BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033800
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9
PE=2 SV=1
Length = 372
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 66/109 (60%), Gaps = 9/109 (8%)
Query: 5 WAIQPSYSTLSISTSRFSAESSGTD--SFGSRMSPITGGEASCHSPDLD----SPHLEAR 58
+A +P++S +S S + ESS D G+ S GE + P L H R
Sbjct: 258 FASKPAHSNISFSG--VTGESSAGDFQECGASSSIQLSGEPPWYPPTLQDNNACSHSVTR 315
Query: 59 ENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKT-EGYDSD 106
NA+MRYKEKKKAR+ DK+++Y SRKARAD R+RV+GRF+K E YD D
Sbjct: 316 NNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYD 364
>sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana
GN=COL10 PE=1 SV=1
Length = 373
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 45 CHSPDLD---SPHLEARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKT- 100
CH D S H R NA+MRYKEKKKAR+ DK+++Y SRK RAD R+RV+GRF+K+
Sbjct: 300 CHPTAQDIIASSHATTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 359
Query: 101 EGYDSD 106
E YD D
Sbjct: 360 EAYDYD 365
>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana
GN=COL14 PE=2 SV=2
Length = 402
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 36/44 (81%)
Query: 56 EARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
+ R+NAM RYKEKKK RR DK I+Y +RKARA+ R RV+GRF+K
Sbjct: 355 QNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVK 398
>sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana
GN=COL12 PE=2 SV=2
Length = 364
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 56 EARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKT-EGYDSDATDVT 111
+AR A +RYKEKK R KQI+Y SRKARAD RKRV+GRF+K + YD D + T
Sbjct: 305 QARNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKAGDSYDYDPSSPT 361
>sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana
GN=COL15 PE=2 SV=1
Length = 433
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 35/44 (79%)
Query: 56 EARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
+ R +AM RYKEK+K RR DK I+Y SRKARAD R RV+GRF+K
Sbjct: 383 QNRGDAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVK 426
>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana
GN=COL13 PE=2 SV=1
Length = 332
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 11 YSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDLDSPHLEA------------R 58
Y +L + S + D S M P++G C + P + + R
Sbjct: 228 YCSLLKNLSESDEKPENVDRESSVMVPVSGCLNRCEEETVMVPVITSTRSMTHEINSLER 287
Query: 59 ENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
+A+ RYKEKKK+RR +K I+Y SRK RA++R R++GRF K
Sbjct: 288 NSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAK 328
>sp|Q9FDX8|HD1_ORYSJ Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1 PE=2
SV=1
Length = 395
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 34/42 (80%)
Query: 58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
RE ++RY+EKKKAR+ +K I+Y +RKA A+AR R++GRF K
Sbjct: 326 REARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAK 367
>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1
PE=1 SV=1
Length = 355
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEGYDSDAT 108
RE ++RY+EKKK R+ +K I+Y SRKA A+ R R++GRF K + D +A
Sbjct: 286 REARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEAN 336
>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2
PE=1 SV=1
Length = 347
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
RE ++RY+EKKK R+ DK I+Y SRKA A+ R R++GRF K
Sbjct: 278 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAK 319
>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4
PE=2 SV=2
Length = 362
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 15/75 (20%)
Query: 25 SSGTDSFGSRMSPITGGEASCHSPDLDSPHLEARENAMMRYKEKKKARRQDKQIQYPSRK 84
+SG D R P+T E RE +MRY+EK+K R+ +K I+Y SRK
Sbjct: 277 TSGADPGTQRAVPLTSAE---------------REARVMRYREKRKNRKFEKTIRYASRK 321
Query: 85 ARADARKRVQGRFLK 99
A A+ R R++GRF K
Sbjct: 322 AYAEMRPRIKGRFAK 336
>sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis
thaliana GN=COL11 PE=3 SV=2
Length = 330
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 13 TLSISTSRFSAESSGTDSFGSRMSP-ITGGEASCHSPDLDSPHLEARENAMMRYKEKKKA 71
+S+S S + ES+ TD +SP G++ S S + + R+ A RYK+KK
Sbjct: 230 NMSLSMSNLTGESNATDYQDCGISPGFLIGDSPWESNVEVSFNPKLRDEAKKRYKQKKSK 289
