Query 033799
Match_columns 111
No_of_seqs 104 out of 150
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 06:25:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3477 Putative cytochrome c 100.0 3.4E-42 7.4E-47 245.1 5.7 80 1-81 1-80 (97)
2 PF06747 CHCH: CHCH domain; I 98.9 5.7E-10 1.2E-14 63.9 2.5 35 31-65 1-35 (35)
3 KOG4695 Uncharacterized conser 93.3 0.093 2E-06 39.4 3.1 54 28-81 45-101 (122)
4 PF08991 DUF1903: Domain of un 92.4 0.18 3.8E-06 33.9 3.2 35 30-64 3-37 (67)
5 cd00926 Cyt_c_Oxidase_VIb Cyto 88.2 0.77 1.7E-05 31.1 3.5 43 18-60 9-52 (75)
6 PF05676 NDUF_B7: NADH-ubiquin 86.6 0.47 1E-05 31.9 1.7 44 22-65 13-56 (66)
7 KOG4618 Uncharacterized conser 81.9 1.8 3.9E-05 30.3 3.0 35 29-63 22-56 (74)
8 PF02297 COX6B: Cytochrome oxi 78.9 1.9 4.1E-05 28.6 2.3 34 30-63 11-54 (76)
9 PF10203 Pet191_N: Cytochrome 76.7 2.2 4.8E-05 28.6 2.1 28 37-64 28-56 (68)
10 PF10200 Ndufs5: NADH:ubiquino 66.8 9.8 0.00021 27.3 3.7 43 24-66 26-70 (96)
11 PF08583 Cmc1: Cytochrome c ox 63.2 6 0.00013 24.7 1.9 35 29-63 11-46 (69)
12 KOG3057 Cytochrome c oxidase, 61.2 14 0.0003 27.5 3.7 42 20-61 46-88 (112)
13 KOG4090 Uncharacterized conser 57.4 14 0.0003 29.0 3.3 46 23-68 110-155 (157)
14 KOG4083 Head-elevated expressi 56.8 8.7 0.00019 30.9 2.2 37 27-63 144-180 (192)
15 PHA03005 sulfhydryl oxidase; P 53.0 21 0.00045 26.0 3.4 44 23-74 21-65 (96)
16 PF05051 COX17: Cytochrome C o 49.6 19 0.0004 23.4 2.4 18 31-48 31-48 (49)
17 KOG3481 Uncharacterized conser 47.9 30 0.00065 24.9 3.5 50 29-78 11-71 (87)
18 PF05051 COX17: Cytochrome C o 47.7 32 0.0007 22.2 3.3 31 30-62 11-41 (49)
19 PLN03079 Uncharacterized prote 47.3 58 0.0013 23.5 4.9 36 30-65 17-60 (91)
20 PF10249 NDUFB10: NADH-ubiquin 47.0 28 0.00061 26.2 3.4 26 36-61 68-94 (128)
21 PF07956 DUF1690: Protein of U 42.7 37 0.00081 25.4 3.5 36 27-62 105-140 (142)
22 KOG3458 NADH:ubiquinone oxidor 37.3 26 0.00056 27.8 2.0 37 30-66 77-114 (170)
23 PF05529 Bap31: B-cell recepto 35.2 19 0.00041 26.8 1.0 20 92-111 88-107 (192)
24 KOG4110 NADH:ubiquinone oxidor 33.4 67 0.0014 24.3 3.6 52 18-69 22-77 (120)
25 KOG4114 Cytochrome c oxidase a 31.4 39 0.00085 23.6 1.9 24 40-63 31-56 (73)
26 PF02320 UCR_hinge: Ubiquinol- 29.3 75 0.0016 21.0 3.0 35 29-63 15-52 (65)
27 PF04805 Pox_E10: E10-like pro 28.1 52 0.0011 22.8 2.1 24 48-74 17-40 (70)
28 PF01111 CKS: Cyclin-dependent 27.6 25 0.00055 24.1 0.5 25 56-80 21-45 (70)
29 PF05254 UPF0203: Uncharacteri 25.0 1.1E+02 0.0024 20.4 3.2 37 29-65 7-51 (68)
30 PF15628 RRM_DME: RRM in Demet 24.3 32 0.0007 25.4 0.6 8 19-26 11-18 (103)
31 COG5497 Predicted secreted pro 24.1 22 0.00047 29.3 -0.4 25 71-95 21-45 (228)
32 PLN00010 cyclin-dependent kina 22.1 29 0.00062 24.9 -0.1 21 65-86 32-52 (86)
33 PF06924 DUF1281: Protein of u 21.9 99 0.0021 23.7 2.8 57 34-95 72-129 (134)
34 KOG4715 SWI/SNF-related matrix 20.7 3.3E+02 0.0072 24.2 6.0 70 29-99 116-207 (410)
No 1
>KOG3477 consensus Putative cytochrome c oxidase, subunit COX19 [Energy production and conversion]
Probab=100.00 E-value=3.4e-42 Score=245.09 Aligned_cols=80 Identities=50% Similarity=0.991 Sum_probs=76.7
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCCCCCcccchHHHHHHHHHHHHcCCCChhHHHHHHhHhhcccccCCCCcccccccccC
Q 033799 1 MSAGGAFGGNRGARPVPPEKGVFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNAQSMHSLVHWERD 80 (111)
Q Consensus 1 MSfG~pgg~~~~~~ptPPerGSFPLDH~gECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd~~LMakdd~~nlGf~ 80 (111)
|| ++|+++.+..+|+||+||||||||+|||+..|+.||.||+....++++||.+||+||+|||+++||++|||.+|||+
T Consensus 1 MS-~~g~~~~r~lrp~pPekGsFPLDH~geC~~em~eYl~Cl~~k~e~~~eCR~laK~YlqCRMdh~Lmdkdd~~~LG~~ 79 (97)
T KOG3477|consen 1 MS-TGGAGGNRGLRPIPPEKGSFPLDHLGECTAEMKEYLGCLKSKAENSEECRLLAKKYLQCRMDHGLMDKDDMAELGFS 79 (97)
T ss_pred CC-CCCCCCcccccCCCcccCCcCCCcccccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccccHHHHHHcCCC
Confidence 78 55558899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 033799 81 N 81 (111)
Q Consensus 81 ~ 81 (111)
.
