BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033806
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CR41|HYPK_MOUSE Huntingtin-interacting protein K OS=Mus musculus GN=Hypk PE=2 SV=2
Length = 129
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 55/82 (67%)
Query: 25 LDKLTDRVEDRQLDSTRVQEAMASIAASKAGDLNAMRMREKELAAVKINAADVDIIANEL 84
L+++TD E++++ S+ ++ AM+ I ++ + A + REKELA V I D+++I E+
Sbjct: 43 LERVTDYAEEKEIQSSNLETAMSVIGDRRSREQKAKQEREKELAKVTIKKEDLELIMTEM 102
Query: 85 ELDKKVAERTLREHKGDAVAAI 106
E+ + AER+LREH G+ V A+
Sbjct: 103 EISRAAAERSLREHMGNVVEAL 124
>sp|Q2PFU1|HYPK_MACFA Huntingtin-interacting protein K OS=Macaca fascicularis GN=HYPK
PE=2 SV=1
Length = 129
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 55/82 (67%)
Query: 25 LDKLTDRVEDRQLDSTRVQEAMASIAASKAGDLNAMRMREKELAAVKINAADVDIIANEL 84
L+++TD E++++ S+ ++ AM+ I ++ + A + REKELA V I D+++I E+
Sbjct: 43 LERVTDYAEEKEIQSSNLETAMSVIGDRRSREQKAKQEREKELAKVTIKKEDLELIMTEM 102
Query: 85 ELDKKVAERTLREHKGDAVAAI 106
E+ + AER+LREH G+ V A+
Sbjct: 103 EISRAAAERSLREHMGNVVEAL 124
>sp|Q9NX55|HYPK_HUMAN Huntingtin-interacting protein K OS=Homo sapiens GN=HYPK PE=1 SV=2
Length = 129
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 55/82 (67%)
Query: 25 LDKLTDRVEDRQLDSTRVQEAMASIAASKAGDLNAMRMREKELAAVKINAADVDIIANEL 84
L+++TD E++++ S+ ++ AM+ I ++ + A + REKELA V I D+++I E+
Sbjct: 43 LERVTDYAEEKEIQSSNLETAMSVIGDRRSREQKAKQEREKELAKVTIKKEDLELIMTEM 102
Query: 85 ELDKKVAERTLREHKGDAVAAI 106
E+ + AER+LREH G+ V A+
Sbjct: 103 EISRAAAERSLREHMGNVVEAL 124
>sp|Q82NZ4|CLPP1_STRAW ATP-dependent Clp protease proteolytic subunit 1 OS=Streptomyces
avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /
NCIMB 12804 / NRRL 8165 / MA-4680) GN=clpP1 PE=3 SV=1
Length = 217
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 58 NAMRMREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDA 102
NA M + A + AD++I A LE KK ER EH G +
Sbjct: 127 NARIMMHQPSAGIGGTTADIEIQAENLEFTKKAIERITAEHTGQS 171
>sp|Q9X7R9|CLPP3_STRCO ATP-dependent Clp protease proteolytic subunit 3 OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=clpP3
PE=3 SV=1
Length = 217
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 58 NAMRMREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAI 106
NA M + A + AD++I A+ L+ K+ ER EH G + I
Sbjct: 127 NARIMMHQPSAGIGGTTADIEIQADNLDFTKRTIERITAEHTGQSPETI 175
>sp|B0BT96|GLGB_ACTPJ 1,4-alpha-glucan branching enzyme GlgB OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=glgB PE=3
SV=1
Length = 777
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 36 QLDSTRVQEAMASIAASKAGDLNAMRMREKELAAVKINAADVDIIANELELD 87
QL ++ + + +AGD++ +R+ E VKI +AD I++ L++D
Sbjct: 16 QLSQAYCKDPFSYLGLHQAGDVSVIRVFLPEATTVKILSADGQILSEALKID 67
>sp|B3H0J1|GLGB_ACTP7 1,4-alpha-glucan branching enzyme GlgB OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=glgB PE=3
SV=1
Length = 777
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 36 QLDSTRVQEAMASIAASKAGDLNAMRMREKELAAVKINAADVDIIANELELD 87
QL ++ + + +AGD++ +R+ E VKI +AD I++ L++D
Sbjct: 16 QLSQAYCKDPFSYLGLHQAGDVSVIRVFLPEATTVKILSADGQILSEALKID 67
>sp|A7TG43|NACA_VANPO Nascent polypeptide-associated complex subunit alpha
OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
70294) GN=EGD2 PE=3 SV=1
Length = 169
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 72 INAADVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109
++A D++++A++ + K A + L+EH GD V AI L
Sbjct: 130 LSAEDIELVASQANVSKNKAIKALKEHNGDIVNAIMAL 167
>sp|P0CN08|DNLI4_CRYNJ DNA ligase 4 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=LIG4 PE=3 SV=1
Length = 1065
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MDGADGGEVDRIVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASKAGDLNAM 60
MDG D E+D + +S++ + + A + L ++ +R L+ ++QEA + + GD ++
Sbjct: 823 MDGEDKDEID-VEESRESKNRRMAREDLKEKESNRTLEQKKLQEAWGLRSRASPGDSDSE 881
Query: 61 RMREKEL 67
E L
Sbjct: 882 PEEEMSL 888
>sp|P0CN09|DNLI4_CRYNB DNA ligase 4 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=LIG4 PE=3 SV=1
Length = 1065
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MDGADGGEVDRIVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASKAGDLNAM 60
MDG D E+D + +S++ + + A + L ++ +R L+ ++QEA + + GD ++
Sbjct: 823 MDGEDKDEID-VEESRESKNRRMAREDLKEKESNRTLEQKKLQEAWGLRSRASPGDSDSE 881
Query: 61 RMREKEL 67
E L
Sbjct: 882 PEEEMSL 888