Query: 72 RRQDKQIQYPSRKARADARKRVQGRFLKT-EGYDSDATDV 110
R KQI+Y SRKARAD RKRV+GRF+K+ E ++ D + V
Sbjct: 290 RMFGKQIRYASRKARADTRKRVKGRFVKSGETFEYDPSLV 329
>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1
SV=1
Length = 373
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTE 101
RE ++RY+EK+K R+ +K I+Y SRKA A+ R RV GRF K E
Sbjct: 306 REARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKRE 349
>sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5
PE=2 SV=2
Length = 355
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
RE ++RY+EK+K R+ +K I+Y SRKA A++R R++GRF K
Sbjct: 285 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAK 326
>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3
PE=1 SV=1
Length = 294
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 10 SYSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDLDSPHLEA----RENAMMRY 65
S S +S F ++ T + + P +GG + + ++P ++ RE ++RY
Sbjct: 178 SASKISQQGFNFINQTVSTRTIDVPLVPESGG-VTAEMTNTETPAVQLSPAEREARVLRY 236
Query: 66 KEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
+EK+K R+ +K I+Y SRKA A+ R R++GRF K
Sbjct: 237 REKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAK 270
>sp|Q9LU68|CIA2_ARATH Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana
GN=CIA2 PE=2 SV=1
Length = 435
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
RE +++RYKEK++ R K+I+Y RK AD R R++GRF++
Sbjct: 383 REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVR 424
>sp|Q8L500|APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana
GN=APRR9 PE=2 SV=2
Length = 468
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Query: 58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEGYDSDAT 108
RE A+M+++ K+K R DK+++Y SRK A+ R RV+G+F++T +SDA+
Sbjct: 417 REAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRT--VNSDAS 465
>sp|Q9C9A9|COL7_ARATH Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana GN=COL7
PE=2 SV=1
Length = 392
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
RE ++RYKEK++ R K+I+Y RK A+ R R++GRF+K
Sbjct: 345 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVK 386
>sp|Q689G6|PRR95_ORYSJ Two-component response regulator-like PRR95 OS=Oryza sativa subsp.
japonica GN=PRR95 PE=2 SV=1
Length = 623
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 2 DSPWAIQP----SYSTLSISTSRFSAESSGTDSFGSRM-SPITGGEASCHSPDLDSPHLE 56
D P + P S S+ + ++R + S DS + M +P +PD HL
Sbjct: 514 DEPRHVSPTTGESGSSTVLDSARKTLSGSVCDSSSNHMIAPTESSNVVPENPD-GLRHLS 572
Query: 57 ARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
RE A+ +++ K+K R +K+++Y SRK A+ R RV+G+F++
Sbjct: 573 QREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFVR 615
>sp|Q9LKL2|APRR1_ARATH Two-component response regulator-like APRR1 OS=Arabidopsis thaliana
GN=APRR1 PE=1 SV=1
Length = 618
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 55 LEARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFL-KTEGYDSD 106
L+ RE A+++++ K+ R DK+I+Y +RK A+ R RV+G+F+ K G + D
Sbjct: 530 LDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVD 582
>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana
GN=APRR7 PE=2 SV=1
Length = 727
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 51 DSPHLEARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEGYDSDATDV 110
D + RE A+ ++++K+K R K+++Y SRK A+ R RV+G+F++ +D D+
Sbjct: 662 DENKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKTAAATDDNDI 721
>sp|Q689G9|PRR1_ORYSJ Two-component response regulator-like PRR1 OS=Oryza sativa subsp.
japonica GN=PRR1 PE=2 SV=2
Length = 518
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 56 EARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEGYDSDATDVT 111
E R A+ +++ K+K R DK+++Y +RK A+ R RV+G+F++ Y TD+T
Sbjct: 441 ERRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFVRQANY----TDIT 492
>sp|A2XFB7|PRR73_ORYSI Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
indica GN=PRR73 PE=2 SV=2
Length = 767
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEGYDSDA 107
RE A+ ++++K+K R K+++Y SRK A+ R R++G+F++ G + A
Sbjct: 712 REAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQEDQA 761
>sp|Q10N34|PRR73_ORYSJ Two-component response regulator-like PRR73 OS=Oryza sativa subsp.
