Query 033800
Match_columns 111
No_of_seqs 142 out of 357
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 10:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033800.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033800hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gy9p1 d.27.1.1 (P:1-78) Ribo 14.7 16 0.0012 22.3 -0.0 26 83-109 18-43 (78)
2 d1imua_ d.204.1.1 (A:) Ribosom 14.5 28 0.002 21.0 1.1 20 61-80 84-103 (107)
3 d1oiga_ g.3.18.1 (A:) Dumpy {F 11.2 41 0.003 16.7 0.9 9 1-9 6-14 (26)
4 d2uubp1 d.27.1.1 (P:1-83) Ribo 7.9 24 0.0017 21.7 -1.1 25 83-108 18-42 (83)
5 d1t5la2 c.37.1.19 (A:415-595) 6.8 1.1E+02 0.0083 19.9 2.1 22 50-71 62-83 (181)
6 d2fyga1 g.86.1.1 (A:6-128) Non 6.2 46 0.0034 22.1 -0.4 21 88-108 82-103 (123)
7 d1pdkb_ b.2.3.2 (B:) PapK pilu 6.1 1E+02 0.0075 18.4 1.4 20 1-20 2-21 (149)
8 d2j01q1 d.41.4.2 (Q:6-141) Rib 5.6 1.3E+02 0.0093 19.6 1.7 19 86-104 115-133 (136)
9 d1qr0a1 d.150.1.1 (A:1-101) 4' 5.2 59 0.0043 19.4 -0.2 21 54-74 24-44 (101)
10 d1l4sa_ d.204.1.1 (A:) Ribosom 5.0 77 0.0056 19.0 0.2 13 61-73 83-95 (112)
No 1
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}
Probab=14.69 E-value=16 Score=22.27 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=19.8
Q ss_pred hhhhhhhccCCCcceecCCCCCCCCCC
Q 033800 83 RKARADARKRVQGRFLKTEGYDSDATD 109 (111)
Q Consensus 83 RK~~Ad~RpRvKGRFvk~~~~d~d~~~ 109 (111)
|=..||.|.+..|+|.-.-++ |||+.
T Consensus 18 rIVv~d~r~~rdgk~iE~lG~-YnP~~ 43 (78)
T d2gy9p1 18 QVVVADSRNARNGRFIERVGF-FNPIA 43 (78)
T ss_dssp EEEEEETTSCTTSCCSEECCE-ECSSC
T ss_pred EEEEeecCCCCCCcceeeeee-ECCcC
Confidence 446789999999999877444 77753
No 2
>d1imua_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=14.50 E-value=28 Score=21.04 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhccCCcccc
Q 033800 61 AMMRYKEKKKARRQDKQIQY 80 (111)
Q Consensus 61 ~v~RYreKkk~R~f~KkIrY 80 (111)
.|.||++|.+.+.-...+++
T Consensus 84 qLrk~k~K~~~~~~~~~~k~ 103 (107)
T d1imua_ 84 QLNKLQHKSESRRADERLKD 103 (107)
T ss_dssp HHHHHHHCCSCCSSCCCSCC
T ss_pred HHHHHHHHHHHhcccchhhh
Confidence 47889988777665555543
No 3
>d1oiga_ g.3.18.1 (A:) Dumpy {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=11.16 E-value=41 Score=16.67 Aligned_cols=9 Identities=11% Similarity=0.169 Sum_probs=5.7
Q ss_pred CCCCCCCCc
Q 033800 1 MDSPWAIQP 9 (111)
Q Consensus 1 ~~s~~~~~~ 9 (111)
|||.||-.+
T Consensus 6 l~sdcpsn~ 14 (26)
T d1oiga_ 6 LNSDCPSNQ 14 (26)
T ss_dssp SSTTSSTTC
T ss_pred EcCCCCccH
Confidence 567777544
No 4
>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}
Probab=7.94 E-value=24 Score=21.67 Aligned_cols=25 Identities=32% Similarity=0.674 Sum_probs=19.0
Q ss_pred hhhhhhhccCCCcceecCCCCCCCCC
Q 033800 83 RKARADARKRVQGRFLKTEGYDSDAT 108 (111)
Q Consensus 83 RK~~Ad~RpRvKGRFvk~~~~d~d~~ 108 (111)
|=.+||.|.+-.|+|.-.-++ |||+
T Consensus 18 rIVv~d~r~~rdGk~IE~lG~-YnP~ 42 (83)
T d2uubp1 18 RIVVTDARRKRDGKYIEKIGY-YDPR 42 (83)
T ss_dssp EEEEEETTSCTTSCCSEEEEE-ECTT
T ss_pred EEEEEecCCCCCCcceeeeeE-ECCC
Confidence 446899999999999876333 6775
No 5
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=6.85 E-value=1.1e+02 Score=19.93 Aligned_cols=22 Identities=9% Similarity=-0.074 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhh
Q 033800 50 LDSPHLEARENAMMRYKEKKKA 71 (111)
Q Consensus 50 ~~~~~~~~R~~~v~RYreKkk~ 71 (111)
.+..+..+|++.+..|++.+-.
