Query 033799
Match_columns 111
No_of_seqs 104 out of 150
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 10:29:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ei0_A P8MTCP1; helix-turn-hel 95.4 0.018 6.1E-07 34.0 3.6 34 30-63 2-35 (38)
2 2lql_A Coiled-coil-helix-coile 94.9 0.01 3.6E-07 41.7 1.8 38 29-66 59-96 (113)
3 1hp8_A HU-P8; leukemia, cystei 94.6 0.029 1E-06 37.2 3.3 37 29-65 5-41 (68)
4 2lqt_A Coiled-coil-helix-coile 87.3 0.58 2E-05 32.2 3.6 35 29-63 14-48 (85)
5 2lql_A Coiled-coil-helix-coile 78.5 0.71 2.4E-05 32.3 1.2 45 25-69 8-54 (113)
6 3idw_A Actin cytoskeleton-regu 73.4 1.2 4E-05 29.9 1.1 46 45-91 12-60 (72)
7 1u96_A Cytochrome C oxidase co 59.5 12 0.00042 24.8 4.0 46 26-82 21-66 (69)
8 1v54_H AED, cytochrome C oxida 55.2 18 0.0006 24.2 4.2 46 16-61 13-62 (85)
9 1u96_A Cytochrome C oxidase co 53.3 9.4 0.00032 25.3 2.6 21 29-49 45-65 (69)
10 1pp9_H Ubiquinol-cytochrome C 26.0 52 0.0018 21.7 2.8 35 29-63 28-65 (78)
11 1cks_A Cyclin-dependent kinase 24.9 13 0.00046 25.1 -0.3 15 66-80 35-49 (79)
12 1ejp_A Syndecan-4; symmetric-p 22.3 32 0.0011 19.4 1.0 10 18-27 5-14 (28)
No 1
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=95.37 E-value=0.018 Score=33.97 Aligned_cols=34 Identities=15% Similarity=0.491 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHHHHcCCCChhHHHHHHhHhhcc
Q 033799 30 QCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (111)
Q Consensus 30 ECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CR 63 (111)
-|+.+...+..||.+|+++.++|..+...|=+|-
T Consensus 2 pC~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 2 PCQKQAAEIQKCLQANSYLESKCQAVIQELKKCA 35 (38)
T ss_dssp CSHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999888874
No 2
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=94.86 E-value=0.01 Score=41.74 Aligned_cols=38 Identities=18% Similarity=0.516 Sum_probs=34.4
Q ss_pred ccchHHHHHHHHHHHHcCCCChhHHHHHHhHhhccccc
Q 033799 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAK 66 (111)
Q Consensus 29 gECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd~ 66 (111)
..|.+.+..|-.||+.|+.+-.+||..-+.+.+|-=+.
T Consensus 59 ~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~Cae~v 96 (113)
T 2lql_A 59 QACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCAEQV 96 (113)
T ss_dssp HHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999997433
No 3
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=94.57 E-value=0.029 Score=37.16 Aligned_cols=37 Identities=14% Similarity=0.416 Sum_probs=34.2
Q ss_pred ccchHHHHHHHHHHHHcCCCChhHHHHHHhHhhcccc
Q 033799 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMA 65 (111)
Q Consensus 29 gECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd 65 (111)
.-|+.+...+..||.+|+++.++|..+-..|=+|+-.
T Consensus 5 dPC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~~ 41 (68)
T 1hp8_A 5 DPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQ 41 (68)
T ss_dssp CTTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999999999999853
No 4
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=87.26 E-value=0.58 Score=32.21 Aligned_cols=35 Identities=26% Similarity=0.601 Sum_probs=32.9
Q ss_pred ccchHHHHHHHHHHHHcCCCChhHHHHHHhHhhcc
Q 033799 29 HQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (111)
Q Consensus 29 gECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CR 63 (111)
.-|.++-..-++||.+|+.+-+.|..+=.+|=+|+
T Consensus 14 nPC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CK 48 (85)
T 2lqt_A 14 NPCLSESDASTRCLDENNYDRERCSTYFLRYKNCR 48 (85)
T ss_dssp CCCHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999995
No 5
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=78.49 E-value=0.71 Score=32.31 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=31.8
Q ss_pred CCCcc-cchHHHHHHHHHHHHcC-CCChhHHHHHHhHhhcccccCCC
Q 033799 25 LDHMH-QCDLEKKDYIGCLKSSG-HQSENCRIFSKKYLECRMAKNAQ 69 (111)
Q Consensus 25 LDH~g-ECk~~m~~Yl~CLk~~~-~~~~~CR~laK~YL~CRMd~~LM 69 (111)
++|-+ .|.....+|+.|..+|. .+...|..+.++==.|-.++.++
T Consensus 8 ~~~vak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~~p~~ 54 (113)
T 2lql_A 8 LEVTARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHPII 54 (113)
T ss_dssp ------CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 45666 59999999999999884 45778988888888886554443
