+|.++.-
T Consensus 2 R~~il~aa~~l~~~~G~~~~si~~Ia~~ag 31 (70)
T d2gena1 2 KDEILQAALACFSEHGVDATTIEMIRDRSG 31 (70)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHHC
Confidence 466777888999999999999999988753
No 5
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=67.88 E-value=4.3 Score=22.85 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++++-+.+.+.+.++|.+.+|+.+|.+..
T Consensus 3 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~a 31 (71)
T d1jt6a1 3 KDKILGVAKELFIKNGYNATTTGEIVKLS 31 (71)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHH
Confidence 45666778888899999999999998765
No 6
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=67.16 E-value=9.9 Score=22.59 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhh-ccCCHHHHHHHHHHHHHH
Q 033797 39 KLMELLRERLVECGWKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKGR-ASIPDSIKTELLLRIRAF 105 (111)
Q Consensus 39 rLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar-~~VP~~VK~Ell~~Ir~f 105 (111)
.|.++|..-+. ..| ++.+....+.+.+.| .+..|++..+..... .-+|+.+|-+++..|-.+
T Consensus 6 ~I~~il~~~l~-~~f-~~a~~~l~~l~~~~G---~s~~dIl~~l~~~v~~~~~~~~~k~~ll~~la~~ 68 (95)
T d1iqpa1 6 DIREMMLLALK-GNF-LKAREKLREILLKQG---LSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEY 68 (95)
T ss_dssp HHHHHHHHHHH-TCH-HHHHHHHHHHHHHHC---CCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCH-HHHHHHHHHHHHHcC---CCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 34444444443 223 445555555555555 566666665544332 358999999999888664
No 7
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.58 E-value=6 Score=22.06 Aligned_cols=45 Identities=24% Similarity=0.146 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHh
Q 033797 61 CRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLA 107 (111)
Q Consensus 61 ~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~ 107 (111)
+++.+...+....|+.+|=+...-.+...- -.|.+|+.||.++++
T Consensus 6 ~~~~~~~~~L~kltV~~LK~~lk~~gL~~s--GkKa~Li~Ri~~~l~ 50 (51)
T d1jeqa1 6 LKTHISKGTLGKFTVPMLKEACRAYGLKSG--LKKQELLEALTKHFQ 50 (51)
T ss_dssp HHHHHHHTCGGGCCHHHHHHHHHHTTCCCC--SSHHHHHHHHHHHHT
T ss_pred HHHHhccCcHhhCcHHHHHHHHHHcCCCCC--CcHHHHHHHHHHHhh
Confidence 344455555677788888777765554333 589999999999986
No 8
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=65.82 E-value=3.3 Score=23.54 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+++|-+.+.+.+.++|.+++|+.+|.+..
T Consensus 6 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~a 34 (74)
T d2g7sa1 6 ADDILQCARTLIIRGGYNSFSYADISQVV 34 (74)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHH
Confidence 35667778888889999999999998765
No 9
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=65.76 E-value=5.4 Score=22.50 Aligned_cols=29 Identities=10% Similarity=0.290 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++++-+.+.+.+.++|.+++|+.+|.++.
T Consensus 7 r~~il~aa~~l~~~~G~~~~si~~Ia~~a 35 (71)
T d1ui5a1 7 RATIIGAAADLFDRRGYESTTLSEIVAHA 35 (71)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHH
Confidence 35666778888899999999999998765
No 10
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=64.91 E-value=5.7 Score=22.34 Aligned_cols=29 Identities=7% Similarity=0.188 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++.|-+.|.+.+.++|.+++|+.+|.++.
T Consensus 4 r~~Il~aa~~l~~~~G~~~~si~~Ia~~a 32 (73)
T d1sgma1 4 REKILHTASRLSQLQGYHATGLNQIVKES 32 (73)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 46677778888999999999999998875
No 11
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=64.55 E-value=5.7 Score=22.65 Aligned_cols=29 Identities=3% Similarity=0.237 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+++|-+.|.+.+.++|.+.+|+.+|.++.
T Consensus 6 r~~Il~aa~~l~~~~G~~~~si~~Ia~~a 34 (73)
T d2fx0a1 6 MENILKAAKKKFGERGYEGTSIQEIAKEA 34 (73)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCcHHHHHHHH
Confidence 35666778888899999999999998765
No 12
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=64.03 E-value=5.6 Score=22.49 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+++|-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 6 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 34 (72)
T d1pb6a1 6 KKAILSAALDTFSQFGFHGTRLEQIAELA 34 (72)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHh
Confidence 45666778888899999999999998764
No 13
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=63.64 E-value=4 Score=22.74 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+|+|-..+.+.+.++|.+++|+.+|.++.
