Query 033801
Match_columns 111
No_of_seqs 110 out of 1083
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 10:32:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjr_K 50S ribosomal protein L 100.0 7.3E-59 2.5E-63 329.3 11.6 110 2-111 5-114 (116)
2 3r8s_N 50S ribosomal protein L 100.0 1.6E-58 5.3E-63 329.2 11.3 110 2-111 5-114 (120)
3 1gd8_A 50S ribosomal protein L 100.0 1.7E-58 5.7E-63 328.3 10.0 110 2-111 5-115 (118)
4 3bbo_P Ribosomal protein L17; 100.0 2.5E-55 8.5E-60 334.3 9.4 110 2-111 94-203 (205)
5 2cqm_A Ribosomal protein L17 i 100.0 1.3E-53 4.5E-58 304.6 6.2 102 10-111 1-104 (122)
6 1t6s_A Conserved hypothetical 57.1 22 0.00076 25.4 5.4 54 37-92 4-60 (162)
7 1sy9_B Cyclic-nucleotide-gated 53.2 0.78 2.7E-05 23.8 -2.1 13 85-97 1-13 (26)
8 2z99_A Putative uncharacterize 36.4 77 0.0026 23.7 5.7 53 39-92 14-66 (219)
9 1otf_A 4-oxalocrotonate tautom 34.8 34 0.0012 19.0 2.8 21 8-28 10-30 (62)
10 2opa_A Probable tautomerase YW 34.2 35 0.0012 18.9 2.8 21 8-28 10-30 (61)
11 3ry0_A Putative tautomerase; o 29.9 45 0.0015 19.1 2.8 21 8-28 10-30 (65)
12 1x4p_A Putative splicing facto 29.2 8.2 0.00028 24.3 -0.7 34 40-73 6-46 (66)
13 1gyx_A YDCE, B1461, hypothetic 27.9 49 0.0017 19.7 2.8 21 8-28 10-31 (76)
14 3m20_A 4-oxalocrotonate tautom 26.0 58 0.002 18.5 2.8 21 8-28 9-29 (62)
15 3h0d_A CTSR; protein DNA compl 25.5 24 0.00082 25.4 1.1 12 88-99 63-74 (155)
16 1xkm_B Distinctin chain B; por 25.0 41 0.0014 17.1 1.6 12 40-51 8-19 (26)
17 1otg_A 5-carboxymethyl-2-hydro 22.4 64 0.0022 21.4 2.8 21 8-28 70-90 (125)
18 3t8r_A Staphylococcus aureus C 22.0 1.5E+02 0.0051 19.8 4.7 45 48-92 17-69 (143)
19 1kdx_A CBP; complex (transcrip 21.3 1.2E+02 0.004 19.4 3.7 40 9-48 10-50 (81)
20 1xd7_A YWNA; structural genomi 21.1 1.8E+02 0.006 19.3 4.9 44 48-92 15-63 (145)
21 3m21_A Probable tautomerase HP 21.0 71 0.0024 18.4 2.5 21 8-28 13-33 (67)
22 2x4k_A 4-oxalocrotonate tautom 20.8 87 0.003 17.0 2.8 21 8-28 13-33 (63)
23 3ej9_A Alpha-subunit of trans- 20.8 80 0.0027 18.9 2.8 21 8-28 11-31 (76)
24 2hv8_D RAB11 family-interactin 20.4 53 0.0018 20.3 1.9 28 21-54 28-55 (64)
25 2d3o_1 Trigger factor, TF; rib 20.1 25 0.00085 23.1 0.3 29 71-111 25-54 (112)
No 1
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=100.00 E-value=7.3e-59 Score=329.29 Aligned_cols=110 Identities=39% Similarity=0.633 Sum_probs=108.3
Q ss_pred CcCCCCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHH
Q 033801 2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA 81 (111)
Q Consensus 2 ~~~~klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~ 81 (111)
.+++||||+++||++|||||+||||+||+|+||++||||+|+|||+|||+||+||+|++|+|.+||.|+++|+|||++|+
T Consensus 5 ~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~~ia 84 (116)
T 2zjr_K 5 KAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVA 84 (116)
T ss_dssp CCCCCCSSCTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHH
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCeeEEEcccCCCCCCCcccccC
Q 033801 82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111 (111)
Q Consensus 82 pRy~~r~GGYTRi~kl~~R~GD~A~maiiE 111 (111)
|||+|||||||||+|+++|.||+|||||||
T Consensus 85 pry~~R~GGYTRI~K~~~R~GD~A~maiiE 114 (116)
T 2zjr_K 85 PKYAERPGGYTRILRVGTRRGDGVTMALIE 114 (116)
T ss_dssp HHTTTSCSCCCEEEECCCCTTTCCCEEEEE
T ss_pred HHhCCCCCCeeEEEECCCCCCCCCceEEEE
Confidence 999999999999999999999999999998
No 2
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...