No 6
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=73.37 E-value=1.2 Score=29.89 Aligned_cols=46 Identities=13% Similarity=0.264 Sum_probs=40.9
Q ss_pred cCCCChhHHHHHHhHhhcccccCCC---CcccccccccCCCCchhhhhHH
Q 033799 45 SGHQSENCRIFSKKYLECRMAKNAQ---SMHSLVHWERDNKGTIWALLNY 91 (111)
Q Consensus 45 ~~~~~~~CR~laK~YL~CRMd~~LM---akdd~~nlGf~~~~~~~~~~~~ 91 (111)
-|.....|..+|+.+-+=||+...+ .++-+.+||.. +|-|.+++.|
T Consensus 12 aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~-eGDIIrVmk~ 60 (72)
T 3idw_A 12 CGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLR-EGDIVRVMKH 60 (72)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCC-HHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHcCCc-hhhHHHHHHH
Confidence 4788899999999999999999764 68889999996 8999999876
No 7
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=59.52 E-value=12 Score=24.75 Aligned_cols=46 Identities=28% Similarity=0.556 Sum_probs=37.2
Q ss_pred CCcccchHHHHHHHHHHHHcCCCChhHHHHHHhHhhcccccCCCCcccccccccCCC
Q 033799 26 DHMHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNAQSMHSLVHWERDNK 82 (111)
Q Consensus 26 DH~gECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd~~LMakdd~~nlGf~~~ 82 (111)
.-==.|....+.==.|+-.++.++.+|..+-..|.+| +..+||+-+
T Consensus 21 KpCCaCpetK~aRDeCil~~gee~~~C~~lIeahk~C-----------Mr~~GF~v~ 66 (69)
T 1u96_A 21 KPCCVCKPEKEERDTCILFNGQDSEKCKEFIEKYKEC-----------MKGYGFEVP 66 (69)
T ss_dssp CCCTTSSHHHHHHHHHHHHSCSCSGGGHHHHHHHHHH-----------HHTTTCCCC
T ss_pred CcCeeCcchhhHHHHHHHhcCCcHHHHHHHHHHHHHH-----------HHHcCCCCC
Confidence 3445688888888899999998888999999999998 456777643
No 8
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=55.17 E-value=18 Score=24.18 Aligned_cols=46 Identities=22% Similarity=0.480 Sum_probs=35.3
Q ss_pred CCCCCCCCC-CCCcccchHHHHHHHHHHHH---cCCCChhHHHHHHhHhh
Q 033799 16 VPPEKGVFP-LDHMHQCDLEKKDYIGCLKS---SGHQSENCRIFSKKYLE 61 (111)
Q Consensus 16 tPPerGSFP-LDH~gECk~~m~~Yl~CLk~---~~~~~~~CR~laK~YL~ 61 (111)
|+|--=.|| -.---.|=..-..|..|++. +|.+.+.|..+-+.|-+
T Consensus 13 tap~D~rFPn~nq~k~Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~s 62 (85)
T 1v54_H 13 TAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKS 62 (85)
T ss_dssp SCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHH
T ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 344444577 34456788888999999665 99999999999999854
No 9
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=53.34 E-value=9.4 Score=25.34 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.5
Q ss_pred ccchHHHHHHHHHHHHcCCCC
Q 033799 29 HQCDLEKKDYIGCLKSSGHQS 49 (111)
Q Consensus 29 gECk~~m~~Yl~CLk~~~~~~ 49 (111)
.+|+..+..|-.||+..|.+-
T Consensus 45 ~~C~~lIeahk~CMr~~GF~v 65 (69)
T 1u96_A 45 EKCKEFIEKYKECMKGYGFEV 65 (69)
T ss_dssp GGGHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999987653
No 10
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Probab=25.98 E-value=52 Score=21.66 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=28.5
Q ss_pred ccchHHHHHHHHHHHHcCC---CChhHHHHHHhHhhcc
Q 033799 29 HQCDLEKKDYIGCLKSSGH---QSENCRIFSKKYLECR 63 (111)
Q Consensus 29 gECk~~m~~Yl~CLk~~~~---~~~~CR~laK~YL~CR 63 (111)
..|...+..|-.|..+... ....|-..--+|+.|+
T Consensus 28 ~~C~~~~~~y~~C~eRV~s~~~~~e~C~ee~fd~~hCv 65 (78)
T 1pp9_H 28 EKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHAR 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4688999999999998733 3468999988999885
No 11
>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo sapiens} SCOP: d.97.1.1 PDB: 1buh_B 1dks_A 1dkt_A* 2ast_C* 2ass_C*
Probab=24.90 E-value=13 Score=25.07 Aligned_cols=15 Identities=7% Similarity=-0.104 Sum_probs=13.1
Q ss_pred cCCCCcccccccccC
Q 033799 66 KNAQSMHSLVHWERD 80 (111)
Q Consensus 66 ~~LMakdd~~nlGf~ 80 (111)
..||+.++|.+||-.
T Consensus 35 ~~LlsE~EWR~LGIq 49 (79)
T 1cks_A 35 THLMSEEEWRRLGVQ 49 (79)
T ss_dssp SSCCCHHHHHHHTCC
T ss_pred ccccCHHHHHHhCcc
Confidence 479999999999964
No 12
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=22.30 E-value=32 Score=19.36 Aligned_cols=10 Identities=20% Similarity=0.601 Sum_probs=8.6
Q ss_pred CCCCCCCCCC
Q 033799 18 PEKGVFPLDH 27 (111)
Q Consensus 18 PerGSFPLDH 27 (111)
-|.|||.||.
T Consensus 5 KDEGSY~Lde 14 (28)
T 1ejp_A 5 KDEGSYDLGK 14 (28)
T ss_dssp CCCCCCCCCS
T ss_pred ccccccccCC
Confidence 4789999996
Done!