T Consensus 3 ~e~i~~aa~~l~~~~G~~~~ti~~Ia~~a 31 (69)
T d2np5a1 3 PERLAAALFDVAAESGLEGASVREVAKRA 31 (69)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHh
Confidence 35667778888888888888988888765
No 14
>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=63.12 E-value=12 Score=21.97 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchh--hhccCCHHHHHHHHHHHHH
Q 033797 52 GWKDEMKALCRAYIKKKGTNNVTVDDLVHVITPK--GRASIPDSIKTELLLRIRA 104 (111)
Q Consensus 52 GW~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~--Ar~~VP~~VK~Ell~~Ir~ 104 (111)
|=.++.+..+++++.+ | .+..+++..+... -...+|+.+|-+++..|-.
T Consensus 16 ~~f~~a~~~i~~l~~~-G---ys~~dIl~~l~~~vv~~~~i~~~~k~~i~~~la~ 66 (91)
T d1sxjd1 16 GDFDEIKKYVNTFMKS-G---WSAASVVNQLHEYYITNDNFDTNFKNQISWLLFT 66 (91)
T ss_dssp CCHHHHHHHHHHHHHT-S---CCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4455666666666543 5 3444555555543 2356899999999988754
No 15
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=61.68 E-value=6.3 Score=22.49 Aligned_cols=29 Identities=14% Similarity=0.333 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+++|-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 11 r~~il~aa~~l~~~~G~~~~t~~~Ia~~a 39 (79)
T d2oi8a1 11 RAEIKDHAWEQIATAGASALSLNAIAKRM 39 (79)
T ss_dssp HHHHHHHHHHHHHHHCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHh
Confidence 45566667777888888888888887764
No 16
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.05 E-value=9.5 Score=22.40 Aligned_cols=53 Identities=9% Similarity=0.150 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhh--hccCCHHHHHHHHHHHHHHHh
Q 033797 53 WKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKG--RASIPDSIKTELLLRIRAFLA 107 (111)
Q Consensus 53 W~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~A--r~~VP~~VK~Ell~~Ir~fL~ 107 (111)
+.++++...+++|+..+.+++|.-++-..+.-+= .++- +=|..|=..|.+||.
T Consensus 13 td~ei~~~i~~IL~~aDL~tvT~K~IR~~LE~~~~g~dL~--~rK~~I~~~I~~~Ls 67 (70)
T d1q1va_ 13 TDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT--ERKDFIKTTVKELIS 67 (70)
T ss_dssp CHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCS--HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHhhHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHh
Confidence 4578888899999999999999999999887432 2222 556666667888875
No 17
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=60.59 E-value=6.8 Score=22.11 Aligned_cols=28 Identities=7% Similarity=0.185 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++|-+.+.+.+.+.|.+++|+.+|.++.
T Consensus 10 ~~Il~aa~~l~~~~G~~~~si~~Ia~~a 37 (76)
T d2fd5a1 10 ARILGAATQALLERGAVEPSVGEVMGAA 37 (76)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHh
Confidence 4455567777888888888888888765
No 18
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=60.36 E-value=7.1 Score=21.95 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++.|-+.+.+.+.++|...+|+.+|.+..
T Consensus 6 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~a 34 (74)
T d1v7ba1 6 KEMILRTAIDYIGEYSLETLSYDSLAEAT 34 (74)
T ss_dssp HHHHHHHHHHHHHHSCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHh
Confidence 45667788889999999999999998765
No 19
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=60.21 E-value=7.6 Score=21.70 Aligned_cols=29 Identities=7% Similarity=0.179 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++.|-+.+.+.+.++|.+.+|+.+|....
T Consensus 7 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~a 35 (75)
T d3c07a1 7 RALILETAMRLFQERGYDRTTMRAIAQEA 35 (75)
T ss_dssp HHHHHHHHHHHHHHTCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHH
Confidence 34555677888888999999999998765
No 20
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=60.11 E-value=7.4 Score=22.24 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+++|-..+.+.+.+.|.+.+|+.+|.+..
T Consensus 13 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 41 (81)
T d1rkta1 13 QAEILEAAKTVFKRKGFELTTMKDVVEES 41 (81)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 45566778888899999999999998875
No 21
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=60.05 E-value=5 Score=22.61 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++.|-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 5 ~e~Il~aa~~l~~~~G~~~~t~~~Ia~~a 33 (72)
T d1zk8a1 5 LQKIVETAAEIADANGVQEVTLASLAQTL 33 (72)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHh
Confidence 46677788888899999999999998875
No 22
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=59.45 E-value=8.2 Score=21.62 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+.|-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~a 34 (69)
T d2fq4a1 7 KAILSASYELLLESGFKAVTVDKIAERA 34 (69)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHH
Confidence 4555667777888888888888887764
No 23
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=59.36 E-value=3.1 Score=25.60 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=26.9
Q ss_pred CHHHHHHhhchhhhccCCHHHHHHHHHHHHHHH
Q 033797 74 TVDDLVHVITPKGRASIPDSIKTELLLRIRAFL 106 (111)
Q Consensus 74 t~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL 106 (111)
..++|++.+.=.++.+ |.++|..+..+||.|=
T Consensus 42 EA~ell~qMelEvr~~-p~s~R~~~~~klr~Yk 73 (89)
T d1vcsa1 42 EARELLEQMDLEVREI-PPQSRGMYSNRMRSYK 73 (89)
T ss_dssp HHHHHHHHHHHHHTTS-CTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 3567888888888866 8899999999999984
No 24
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=58.77 E-value=8.2 Score=21.88 Aligned_cols=28 Identities=7% Similarity=0.143 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++|-+.+...+.++|.+.+|+.+|....