T Consensus 80 ~ 80 (97)
T KOG3477|consen 80 G 80 (97)
T ss_pred c
Confidence 7
No 2
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=98.94 E-value=5.7e-10 Score=63.86 Aligned_cols=35 Identities=43% Similarity=0.789 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHHcCCCChhHHHHHHhHhhcccc
Q 033799 31 CDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMA 65 (111)
Q Consensus 31 Ck~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd 65 (111)
|..+|..|+.||++|+.+.+.||.++++|++|||+
T Consensus 1 C~~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~C~~~ 35 (35)
T PF06747_consen 1 CAEEMKAYLACLKENNFDWSKCRKEFKAYKECRMK 35 (35)
T ss_dssp THHHHHHHHHHHHCH-SSTCCCHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCcHHhhHHHHHHHHHHhhC
Confidence 88999999999999999999999999999999985
No 3
>KOG4695 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.28 E-value=0.093 Score=39.44 Aligned_cols=54 Identities=17% Similarity=0.315 Sum_probs=42.3
Q ss_pred cccchHHHHHHHHHHHHcCCCChhHHHHHHhHhhcc---cccCCCCcccccccccCC
Q 033799 28 MHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR---MAKNAQSMHSLVHWERDN 81 (111)
Q Consensus 28 ~gECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CR---Md~~LMakdd~~nlGf~~ 81 (111)
+..|..+|..-+.|||.|...+..||++-.-|+.|- |+..-=.++--+-||.+-
T Consensus 45 ~~tC~qEm~vlfaClK~nEF~d~~C~Kei~~f~dC~~~ya~ea~~~r~~~gtlgesg 101 (122)
T KOG4695|consen 45 EATCIQEMSVLFACLKQNEFRDDACRKEIQGFLDCAARYAQEARKMRSIQETLGESG 101 (122)
T ss_pred chHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhCCcc
Confidence 778999999999999999999999999999999984 554333333335555554
No 4
>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []. MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.
Probab=92.36 E-value=0.18 Score=33.87 Aligned_cols=35 Identities=20% Similarity=0.464 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHHHHcCCCChhHHHHHHhHhhccc
Q 033799 30 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRM 64 (111)
Q Consensus 30 ECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRM 64 (111)
.|+.+.-....||.+|+.+.++|..+-.+|-+|.-
T Consensus 3 PC~~~Ac~iq~CL~~N~Yd~~kC~~~i~~l~~Cck 37 (67)
T PF08991_consen 3 PCQKEACAIQKCLQRNNYDESKCQDYIDALYECCK 37 (67)
T ss_dssp TTHHHHHHHHHHHHHTTT-CCCTHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 48888999999999999999999999999999974
No 5
>cd00926 Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex.
