Query 033806
Match_columns 111
No_of_seqs 142 out of 203
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 10:38:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tr8_A Conserved protein (MTH1 99.4 5.9E-13 2E-17 93.3 5.3 41 70-110 62-102 (102)
2 1wj7_A Hypothetical protein (R 97.8 2.4E-05 8.1E-10 55.2 5.3 37 74-110 40-76 (104)
3 2cp9_A EF-TS, EF-TSMT, elongat 97.7 5.9E-05 2E-09 49.0 5.5 40 70-109 6-45 (64)
4 1z96_A DNA-damage, UBA-domain 97.2 0.00082 2.8E-08 37.9 4.9 35 74-109 5-39 (40)
5 2g3q_A Protein YBL047C; endocy 97.0 0.00092 3.1E-08 38.9 4.1 36 74-110 5-40 (43)
6 1wiv_A UBP14, ubiquitin-specif 96.8 0.0029 9.8E-08 41.2 5.5 39 71-110 27-65 (73)
7 1wji_A Tudor domain containing 96.7 0.0029 9.9E-08 40.2 5.2 39 71-110 7-45 (63)
8 2dak_A Ubiquitin carboxyl-term 96.7 0.0026 8.8E-08 40.0 4.9 39 71-110 7-45 (63)
9 1veg_A NEDD8 ultimate buster-1 96.6 0.0043 1.5E-07 41.8 5.6 41 69-110 25-65 (83)
10 2cpw_A CBL-interacting protein 96.5 0.0048 1.6E-07 39.2 5.1 38 72-110 18-56 (64)
11 1vg5_A RSGI RUH-014, rhomboid 96.4 0.0062 2.1E-07 40.0 5.4 39 71-110 27-65 (73)
12 1whc_A RSGI RUH-027, UBA/UBX 3 96.4 0.0053 1.8E-07 38.9 4.9 40 70-110 6-46 (64)
13 1ify_A HHR23A, UV excision rep 96.4 0.0048 1.6E-07 37.2 4.2 35 75-110 10-44 (49)
14 2dai_A Ubadc1, ubiquitin assoc 96.3 0.0083 2.8E-07 40.0 5.6 40 70-110 26-65 (83)
15 2dag_A Ubiquitin carboxyl-term 96.3 0.0097 3.3E-07 38.8 5.6 40 70-110 6-46 (74)
16 2ekk_A UBA domain from E3 ubiq 96.3 0.0091 3.1E-07 35.3 5.0 39 70-110 6-44 (47)
17 1wgn_A UBAP1, ubiquitin associ 96.2 0.0057 1.9E-07 39.8 4.0 35 74-109 20-54 (63)
18 2crn_A Ubash3A protein; compac 96.0 0.011 3.9E-07 37.5 4.8 41 69-110 5-46 (64)
19 2jy5_A Ubiquilin-1; UBA, alter 95.8 0.014 4.6E-07 35.6 4.4 36 74-110 13-49 (52)
20 2knz_A Ubiquilin-4; cytoplasm, 95.7 0.015 5.2E-07 35.4 4.1 34 76-110 14-48 (53)
21 2dkl_A Trinucleotide repeat co 95.5 0.017 5.8E-07 38.7 4.2 38 72-110 20-57 (85)
22 1wgl_A TOLL-interacting protei 95.4 0.03 1E-06 35.2 4.9 41 70-110 6-47 (59)
23 2lbc_A Ubiquitin carboxyl-term 95.3 0.037 1.3E-06 38.4 5.7 38 72-110 77-114 (126)
24 2bwb_A Ubiquitin-like protein 95.0 0.043 1.5E-06 32.7 4.5 34 76-110 10-44 (46)
25 1vek_A UBP14, ubiquitin-specif 94.9 0.063 2.2E-06 35.7 5.6 41 69-110 25-66 (84)
26 1otr_A Protein CUE2; protein-p 94.3 0.055 1.9E-06 33.1 4.0 37 74-110 5-42 (49)
27 2dah_A Ubiquilin-3; UBA domain 94.2 0.071 2.4E-06 32.8 4.3 35 75-110 11-46 (54)
28 1wr1_B Ubiquitin-like protein 94.2 0.071 2.4E-06 33.4 4.3 34 76-110 20-54 (58)
29 1vej_A Riken cDNA 4931431F19; 94.1 0.071 2.4E-06 35.0 4.4 36 74-110 30-66 (74)
30 2lbc_A Ubiquitin carboxyl-term 94.0 0.067 2.3E-06 37.1 4.4 38 72-110 2-40 (126)
31 4ae4_A Ubiquitin-associated pr 93.7 0.062 2.1E-06 37.8 3.7 35 75-110 78-112 (118)
32 2cp8_A NEXT to BRCA1 gene 1 pr 93.6 0.073 2.5E-06 33.3 3.6 31 80-110 15-46 (54)
33 1v92_A NSFL1 cofactor P47; 3-h 93.2 0.17 5.7E-06 29.0 4.5 34 76-109 8-41 (46)
34 2cwb_A Chimera of immunoglobul 92.7 0.13 4.5E-06 36.0 4.1 35 75-110 68-103 (108)
35 2dna_A Unnamed protein product 92.4 0.13 4.3E-06 33.4 3.5 33 77-110 23-56 (67)
36 2dal_A Protein KIAA0794; FAS a 91.7 0.38 1.3E-05 29.9 5.0 35 75-109 17-51 (62)
37 3k9o_A Ubiquitin-conjugating e 89.4 0.39 1.3E-05 35.5 4.2 34 76-110 166-199 (201)
38 2dzl_A Protein FAM100B; UBA-li 89.3 0.78 2.7E-05 29.0 5.0 35 76-110 20-54 (66)
