RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 033801
(111 letters)
>gnl|CDD|235522 PRK05591, rplQ, 50S ribosomal protein L17; Validated.
Length = 113
Score = 157 bits (401), Expect = 1e-51
Identities = 58/111 (52%), Positives = 78/111 (70%)
Query: 1 MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
K RKL R + HR +MLR + + L++HERIETT+ KAKE+RR+ + ++ L K+G L A
Sbjct: 1 RKKGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLHAR 60
Query: 61 RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
R+A A +R + +HKLF E+A RY DR GGYTR+L+ R GD APMA IE
Sbjct: 61 RQAFARLRDKEAVHKLFDEIAPRYADRNGGYTRILKLGFRRGDNAPMAIIE 111
>gnl|CDD|223281 COG0203, RplQ, Ribosomal protein L17 [Translation, ribosomal
structure and biogenesis].
Length = 116
Score = 140 bits (355), Expect = 1e-44
Identities = 56/110 (50%), Positives = 75/110 (68%)
Query: 2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAAR 61
K RKL R + HR +MLR + + L++HERIETT+ KAKE+RR+ + ++ L K+G L R
Sbjct: 5 KKGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLANRR 64
Query: 62 RAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
A A +R D + KLF E+A RY +R GGYTR+L+ R GD APMA IE
Sbjct: 65 LAFARLRDKDAVKKLFDEIAPRYAERNGGYTRILKLGFRRGDNAPMAIIE 114
>gnl|CDD|216356 pfam01196, Ribosomal_L17, Ribosomal protein L17.
Length = 97
Score = 137 bits (347), Expect = 9e-44
Identities = 50/95 (52%), Positives = 70/95 (73%)
Query: 17 MLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKL 76
+LR + + L++HERIETT+AKAKE+R A+ ++ L K+G L A R+A +F+R +++ KL
Sbjct: 1 LLRNLATSLIRHERIETTLAKAKELRPYAEKLITLAKKGDLHARRQALSFLRDKELVKKL 60
Query: 77 FTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
F ELA RY DR GGYTR+++ R GD APMA IE
Sbjct: 61 FDELAPRYADRNGGYTRIIKLGPRRGDNAPMAIIE 95
>gnl|CDD|129169 TIGR00059, L17, ribosomal protein L17. Eubacterial and
mitochondrial. The mitochondrial form, from yeast,
contains an additional 110 amino acids C-terminal to the
region found by this model [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 112
Score = 119 bits (301), Expect = 1e-36
Identities = 52/108 (48%), Positives = 77/108 (71%)
Query: 4 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
+RKL R + HR ++LR + S L++HE+I+TT+AKAKE+RR+ + ++ L K + R A
Sbjct: 2 YRKLGRTSAHRKALLRNLASALIRHEKIKTTLAKAKELRRVVEKLITLAKVDNFNNRREA 61
Query: 64 AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
A++R +++HKLF+E+A RY R GGYTR+L+ R GDAA MA IE
Sbjct: 62 KAYIRNKEIVHKLFSEIAPRYAQRPGGYTRILKLGPRRGDAAEMAIIE 109
>gnl|CDD|173371 PTZ00076, PTZ00076, 60S ribosomal protein L17; Provisional.
Length = 253
Score = 69.4 bits (170), Expect = 1e-15
Identities = 33/109 (30%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 4 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
FR+ + HR ++ + +L+++ R+E T+ +AKE+++ A+ ++ L K+ + + +
Sbjct: 19 FRRAHGQPHHRWDSIKNQLDELLRYGRLELTLPRAKELQQYAEELIYLAKKDTPESNLKV 78
Query: 64 AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRS-RIRVGDAAPMAYIE 111
+ +R KL+ + Y+DR +TR++ R+R+ DAAPMAYIE
Sbjct: 79 ESMLRTPQGRRKLYEKYVPLYRDRPFFFTRVVNQWRLRLRDAAPMAYIE 127
>gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed.