Probab=88.17 E-value=0.77 Score=31.10 Aligned_cols=43 Identities=28% Similarity=0.626 Sum_probs=32.6
Q ss_pred CCCCCCC-CCCcccchHHHHHHHHHHHHcCCCChhHHHHHHhHh
Q 033799 18 PEKGVFP-LDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYL 60 (111)
Q Consensus 18 PerGSFP-LDH~gECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL 60 (111)
|--=.|| -----.|-..-..|..||++++.+++.|..+-+.|=
T Consensus 9 ~~D~RfP~~nq~k~Cw~~y~~y~~Cl~~~ged~~~C~~~~~~~e 52 (75)
T cd00926 9 PFDPRFPNQNQTKHCWQRYVDYHRCIKAKGEDASPCKKFRRVYE 52 (75)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3333455 233345777778999999999999999999999883
No 6
>PF05676 NDUF_B7: NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7); InterPro: IPR008698 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase B18 subunit proteins from different eukaryotic organisms. Oxidative phosphorylation is the well-characterised process in which ATP, the principal carrier of chemical energy of individual cells, is produced due to a mitochondrial proton gradient formed by the transfer of electrons from NADH and FADH2 to molecular oxygen. The oxidative phosphorylation (OXPHOS) system is located in the mitochondrial inner membrane and consists of five multi-subunit enzyme complexes and two small electron carriers: coenzyme Q10 and cytochrome C. At least 70 structural proteins involved in the formation of the whole OXPHOS system are encoded by nuclear genes, whereas 13 structural proteins are encoded by the mitochondrial genome. Deficiency of NADH ubiquinone oxidoreductase, the first enzyme complex of the mitochondrial respiratory chain, is one of the most frequent causes of Homo sapiens mitochondrial encephalomyopathies [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=86.62 E-value=0.47 Score=31.91 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=39.7
Q ss_pred CCCCCCcccchHHHHHHHHHHHHcCCCChhHHHHHHhHhhcccc
Q 033799 22 VFPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMA 65 (111)
Q Consensus 22 SFPLDH~gECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd 65 (111)
.-||..-..|-.....|++|.+++-...-+|..+--+|-.|.-+
T Consensus 13 ~lPl~~RDyCAh~Li~l~kCrr~~~p~~~~C~~erH~y~~C~y~ 56 (66)
T PF05676_consen 13 KLPLQYRDYCAHLLIPLNKCRRDNFPFPWKCEHERHEYEKCQYD 56 (66)
T ss_pred CCChhhhhhHHHHHHHHHHHHHhCCCCcccCCcchhhHHHccHH
Confidence 35888889999999999999999988889999999999999754
No 7
>KOG4618 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.94 E-value=1.8 Score=30.26 Aligned_cols=35 Identities=26% Similarity=0.624 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHHHHHcCCCChhHHHHHHhHhhcc
Q 033799 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (111)
Q Consensus 29 gECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CR 63 (111)
.-|-+.-..-++||.+|+.+-++|...=-.|=+|+
T Consensus 22 nPCl~es~aSfkCLeennyDRsKCq~yFd~YkeCK 56 (74)
T KOG4618|consen 22 NPCLLESSASFKCLEENNYDRSKCQDYFDVYKECK 56 (74)
T ss_pred ChHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999998885
No 8
>PF02297 COX6B: Cytochrome oxidase c subunit VIb; InterPro: IPR003213 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex that is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptide subunits. One of these subunits is the potentially haem-binding subunit, VIb, which is encoded in the nucleus []. ; GO: 0004129 cytochrome-c oxidase activity, 0005739 mitochondrion; PDB: 1OCC_U 1OCR_U 2DYS_H 3ASO_H 3AG3_U 2EIL_H 2EIJ_U 3AG2_U 3ABM_U 2EIN_U ....
Probab=78.88 E-value=1.9 Score=28.63 Aligned_cols=34 Identities=32% Similarity=0.852 Sum_probs=28.8
Q ss_pred cchHHHHHHHHHHHHcCC---------CChhHHHHHHhHhh-cc
Q 033799 30 QCDLEKKDYIGCLKSSGH---------QSENCRIFSKKYLE-CR 63 (111)
Q Consensus 30 ECk~~m~~Yl~CLk~~~~---------~~~~CR~laK~YL~-CR 63 (111)
.|=..-..|..||..++. +.+.|..+-+.|-+ |-
T Consensus 11 ~Cw~arD~y~~Cl~~~~~~~~~~~~~~~~~~C~~~~~~ye~~Cp 54 (76)
T PF02297_consen 11 KCWQARDDYFKCLDKNGEPDSEKEKKKDESACKYFRKNYESNCP 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHH------TTTTGGGGHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHcCccccccccccchhhhHHHHHHHHHhCc
Confidence 477778899999999988 88999999999965 63
No 9
>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans. Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].
Probab=76.71 E-value=2.2 Score=28.56 Aligned_cols=28 Identities=29% Similarity=0.681 Sum_probs=20.5
Q ss_pred HHHHHHHHc-CCCChhHHHHHHhHhhccc
Q 033799 37 DYIGCLKSS-GHQSENCRIFSKKYLECRM 64 (111)
Q Consensus 37 ~Yl~CLk~~-~~~~~~CR~laK~YL~CRM 64 (111)
..-.||+.+ ..-++.|..+-+.|.+|+.
T Consensus 28 t~~~Cl~~~~~~~p~eC~~lr~~f~eCKr 56 (68)
T PF10203_consen 28 TPKDCLKDPSDELPEECQQLRKAFFECKR 56 (68)
T ss_pred CHHHHHcCCCCcCCHHHHHHHHHHHHHhc
Confidence 344455555 4556799999999999985
No 10
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=66.81 E-value=9.8 Score=27.33 Aligned_cols=43 Identities=23% Similarity=0.624 Sum_probs=35.1
Q ss_pred CCCCcccchHHHHHHHHHHHHcCCC--ChhHHHHHHhHhhccccc
Q 033799 24 PLDHMHQCDLEKKDYIGCLKSSGHQ--SENCRIFSKKYLECRMAK 66 (111)
Q Consensus 24 PLDH~gECk~~m~~Yl~CLk~~~~~--~~~CR~laK~YL~CRMd~ 66 (111)
|--..+-|-.+-.+|+.|+...+.. ...|+.+--+|++|-.-.