japonica GN=PRR73 PE=2 SV=1
Length = 767
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEGYDSDA 107
RE A+ ++++K+K R K+++Y SRK A+ R R++G+F++ G + A
Sbjct: 712 REAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQEDQA 761
>sp|Q9M9B3|COL8_ARATH Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana GN=COL8
PE=2 SV=2
Length = 319
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
RE + RY++K+K R +K+I+Y RK AD R R++GRF++
Sbjct: 271 REARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVR 312
>sp|Q8RWD0|COL16_ARATH Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana
GN=COL16 PE=2 SV=2
Length = 417
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 57 ARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
RE + RY+EK++ R K+I+Y RK A+ R R++GRF+K
Sbjct: 360 GREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 402
>sp|Q8LG76|COL6_ARATH Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6
PE=2 SV=2
Length = 406
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 57 ARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
RE + RY+EK++ R K+I+Y RK A+ R R++GRF+K
Sbjct: 356 GREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 398
>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana
GN=APRR3 PE=1 SV=1
Length = 495
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 31/42 (73%)
Query: 58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
RE A+M+++ K+K R +K+++Y SRK A+ R V+G+F++
Sbjct: 442 REAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIR 483
>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
japonica GN=PRR37 PE=2 SV=1
Length = 742
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 56 EARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
E R A++++++K+K R K+++Y SRK A+ R RV+G+F++
Sbjct: 680 EHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVR 723
>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp.
indica GN=PRR37 PE=2 SV=2
Length = 742
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 56 EARENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
E R A++++++K+K R K+++Y SRK A+ R RV+G+F++
Sbjct: 680 EHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVR 723
>sp|Q6LA42|APRR5_ARATH Two-component response regulator-like APRR5 OS=Arabidopsis thaliana
GN=APRR5 PE=1 SV=2
Length = 558
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 31/42 (73%)
Query: 58 RENAMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLK 99
RE A+ +++ K+K R +K+++Y SRK A+ R R++G+F++
Sbjct: 509 REAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVR 550
>sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2
SV=1
Length = 302
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 16/76 (21%)
Query: 48 PDLDSPH----------------LEARENAMMRYKEKKKARRQDKQIQYPSRKARADARK 91
P L SPH + R +++R++EK+K R DK+I+Y RK A +
Sbjct: 121 PGLGSPHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQ 180
Query: 92 RVQGRFLKTEGYDSDA 107
R +G+F + + +A
Sbjct: 181 RNKGQFTSAKSNNDEA 196
>sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2
SV=2
Length = 297
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 61 AMMRYKEKKKARRQDKQIQYPSRKARADARKRVQGRFLKTEGYDSDA 107
+++R++EK+K R DK I+Y RK A +R +G+F + + D+
Sbjct: 146 SLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDS 192
>sp|Q91YH5|ATLA3_MOUSE Atlastin-3 OS=Mus musculus GN=Atl3 PE=2 SV=1