T Consensus 7 e~Il~aa~~~~~~~G~~~~ti~~Ia~~a 34 (79)
T d2fbqa1 7 ERILDAAEQLFAEKGFAETSLRLITSKA 34 (79)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHH
Confidence 4455666777777777777777776654
No 25
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=56.22 E-value=6.4 Score=21.96 Aligned_cols=28 Identities=4% Similarity=0.153 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+.|-+.+.+.+.+.|.+++|+.+|.+..
T Consensus 9 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~a 36 (68)
T d2id3a1 9 EAVLLAAGDALAADGFDALDLGEIARRA 36 (68)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHH
Confidence 4455556666777777777777776654
No 26
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=54.97 E-value=6.7 Score=22.23 Aligned_cols=29 Identities=10% Similarity=0.284 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+++|-+.+.+.+.+.|.+++|+.+|....
T Consensus 7 r~~il~aa~~l~~~~G~~~~t~~~Ia~~a 35 (75)
T d2hyja1 7 RGRILGRAAEIASEEGLDGITIGRLAEEL 35 (75)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCcHHHHHHHH
Confidence 35666777888888898889999888765
No 27
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
Probab=54.83 E-value=10 Score=25.87 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHH
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFL 106 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL 106 (111)
.+.+.+++.+.++| ||++++.+-+.-.=...+|.-.-.+.+..+...|
T Consensus 4 ~l~~~a~~~L~erG---Vt~~dIa~lv~~lq~~y~p~lt~ee~~~~v~~vL 51 (159)
T d1y9ia_ 4 ALESKARSWLIERG---VEIDDIAELVLFLQQKYHPGLELDICRQNVEHVL 51 (159)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHHHTTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 45666777777777 6777777766555555556554455555554444
No 28
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=54.19 E-value=6.7 Score=21.89 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
.|-+.+.+.+.+.|.+++|+.+|..+.
T Consensus 7 ~Il~aa~~l~~~~G~~~~t~~~Ia~~a 33 (73)
T d1t56a1 7 AILATAENLLEDRPLADISVDDLAKGA 33 (73)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 445556667777777777777776654
No 29
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=53.52 E-value=7.4 Score=21.67 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++|-+.+.+.+.+.|.+.+|+.+|.+..
T Consensus 4 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 31 (72)
T d1vi0a1 4 MQIIDAAVEVIAENGYHQSQVSKIAKQA 31 (72)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHH
Confidence 4555667777888888888888887765
No 30
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=52.98 E-value=7.2 Score=21.91 Aligned_cols=28 Identities=7% Similarity=0.279 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+.+-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 9 ~~I~~aa~~l~~~~G~~~~sv~~Ia~~a 36 (71)
T d2iu5a1 9 KIIAKAFKDLMQSNAYHQISVSDIMQTA 36 (71)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHh
Confidence 3455667777777777777877777664
No 31
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=51.24 E-value=13 Score=20.59 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++.|-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 4 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 32 (68)
T d2d6ya1 4 KARIFEAAVAEFARHGIAGARIDRIAAEA 32 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHH
Confidence 45666778888888898899998887764
No 32
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=49.92 E-value=3.6 Score=23.47 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+.|-+.+.+.+.+.|.+++|+.+|.++.
T Consensus 6 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 33 (75)
T d2id6a1 6 DAILKAAVEVFGKKGYDRATTDEIAEKA 33 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCHHHHHHHh
Confidence 4455556666666666666666666554
No 33
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=49.37 E-value=9.3 Score=21.57 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 56 EMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 56 eVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+|-+.+.+.+.+.|.+.+|+.+|.++.
T Consensus 10 ~Il~aa~~l~~~~G~~~~s~~~Ia~~a 36 (77)
T d2gfna1 10 ALADAVLALIAREGISAVTTRAVAEES 36 (77)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCHHHHHHHH
Confidence 344455555666666666666665543
No 34
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=48.30 E-value=11 Score=20.95 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+.|=+.|.+.+.++|.+++|+.+|.+..