T Consensus 26 ~~~~~~RC~~FE~e~i~C~~~~G~~r~kKeC~~e~EDy~EClh~~ 70 (96)
T PF10200_consen 26 PYKQPSRCHPFEKEWIECAEAYGQTRGKKECKLELEDYYECLHHT 70 (96)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcccchhhhchhHHhHHHHHHhhH
Confidence 4455688999999999999887543 469999999999997643
No 11
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=63.24 E-value=6 Score=24.67 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=28.2
Q ss_pred ccchHHHHHHHHHHHHcC-CCChhHHHHHHhHhhcc
Q 033799 29 HQCDLEKKDYIGCLKSSG-HQSENCRIFSKKYLECR 63 (111)
Q Consensus 29 gECk~~m~~Yl~CLk~~~-~~~~~CR~laK~YL~CR 63 (111)
..|...+..|..|.+... .....||...++.-+|=
T Consensus 11 ~~C~~~i~~~~~C~~~~~~~~~~~C~~~~~~m~~Cl 46 (69)
T PF08583_consen 11 KKCADEIEAFAECHKDRTFKFVGKCREEKKAMNECL 46 (69)
T ss_pred HHhHHHHHHHHHHHhcchHHHHHhhhHHHHHHHHHH
Confidence 579999999999999853 45578999988888873
No 12
>KOG3057 consensus Cytochrome c oxidase, subunit VIb/COX12 [Energy production and conversion]
Probab=61.22 E-value=14 Score=27.54 Aligned_cols=42 Identities=29% Similarity=0.655 Sum_probs=32.7
Q ss_pred CCCCC-CCCcccchHHHHHHHHHHHHcCCCChhHHHHHHhHhh
Q 033799 20 KGVFP-LDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLE 61 (111)
Q Consensus 20 rGSFP-LDH~gECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~ 61 (111)
-=-|| -..-..|=..-.+|-+|++.++.+...|..+.+.|=+
T Consensus 46 d~RFP~~nqtrhCf~~y~dyhrC~~~~geD~~~Ck~f~~~y~S 88 (112)
T KOG3057|consen 46 DARFPNTNQTRHCFQRYVDYHRCIKAKGEDANPCKKFQKVYRS 88 (112)
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 33455 3444556666679999999999999999999999943
No 13
>KOG4090 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.39 E-value=14 Score=28.99 Aligned_cols=46 Identities=17% Similarity=0.504 Sum_probs=38.1
Q ss_pred CCCCCcccchHHHHHHHHHHHHcCCCChhHHHHHHhHhhcccccCC
Q 033799 23 FPLDHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNA 68 (111)
Q Consensus 23 FPLDH~gECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd~~L 68 (111)
-|----+-|+-+.+.|+.|+..++.|.+.|--+-.--=+|+-.++|
T Consensus 110 q~~q~~~~C~~e~kqF~dCa~~~~~d~slC~~f~e~Lk~Ck~~~~~ 155 (157)
T KOG4090|consen 110 QPAQQQQPCFIEIKQFLDCAQNQGSDISLCEGYNEMLKQCKKNSGL 155 (157)
T ss_pred chhhhcCchHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhcc
Confidence 4444567799999999999999999999999888777788866554
No 14
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=56.80 E-value=8.7 Score=30.92 Aligned_cols=37 Identities=11% Similarity=0.390 Sum_probs=33.1
Q ss_pred CcccchHHHHHHHHHHHHcCCCChhHHHHHHhHhhcc
Q 033799 27 HMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (111)
Q Consensus 27 H~gECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CR 63 (111)
-.-.|......++.|++.|-...-+|-.+++.|-.|-
T Consensus 144 ~~pvCqdlq~qil~Cyr~~p~e~LkC~~lv~af~~Cv 180 (192)
T KOG4083|consen 144 REPVCQDLQAQILRCYRENPGEVLKCSPLVAAFMKCV 180 (192)
T ss_pred cCCcccccHHHHHHHHhcCCCccccccHHHHHHHHHH
Confidence 4456888899999999999889999999999999994
No 15
>PHA03005 sulfhydryl oxidase; Provisional
Probab=52.98 E-value=21 Score=26.04 Aligned_cols=44 Identities=27% Similarity=0.374 Sum_probs=32.4
Q ss_pred CCCCCcc-cchHHHHHHHHHHHHcCCCChhHHHHHHhHhhcccccCCCCcccc
Q 033799 23 FPLDHMH-QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNAQSMHSL 74 (111)
Q Consensus 23 FPLDH~g-ECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd~~LMakdd~ 74 (111)
++.||+- -||..+ |.-|- ----+.||..|+++++ ++|.|+..|.
T Consensus 21 ~~~~~~iE~cK~~l--ytI~~---tLPC~~Cr~HA~~ai~---knnimSs~di 65 (96)
T PHA03005 21 AKLDGNIEACKRKL--YTICS---TLPCPACRRHAKEAIE---KNNIMSSNDL 65 (96)
T ss_pred ccCCCcHHHHHHHH--HHhhh---cCCCHHHHHHHHHHHh---hcCccccCCc
Confidence 5666766 577766 55442 3345799999999998 5999998875
No 16
>PF05051 COX17: Cytochrome C oxidase copper chaperone (COX17); InterPro: IPR007745 Cox17p is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in Saccharomyces cerevisiae [].; GO: 0005507 copper ion binding, 0016531 copper chaperone activity, 0006825 copper ion transport, 0005758 mitochondrial intermembrane space; PDB: 1U97_A 1U96_A 1Z2G_A 2RNB_A 2RN9_A 2LGQ_A 2L0Y_B.