39 1dv0_A DNA repair protein HHR2 89.0 0.34 1.2E-05 28.7 2.9 34 76-110 7-40 (47)
40 2d9s_A CBL E3 ubiquitin protei 89.0 0.64 2.2E-05 29.1 4.3 29 76-105 12-40 (53)
41 2ooa_A E3 ubiquitin-protein li 88.9 0.69 2.4E-05 28.8 4.3 30 75-105 13-42 (52)
42 2dhy_A CUE domain-containing p 88.0 1.2 4.1E-05 28.6 5.2 35 76-110 21-56 (67)
43 2dam_A ETEA protein; KIAA0887, 87.4 1.4 4.7E-05 27.9 5.2 35 76-110 21-56 (67)
44 3e21_A HFAF1, FAS-associated f 87.3 0.59 2E-05 27.9 3.2 35 75-109 7-42 (45)
45 4dbg_B Ring finger protein 31; 81.2 1.1 3.9E-05 33.5 3.1 70 32-110 24-99 (162)
46 4ae4_A Ubiquitin-associated pr 81.1 2.1 7.1E-05 29.8 4.3 29 81-109 15-43 (118)
47 1xb2_B EF-TS, elongation facto 80.1 1.8 6.2E-05 34.5 4.2 38 72-109 3-40 (291)
48 1aip_C EF-TS, elongation facto 78.0 3.8 0.00013 31.2 5.2 36 74-109 4-39 (196)
49 3e46_A Ubiquitin-conjugating e 76.7 2.9 0.0001 32.4 4.3 29 82-110 223-251 (253)
50 4dbg_B Ring finger protein 31; 74.3 2.4 8.1E-05 31.8 3.1 34 77-110 106-139 (162)
51 1oqy_A HHR23A, UV excision rep 72.9 1.5 5.1E-05 35.8 1.9 37 73-110 168-204 (368)
52 3ihp_A Ubiquitin carboxyl-term 70.5 5.5 0.00019 35.4 5.1 38 71-109 718-755 (854)
53 1oai_A Nuclear RNA export fact 69.9 11 0.00037 23.2 5.0 35 76-110 10-44 (59)
54 2qsf_X RAD23, UV excision repa 64.4 15 0.00051 27.2 5.7 42 69-110 123-166 (171)
55 2cos_A Serine/threonine protei 64.4 5.1 0.00017 25.0 2.6 36 71-107 7-43 (54)
56 2juj_A E3 ubiquitin-protein li 64.0 7.6 0.00026 24.4 3.4 30 75-105 9-38 (56)
57 2oo9_A E3 ubiquitin-protein li 63.2 14 0.00047 22.4 4.3 30 75-105 6-35 (46)
58 1nri_A Hypothetical protein HI 61.9 1.6 5.6E-05 33.7 0.0 27 80-106 278-304 (306)
59 1nri_A Hypothetical protein HI 61.5 2.4 8.3E-05 32.7 0.9 34 76-109 247-280 (306)
60 1oqy_A HHR23A, UV excision rep 59.1 3.7 0.00013 33.4 1.6 41 70-110 319-361 (368)
61 2di0_A Activating signal coint 57.4 33 0.0011 22.2 5.7 40 71-110 7-51 (71)
62 3bq3_A Defective in cullin ned 56.6 15 0.00052 28.7 4.7 34 76-109 18-51 (270)
63 3k6g_A Telomeric repeat-bindin 53.5 20 0.00069 25.2 4.4 36 74-109 14-49 (111)
64 2jp7_A MRNA export factor MEX6 51.3 27 0.00092 21.4 4.3 35 76-110 9-43 (57)
65 1q02_A Sequestosome 1; helical 34.1 33 0.0011 21.2 2.7 27 83-109 19-47 (52)
66 4ham_A LMO2241 protein; struct 31.3 34 0.0012 22.8 2.7 20 78-97 42-61 (134)
67 3rhi_A DNA-binding protein HU; 28.4 52 0.0018 21.0 3.1 32 75-106 8-39 (93)
68 1p3q_Q VPS9P, vacuolar protein 27.9 15 0.00052 22.6 0.4 35 76-110 15-50 (54)
69 3m8j_A FOCB protein; all-alpha 27.8 54 0.0018 22.9 3.3 36 63-98 21-56 (111)
70 3tqn_A Transcriptional regulat 27.6 57 0.002 21.1 3.3 22 76-97 35-56 (113)
71 1b8z_A Protein (histonelike pr 27.3 57 0.002 20.4 3.1 30 77-106 7-36 (90)
72 1tte_A Ubiquitin-conjugating e 27.1 71 0.0024 23.8 4.1 31 71-102 167-197 (215)
73 1mul_A NS2, HU-2, DNA binding 26.5 61 0.0021 20.4 3.1 30 77-106 7-36 (90)
74 4gfj_A Topoisomerase V; helix- 25.9 2E+02 0.007 25.2 7.1 76 25-100 385-490 (685)
75 1vdl_A Ubiquitin carboxyl-term 25.3 53 0.0018 21.9 2.7 20 91-110 43-62 (80)
76 3avx_A Elongation factor TS, e 25.1 11 0.00036 35.9 -1.0 39 71-109 3-41 (1289)
77 1hw1_A FADR, fatty acid metabo 24.9 49 0.0017 23.5 2.7 20 78-97 35-54 (239)
78 1tc3_C Protein (TC3 transposas 24.6 76 0.0026 16.0 2.9 22 77-98 24-45 (51)
79 1p71_A DNA-binding protein HU; 24.4 68 0.0023 20.3 3.1 30 77-106 7-36 (94)