T Consensus 3 e~iL~aA~~lf~~~G~~~~ti~~Ia~~a 30 (69)
T d2i10a1 3 QVALQTAMELFWRQGYEGTSITDLTKAL 30 (69)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcccCCHHHHHHHh
Confidence 3455667788889999999999998775
No 35
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=47.75 E-value=7 Score=26.86 Aligned_cols=49 Identities=16% Similarity=0.361 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHH
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFL 106 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL 106 (111)
+++.+.+++.+.++| ||++++.+-+.-.=...+|.-...+-+..+...|
T Consensus 10 ~~l~~~~~~~L~erG---Vt~~dIa~~v~~lq~~y~p~lt~e~c~~~v~~vL 58 (164)
T d1rfza_ 10 NNLEQTARRWLEERG---VTVEKIAELVYYLQSKYHPDLTMEECIENVNRVI 58 (164)
T ss_dssp TSCHHHHHHHHHHTT---CCHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHh
Confidence 356677788888887 7888888777666666666655555555555444
No 36
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=47.47 E-value=17 Score=21.77 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=31.9
Q ss_pred CCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHh
Q 033797 73 VTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLA 107 (111)
Q Consensus 73 vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~ 107 (111)
++.+.+++.+.-....-+|+++-+.+..+.++|+.
T Consensus 114 ~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~ 148 (152)
T d1ly1a_ 114 VPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLG 148 (152)
T ss_dssp CCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHccCCCCCCHHHHHHHHHHHHhhcC
Confidence 58999999999888899999999999999999874
No 37
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]}
Probab=45.60 E-value=31 Score=26.40 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=32.8
Q ss_pred HHHhC---CCCCCHHHHHHh-hchh------------hhccCCHHHHHHHHHHHHHHHhhh
Q 033797 65 IKKKG---TNNVTVDDLVHV-ITPK------------GRASIPDSIKTELLLRIRAFLASA 109 (111)
Q Consensus 65 i~~~g---~~~vt~~~L~~~-I~P~------------Ar~~VP~~VK~Ell~~Ir~fL~~~ 109 (111)
++++| +..|+|.+|... +.+. -|+.||.+--.+....|.+||+++
T Consensus 51 l~~~G~~iIPeI~F~dI~~~~~~~~~~~~IkrrG~vVIRnV~p~e~a~~w~~~l~~Yle~n 111 (417)
T d2csga1 51 LKAQGQPVWPIIPFSELAMGNISDATRAEVKRRGCAVIKGHFPREQALAWDQSMLDYLDKN 111 (417)
T ss_dssp HHHHTCCSSCBCCHHHHHTTCCCHHHHHHHHHHSEEEETTSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCceeeeHHHhhcCCCCHHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 34556 466799998753 3222 256789999999999999999874
No 38
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=43.46 E-value=12 Score=21.24 Aligned_cols=28 Identities=4% Similarity=0.189 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
+.|-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 10 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~a 37 (78)
T d2o7ta1 10 EHIITTTCNLYRTHHHDSLTMENIAEQA 37 (78)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCHHHHHHHh
Confidence 4555667777788888888888887664
No 39
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=41.28 E-value=17 Score=22.57 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=36.8
Q ss_pred HHHHhcChH-HHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 033797 46 ERLVECGWK-DEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTEL 98 (111)
Q Consensus 46 ~rL~EcGW~-DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~El 98 (111)
..|.+.|.+ ..=|...-++|.+.+...+|.++|++.+..+.-.+=...|++-|
T Consensus 5 ~~Lr~~GlR~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L 58 (134)
T d1mzba_ 5 SELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVL 58 (134)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccHHHHHHHH
Confidence 458899998 77777777788654324799999999998665444334555544
No 40
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=40.80 E-value=14 Score=20.43 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHH-hCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKK-KGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~-~g~~~vt~~~L~~~I 82 (111)
++.|-+.+.+.+.+ +|.+++|+.+|.++.
T Consensus 4 r~~Ii~aa~~l~~e~~G~~~~t~~~Ia~~a 33 (68)
T d1z0xa1 4 KDTIIAAAFSLLEKSPTLEQLSMRKVAKQL 33 (68)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccCHHHHHHHH
Confidence 35566667777754 588888888887765
No 41
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=40.65 E-value=6.1 Score=22.25 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++|-+.+.+.+.++|.+++|+.+|.++.
T Consensus 5 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 32 (72)
T d2g3ba1 5 DAILKASATAIAQRGIRGLRVNDVAEVA 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 3444555566666666666666665543
No 42
>d2ff4a1 a.4.6.1 (A:10-104) Probable regulatory protein EmbR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=39.92 E-value=27 Score=20.16 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=34.2
Q ss_pred HHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHhhh
Q 033797 65 IKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLASA 109 (111)
Q Consensus 65 i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~~ 109 (111)
+...| ..||.++|++.|-|..-...+...-.-.+.++|..|++.
T Consensus 34 ~~~~g-~~vs~~~l~~~lW~~~~~~~~~~~L~~~v~~LRk~L~~~ 77 (95)
T d2ff4a1 34 VINRN-RPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGA 77 (95)
T ss_dssp HHTTT-SEEEHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred HHCCC-eeEeHHHHHHHhcCCCccCCCcEEEEEEHHHHHHHHhhc
Confidence 34444 578999999999998666666666678899999999764
No 43
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=38.16 E-value=4.8 Score=22.20 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++|-+.+.+.+.+.|.+.+|+.+|.++.
