Query 033799
Match_columns 111
No_of_seqs 104 out of 150
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 10:29:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033799.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033799hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hp8a_ a.17.1.1 (A:) p8-MTCP1 74.4 1.6 0.00012 27.4 3.6 33 31-63 7-39 (68)
2 d1u97a_ a.17.1.2 (A:) Cytochro 65.8 3 0.00022 26.2 3.5 44 28-82 23-66 (69)
3 d1u97a_ a.17.1.2 (A:) Cytochro 36.9 11 0.00082 23.4 2.5 21 29-49 45-65 (69)
4 d1ppjh_ f.28.1.1 (H:) Non-heme 31.8 17 0.0012 21.9 2.7 35 29-63 16-53 (66)
5 d1cksa_ d.97.1.1 (A:) CksHs2 { 25.6 5.9 0.00043 25.0 -0.3 16 65-80 33-48 (74)
6 d2e9xd1 a.278.1.4 (D:21-165) G 22.0 12 0.00089 25.3 0.7 17 50-66 63-79 (145)
7 d1v54h_ a.51.1.1 (H:) Cytochro 18.9 79 0.0058 19.6 4.2 46 16-61 7-56 (79)
8 d2k0bx1 a.5.2.1 (X:1-52) Seque 17.2 16 0.0011 21.7 0.3 13 73-85 16-28 (52)
9 d1qb3a_ d.97.1.1 (A:) cks1 {Ba 15.4 15 0.0011 24.5 -0.0 15 66-80 61-75 (113)
10 d1t35a_ c.129.1.1 (A:) Hypothe 14.0 34 0.0025 22.7 1.5 33 73-107 119-152 (179)
No 1
>d2hp8a_ a.17.1.1 (A:) p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.44 E-value=1.6 Score=27.39 Aligned_cols=33 Identities=15% Similarity=0.473 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHcCCCChhHHHHHHhHhhcc
Q 033799 31 CDLEKKDYIGCLKSSGHQSENCRIFSKKYLECR 63 (111)
Q Consensus 31 Ck~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CR 63 (111)
|+...=..-.||+.|+.+.++|...-.+--+|=
T Consensus 7 Ck~~AC~IQ~CLq~N~Y~EskC~~~i~~L~~CC 39 (68)
T d2hp8a_ 7 CQKQACEIQKCLQANSYMESKCQAVIQELRKCC 39 (68)
T ss_dssp THHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 888888999999999999999999988876663
No 2
>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=65.79 E-value=3 Score=26.20 Aligned_cols=44 Identities=30% Similarity=0.585 Sum_probs=36.1
Q ss_pred cccchHHHHHHHHHHHHcCCCChhHHHHHHhHhhcccccCCCCcccccccccCCC
Q 033799 28 MHQCDLEKKDYIGCLKSSGHQSENCRIFSKKYLECRMAKNAQSMHSLVHWERDNK 82 (111)
Q Consensus 28 ~gECk~~m~~Yl~CLk~~~~~~~~CR~laK~YL~CRMd~~LMakdd~~nlGf~~~ 82 (111)
==.|+.....==.|+-.++.++.+|..+-..|.+| +..+||.-+
T Consensus 23 CCaCpetK~aRDeCil~~ge~~~~C~~lIeahk~C-----------Mr~~GF~v~ 66 (69)
T d1u97a_ 23 CCVCKPEKEERDTCILFNGQDSEKCKEFIEKYKEC-----------MKGYGFEVP 66 (69)
T ss_dssp CSCCHHHHHHHHHHHHHTCTTSTTSHHHHHHHHHH-----------HHHHTCSSC
T ss_pred cccCchhhhHhhHHHHhcCCcHHHHHHHHHHHHHH-----------HHHcCCCCC
Confidence 35688888888899999999888999999999998 456677644
No 3
>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.89 E-value=11 Score=23.42 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.1
Q ss_pred ccchHHHHHHHHHHHHcCCCC
Q 033799 29 HQCDLEKKDYIGCLKSSGHQS 49 (111)
Q Consensus 29 gECk~~m~~Yl~CLk~~~~~~ 49 (111)
.+|+..+..|-.||+.-|.+-
T Consensus 45 ~~C~~lIeahk~CMr~~GF~v 65 (69)
T d1u97a_ 45 EKCKEFIEKYKECMKGYGFEV 65 (69)
T ss_dssp TTSHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 459999999999999987653
No 4
>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=31.77 E-value=17 Score=21.92 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=28.5
Q ss_pred ccchHHHHHHHHHHHHc---CCCChhHHHHHHhHhhcc
Q 033799 29 HQCDLEKKDYIGCLKSS---GHQSENCRIFSKKYLECR 63 (111)
Q Consensus 29 gECk~~m~~Yl~CLk~~---~~~~~~CR~laK~YL~CR 63 (111)
..|......|-.|..+. +...+.|...-=+|+.|+
T Consensus 16 ~~C~~~~~~~~eC~eRV~~~~~~~E~C~eE~fd~~hc~ 53 (66)
T d1ppjh_ 16 EKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHAR 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 36889999999999986 344457999999999885
No 5
>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.64 E-value=5.9 Score=24.99 Aligned_cols=16 Identities=6% Similarity=-0.105 Sum_probs=13.8
Q ss_pred ccCCCCcccccccccC
Q 033799 65 AKNAQSMHSLVHWERD 80 (111)
Q Consensus 65 d~~LMakdd~~nlGf~ 80 (111)
...||+.++|.+||-.