80 2b0l_A GTP-sensing transcripti 23.9 74 0.0025 20.6 3.3 22 76-97 45-66 (102)
81 2xvc_A ESCRT-III, SSO0910; cel 23.9 71 0.0024 20.1 3.0 22 76-97 27-48 (59)
82 3c4i_A DNA-binding protein HU 23.8 70 0.0024 20.6 3.1 30 77-106 7-36 (99)
83 2o97_B NS1, HU-1, DNA-binding 23.7 64 0.0022 20.3 2.9 30 77-106 7-36 (90)
84 3neu_A LIN1836 protein; struct 23.2 75 0.0026 21.0 3.3 22 76-97 39-60 (125)
85 3bny_A Aristolochene synthase; 23.0 79 0.0027 23.5 3.7 25 75-99 243-267 (320)
86 1sxj_B Activator 1 37 kDa subu 22.8 1.8E+02 0.0061 20.7 5.4 39 71-109 165-209 (323)
87 3by6_A Predicted transcription 22.5 62 0.0021 21.5 2.7 22 76-97 37-58 (126)
88 1owf_A IHF-alpha, integration 22.4 78 0.0027 20.3 3.1 30 77-106 9-38 (99)
89 3e7l_A Transcriptional regulat 22.4 98 0.0034 18.0 3.4 23 87-109 20-42 (63)
90 2ek5_A Predicted transcription 22.3 63 0.0022 21.7 2.8 21 77-97 31-51 (129)
91 2di3_A Bacterial regulatory pr 22.3 56 0.0019 23.5 2.6 19 79-97 33-51 (239)
92 1jko_C HIN recombinase, DNA-in 22.0 44 0.0015 17.5 1.6 22 77-98 24-45 (52)
93 2w7n_A TRFB transcriptional re 21.5 68 0.0023 21.5 2.7 23 76-98 36-58 (101)
94 3tkz_A Tyrosine-protein phosph 21.1 57 0.002 20.8 2.3 17 85-101 13-31 (109)
95 1veg_A NEDD8 ultimate buster-1 21.0 1.4E+02 0.0048 19.5 4.1 40 65-104 34-73 (83)
96 3sxy_A Transcriptional regulat 20.7 63 0.0022 22.8 2.6 21 77-97 38-58 (218)
97 2pmy_A RAS and EF-hand domain- 20.6 1.1E+02 0.0038 18.1 3.4 30 70-99 42-71 (91)
98 1di1_A Aristolochene synthase; 20.1 97 0.0033 22.6 3.6 25 75-99 229-253 (300)
No 1
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=99.36 E-value=5.9e-13 Score=93.34 Aligned_cols=41 Identities=29% Similarity=0.470 Sum_probs=39.3
Q ss_pred cCCChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 70 VKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 70 v~V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
++|+.+||+|||+|++|||.+|+++|++|+||+++||+.|+
T Consensus 62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 62 MEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 78999999999999999999999999999999999999985
No 2
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.84 E-value=2.4e-05 Score=55.19 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=35.2
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 74 AADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 74 ~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
.+||.+||+.+|+|+..|+.+|.+++||+..||..|+
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Ll 76 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLL 76 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999886
No 3
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.74 E-value=5.9e-05 Score=48.98 Aligned_cols=40 Identities=13% Similarity=0.001 Sum_probs=37.6
Q ss_pred cCCChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHH
Q 033806 70 VKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 70 v~V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L 109 (111)
..|+.++|..|.++++++...+.++|.+++||+.+||..|
T Consensus 6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L 45 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL 45 (64)
T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4688999999999999999999999999999999999876
No 4