T Consensus 2 ~~Il~aA~~l~~~~G~~~~s~~~Ia~~a 29 (62)
T d2vkva1 2 SKVINSALELGNEVGIEGLTTRKLAQKL 29 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 3444555556666666666666665543
No 44
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=37.74 E-value=31 Score=22.62 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=37.9
Q ss_pred hcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 33 ESGEKEKLMELLRERLVECGWKDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 33 eSGe~erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
..++.+.|.+.|..-|.+..-+.++.+.||+.++.. +.-+..+-+.+|
T Consensus 319 ~~~d~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~--~~~~~~~~~~~i 366 (370)
T d2iw1a1 319 EPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQ--DLYSLPEKAADI 366 (370)
T ss_dssp SSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS--CCSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh--ChhHHHHHHHHH
Confidence 558889999999988888888889999999988765 446666666554
No 45
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=33.79 E-value=29 Score=18.99 Aligned_cols=27 Identities=11% Similarity=0.391 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHhh
Q 033797 54 KDEMKALCRAYIKKKGTNNVTVDDLVHVI 82 (111)
Q Consensus 54 ~DeVr~~~re~i~~~g~~~vt~~~L~~~I 82 (111)
++++-+.+.+.+.+.| .+|+.+|.++.
T Consensus 3 R~~Il~aa~~l~~~~G--~~ti~~Ia~~a 29 (65)
T d2g7ga1 3 RERIAEAALELVDRDG--DFRMPDLARHL 29 (65)
T ss_dssp HHHHHHHHHHHHHHHS--SCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC--CCCHHHHHHHh
Confidence 4566777778888787 68888777654
No 46
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.59 E-value=44 Score=19.91 Aligned_cols=65 Identities=20% Similarity=0.380 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHH
Q 033797 36 EKEKLMELLRERLVECGWKDEMKALCRAYIKKKGTNNVTVDDLVHVITPKGRASIPDSIKTELLLRI 102 (111)
Q Consensus 36 e~erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~I 102 (111)
+++.....+.......++.++++...+. +...+...++.++|..-+...+. .+|++.-.+++..+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~aF~~-~D~d~~G~I~~~el~~~l~~~g~-~~~~~~~~~~~~~~ 128 (146)
T d1lkja_ 64 EFSEFLALMSRQLKSNDSEQELLEAFKV-FDKNGDGLISAAELKHVLTSIGE-KLTDAEVDDMLREV 128 (146)
T ss_dssp EHHHHHHHHHHHTCCCCHHHHHHHHHHH-HCSSSSCEEEHHHHHHHHHHHTC-SCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHH-hCCCCCCcCcHHHHHHHHHHcCC-cccHHHHHHHHHhc
Confidence 4566666666667777778888877764 44445556899999888877775 45555556665543
No 47
>d1mnga2 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]}
Probab=33.24 E-value=22 Score=22.05 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=25.0
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHH---hcCh
Q 033797 19 KEPTLQEIINIKMIESGEKEKLMELLRERLV---ECGW 53 (111)
Q Consensus 19 ~~~~lk~~I~~~LveSGe~erLk~lL~~rL~---EcGW 53 (111)
....|++.|+..+ |.+|.+++.+.+... -|||
T Consensus 6 P~g~L~~~Ie~~F---GS~d~fk~~f~~~a~~~~GsGW 40 (111)
T d1mnga2 6 PVGELKKAIDEQF---GGFQALKEKLTQAAMGRFGSGW 40 (111)
T ss_dssp CCHHHHHHHHHHH---SSHHHHHHHHHHHHHTCCSSEE
T ss_pred CCHHHHHHHHHHh---CCHHHHHHHHHHhhcccccceE
Confidence 3567888898866 899999998877665 3777
No 48
>d1j6wa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Haemophilus influenzae [TaxId: 727]}
Probab=32.89 E-value=5.8 Score=27.25 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=20.3
Q ss_pred HhcChH-----HHHHHHHHHHHHHhCCCCCCHHHH
Q 033797 49 VECGWK-----DEMKALCRAYIKKKGTNNVTVDDL 78 (111)
Q Consensus 49 ~EcGW~-----DeVr~~~re~i~~~g~~~vt~~~L 78 (111)
.+|||+ +..|..|+.++. .|+++.+.++|