Probab=49.64 E-value=19 Score=23.36 Aligned_cols=18 Identities=17% Similarity=0.501 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHHHcCCC
Q 033799 31 CDLEKKDYIGCLKSSGHQ 48 (111)
Q Consensus 31 Ck~~m~~Yl~CLk~~~~~ 48 (111)
|+.....|-+||+..|.+
T Consensus 31 C~~~Ieahk~Cmr~~GF~ 48 (49)
T PF05051_consen 31 CKELIEAHKACMRGEGFK 48 (49)
T ss_dssp CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999988764
No 17
>KOG3481 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.94 E-value=30 Score=24.85 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=36.7
Q ss_pred ccchHHHHHHHHHHHH--------cCCCChhHHHHHHhHhhccc---ccCCCCcccccccc
Q 033799 29 HQCDLEKKDYIGCLKS--------SGHQSENCRIFSKKYLECRM---AKNAQSMHSLVHWE 78 (111)
Q Consensus 29 gECk~~m~~Yl~CLk~--------~~~~~~~CR~laK~YL~CRM---d~~LMakdd~~nlG 78 (111)
-||+.....|=+|..+ .......|-.|=|.|.+|-- +..+..+.+++.-|
T Consensus 11 ~eCt~lk~~YD~CFn~Wf~eKflKG~~~~~pC~~l~k~Y~~Cv~kal~tk~i~~~~Le~~r 71 (87)
T KOG3481|consen 11 PECTDLKQKYDQCFNEWFSEKFLKGDSSGEPCSRLFKVYKQCVQKALKTKRIFPIGLEEAR 71 (87)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHHHHhhcCCChhhhHHHH
Confidence 4899999999999754 24566799999999999953 34556655554433
No 18
>PF05051 COX17: Cytochrome C oxidase copper chaperone (COX17); InterPro: IPR007745 Cox17p is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in Saccharomyces cerevisiae [].; GO: 0005507 copper ion binding, 0016531 copper chaperone activity, 0006825 copper ion transport, 0005758 mitochondrial intermembrane space; PDB: 1U97_A 1U96_A 1Z2G_A 2RNB_A 2RN9_A 2LGQ_A 2L0Y_B.
Probab=47.69 E-value=32 Score=22.24 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=27.0
Q ss_pred cchHHHHHHHHHHHHcCCCChhHHHHHHhHhhc
Q 033799 30 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLEC 62 (111)
Q Consensus 30 ECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~C 62 (111)
.|.+....==.|+-.|+.++ |+.+-..|-+|
T Consensus 11 aCpetK~aRDeC~l~~g~e~--C~~~Ieahk~C 41 (49)
T PF05051_consen 11 ACPETKKARDECILFNGEED--CKELIEAHKAC 41 (49)
T ss_dssp TSHHHHHHHHHHHHHC-CCC--CHHHHHHHHHH
T ss_pred cChhHHHHhHhhHHhcChHH--HHHHHHHHHHH
Confidence 47888888889999998877 99999999999
No 19
>PLN03079 Uncharacterized protein At4g33100; Provisional
Probab=47.26 E-value=58 Score=23.46 Aligned_cols=36 Identities=25% Similarity=0.539 Sum_probs=29.0
Q ss_pred cchHHHHHHHHHHHHc-------CC-CChhHHHHHHhHhhcccc
Q 033799 30 QCDLEKKDYIGCLKSS-------GH-QSENCRIFSKKYLECRMA 65 (111)
Q Consensus 30 ECk~~m~~Yl~CLk~~-------~~-~~~~CR~laK~YL~CRMd 65 (111)
+|++.+.+|-.|..+= |. ....|..+=++|-+|-..
T Consensus 17 eCtelK~~YD~CFN~WYsEkFLKG~~~~~eC~~~w~~Yq~Cv~~ 60 (91)
T PLN03079 17 PCAELRTAYHNCFNRWYSEKFVKGQWDKEDCVAEWHKYRACLSE 60 (91)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHHHH
Confidence 4999999999998732 22 246899999999999764
No 20
>PF10249 NDUFB10: NADH-ubiquinone oxidoreductase subunit 10; InterPro: IPR019377 NADH-ubiquinone oxidoreductase subunit 10 of (NDUFB10) is a member of a family of conserved proteins of up to 180 residues. It is one of the 41 protein subunits within the hydrophobic fraction of the NADH:ubiquinone oxidoreductase (complex I), a multiprotein complex located in the inner mitochondrial membrane whose main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. NDUFB10 is encoded in the nucleus.
