Query 033800
Match_columns 111
No_of_seqs 142 out of 357
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 10:31:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogl_Q JAZ1 incomplete degron 95.4 0.0088 3E-07 31.5 2.0 18 55-72 3-20 (21)
2 3ogk_Q JAZ1 incomplete degron 93.4 0.03 1E-06 29.8 1.3 19 58-76 1-19 (22)
3 4g92_A HAPB protein; transcrip 71.6 3.1 0.00011 27.0 2.8 27 75-101 36-63 (64)
4 2v1o_A Cytosolic acyl coenzyme 38.2 48 0.0016 21.7 4.3 31 44-74 119-149 (151)
5 3qc1_A Immunoglobulin-binding 37.0 20 0.00069 27.6 2.6 19 55-73 173-191 (243)
6 1ci6_A Transcription factor AT 31.5 25 0.00086 21.7 1.9 15 59-73 11-25 (63)
7 2v0p_A TAP42, type 2A phosphat 30.6 30 0.001 26.1 2.6 19 55-73 160-178 (234)
8 3s1b_A Mini-Z; VEGF, cystine k 14.0 88 0.003 17.5 1.6 13 59-71 3-15 (34)
9 3v2c_Y Ribosome-associated inh 12.6 66 0.0022 21.8 0.9 20 60-79 83-102 (119)
10 1gu4_A CAAT/enhancer binding p 12.4 1.1E+02 0.0037 19.8 1.9 17 60-76 25-41 (78)
No 1
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=95.38 E-value=0.0088 Score=31.54 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 033800 55 LEARENAMMRYKEKKKAR 72 (111)
Q Consensus 55 ~~~R~~~v~RYreKkk~R 72 (111)
+.+|.+.|+||.||||.|
T Consensus 3 p~aRk~SLqRFleKRk~R 20 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDR 20 (26)
T ss_pred chhHHHHHHHHHHHhhcc
Confidence 468999999999999987
No 2
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=93.43 E-value=0.03 Score=29.75 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhhccCC
Q 033800 58 RENAMMRYKEKKKARRQDK 76 (111)
Q Consensus 58 R~~~v~RYreKkk~R~f~K 76 (111)
|.+.|+||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5678999999999987543
No 3
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=71.57 E-value=3.1 Score=26.98 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=23.4
Q ss_pred CCcccccchhhhhhhccC-CCcceecCC
Q 033800 75 DKQIQYPSRKARADARKR-VQGRFLKTE 101 (111)
Q Consensus 75 ~KkIrY~~RK~~Ad~RpR-vKGRFvk~~ 101 (111)
.|..-+++|-..|-.|+| -.|||.+.+
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCC
Confidence 456679999999999999 789999875
No 4
>2v1o_A Cytosolic acyl coenzyme A thioester hydrolase; acyl-COA thioesterase 7, serine esterase, protein structure, domain duplication, ACOT7, macrophage; HET: COA; 1.78A {Mus musculus}
Probab=38.22 E-value=48 Score=21.71 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhhcc
Q 033800 44 SCHSPDLDSPHLEARENAMMRYKEKKKARRQ 74 (111)
Q Consensus 44 p~~~~~~~~~~~~~R~~~v~RYreKkk~R~f 74 (111)
|...|..-..+.+++++...||...|.+|.-
T Consensus 119 ~~~iP~~~~~t~~e~~~~~~r~~~~~~~~~~ 149 (151)
T 2v1o_A 119 VLEVPPIVYLRQEQEEEGRKRYEAQKLERME 149 (151)
T ss_dssp BCCCCCCCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 4444544445678888888999887777654
No 5
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=37.02 E-value=20 Score=27.56 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 033800 55 LEARENAMMRYKEKKKARR 73 (111)
Q Consensus 55 ~~~R~~~v~RYreKkk~R~ 73 (111)
...|+++|.|||++|.-..
T Consensus 173 a~rR~~KI~rfK~eKeLe~ 191 (243)
T 3qc1_A 173 ASQRQAKIERYKQKKEVEH 191 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4689999999999986554
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.52 E-value=25 Score=21.66 Aligned_cols=15 Identities=40% Similarity=0.736 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhc
Q 033800 59 ENAMMRYKEKKKARR 73 (111)
Q Consensus 59 ~~~v~RYreKkk~R~ 73 (111)
..|..||++||+.+.
T Consensus 11 r~AA~R~R~KKk~~~ 25 (63)
T 1ci6_A 11 KTAATRYRQKKRAEQ 25 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356799999999875
No 7
>2v0p_A TAP42, type 2A phosphatase-associated protein 42; phosphorylation, signal transduction inhibitor, hydrolase in; 1.80A {Saccharomyces cerevisiae}
Probab=30.61 E-value=30 Score=26.09 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 033800 55 LEARENAMMRYKEKKKARR 73 (111)
Q Consensus 55 ~~~R~~~v~RYreKkk~R~ 73 (111)
...|+++|.|||++|.-..
T Consensus 160 a~~R~~KI~rfK~eKel~~ 178 (234)
T 2v0p_A 160 QLKRKEKIELFQRNKEIST 178 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4679999999999986544
No 8
>3s1b_A Mini-Z; VEGF, cystine knot, signaling protein; 2.90A {Homo sapiens}
Probab=14.01 E-value=88 Score=17.53 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhh
Q 033800 59 ENAMMRYKEKKKA 71 (111)
Q Consensus 59 ~~~v~RYreKkk~ 71 (111)
.+.++||+|----
T Consensus 3 kecllrykeaald 15 (34)
T 3s1b_A 3 KECLLRYKEAALD 15 (34)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcC
Confidence 4688999986543
No 9
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB: 3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Probab=12.58 E-value=66 Score=21.82 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhhccCCccc
Q 033800 60 NAMMRYKEKKKARRQDKQIQ 79 (111)
Q Consensus 60 ~~v~RYreKkk~R~f~KkIr 79 (111)
..|.||++|.+.+.-...++
T Consensus 83 rQLrK~K~K~~~~~~~~~~~ 102 (119)
T 3v2c_Y 83 RQLNKLQHKGEARRAATSVK 102 (119)
T ss_dssp HHHHHHHHSTTCCC------
T ss_pred HHHHHHHHHHHhhcCCcccc
Confidence 35788999887766444443
No 10
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=12.42 E-value=1.1e+02 Score=19.79 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhccCC
Q 033800 60 NAMMRYKEKKKARRQDK 76 (111)
Q Consensus 60 ~~v~RYreKkk~R~f~K 76 (111)
+|+.|.|+|++.+--+-
T Consensus 25 ~AakrSR~krk~r~~e~ 41 (78)
T 1gu4_A 25 IAVRKSRDKAKMRNLET 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67899999999886543
Done!