T Consensus 124 ~~CGny~~hsL~~Ak~~A~~~L~-~~l~~~~~~~l 157 (161)
T d1j6wa_ 124 YQCGSYTEHSLEDAHEIAKNVIA-RGIGVNKNEDL 157 (161)
T ss_dssp TTCTTTTSCCHHHHHHHHHHHHH-HCCEEECGGGG
T ss_pred hhCCChhhCCHHHHHHHHHHHHH-hhcccCcchhc
Confidence 479997 578899999885 45555554443
No 49
>d2nyba2 d.44.1.1 (A:83-192) Fe superoxide dismutase (FeSOD) {Escherichia coli [TaxId: 562]}
Probab=30.01 E-value=28 Score=21.47 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHH---hcCh
Q 033797 19 KEPTLQEIINIKMIESGEKEKLMELLRERLV---ECGW 53 (111)
Q Consensus 19 ~~~~lk~~I~~~LveSGe~erLk~lL~~rL~---EcGW 53 (111)
....|++.|+..+ |.++.+++.+.+... -|||
T Consensus 6 P~g~L~~~I~~~F---GS~d~fk~~f~~~a~~~~GsGW 40 (110)
T d2nyba2 6 PTGKVAEAIAASF---GSFADFKAQFTDAAIKNFGSGW 40 (110)
T ss_dssp CCHHHHHHHHHHH---SSHHHHHHHHHHHHHHCCSSEE
T ss_pred CCHHHHHHHHHHh---CCHHHHHHHHHHHHhcCCCceE
Confidence 3567888998776 999999998876554 4677
No 50
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=28.02 E-value=40 Score=22.00 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHh
Q 033797 39 KLMELLRERLVECGWKDEMKALCRAYIKKK 68 (111)
Q Consensus 39 rLk~lL~~rL~EcGW~DeVr~~~re~i~~~ 68 (111)
.|-+.|..+|.+.||.+.+.+-|+.....+
T Consensus 161 ~L~~~L~~~l~~~~~l~~~~~e~~~l~~~~ 190 (193)
T d1yt3a3 161 PITAKLMVETEASGWLPAALDECRLMQMRR 190 (193)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHhh
Confidence 467778889999999999999887765543
No 51
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.68 E-value=18 Score=18.69 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=17.0
Q ss_pred CCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHH
Q 033797 73 VTVDDLVHVITPKGRASIPDSIKTELLLRIRAFL 106 (111)
Q Consensus 73 vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL 106 (111)
.++.+|-++.. +|.+=..-.|.+|+.|+.++|
T Consensus 6 m~V~eLK~~Lk--~rgL~~sG~Ka~Li~RL~~al 37 (37)
T d1zrja1 6 LKVNELREELQ--RRGLDTRGLKAELAERLQAAL 37 (37)
T ss_dssp SCHHHHHHHHH--HTTCCCCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHH--HCCCCCCCCHHHHHHHHHHhC
Confidence 34444444332 233333456777888877765
No 52
>d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.27 E-value=21 Score=18.96 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=15.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhh
Q 033797 89 SIPDSIKTELLLRIRAFLASA 109 (111)
Q Consensus 89 ~VP~~VK~Ell~~Ir~fL~~~ 109 (111)
+=----|.+|+.++.+||++.
T Consensus 20 l~~kgnk~dli~rlqayleeh 40 (42)
T d2do1a1 20 LETKGIKQDLIHRLQAYLEEH 40 (42)
T ss_dssp CCCCSCHHHHHHHHHHHHHHT
T ss_pred ccccCcHHHHHHHHHHHHHHh
Confidence 333445889999999999874
No 53
>d1wb8a2 d.44.1.1 (A:93-208) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=25.56 E-value=40 Score=21.03 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=24.9
Q ss_pred cchhhHHHHHHHHHHhcchHHHHHHHHHHHH---HhcCh
Q 033797 18 EKEPTLQEIINIKMIESGEKEKLMELLRERL---VECGW 53 (111)
Q Consensus 18 ~~~~~lk~~I~~~LveSGe~erLk~lL~~rL---~EcGW 53 (111)
.....|++.|++.+ |.+|.+++.+.+.. .-|||
T Consensus 8 ~P~g~l~~~I~~~F---GS~d~fk~~f~~~a~~~~GsGW 43 (116)
T d1wb8a2 8 KPGGALADLINKQY---GSFDRFKQVFTETANSLPGTGW 43 (116)
T ss_dssp CCCHHHHHHHHHHH---SSHHHHHHHHHHHHHTCCSSEE
T ss_pred CCCHHHHHHHHHHh---CCHHHHHHHHHHHHhcCcccce
Confidence 34567888887764 88999999987664 34788
No 54
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.07 E-value=42 Score=25.05 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHHhh
Q 033797 70 TNNVTVDDLVHVITPKGRASIPDSIKTELLLRIRAFLAS 108 (111)
Q Consensus 70 ~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~ 108 (111)