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.18 E-value=0.00082 Score=37.95 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=30.6
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHH
Q 033806 74 AADVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 74 ~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L 109 (111)
.+.|..++. ||.++..|+++|+.++||+-.|+-.|
T Consensus 5 ~~~i~~L~~-mGf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVS-MGFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 456888876 69999999999999999999998765
No 5
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.00 E-value=0.00092 Score=38.87 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=30.9
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 74 AADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 74 ~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
.+.|+.|++ ||.++..|+++|+.++||+-.|+--|+
T Consensus 5 e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 5 SLAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 456777764 999999999999999999999987764
No 6
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.77 E-value=0.0029 Score=41.23 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=34.6
Q ss_pred CCChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 71 KINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 71 ~V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
.++.+.|+.|+ +||.++..|+++||.++||+-.|+--|+
T Consensus 27 ~~~~~~v~~L~-~MGF~~~~a~~AL~~t~~nve~Ave~L~ 65 (73)
T 1wiv_A 27 DIDQSSVDTLL-SFGFAEDVARKALKASGGDIEKATDWVF 65 (73)
T ss_dssp SSCHHHHHHHH-HHTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 57788898887 6999999999999999999999987664
No 7
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.74 E-value=0.0029 Score=40.21 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=34.0
Q ss_pred CCChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 71 KINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 71 ~V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
.++++.|+.|+ +||.++..|+++|+.++||+-.|+--|+
T Consensus 7 ~~~~~~I~~L~-~MGF~~~~a~~AL~~~~~nve~A~e~L~ 45 (63)
T 1wji_A 7 GVDEKALKHIT-EMGFSKEASRQALMDNGNNLEAALNVLL 45 (63)
T ss_dssp SSCHHHHHHHH-TTTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36778888887 5999999999999999999999987664
No 8
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.73 E-value=0.0026 Score=39.98 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=33.8
Q ss_pred CCChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 71 KINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 71 ~V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
.++.+.|+.|++ ||.++..|+++||.++||+-.|+--|+
T Consensus 7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~ 45 (63)
T 2dak_A 7 GPPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVDWIF 45 (63)
T ss_dssp CCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467788888886 999999999999999999988887664
No 9
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.61 E-value=0.0043 Score=41.84 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=35.1
Q ss_pred hcCCChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 69 AVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 69 ~v~V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
...++.+.|+.|| +||.++..|+++||.++||+-.|+--|.
