RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 033801
         (111 letters)



>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 113

 Score =  117 bits (294), Expect = 3e-36
 Identities = 43/109 (39%), Positives = 64/109 (58%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             RKLNR +  R+++ R   + L++  RI+TT+ KAKE+R   + ++   K G L + R 
Sbjct: 4   AGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRL 63

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
            A  +   DV+ K+  E+A +Y +R GGYTR+LR   R GD   MA IE
Sbjct: 64  VAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIE 112


>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17
           {Escherichia coli [TaxId: 562]}
          Length = 120

 Score =  117 bits (294), Expect = 4e-36
 Identities = 53/109 (48%), Positives = 72/109 (66%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R 
Sbjct: 6   SGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRL 65

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE
Sbjct: 66  AFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIE 114


>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus
           thermophilus [TaxId: 274]}
          Length = 105

 Score =  101 bits (253), Expect = 4e-30
 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 1/102 (0%)

Query: 11  TGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGD 70
           + HR+++ R     L+ H RI TTV KAKE+R   D+++ L K G L A R     ++  
Sbjct: 1   SSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDV 60

Query: 71  DVIHKLFTELAYRYKDRAGGYTRLLR-SRIRVGDAAPMAYIE 111
            ++ KLF E+A RY+DR GGYTR+L+ +  R GD AP+A +E
Sbjct: 61  KLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVE 102


>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score =  101 bits (252), Expect = 8e-30
 Identities = 42/97 (43%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 17  MLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA--RRAAAFVRGDDVIH 74
           +LR +++ LV+HERIE   A+  E+R  A+ ++  GK G       R A  ++   D+I 
Sbjct: 1   LLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIP 60

Query: 75  KLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           KLF  LA RYKD+ GGYTR+L+   R  D A MA IE
Sbjct: 61  KLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIE 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,286
Number of extensions: 15255
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 7
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)