Probab=100.00 E-value=1.6e-58 Score=329.20 Aligned_cols=110 Identities=48% Similarity=0.774 Sum_probs=108.4
Q ss_pred CcCCCCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHH
Q 033801 2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA 81 (111)
Q Consensus 2 ~~~~klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~ 81 (111)
.+++||||+++||++|||||+||||+||+|+||++||||+|+|||+|||+||+||+|++|+|.+||.|+++|+|||++|+
T Consensus 5 ~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~ela 84 (120)
T 3r8s_N 5 KSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELG 84 (120)
T ss_dssp CCCCCTTSCHHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHSSCCHHHHHHHHHTHH
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHcCeEEEcHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCeeEEEcccCCCCCCCcccccC
Q 033801 82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111 (111)
Q Consensus 82 pRy~~r~GGYTRi~kl~~R~GD~A~maiiE 111 (111)
|||+|||||||||+|+++|.||+|||||||
T Consensus 85 pry~~R~GGYTRI~K~~~R~GD~A~maiiE 114 (120)
T 3r8s_N 85 PRFASRAGGYTRILKCGFRAGDNAPMAYIE 114 (120)
T ss_dssp HHTTTCCSCCEEEEEEEECTTTCCEEEEEE
T ss_pred HHhcCCCCCeEEEEECCCCCCCCcCeEEEE
Confidence 999999999999999999999999999998
No 3
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=100.00 E-value=1.7e-58 Score=328.28 Aligned_cols=110 Identities=45% Similarity=0.710 Sum_probs=100.6
Q ss_pred CcCCCCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHH
Q 033801 2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA 81 (111)
Q Consensus 2 ~~~~klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~ 81 (111)
.+++||||+++||++|||||+||||+||+|+||++||||+|+|||+|||+||+||+|++|+|.+||.|+++|+|||++|+
T Consensus 5 ~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~g~l~~rR~a~~~l~~~~~v~KLF~~ia 84 (118)
T 1gd8_A 5 KSGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIA 84 (118)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHH
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCeeEEEccc-CCCCCCCcccccC
Q 033801 82 YRYKDRAGGYTRLLRSR-IRVGDAAPMAYIE 111 (111)
Q Consensus 82 pRy~~r~GGYTRi~kl~-~R~GD~A~maiiE 111 (111)
|||+|||||||||+|++ +|.||+|||||||
T Consensus 85 pry~~R~GGYTRI~K~~~~R~GD~A~maiiE 115 (118)
T 1gd8_A 85 PRYRDRQGGYTRVLKLAERRRGDGAPLALVE 115 (118)
T ss_dssp HHTSSCCSCCEEEEEEEEECTTTCCEEEEEE
T ss_pred HHhCCCCCCeEEEEECCCCCCCCCCCeEEEE
Confidence 99999999999999999 9999999999998
No 4
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=2.5e-55 Score=334.31 Aligned_cols=110 Identities=48% Similarity=0.824 Sum_probs=108.2
Q ss_pred CcCCCCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHH
Q 033801 2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA 81 (111)
Q Consensus 2 ~~~~klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~ 81 (111)
.+++||||+++||++|||||+++||+||+|+||++||||+|+|||+|||+||+||+|++|+|.+||+|+++|+|||++|+
T Consensus 94 ~~~rKLgRtssHRkAmLRNLvtsLI~HeRI~TT~aKAKElR~~aEkLITlAK~gdlhaRR~a~~~L~dk~~V~KLF~eia 173 (205)
T 3bbo_P 94 RKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVP 173 (205)
T ss_dssp CCSCCTTSCGGGHHHHHHHHHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTTCCCTTHHHHHTTSSG
T ss_pred cCCCCCCCChHHHHHHHHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCeeEEEcccCCCCCCCcccccC
Q 033801 82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111 (111)