T Consensus 62 hg~~~~~eR~~~l~~Fr~g~~~ 83 (181)
T d1t5la2 62 HSEIKTLERIEIIRDLRLGKYD 83 (181)
T ss_dssp CSSCCHHHHHHHHHHHHHTSCS
T ss_pred cCCccHHHHHHHHHHHHCCCCC
Confidence 3567889999999999997753
No 6
>d2fyga1 g.86.1.1 (A:6-128) Nonstructural protein 10, NSP10 {SARS coronavirus [TaxId: 227859]}
Probab=6.17 E-value=46 Score=22.08 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=14.6
Q ss_pred hhccCCCcceecCC-CCCCCCC
Q 033800 88 DARKRVQGRFLKTE-GYDSDAT 108 (111)
Q Consensus 88 d~RpRvKGRFvk~~-~~d~d~~ 108 (111)
|-+=+.|||||-.. +..-||+
T Consensus 82 dG~C~~KGkfVQip~~~~~DPv 103 (123)
T d2fyga1 82 KGFCDLKGKYVQIPTTCANDPV 103 (123)
T ss_dssp TCCCSSTTSEEEEEGGGTTCHH
T ss_pred CceeeecceEEEccCCCcCCCc
Confidence 55667899999873 4456664
No 7
>d1pdkb_ b.2.3.2 (B:) PapK pilus subunit {Escherichia coli [TaxId: 562]}
Probab=6.11 E-value=1e+02 Score=18.36 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=13.1
Q ss_pred CCCCCCCCccCcccceeecc
Q 033800 1 MDSPWAIQPSYSTLSISTSR 20 (111)
Q Consensus 1 ~~s~~~~~~~~S~~s~S~s~ 20 (111)
+|++|.|.+.-..+.+.|..
T Consensus 2 i~~~C~I~~~s~~~~V~lg~ 21 (149)
T d1pdkb_ 2 LDRPCHVSGDSLNKHVVFKT 21 (149)
T ss_dssp CCSTTEECSSTTSCEEECCC
T ss_pred CCCCceecCCCcceEEECCc
Confidence 47888887665555566654
No 8
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]}
Probab=5.55 E-value=1.3e+02 Score=19.58 Aligned_cols=19 Identities=16% Similarity=0.461 Sum_probs=15.7
Q ss_pred hhhhccCCCcceecCCCCC
Q 033800 86 RADARKRVQGRFLKTEGYD 104 (111)
Q Consensus 86 ~Ad~RpRvKGRFvk~~~~d 104 (111)
+|-.+.-++-+||+.+.+|
T Consensus 115 ~a~~KLP~k~k~V~r~~~~ 133 (136)
T d2j01q1 115 IAGHKLPIKTKIVRRDAYD 133 (136)
T ss_dssp HHHHHSSSCEEEECCSCCC
T ss_pred HHHhhCCCcEEEEEeCccc
Confidence 4667788999999998887
No 9
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]}
Probab=5.25 E-value=59 Score=19.36 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHHHhhhcc
Q 033800 54 HLEARENAMMRYKEKKKARRQ 74 (111)
Q Consensus 54 ~~~~R~~~v~RYreKkk~R~f 74 (111)
-++++.+++.||+-++.++.|
T Consensus 24 Ls~~e~~r~~r~~~~~dr~~~ 44 (101)
T d1qr0a1 24 ISPEKREKCRRFYHKEDAHRT 44 (101)
T ss_dssp SCHHHHHHHHHCSSHHHHHHH
T ss_pred CCHHHHHHHHhhCCHHHHHHH
Confidence 345666788888766655544
No 10
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Escherichia coli [TaxId: 562]}
Probab=5.04 E-value=77 Score=19.05 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhhc
Q 033800 61 AMMRYKEKKKARR 73 (111)
Q Consensus 61 ~v~RYreKkk~R~ 73 (111)
.|.||++|.+.+.
T Consensus 83 QLrk~K~K~~~~~ 95 (112)
T d1l4sa_ 83 QLNKLQHKGEARR 95 (112)
T ss_dssp HHHHHHCCCCCCC
T ss_pred HHHHHHHHHHhhc
Confidence 4677777665544
Done!