T Consensus 25 ~~~~~ee~I~~Lv-~MGF~~~~A~~AL~~t~gdve~A~e~L~ 65 (83)
T 1veg_A 25 QASPSQESINQLV-YMGFDTVVAEAALRVFGGNVQLAAQTLA 65 (83)
T ss_dssp SCCCCHHHHHHHH-HHSCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3456778898888 5899999999999999999999987664
No 10
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.52 E-value=0.0048 Score=39.18 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=33.3
Q ss_pred CChhhHHHHHHhhCCCHHHHHHHHHHhcC-cHHHHHHHHh
Q 033806 72 INAADVDIIANELELDKKVAERTLREHKG-DAVAAIRHLL 110 (111)
Q Consensus 72 V~~eDV~LI~~elevsk~kA~~aLre~~G-Dvv~Ai~~L~ 110 (111)
++.+.|+.|++ ||.++..|+++|+.++| |+..|+--|+
T Consensus 18 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~ 56 (64)
T 2cpw_A 18 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLF 56 (64)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56777888886 99999999999999999 9999987664
No 11
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.44 E-value=0.0062 Score=40.01 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=33.5
Q ss_pred CCChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 71 KINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 71 ~V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
....+.|+.|+ +||.++..|+++|+.++||+-.|+-.|+
T Consensus 27 ~~~ee~I~~L~-eMGF~r~~a~~AL~~~~~nve~Ave~Ll 65 (73)
T 1vg5_A 27 AASEEQIQKLV-AMGFDRTQVEVALAAADDDLTVAVEILM 65 (73)
T ss_dssp CCCHHHHHHHH-TTTCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cccHHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34567888887 5999999999999999999999998775
No 12
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.44 E-value=0.0053 Score=38.90 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=34.6
Q ss_pred cCCChhhHHHHHHhhCCCHHHHHHHHHHh-cCcHHHHHHHHh
Q 033806 70 VKINAADVDIIANELELDKKVAERTLREH-KGDAVAAIRHLL 110 (111)
Q Consensus 70 v~V~~eDV~LI~~elevsk~kA~~aLre~-~GDvv~Ai~~L~ 110 (111)
..++.+.|+.|++ ||.++..|+++|+.+ +||+..|+--|+
T Consensus 6 ~~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl 46 (64)
T 1whc_A 6 SGAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLM 46 (64)
T ss_dssp CCCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4677888988885 999999999999999 699999987664
No 13
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.37 E-value=0.0048 Score=37.15 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=29.5
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 75 ADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 75 eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
+.|+.|+ +||.++..|+++||.++||+-.|+--|+
T Consensus 10 ~~i~~L~-~MGF~~~~a~~AL~~~~~n~e~A~e~L~ 44 (49)
T 1ify_A 10 TMLTEIM-SMGYERERVVAALRASYNNPHRAVEYLL 44 (49)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHTTTSCSHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4565554 7899999999999999999999987664
No 14
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.33 E-value=0.0083 Score=40.04 Aligned_cols=40 Identities=13% Similarity=0.268 Sum_probs=34.8
Q ss_pred cCCChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 70 VKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 70 v~V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
..++.+.|+.|++ ||.++..|+++|+.++||+..|+--|+
T Consensus 26 ~~~~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~ 65 (83)
T 2dai_A 26 ERVDEAALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLI 65 (83)
T ss_dssp SSCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3467888988885 999999999999999999999987664
No 15
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.27 E-value=0.0097 Score=38.76 Aligned_cols=40 Identities=8% Similarity=0.146 Sum_probs=33.8
Q ss_pred cCCChhhHHHHHHhhCCCHHHHHHHHHHhcC-cHHHHHHHHh
Q 033806 70 VKINAADVDIIANELELDKKVAERTLREHKG-DAVAAIRHLL 110 (111)
Q Consensus 70 v~V~~eDV~LI~~elevsk~kA~~aLre~~G-Dvv~Ai~~L~ 110 (111)
..++.+-|+.|++ ||.++..|+++|+.++| |+..|+--|+
T Consensus 6 ~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~ 46 (74)
T 2dag_A 6 SGLDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVM 46 (74)
T ss_dssp CSSCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3467788888886 99999999999999998 8999987664
No 16
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.26 E-value=0.0091 Score=35.26 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=33.3
Q ss_pred cCCChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 70 VKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 70 v~V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
..++.+.|..|++ ||.++..|+++|+.+ ||+..|+--|+
T Consensus 6 ~~~~~~~v~~L~~-MGF~~~~a~~AL~~~-~n~e~A~~~L~ 44 (47)