Q Consensus 82 pRy~~r~GGYTRi~kl~~R~GD~A~maiiE 111 (111)
|||+||+||||||+|+++|.||+|||||||
T Consensus 174 PRY~dR~GGYTRIlKlg~R~GD~ApMAiIE 203 (205)
T 3bbo_P 174 DRYGERNGGYTRIIRTLPRRGDNAPMAYIE 203 (205)
T ss_dssp GGGSSCCSCCEECCBCSCCSSSCCCCEEEE
T ss_pred HHhCCCCCCeeEEEECCCCCCCCcceEEEE
Confidence 999999999999999999999999999998
No 5
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S
Probab=100.00 E-value=1.3e-53 Score=304.57 Aligned_cols=102 Identities=42% Similarity=0.620 Sum_probs=99.5
Q ss_pred CchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChh--HHHHHHhhcCChhHHHHHHHHHHHhhccC
Q 033801 10 PTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLC--AARRAAAFVRGDDVIHKLFTELAYRYKDR 87 (111)
Q Consensus 10 ~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~--~~r~a~~~L~~~~~v~KLf~~l~pRy~~r 87 (111)
.|+||++|||||+||||+||+|+||++||||+|+|||+|||+||+||+| ++|+|.+||.|+++|+|||++|+|||++|
T Consensus 1 g~~~R~amlrnl~tsLi~herI~TT~~KAKelR~~aEklITlaK~g~~~~r~rR~a~~~l~d~~~v~KLF~elapry~~R 80 (122)
T 2cqm_A 1 GSSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQ 80 (122)
T ss_dssp CCCCCSSHHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999999999999999999999999999999998 56999999999999999999999999999
Q ss_pred CCCeeEEEcccCCCCCCCcccccC
Q 033801 88 AGGYTRLLRSRIRVGDAAPMAYIE 111 (111)
Q Consensus 88 ~GGYTRi~kl~~R~GD~A~maiiE 111 (111)
+||||||+|+++|.||+|||||||
T Consensus 81 ~GGYTRI~K~~~R~GD~A~maiIE 104 (122)
T 2cqm_A 81 TGGYTRMLQIPNRSLDRAKMAVIE 104 (122)
T ss_dssp CSCCEEEEEECCCSSSCCCEEEEE
T ss_pred CCCeeEEEECCCCCCCCCCeEEEE
Confidence 999999999999999999999998
No 6
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=57.10 E-value=22 Score=25.38 Aligned_cols=54 Identities=7% Similarity=0.150 Sum_probs=38.2
Q ss_pred hHHHHhhhHHHHHHhhccCChhHHHHHHhhcC---ChhHHHHHHHHHHHhhccCCCCee
Q 033801 37 KAKEVRRLADNMVQLGKEGSLCAARRAAAFVR---GDDVIHKLFTELAYRYKDRAGGYT 92 (111)
Q Consensus 37 KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~---~~~~v~KLf~~l~pRy~~r~GGYT 92 (111)
...++...+|-++-.+ +..-+.......+. +.+.+..+.++|...|.+++.|+.
T Consensus 4 ~~~~~~~~iEAlLf~~--~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~ 60 (162)
T 1t6s_A 4 QRQQLLRSLEALIFSS--EEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFR 60 (162)
T ss_dssp HHHHHHHHHHHHHHHC--SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred cHHHHHHHHHHHHHHc--CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEE
Confidence 3566778899998887 33333333444444 578899999999999997666664
No 7
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=53.19 E-value=0.78 Score=23.75 Aligned_cols=13 Identities=38% Similarity=0.859 Sum_probs=10.8
Q ss_pred ccCCCCeeEEEcc
Q 033801 85 KDRAGGYTRLLRS 97 (111)
Q Consensus 85 ~~r~GGYTRi~kl 97 (111)
+.|.|||-||.+|
T Consensus 1 qqrrggfrri~rl 13 (26)
T 1sy9_B 1 QQRRGGFRRIARL 13 (26)
T ss_pred CccchhHHHHHHH
Confidence 3578999999886
No 8
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=36.40 E-value=77 Score=23.71 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=36.8
Q ss_pred HHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHHHhhccCCCCee
Q 033801 39 KEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYT 92 (111)
Q Consensus 39 Kelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~pRy~~r~GGYT 92 (111)
.++...+|-++-.+-.. +....++.-+=.+.+.+..+.++|...|.+++.|+.