Length = 913
Score = 29.5 bits (66), Expect = 0.28
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 22 VSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVI 73
+S L+K E IE V AK + A+ + Q G+ G+L A A RG D++
Sbjct: 465 MSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRPGALTIATNMAG--RGTDIL 514
>gnl|CDD|233212 TIGR00963, secA, preprotein translocase, SecA subunit. The
proteins SecA-F and SecY, not all of which are
necessary, comprise the standard prokaryotic protein
translocation apparatus. Other, specialized
translocation systems also exist but are not as broadly
distributed. This model describes SecA, an essential
member of the apparatus. This model excludes SecA2 of
the accessory secretory system [Protein fate, Protein
and peptide secretion and trafficking].
Length = 745
Score = 28.4 bits (64), Expect = 0.69
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 21 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVI 73
++S L+K I V AK R A+ + Q G++G++ A A RG D+
Sbjct: 420 LLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAG--RGTDIK 470
>gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed.
Length = 970
Score = 27.5 bits (61), Expect = 1.8
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 22 VSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDV 72
+S++++ RIE TV AK + A+ + GK G++ A A RG D+
Sbjct: 584 LSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKLGAVTVATNMAG--RGTDI 632
>gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed.
Length = 908
Score = 27.2 bits (60), Expect = 2.0
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 21 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVI 73
++++L+ E+I V AK R A+ + Q G+ G++ A A RG D++
Sbjct: 464 LLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGAVTIATNMAG--RGTDIV 514
>gnl|CDD|100028 cd02192, PurM-like3, AIR synthase (PurM) related protein, subgroup
3 of unknown function. The family of PurM related
proteins includes Hydrogen expression/formation protein
HypE, AIR synthases, FGAM synthase and Selenophosphate
synthetase (SelD). They all contain two conserved
domains and seem to dimerize. The N-terminal domain
forms the dimer interface and is a putative ATP binding
domain.
Length = 283
Score = 26.4 bits (59), Expect = 3.1
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 33 TTVAKAKEVRRLADNMVQLGKEGSLCAAR 61
TT+ +RR + +L + G + AA+
Sbjct: 178 TTMKSPALLRRQIALLPELAERGLVHAAK 206
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated.
Length = 425
Score = 25.5 bits (56), Expect = 6.8
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 10/41 (24%)
Query: 60 ARRAAAFVRGDDVIHKLFTELA----------YRYKDRAGG 90
RR+AA RG IH +F + A Y D AGG
Sbjct: 9 QRRSAAVPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGG 49
>gnl|CDD|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed.
Length = 896
Score = 25.8 bits (56), Expect = 7.0
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 22 VSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVI 73
+SQL+K E I+ V AK + A + + G+ G++ A A RG D++
Sbjct: 460 LSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGAVTIATNMAG--RGTDIV 509
>gnl|CDD|99965 cd03791, GT1_Glycogen_synthase_DULL1_like, This family is most
closely related to the GT1 family of
glycosyltransferases. Glycogen synthase catalyzes the
formation and elongation of the alpha-1,4-glucose
backbone using ADP-glucose, the second and key step of
glycogen biosynthesis. This family includes starch
synthases of plants, such as DULL1 in Zea mays and
glycogen synthases of various organisms.
Length = 476
Score = 25.2 bits (56), Expect = 8.6
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 69 GDDVIHKLFTELAYRYKDRAGGY 91
GD + ELA RY R
Sbjct: 334 GDPEYEEALRELAARYPGRVAVL 356
>gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is
an aminohydrolase responsible for the conversion of
guanine to xanthine and ammonia, the first step to
utilize guanine as a nitrogen source. This reaction also
removes the guanine base from the pool and therefore can
play a role in the regulation of cellular GTP and the
guanylate nucleotide pool.
Length = 429
Score = 25.3 bits (56), Expect = 9.6
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 12 GHRMSMLRTM-----VSQLVKHERIETTVAKAKEVRRLA 45
G SML T+ VS+L+ +E E LA
Sbjct: 322 GTSFSMLDTLRQAYKVSRLLGYELGGHAKLSPAEAFYLA 360
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.135 0.380
Gapped
Lambda K H
0.267 0.0824 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,701,294
Number of extensions: 492546
Number of successful extensions: 643
Number of sequences better than 10.0: 1
Number of HSP's gapped: 640
Number of HSP's successfully gapped: 37
Length of query: 111
Length of database: 10,937,602
Length adjustment: 75
Effective length of query: 36
Effective length of database: 7,611,052
Effective search space: 273997872
Effective search space used: 273997872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.0 bits)