....+.++|++.|- +-+|.+++++ .+.++++|.+
T Consensus 350 ~p~P~~~~l~~~VY----ae~p~~l~eq-~~~~~~~~~~ 383 (395)
T d2bfda1 350 KPKPNPNLLFSDVY----QEMPAQLRKQ-QESLARHLQT 383 (395)
T ss_dssp SCBCCGGGGSTTSS----SSCCHHHHHH-HHHHHHHHHH
T ss_pred CCCCCHHHHHhhcc----cCCCHHHHHH-HHHHHHHHHh
Confidence 35678888888887 4578777666 3446666544
No 55
>d1bsma2 d.44.1.1 (A:87-201) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]}
Probab=23.43 E-value=30 Score=21.57 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHHHH---HhcCh
Q 033797 20 EPTLQEIINIKMIESGEKEKLMELLRERL---VECGW 53 (111)
Q Consensus 20 ~~~lk~~I~~~LveSGe~erLk~lL~~rL---~EcGW 53 (111)
...|++.|++. -|.++.+++.+.... .-|||
T Consensus 7 ~g~L~~~I~~~---FGS~~~fk~~f~~~A~~~~GsGW 40 (115)
T d1bsma2 7 TDELGAAIDEF---FGSFDNMKAQFTAAATGIQGSGW 40 (115)
T ss_dssp CHHHHHHHHHH---HSSHHHHHHHHHHHHHCCSSSEE
T ss_pred CHHHHHHHHHH---hCCHHHHHHHHHHhhhcccccce
Confidence 45788888875 489999999998774 45788
No 56
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]}
Probab=23.26 E-value=12 Score=25.87 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHh-cChHHHHHHH---HHHHHHHhCCCCCCHHHHHHhhc
Q 033797 37 KEKLMELLRERLVE-CGWKDEMKAL---CRAYIKKKGTNNVTVDDLVHVIT 83 (111)
Q Consensus 37 ~erLk~lL~~rL~E-cGW~DeVr~~---~re~i~~~g~~~vt~~~L~~~I~ 83 (111)
.+.|.+.|++-|.+ +.-+..++++ +|+.+.+.|+...++++++++|+
T Consensus 410 ~~~l~~a~~~vl~~d~~~r~~a~~l~~~~r~a~~~gg~s~~~~~~~~~~~~ 460 (461)
T d2acva1 410 AEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDIT 460 (461)
T ss_dssp HHHHHHHHHHHTCTTCTHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Confidence 34555555555532 4455544443 34444445544466888888875
No 57
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=22.71 E-value=59 Score=17.72 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHh
Q 033797 55 DEMKALCRAYIKKKGTNNVTVDDLVHV 81 (111)
Q Consensus 55 DeVr~~~re~i~~~g~~~vt~~~L~~~ 81 (111)
+.|-+.+.+.+.++|. .+|+.+|.+.
T Consensus 4 ~~Il~aA~~l~~~~G~-~~t~~~Ia~~ 29 (70)
T d2hkua1 4 DALFTAATELFLEHGE-GVPITQICAA 29 (70)
T ss_dssp HHHHHHHHHHHHHHCT-TSCHHHHHHH
T ss_pred HHHHHHHHHHHHhccc-CchHHHHHHH
Confidence 3444455556666664 4666666554
No 58
>d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246 {Methanococcus jannaschii [TaxId: 2190]}
Probab=22.47 E-value=25 Score=20.94 Aligned_cols=56 Identities=5% Similarity=-0.025 Sum_probs=24.0
Q ss_pred HHHHHhcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCHHHHHHhhc
Q 033797 28 NIKMIESGEKEKLMELLRERLVECGWKDEMKALCRAYIKKKGTNNVTVDDLVHVIT 83 (111)
Q Consensus 28 ~~~LveSGe~erLk~lL~~rL~EcGW~DeVr~~~re~i~~~g~~~vt~~~L~~~I~ 83 (111)
.+|+--+.+--++|.....-...-+...+|-..+++...+.|.+.-.+..+|..|.
T Consensus 32 ~~R~~l~~~I~~~K~~~~~pi~d~~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii 87 (93)
T d2gtvx1 32 AERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKIFQRLI 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhhhCCcCHHHHHHHHHHHH
Confidence 33433344444444333333333444444444444444444443333444444443
No 59
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.39 E-value=99 Score=22.57 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=32.4
Q ss_pred HHHHHHHhcChH-----HHHHHHHHHHH-----HHhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 033797 43 LLRERLVECGWK-----DEMKALCRAYI-----KKKGTNNVTVDDLVHVITPKGRASIPDSIKTEL 98 (111)
Q Consensus 43 lL~~rL~EcGW~-----DeVr~~~re~i-----~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~El 98 (111)
.++.+|++-||. ++++..+++.+ ........+.++|++.|- +-+|.+++.+.