T Consensus 33 k~~LlsE~EWR~LGIq 48 (74)
T d1cksa_ 33 KTHLMSEEEWRRLGVQ 48 (74)
T ss_dssp SSSCCCHHHHHHHTCC
T ss_pred CccccCHHHHHHhCcc
Confidence 4569999999999975
No 6
>d2e9xd1 a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.03 E-value=12 Score=25.27 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=14.6
Q ss_pred hhHHHHHHhHhhccccc
Q 033799 50 ENCRIFSKKYLECRMAK 66 (111)
Q Consensus 50 ~~CR~laK~YL~CRMd~ 66 (111)
+..|=+-++||.||+.+
T Consensus 63 eRikfllrsYLR~RL~K 79 (145)
T d2e9xd1 63 ERIRYVLSSYLRCRLMK 79 (145)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788889999999976
No 7
>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.92 E-value=79 Score=19.60 Aligned_cols=46 Identities=22% Similarity=0.480 Sum_probs=34.9
Q ss_pred CCCCCCCCC-CCCcccchHHHHHHHHHHH---HcCCCChhHHHHHHhHhh
Q 033799 16 VPPEKGVFP-LDHMHQCDLEKKDYIGCLK---SSGHQSENCRIFSKKYLE 61 (111)
Q Consensus 16 tPPerGSFP-LDH~gECk~~m~~Yl~CLk---~~~~~~~~CR~laK~YL~ 61 (111)
|+|----|| -.----|-.--.+|-.|.| ..|.+.+.|..+.+-|-+
T Consensus 7 TaP~D~RFPn~NQTrhC~~~Y~dyhrC~K~~~~kGed~~~C~~f~~~y~s 56 (79)
T d1v54h_ 7 TAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKS 56 (79)
T ss_dssp SCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHH
T ss_pred CCCCCccCCcchhhHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 445445577 5556678888889999965 459999999999998843
No 8
>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.23 E-value=16 Score=21.67 Aligned_cols=13 Identities=8% Similarity=0.187 Sum_probs=10.0
Q ss_pred cccccccCCCCch
Q 033799 73 SLVHWERDNKGTI 85 (111)
Q Consensus 73 d~~nlGf~~~~~~ 85 (111)
.+..+||+|||--
T Consensus 16 qM~aMGFsneGGW 28 (52)
T d2k0bx1 16 QMLSMGFSDEGGW 28 (52)
T ss_dssp HHHHHTCCCSSSC
T ss_pred HHHHcCCCCcchH
Confidence 3567999999864
No 9
>d1qb3a_ d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.36 E-value=15 Score=24.55 Aligned_cols=15 Identities=0% Similarity=-0.265 Sum_probs=13.0
Q ss_pred cCCCCcccccccccC
Q 033799 66 KNAQSMHSLVHWERD 80 (111)
Q Consensus 66 ~~LMakdd~~nlGf~ 80 (111)
..||+.++|.+||-.
T Consensus 61 ~rLLtE~EWR~LGIq 75 (113)
T d1qb3a_ 61 LRILTEDEWRGLGIT 75 (113)
T ss_dssp BCCCCHHHHHHTTCC
T ss_pred cccCCHHHHHHhCcc
Confidence 359999999999975
No 10
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}
Probab=14.01 E-value=34 Score=22.69 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=23.9
Q ss_pred cccccccCCCCchhhhhHHH-hHHHHHHHHHHhhhh
Q 033799 73 SLVHWERDNKGTIWALLNYR-MFDELFTYMHQAQKN 107 (111)
Q Consensus 73 d~~nlGf~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 107 (111)
.|.+||.+++ -..|+|.. .+|.|..++.+..++
T Consensus 119 ~~~ql~~~~k--Piil~n~~gfw~~l~~~l~~~~~~ 152 (179)
T d1t35a_ 119 CWAQIGIHQK--PIGLYNVNGYFEPMMKMVKYSIQE 152 (179)
T ss_dssp HTTSCSSCCC--CEEEECGGGTTHHHHHHHHHHHHT
T ss_pred HHHHhhccCC--CeEeecCCccHHHHHHHHHHHHHc
Confidence 3677888876 44577876 789999888776544
Done!