T Consensus 14 ~~l~~~iEAlLf~a~ep-vs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGie 66 (219)
T 2z99_A 14 DELKRVLEALLLVIDTP-VTADALAAATEQPVYRVAAKLQLMADELTGRDSGID 66 (219)
T ss_dssp HHHHHHHHHHHHHCSSC-BCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEE
Confidence 44667889888876433 444444433324677899999999999987777764
No 9
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=34.76 E-value=34 Score=18.98 Aligned_cols=21 Identities=10% Similarity=0.354 Sum_probs=18.4
Q ss_pred CCCchHHHHHHHHHHHHHHhc
Q 033801 8 NRPTGHRMSMLRTMVSQLVKH 28 (111)
Q Consensus 8 gr~~~hR~~llrnl~t~Li~h 28 (111)
||+.+++.+|.+.++..|.++
T Consensus 10 grs~e~k~~l~~~i~~~l~~~ 30 (62)
T 1otf_A 10 GRTDEQKETLIRQVSEAMANS 30 (62)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 788999999999999888876
No 10
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=34.22 E-value=35 Score=18.91 Aligned_cols=21 Identities=5% Similarity=0.243 Sum_probs=18.1
Q ss_pred CCCchHHHHHHHHHHHHHHhc
Q 033801 8 NRPTGHRMSMLRTMVSQLVKH 28 (111)
Q Consensus 8 gr~~~hR~~llrnl~t~Li~h 28 (111)
||+.++..+|.+.++..|.++
T Consensus 10 grs~eqk~~l~~~i~~~l~~~ 30 (61)
T 2opa_A 10 GRTDEQKRNLVEKVTEAVKET 30 (61)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 788999999999988888776
No 11
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=29.92 E-value=45 Score=19.10 Aligned_cols=21 Identities=5% Similarity=0.069 Sum_probs=18.3
Q ss_pred CCCchHHHHHHHHHHHHHHhc
Q 033801 8 NRPTGHRMSMLRTMVSQLVKH 28 (111)
Q Consensus 8 gr~~~hR~~llrnl~t~Li~h 28 (111)
||+.++..+|.+.+...|.++
T Consensus 10 Grs~eqk~~L~~~it~~~~~~ 30 (65)
T 3ry0_A 10 GRSPQEVAALGEALTAAAHET 30 (65)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999998888775
No 12
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=29.25 E-value=8.2 Score=24.28 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=25.0
Q ss_pred HHhhhHHHHHHhhccCChhH-------HHHHHhhcCChhHH
Q 033801 40 EVRRLADNMVQLGKEGSLCA-------ARRAAAFVRGDDVI 73 (111)
Q Consensus 40 elr~~aEklIt~AK~~~~~~-------~r~a~~~L~~~~~v 73 (111)
+++..+|+|......|.+.- ..-|.+||.|++..
T Consensus 6 ~~~~~ieKLa~fVaeGgpe~~~~a~~k~nPaf~FL~D~~S~ 46 (66)
T 1x4p_A 6 SGVGTIDQLVKRVIEGSLSPKERTLLKEDPAYWFLSDENSL 46 (66)
T ss_dssp CSSHHHHHHHHHHHHTCSCHHHHHHHHHSGGGCTTTCCSSS
T ss_pred hHHHHHHHHHHHHHccCCcHHHHHHcccCCceeeeeCCCcH
Confidence 45778999999888887642 23567899998753
No 13
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=27.94 E-value=49 Score=19.71 Aligned_cols=21 Identities=5% Similarity=0.324 Sum_probs=18.0
Q ss_pred CC-CchHHHHHHHHHHHHHHhc
Q 033801 8 NR-PTGHRMSMLRTMVSQLVKH 28 (111)
Q Consensus 8 gr-~~~hR~~llrnl~t~Li~h 28 (111)
|| +.++..+|.+.++..|.++
T Consensus 10 Grls~eqk~~L~~~l~~~l~~~ 31 (76)
T 1gyx_A 10 RELDEQQKAALAADITDVIIRH 31 (76)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 78 8889999999888888876
No 14
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=25.97 E-value=58 Score=18.55 Aligned_cols=21 Identities=10% Similarity=0.181 Sum_probs=17.8
Q ss_pred CCCchHHHHHHHHHHHHHHhc
Q 033801 8 NRPTGHRMSMLRTMVSQLVKH 28 (111)
Q Consensus 8 gr~~~hR~~llrnl~t~Li~h 28 (111)
||+.++..+|.+.+...+.+.