>sp|A3GHD3|NACA_PICST Nascent polypeptide-associated complex subunit alpha
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=EGD2 PE=3 SV=1
Length = 176
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 72 INAADVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109
++A D+DII + ++ + A + LR+H GD V AI L
Sbjct: 138 LDAKDIDIIVEQTQVSRAKAVKALRKHDGDMVNAIMEL 175
>sp|Q97AH7|SYA_THEVO Alanine--tRNA ligase OS=Thermoplasma volcanium (strain ATCC 51530 /
DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=alaS PE=3
SV=2
Length = 876
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 19/82 (23%)
Query: 14 DSKDLQQQ-----SKALDKLTDRVED---------RQLDSTRVQEAMASIAASKAGDLNA 59
DS DL + K +D+ D VE+ R LDS R + I S N+
Sbjct: 737 DSYDLAYRVSNISKKNIDQAGDFVENTVRELSKIKRDLDSARTKLIEEEIRKS-----NS 791
Query: 60 MRMREKELAAVKINAADVDIIA 81
+++ EKE+ A++ +D+DI++
Sbjct: 792 IKLGEKEIPAIEAETSDIDIVS 813
>sp|B2GBQ5|DNAK_LACF3 Chaperone protein DnaK OS=Lactobacillus fermentum (strain NBRC 3956
/ LMG 18251) GN=dnaK PE=3 SV=1
Length = 618
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 17 DLQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASKAGDLNAMRMREKELAAVKINAAD 76
DL Q AL +L D E + D + VQEA S+ +GD + + EK L + N
Sbjct: 224 DLSQDKMALQRLKDAAEKAKKDVSGVQEAQISLPFITSGDNGPLHL-EKTLTRAQFNQLT 282
Query: 77 VDII 80
D++
Sbjct: 283 NDLV 286
>sp|A5DGN9|NACA_PICGU Nascent polypeptide-associated complex subunit alpha OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=EGD2 PE=3 SV=2
Length = 178
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 72 INAADVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109
+++ D++II + ++ + A + LR HKGD V AI L
Sbjct: 140 LDSKDIEIIVEQTQVSRAKAVKALRAHKGDMVNAIMEL 177
>sp|B2G6W3|DNAK_LACRJ Chaperone protein DnaK OS=Lactobacillus reuteri (strain JCM 1112)
GN=dnaK PE=3 SV=1
Length = 621
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 17 DLQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASKAGDLNAMRMREKELAAVKINAAD 76
DL Q AL +L D E + D + VQEA S+ AG+ + + EK L+ + N
Sbjct: 224 DLSQDKMALQRLKDAAEKAKKDLSGVQEAQISLPFISAGENGPLHL-EKTLSRAQFNQLT 282
Query: 77 VDII 80
D++
Sbjct: 283 NDLV 286
>sp|A5VJE7|DNAK_LACRD Chaperone protein DnaK OS=Lactobacillus reuteri (strain DSM 20016)
GN=dnaK PE=3 SV=1
Length = 621
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 17 DLQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASKAGDLNAMRMREKELAAVKINAAD 76
DL Q AL +L D E + D + VQEA S+ AG+ + + EK L+ + N
Sbjct: 224 DLSQDKMALQRLKDAAEKAKKDLSGVQEAQISLPFISAGENGPLHL-EKTLSRAQFNQLT 282
Query: 77 VDII 80
D++
Sbjct: 283 NDLV 286
>sp|Q5P8D0|TRMA_AROAE tRNA (uracil(54)-C(5))-methyltransferase OS=Aromatoleum aromaticum
(strain EbN1) GN=trmA PE=3 SV=1
Length = 368
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 24 ALDKLTDRVEDRQLDSTRVQEAMASIAASKAGDLNAMRMREKELAA 69
AL L DRV ++ T V+ A ++AA+ G++ +RM E++A
Sbjct: 223 ALAPLFDRVLATEVSKTSVEAAHYNLAANDIGNVAMVRMSSDEISA 268
>sp|Q6BSN9|NACA_DEBHA Nascent polypeptide-associated complex subunit alpha
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=EGD2 PE=3 SV=1
Length = 180
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 72 INAADVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109
++A D+DII + ++ + A + LR H GD V AI L
Sbjct: 142 LDAKDIDIIVEQTQVSRAKAVKALRVHDGDMVNAIMEL 179
>sp|A5DXK7|NACA_LODEL Nascent polypeptide-associated complex subunit alpha
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=EGD2 PE=3
SV=1
Length = 182
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 72 INAADVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109
IN D+D+I + + + A + L++H GD V A+ L
Sbjct: 144 INPKDIDLIVEQTRVSRGSAVKALKKHDGDMVNALMEL 181
>sp|Q4K6U2|HSCA_PSEF5 Chaperone protein HscA homolog OS=Pseudomonas fluorescens (strain
Pf-5 / ATCC BAA-477) GN=hscA PE=3 SV=1
Length = 620
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 8 EVDRIVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQEAMAS 48
E+ R D ++QQ+K L ++TD R+LDST V+ A+A
Sbjct: 573 ELMRGTDGYAIEQQTKRLSQVTDAFAARRLDST-VKAALAG 612
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.326
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,946,595
Number of Sequences: 539616
Number of extensions: 1152462
Number of successful extensions: 6069
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 6009
Number of HSP's gapped (non-prelim): 157
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)