Probab=47.02 E-value=28 Score=26.18 Aligned_cols=26 Identities=27% Similarity=0.640 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCCC-hhHHHHHHhHhh
Q 033799 36 KDYIGCLKSSGHQS-ENCRIFSKKYLE 61 (111)
Q Consensus 36 ~~Yl~CLk~~~~~~-~~CR~laK~YL~ 61 (111)
...-.|...+|.|. .+|+.+.+.|++
T Consensus 68 eRl~~C~~~EG~nh~qnC~~l~~qy~e 94 (128)
T PF10249_consen 68 ERLEACYRREGVNHYQNCRKLVEQYEE 94 (128)
T ss_pred HHHHHHHHHHCcCHhhhhHHHHHHHHH
Confidence 36778999999999 899999999986
No 21
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=42.74 E-value=37 Score=25.36 Aligned_cols=36 Identities=11% Similarity=0.291 Sum_probs=31.6
Q ss_pred CcccchHHHHHHHHHHHHcCCCChhHHHHHHhHhhc
Q 033799 27 HMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLEC 62 (111)
Q Consensus 27 H~gECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~C 62 (111)
|..+|+.+...-..||+.|..-+-.|-.+..++=.|
T Consensus 105 ~~~~v~~aR~~vv~CL~~N~~rPLnCw~EVe~FKk~ 140 (142)
T PF07956_consen 105 NSEEVEKARSAVVRCLRENDGRPLNCWEEVEAFKKE 140 (142)
T ss_pred cchhhHHHHHHHHHHHHHCCCCCCchHHHHHHHHHH
Confidence 667899999999999999999999999998876544
No 22
>KOG3458 consensus NADH:ubiquinone oxidoreductase, NDUFA8/PGIV/19 kDa subunit [Energy production and conversion]
Probab=37.34 E-value=26 Score=27.79 Aligned_cols=37 Identities=24% Similarity=0.458 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHHHHc-CCCChhHHHHHHhHhhccccc
Q 033799 30 QCDLEKKDYIGCLKSS-GHQSENCRIFSKKYLECRMAK 66 (111)
Q Consensus 30 ECk~~m~~Yl~CLk~~-~~~~~~CR~laK~YL~CRMd~ 66 (111)
-|-..|.+|..|+-.. .+.=+.||+..+++=+|--++
T Consensus 77 ~C~~e~~~y~~C~dysst~~f~~Crk~Q~~fdkcv~~k 114 (170)
T KOG3458|consen 77 SCLEEFTKYATCMDYSSTNEFSHCRKEQEAFDKCVPDK 114 (170)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhh
Confidence 5889999999999988 555679999999999997765
No 23
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.18 E-value=19 Score=26.83 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=15.1
Q ss_pred HhHHHHHHHHHHhhhhcccC
Q 033799 92 RMFDELFTYMHQAQKNFYIS 111 (111)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~ 111 (111)
++-+....-++.||+|+||+
T Consensus 88 ~~~~~~~~~~fraQRN~YIs 107 (192)
T PF05529_consen 88 RTEDQVLAKKFRAQRNMYIS 107 (192)
T ss_pred chhHHHHHHHHHHHHhHHHH
Confidence 45555566778999999985
No 24
>KOG4110 consensus NADH:ubiquinone oxidoreductase, NDUFS5/15kDa [Energy production and conversion]
Probab=33.39 E-value=67 Score=24.29 Aligned_cols=52 Identities=23% Similarity=0.521 Sum_probs=43.1
Q ss_pred CCCCCCCCCCccc-chHHHHHHHHHHHHcCC--CChhHHHHHHhHhhcc-cccCCC
Q 033799 18 PEKGVFPLDHMHQ-CDLEKKDYIGCLKSSGH--QSENCRIFSKKYLECR-MAKNAQ 69 (111)
Q Consensus 18 PerGSFPLDH~gE-Ck~~m~~Yl~CLk~~~~--~~~~CR~laK~YL~CR-Md~~LM 69 (111)
-+-++=|+.|-|. |-.+-++++.|...-|. --..|+.+-.++.+|- |++.+|
T Consensus 22 tds~~~p~~~q~r~cg~FE~e~~eC~eayG~~~g~keC~ie~~dFqECv~~qKqmr 77 (120)
T KOG4110|consen 22 TDSTEQPYKHQGRDCGKFEKEWMECAEAYGLERGEKECAIEYDDFQECVLMQKQMR 77 (120)
T ss_pred cccccCccccccccccHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999 99999999999998854 3458999999999995 444433
No 25
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=31.42 E-value=39 Score=23.62 Aligned_cols=24 Identities=29% Similarity=0.794 Sum_probs=15.5
Q ss_pred HHHHHcC--CCChhHHHHHHhHhhcc
Q 033799 40 GCLKSSG--HQSENCRIFSKKYLECR 63 (111)
Q Consensus 40 ~CLk~~~--~~~~~CR~laK~YL~CR 63 (111)
.||+.++ .-.+.|-.+-+.|++|.
T Consensus 31 eCldn~~~~~vPeeC~al~~af~dCK 56 (73)
T KOG4114|consen 31 ECLDNPELKDVPEECIALMKAFLDCK 56 (73)
T ss_pred HHhcCCccccCcHHHHHHHHHHHHHH
Confidence 3444442 25678888888888883
No 26
>PF02320 UCR_hinge: Ubiquinol-cytochrome C reductase hinge protein; InterPro: IPR023184 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex []. The bc1 complex contains 11 subunits; 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Proteins in this entry from an alpha-helical hairpin. This entry represents the structural domain found in these proteins.; PDB: 1BCC_H 1SQP_H 1SQB_H 1BE3_H 2A06_U 1L0L_H 2BCC_H 2FYU_H 1PPJ_U 2YBB_H ....
Probab=29.31 E-value=75 Score=21.00 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=27.8
Q ss_pred ccchHHHHHHHHHHHHc---CCCChhHHHHHHhHhhcc
Q 033799 29 HQCDLEKKDYIGCLKSS---GHQSENCRIFSKKYLECR 63 (111)
Q Consensus 29 gECk~~m~~Yl~CLk~~---~~~~~~CR~laK~YL~CR 63 (111)
.+|+.....|-.|..+. .+..+.|-..--+|+.|.