T Consensus 9 grt~eqK~~L~~~it~~~~~~ 29 (62)
T 3m20_A 9 KLDVGKKREFVERLTSVAAEI 29 (62)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999988887764
No 15
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=25.46 E-value=24 Score=25.41 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=10.0
Q ss_pred CCCeeEEEcccC
Q 033801 88 AGGYTRLLRSRI 99 (111)
Q Consensus 88 ~GGYTRi~kl~~ 99 (111)
-|||-||.|+..
T Consensus 63 GGGyIRI~kv~~ 74 (155)
T 3h0d_A 63 GGGYIRIMKVKT 74 (155)
T ss_dssp TTCEEEEEEEEE
T ss_pred CCceEEEEEecc
Confidence 569999999864
No 16
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=24.97 E-value=41 Score=17.11 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=7.5
Q ss_pred HHhhhHHHHHHh
Q 033801 40 EVRRLADNMVQL 51 (111)
Q Consensus 40 elr~~aEklIt~ 51 (111)
|.|+|.|.|-..
T Consensus 8 earkyleqlhrk 19 (26)
T 1xkm_B 8 EARKYLEQLHRK 19 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467777776543
No 17
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=22.41 E-value=64 Score=21.38 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=19.3
Q ss_pred CCCchHHHHHHHHHHHHHHhc
Q 033801 8 NRPTGHRMSMLRTMVSQLVKH 28 (111)
Q Consensus 8 gr~~~hR~~llrnl~t~Li~h 28 (111)
||+.+++++|...+...|.+|
T Consensus 70 GRs~eqK~~L~~~v~~~l~~~ 90 (125)
T 1otg_A 70 GRSLESRQQAGEMLFELIKTH 90 (125)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998886
No 18
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=22.02 E-value=1.5e+02 Score=19.76 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=31.8
Q ss_pred HHHhhccC---ChhHHHHHHhhcCChhHHHHHHHHHHHh-----hccCCCCee
Q 033801 48 MVQLGKEG---SLCAARRAAAFVRGDDVIHKLFTELAYR-----YKDRAGGYT 92 (111)
Q Consensus 48 lIt~AK~~---~~~~~r~a~~~L~~~~~v~KLf~~l~pR-----y~~r~GGYT 92 (111)
|+.+|..+ .......|...=-++..+.|++..|..- ...++|||.
T Consensus 17 L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~ 69 (143)
T 3t8r_A 17 MISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQ 69 (143)
T ss_dssp HHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEE
T ss_pred HHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCee
Confidence 45677642 2456677777777888999999998762 456678885
No 19
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=21.30 E-value=1.2e+02 Score=19.41 Aligned_cols=40 Identities=8% Similarity=0.130 Sum_probs=28.8
Q ss_pred CCchHHHHHHHHHHHHHHhccccee-cHHhHHHHhhhHHHH
Q 033801 9 RPTGHRMSMLRTMVSQLVKHERIET-TVAKAKEVRRLADNM 48 (111)
Q Consensus 9 r~~~hR~~llrnl~t~Li~herI~T-T~~KAKelr~~aEkl 48 (111)
=+.+.|.+|+..|+.++|-+-...+ .-++-+.+..||.++
T Consensus 10 vt~~lR~hlv~Klv~aI~P~pdp~a~~d~rm~~l~~yArkv 50 (81)
T 1kdx_A 10 VTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKV 50 (81)
T ss_dssp SCHHHHHHHHHHHHHHHSCCSSGGGGGSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCCCChhhhhhHHHHHHHHHHHHH
Confidence 3578899999999999998865443 445556666666654
No 20
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=21.10 E-value=1.8e+02 Score=19.28 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=28.0
Q ss_pred HHHhhccCChhHHHHHHhhcCChhHHHHHHHHHHH-----hhccCCCCee
Q 033801 48 MVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAY-----RYKDRAGGYT 92 (111)
Q Consensus 48 lIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~p-----Ry~~r~GGYT 92 (111)
|+.+|...+......|...=-++..+.|++..|.. -... +|||.