Length = 541
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 29 DSFGSRMSPITGGEASCHSPD-LDSPHLEARENAMMRYKEKKKARRQDKQIQY 80
D + + M I GGE SPD L+ HLE ++ A+ +K+ KK +D +Y
Sbjct: 361 DIYYNNMEEICGGEKPYLSPDILEEKHLEFKQLALDHFKKIKKMGGKDFSFRY 413
>sp|Q0ZHH6|ATLA3_RAT Atlastin-3 OS=Rattus norvegicus GN=Atl3 PE=2 SV=2
Length = 541
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 29 DSFGSRMSPITGGEASCHSPD-LDSPHLEARENAMMRYKEKKKARRQDKQIQY 80
D + S M I GGE SPD L+ H E ++ A+ +K+ KK +D +Y
Sbjct: 361 DIYYSSMEEICGGEKPYLSPDILEEKHQEFKQLALDHFKKTKKMGGKDFSFRY 413
>sp|Q6GN29|ATLA2_XENLA Atlastin-2 OS=Xenopus laevis GN=atl2 PE=2 SV=1
Length = 569
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 19 SRFSAESSGTDSFGSRMSPITGGEASCHSP-DLDSPHLEARENAMMRYKEKKK------A 71
+ +A + D++ M + GG+ +P DL+ HL+ +E + +++ KK
Sbjct: 370 NNMAAVAGAKDTYSRSMEQVCGGDKPYIAPSDLERKHLDLKETCIKQFRSVKKMGGEEFC 429
Query: 72 RRQDKQIQYPSRKARADARKRVQGR 96
RR +Q++ + A+ K G+
Sbjct: 430 RRYQEQLEAEIEETYANFLKHNDGK 454
>sp|Q95LN3|ATLA2_MACFA Atlastin-2 OS=Macaca fascicularis GN=ATL2 PE=2 SV=1
Length = 565
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 19 SRFSAESSGTDSFGSRMSPITGGEASCHSP-DLDSPHLEARENAMMRYKEKKK------A 71
+ +A + D++ M + GG+ +P DL+ HL+ +E A+ +++ KK
Sbjct: 364 NNLAAVAGARDTYCKSMEQVCGGDKPYIAPSDLERKHLDLKEVAIKQFRSVKKMGGDEFC 423
Query: 72 RRQDKQIQYPSRKARADARKRVQGR 96
RR Q++ + A+ K G+
Sbjct: 424 RRYQDQLEAEIEETYANFIKHNDGK 448
>sp|Q6DD88|ATLA3_HUMAN Atlastin-3 OS=Homo sapiens GN=ATL3 PE=1 SV=1
Length = 541
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 29 DSFGSRMSPITGGEASCHSPD-LDSPHLEARENAMMRYKEKKKARRQDKQIQY 80
D + + M + GGE SPD L+ H E ++ A+ +K+ KK +D +Y
Sbjct: 361 DIYYNNMEEVCGGEKPYLSPDILEEKHCEFKQLALDHFKKTKKMGGKDFSFRY 413
>sp|Q8NHH9|ATLA2_HUMAN Atlastin-2 OS=Homo sapiens GN=ATL2 PE=1 SV=2
Length = 583
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 19 SRFSAESSGTDSFGSRMSPITGGEASCHSP-DLDSPHLEARENAMMRYKEKKK------A 71
+ +A + D++ M + GG+ +P DL+ HL+ +E A+ +++ KK
Sbjct: 382 NNLAAVAGARDTYCKSMEQVCGGDKPYIAPSDLERKHLDLKEVAIKQFRSVKKMGGDEFC 441
Query: 72 RRQDKQIQYPSRKARADARKRVQGR 96
RR Q++ + A+ K G+
Sbjct: 442 RRYQDQLEAEIEETYANFIKHNDGK 466
>sp|P53010|PAN2_YEAST PAB-dependent poly(A)-specific ribonuclease subunit PAN2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAN2 PE=1 SV=1
Length = 1115
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 5 WAIQPSYSTLSISTSRFSAESSGTDSFGSRMSPITGGEASCHSPDLDSPHLEA 57
+ + P+YS L +++ RF GTD+F +P E S PD+D+ + A
Sbjct: 473 YEVPPAYSRLPLTSGRF-----GTDNFD--FTPFNNTEYSGLDPDVDNHYTNA 518
>sp|Q6PA06|ATLA2_MOUSE Atlastin-2 OS=Mus musculus GN=Atl2 PE=1 SV=1
Length = 583
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 19 SRFSAESSGTDSFGSRMSPITGGEASCHSP-DLDSPHLEARENAMMRYKEKKK------A 71
+ +A + D + M + GG+ +P DL+ HL+ +E A+ +++ KK
Sbjct: 382 NNLAAVAGARDVYCKSMEQVCGGDKPYIAPSDLERKHLDLKEVALKQFRSVKKMGGDEFC 441
Query: 72 RRQDKQIQYPSRKARADARKRVQGR 96
RR Q++ + A+ K G+
Sbjct: 442 RRYQDQLEAEIEETYANFIKHNDGK 466
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.123 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,844,772
Number of Sequences: 539616
Number of extensions: 1349525
Number of successful extensions: 4207
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 4160
Number of HSP's gapped (non-prelim): 69
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)