T Consensus 15 ~~C~~~~~~y~~C~eRV~~~~~~~e~C~ee~fd~~hCv 52 (65)
T PF02320_consen 15 PKCAKLKHHYDECVERVNSRSETKEDCVEEYFDLVHCV 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSSG-SHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 46889999999999986 335579999999999884
No 27
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=28.06 E-value=52 Score=22.83 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.3
Q ss_pred CChhHHHHHHhHhhcccccCCCCcccc
Q 033799 48 QSENCRIFSKKYLECRMAKNAQSMHSL 74 (111)
Q Consensus 48 ~~~~CR~laK~YL~CRMd~~LMakdd~ 74 (111)
--..||..||+=++ ++|.|+.+|.
T Consensus 17 PC~~Cr~HA~~ai~---kNNiMSs~Di 40 (70)
T PF04805_consen 17 PCPECRIHAKEAIQ---KNNIMSSNDI 40 (70)
T ss_pred CCHHHHHHHHHHHH---hcCccccCCc
Confidence 44789999999877 8899999885
No 28
>PF01111 CKS: Cyclin-dependent kinase regulatory subunit; InterPro: IPR000789 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In eukaryotes, cyclin-dependent protein kinases interact with cyclins to regulate cell cycle progression, and are required for the G1 and G2 stages of cell division []. The proteins bind to a regulatory subunit, cyclin-dependent kinase regulatory subunit (CKS), which is essential for their function. This regulatory subunit is a small protein of 79 to 150 residues. In yeast (gene CKS1) and in fission yeast (gene suc1) a single isoform is known, while mammals have two highly related isoforms. The regulatory subunits exist as hexamers, formed by the symmetrical assembly of 3 interlocked homodimers, creating an unusual 12-stranded beta-barrel structure []. Through the barrel centre runs a 12A diameter tunnel, lined by 6 exposed helix pairs []. Six kinase units can be modelled to bind the hexameric structure, which may thus act as a hub for cyclin-dependent protein kinase multimerisation [, ].; GO: 0016538 cyclin-dependent protein kinase regulator activity, 0007049 cell cycle; PDB: 1CKS_C 3QY2_B 1QB3_C 1SCE_B 1PUC_A 1DKS_B 2AST_C 1BUH_B 1DKT_B 2ASS_C.
Probab=27.59 E-value=25 Score=24.08 Aligned_cols=25 Identities=8% Similarity=-0.137 Sum_probs=12.2
Q ss_pred HHhHhhcccccCCCCcccccccccC
Q 033799 56 SKKYLECRMAKNAQSMHSLVHWERD 80 (111)
Q Consensus 56 aK~YL~CRMd~~LMakdd~~nlGf~ 80 (111)
.|+..+---...||+.++|.+||-.
T Consensus 21 pk~~~k~vp~~~llsE~EWR~LGIq 45 (70)
T PF01111_consen 21 PKEIAKLVPKDRLLSEEEWRGLGIQ 45 (70)
T ss_dssp -HHHHGTS-CCS---HHHHHHTT--
T ss_pred CHHHHhhCccCcccCHHHHHhhCCc
Confidence 3444433334479999999999954
No 29
>PF05254 UPF0203: Uncharacterised protein family (UPF0203); InterPro: IPR007918 This is a family of small highly conserved proteins. In Saccharomyces cerevisiae (Baker's yeast) the gene YKL053C-A (MDM35) O60200 from SWISSPROT is one of the genes essential for maintenance of normal mitochondrial distribution and morphology (MDM) []; wherease in Homo sapiens (Human), p53CSV, O43715 from SWISSPROT is a direct transcriptional target for p53 and appears to be a cell-survival mediator in response to genotoxic stress including low-levels of DNA damage. It is suggested that p53CSV modulates the apoptotic pathway through interaction with HSP70 and Apaf-1 thereby inhibiting activation of procaspase-3 and procaspase-9 [].
Probab=25.03 E-value=1.1e+02 Score=20.44 Aligned_cols=37 Identities=24% Similarity=0.563 Sum_probs=28.1
Q ss_pred ccchHHHHHHHHHHHHc-------CC-CChhHHHHHHhHhhcccc
Q 033799 29 HQCDLEKKDYIGCLKSS-------GH-QSENCRIFSKKYLECRMA 65 (111)
Q Consensus 29 gECk~~m~~Yl~CLk~~-------~~-~~~~CR~laK~YL~CRMd 65 (111)
-+|+..+.+|=+|...= |. ....|..+=++|-+|-.+
T Consensus 7 ~eC~~lK~~YD~CFn~WfsekfLkG~~~~~~C~~~~~~Y~~Cv~~ 51 (68)
T PF05254_consen 7 PECTELKEKYDQCFNKWFSEKFLKGDSSDNECGELFKEYQQCVQK 51 (68)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHH
Confidence 37999999999997542 22 335899999999999653
No 30
>PF15628 RRM_DME: RRM in Demeter
Probab=24.33 E-value=32 Score=25.35 Aligned_cols=8 Identities=50% Similarity=1.128 Sum_probs=6.4
Q ss_pred CCCCCCCC
Q 033799 19 EKGVFPLD 26 (111)
Q Consensus 19 erGSFPLD 26 (111)
-||+|||.