T Consensus 15 L~~La~~~~~s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~ 63 (145)
T 1xd7_A 15 LSLISMDEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGAS 63 (145)
T ss_dssp HHHHHTCSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCE
T ss_pred HHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCce
Confidence 45566543324445666666677888999988875 2445 78873
No 21
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=20.96 E-value=71 Score=18.37 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=17.8
Q ss_pred CCCchHHHHHHHHHHHHHHhc
Q 033801 8 NRPTGHRMSMLRTMVSQLVKH 28 (111)
Q Consensus 8 gr~~~hR~~llrnl~t~Li~h 28 (111)
||+.++..+|.+.+...|.+.
T Consensus 13 grs~eqK~~l~~~lt~~l~~~ 33 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKV 33 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 689999999999998888763
No 22
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=20.80 E-value=87 Score=16.99 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=17.5
Q ss_pred CCCchHHHHHHHHHHHHHHhc
Q 033801 8 NRPTGHRMSMLRTMVSQLVKH 28 (111)
Q Consensus 8 gr~~~hR~~llrnl~t~Li~h 28 (111)
|++.+++.++...+...|.++
T Consensus 13 g~s~e~k~~l~~~l~~~l~~~ 33 (63)
T 2x4k_A 13 GRSDEQLKNLVSEVTDAVEKT 33 (63)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 788888999988888888765
No 23
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=20.79 E-value=80 Score=18.91 Aligned_cols=21 Identities=5% Similarity=0.189 Sum_probs=18.1
Q ss_pred CCCchHHHHHHHHHHHHHHhc
Q 033801 8 NRPTGHRMSMLRTMVSQLVKH 28 (111)
Q Consensus 8 gr~~~hR~~llrnl~t~Li~h 28 (111)
||+.+++.+|.+.+...|.+.
T Consensus 11 Grs~eqK~~L~~~it~~l~~~ 31 (76)
T 3ej9_A 11 GRTDEQKRALSAGLLRVISEA 31 (76)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999988888764
No 24
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=20.45 E-value=53 Score=20.26 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=18.7
Q ss_pred HHHHHHhcccceecHHhHHHHhhhHHHHHHhhcc
Q 033801 21 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKE 54 (111)
Q Consensus 21 l~t~Li~herI~TT~~KAKelr~~aEklIt~AK~ 54 (111)
|+..|.+.+.|- ++|+.|+|+|+..-..
T Consensus 28 L~~~l~eqee~n------~~Le~YID~LL~~ImE 55 (64)
T 2hv8_D 28 LMEAIQKQEEIN------FRLQDYIDRIIVAIME 55 (64)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 344455555543 7999999999875443
No 25
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=20.05 E-value=25 Score=23.07 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHhhccCCCCeeEEEcc-cCCCCCCCcccccC
Q 033801 71 DVIHKLFTELAYRYKDRAGGYTRLLRS-RIRVGDAAPMAYIE 111 (111)
Q Consensus 71 ~~v~KLf~~l~pRy~~r~GGYTRi~kl-~~R~GD~A~maiiE 111 (111)
..+.+.+++++.++ ++ |+|+| .+|+++||
T Consensus 25 ~~~~~~~~~~~k~~-----------~ipGFRkG-KvP~~vi~ 54 (112)
T 2d3o_1 25 RAYDQVWAGLARDV-----------RVPGFRPG-KAPRKVIE 54 (112)
T ss_dssp HHHHHHHHHHHTTS-----------CBTTBCTT-CCCSTTHH
T ss_pred HHHHHHHHHHHhhC-----------CCCCcCCC-CCCHHHHH
Confidence 45666666666554 43 57888 47888774
Done!