T Consensus 295 ~~~~~L~~~g~~~~~el~~i~~e~~~eV~~A~~~A~~sP~P~~~~l~~~Vy----~e~p~~l~eq~ 356 (365)
T d1w85a_ 295 RFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMF----EELPFNLKEQY 356 (365)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHTSC----SSCCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhc----cCCCHHHHHHH
Confidence 455666666652 12333333333 223556789999999998 55898887763
No 60
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=22.06 E-value=27 Score=24.10 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHhhchhhhc
Q 033797 58 KALCRAYIKKKGTNNVTVDDLVHVITPKGRA 88 (111)
Q Consensus 58 r~~~re~i~~~g~~~vt~~~L~~~I~P~Ar~ 88 (111)
++.+|..+.+.|...-+++.+++++.-.+++
T Consensus 438 ~e~~~~a~~~gG~s~~~~~~~~~~~~~~~~~ 468 (471)
T d2vcha1 438 KEAACRVLKDDGTSTKALSLVALKWKAHKKE 468 (471)
T ss_dssp HHHHHHHTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHh
Confidence 3344444445564444678888888766554
No 61
>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}
Probab=21.04 E-value=47 Score=18.06 Aligned_cols=39 Identities=10% Similarity=0.301 Sum_probs=21.1
Q ss_pred HHHHhcCh---HHHHHHHHHHHHHHhCCCCCCHHHHHHhhchh
Q 033797 46 ERLVECGW---KDEMKALCRAYIKKKGTNNVTVDDLVHVITPK 85 (111)
Q Consensus 46 ~rL~EcGW---~DeVr~~~re~i~~~g~~~vt~~~L~~~I~P~ 85 (111)
.-|...|. .++++.+.+.+ ...|...|+|++.+.-++++
T Consensus 32 ~~l~~~g~~~s~~~~~~~~~~~-D~d~~g~I~f~eF~~~m~~k 73 (73)
T d2pq3a1 32 TVMRSLGQNPTEAELQDMINEV-DADGNGTIDFPEFLTMMARK 73 (73)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHH-CTTCSSEEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHh-CCCCCCeEeHHHHHHHHhcC
Confidence 33444444 34444444433 33345567888888766653
No 62
>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.68 E-value=89 Score=19.03 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHhC---------------CCCCCHHHHHHhhchhhh--ccCCHHHHHHHHHHHH
Q 033797 53 WKDEMKALCRAYIKKKG---------------TNNVTVDDLVHVITPKGR--ASIPDSIKTELLLRIR 103 (111)
Q Consensus 53 W~DeVr~~~re~i~~~g---------------~~~vt~~~L~~~I~P~Ar--~~VP~~VK~Ell~~Ir 103 (111)
|..-+.+.|+.++.++. +..+.-+-++..+.-.=. .-++++.|.|+..-.-
T Consensus 4 We~~i~~ia~~I~~eqsp~~L~~iR~~lYeLL~~cIpp~~Ilk~L~~~Ll~~~~~d~~lk~eii~~aa 71 (99)
T d1sxje1 4 WIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSS 71 (99)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 78888888888776553 345666666665554332 3467778888775443
No 63
>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
Probab=20.64 E-value=59 Score=19.10 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=26.6
Q ss_pred HhcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 033797 32 IESGEKEKLMELLRERLVECGWKDEMKALCRAYIK 66 (111)
Q Consensus 32 veSGe~erLk~lL~~rL~EcGW~DeVr~~~re~i~ 66 (111)
+...++++..+.|.+-|.|+|.-++....+...+.
T Consensus 73 I~~~~fd~~~~~l~~al~e~~v~~~~~~e~~~~~~ 107 (116)
T d1dlwa_ 73 VSNAQFTTVIGHLRSALTGAGVAAALVEQTVAVAE 107 (116)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44567888888888888888888877777766654
No 64
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}
Probab=20.56 E-value=31 Score=20.42 Aligned_cols=16 Identities=13% Similarity=0.522 Sum_probs=12.8
Q ss_pred hccCCHHHHHHHHHHH
Q 033797 87 RASIPDSIKTELLLRI 102 (111)
Q Consensus 87 r~~VP~~VK~Ell~~I 102 (111)
..+||++|.+-|.+++
T Consensus 141 ~~lvP~~V~~yI~~k~ 156 (157)
T d1qjca_ 141 THFLPENVHQALMAKL 156 (157)
T ss_dssp GGGSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhh
Confidence 3679999998887764
No 65
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=20.24 E-value=71 Score=18.27 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHhcchHHHH--------HHHHHHHHHhcCh
Q 033797 20 EPTLQEIINIKMIESGEKEKL--------MELLRERLVECGW 53 (111)
Q Consensus 20 ~~~lk~~I~~~LveSGe~erL--------k~lL~~rL~EcGW 53 (111)
+..|...+.+.|- .|+-+.+ +.++..-|..|||
T Consensus 25 ~~~L~~~~~~~l~-~~~~~~l~~~~~~~E~~lI~~aL~~~~G 65 (91)
T d1ntca_ 25 ATLLAQWADRALR-SGHQNLLSEAQPELERTLLTTALRHTQG 65 (91)
T ss_dssp HHHHHHHHHHHHT-TTCCSHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH-cCCccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4556666666664 3442222 2345555666666
Done!