T Consensus 11 mrg~FPLn 18 (103)
T PF15628_consen 11 MRGSFPLN 18 (103)
T ss_pred hCCccccC
Confidence 58999983
No 31
>COG5497 Predicted secreted protein [Function unknown]
Probab=24.12 E-value=22 Score=29.29 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=21.0
Q ss_pred cccccccccCCCCchhhhhHHHhHH
Q 033799 71 MHSLVHWERDNKGTIWALLNYRMFD 95 (111)
Q Consensus 71 kdd~~nlGf~~~~~~~~~~~~~~~~ 95 (111)
...++++||+++|+..+.--|-..|
T Consensus 21 ~a~~~~lGFS~dG~~Faf~~yG~~d 45 (228)
T COG5497 21 DAAFKNLGFSPDGRYFAFAEYGEQD 45 (228)
T ss_pred ceeeEEeeeccCCCEEeehhccccc
Confidence 3468999999999999888777766
No 32
>PLN00010 cyclin-dependent kinases regulatory subunit; Provisional
Probab=22.14 E-value=29 Score=24.86 Aligned_cols=21 Identities=10% Similarity=0.049 Sum_probs=15.9
Q ss_pred ccCCCCcccccccccCCCCchh
Q 033799 65 AKNAQSMHSLVHWERDNKGTIW 86 (111)
Q Consensus 65 d~~LMakdd~~nlGf~~~~~~~ 86 (111)
...||+.++|..||-.- ++-|
T Consensus 32 k~~LL~E~EWR~LGIqq-S~GW 52 (86)
T PLN00010 32 KNRLLSENEWRAIGVQQ-SRGW 52 (86)
T ss_pred cCcccCHHHHHHhcccc-CCCc
Confidence 45799999999999753 3334
No 33
>PF06924 DUF1281: Protein of unknown function (DUF1281); InterPro: IPR009694 This family consists of several hypothetical enterobacterial proteins of around 170 residues in length. Members of this family are found in Escherichia coli, Salmonella typhimurium and Shigella species. The function of this family is unknown.; PDB: 2IJR_A.
Probab=21.85 E-value=99 Score=23.69 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHc-CCCChhHHHHHHhHhhcccccCCCCcccccccccCCCCchhhhhHHHhHH
Q 033799 34 EKKDYIGCLKSS-GHQSENCRIFSKKYLECRMAKNAQSMHSLVHWERDNKGTIWALLNYRMFD 95 (111)
Q Consensus 34 ~m~~Yl~CLk~~-~~~~~~CR~laK~YL~CRMd~~LMakdd~~nlGf~~~~~~~~~~~~~~~~ 95 (111)
+...++.+|++. --+.+.||.+-+=|++=-. +---|++|=.....+|-.|+....+|
T Consensus 72 AF~~Wl~lL~~~~~Ld~~~~~~i~~l~~QSGi-----~~~~We~lp~~ar~~I~~L~~~~~~D 129 (134)
T PF06924_consen 72 AFTQWLGLLQKDVWLDPETCRRIHRLWLQSGI-----GARRWENLPEAARQIIAQLLARQYAD 129 (134)
T ss_dssp HHHHHHHHHHTT-B-SSHHHHHHHHHHHTT-G-----GG--TTSS-SHHHHHHHHHHHHTHHH
T ss_pred cHHHHHHHHHhCCcCCHHHHHHHHHHHHHcCc-----cccccccCCHHHHHHHHHHHHhhhcc
Confidence 457889999998 7788999999999998554 34579999999999999999888877
No 34
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=20.73 E-value=3.3e+02 Score=24.24 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=42.5
Q ss_pred ccchHHHHHHHHHHHHcCCCC-hhH----HHHHHhH-------hhcccccCC--------CCcccccccccCCCCchhh-
Q 033799 29 HQCDLEKKDYIGCLKSSGHQS-ENC----RIFSKKY-------LECRMAKNA--------QSMHSLVHWERDNKGTIWA- 87 (111)
Q Consensus 29 gECk~~m~~Yl~CLk~~~~~~-~~C----R~laK~Y-------L~CRMd~~L--------Makdd~~nlGf~~~~~~~~- 87 (111)
.|-...+..|-.-||...++. ..- ...|+.= -+-||+++= -+.||..+ ||+.+-+..+
T Consensus 116 ~EYeaEKieY~~smkayh~sp~y~ayinaKsra~a~le~~sr~~~sr~~~ge~~~~IQPaeDeDD~dd-g~stkhla~ar 194 (410)
T KOG4715|consen 116 NEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDEDDYDD-GFSTKHLATAR 194 (410)
T ss_pred HHHHHHHHHHHHHHHHhhCCchHHHHhhhhhhhhhhhccccccccchhhcCCcceecccccCcccccc-ccchhhhhhhh
Confidence 344556668888888764332 222 1222222 235777654 44566654 8998887766
Q ss_pred -hhHHHhHHHHHH
Q 033799 88 -LLNYRMFDELFT 99 (111)
Q Consensus 88 -~~~~~~~~~~~~ 99 (111)
+-|+|...|||.
T Consensus 195 f~rN~rLIsei~S 207 (410)
T KOG4715|consen 195 FQRNHRLISEILS 207 (410)
T ss_pred hhhhhHHHHHHhc
Confidence 469999999984
Done!