T 2ekk_A 6 SGVNQQQLQQLMD-MGFTREHAMEALLNT-STMEQATEYLL 44 (47)
T ss_dssp CSSCHHHHHHHHH-HHCCHHHHHHHHHHS-CSHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHc-CCHHHHHHHHH
Confidence 4577888988886 999999999999999 59988887664
No 17
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.18 E-value=0.0057 Score=39.76 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=30.3
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHH
Q 033806 74 AADVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 74 ~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L 109 (111)
.+.|+.|+ .||.|+..|.++|+.++|||..|+-=|
T Consensus 20 ~e~V~~Lv-sMGFs~~qA~kALKat~~NvErAaDWL 54 (63)
T 1wgn_A 20 RQCVETVV-NMGYSYECVLRAMKKKGENIEQILDYL 54 (63)
T ss_dssp HHHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45788888 799999999999999999999987543
No 18
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.01 E-value=0.011 Score=37.53 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=34.6
Q ss_pred hcCCChhhHHHHHHhhCCCHHHHHHHHHHhcC-cHHHHHHHHh
Q 033806 69 AVKINAADVDIIANELELDKKVAERTLREHKG-DAVAAIRHLL 110 (111)
Q Consensus 69 ~v~V~~eDV~LI~~elevsk~kA~~aLre~~G-Dvv~Ai~~L~ 110 (111)
....+.+.|+-|++ ||.++..|+++|+.++| |+..|+--|+
T Consensus 5 ~~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~ 46 (64)
T 2crn_A 5 SSGSSPSLLEPLLA-MGFPVHTALKALAATGRKTAEEALAWLH 46 (64)
T ss_dssp SCCCSCSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34567788888886 99999999999999987 9999987664
No 19
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=95.84 E-value=0.014 Score=35.59 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=30.8
Q ss_pred hhhHHHHHHhhCC-CHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 74 AADVDIIANELEL-DKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 74 ~eDV~LI~~elev-sk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
.+.|+.|+ +||. ++..++++|+.++||+-.|+-.|.
T Consensus 13 ~~~l~~L~-~MGF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 13 QQQLEQLS-AMGFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHH-HcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34566665 7899 999999999999999999998775
No 20
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=95.66 E-value=0.015 Score=35.42 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=29.1
Q ss_pred hHHHHHHhhCC-CHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 76 DVDIIANELEL-DKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 76 DV~LI~~elev-sk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
.|+.|+ +||. ++..++++|+.++||+-.|+-.|.
T Consensus 14 ~l~~L~-~MGF~~~~~~~~AL~~t~gnve~Ave~L~ 48 (53)
T 2knz_A 14 QLEQLN-SMGFINREANLQALIATGGDINAAIERLL 48 (53)
T ss_dssp HHHHHH-TTTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 355555 7899 999999999999999999998774
No 21
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.48 E-value=0.017 Score=38.74 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=31.9
Q ss_pred CChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 72 INAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 72 V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
++.+-|+.|++ ||.++..|+++|+.++||+..|+--|.
T Consensus 20 ~n~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~ 57 (85)
T 2dkl_A 20 IMSRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALL 57 (85)
T ss_dssp HHHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34566777765 999999999999999999999987765
No 22
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.40 E-value=0.03 Score=35.24 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=37.1
Q ss_pred cCCChhhHHHHHHhh-CCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 70 VKINAADVDIIANEL-ELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 70 v~V~~eDV~LI~~el-evsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
..+..++|..|.+-+ .+++...+..|++++||+-.||..|+
T Consensus 6 ~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL 47 (59)
T 1wgl_A 6 SGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLL 47 (59)
T ss_dssp SSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457788999998888 99999999999999999999999886
No 23
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=95.31 E-value=0.037 Score=38.43 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=33.6
Q ss_pred CChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 72 INAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 72 V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
++.+-|.-|++ ||.++..|+++|+.++||+..|+--|+
T Consensus 77 ~~e~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~ 114 (126)
T 2lbc_A 77 PPEEIVAIITS-MGFQRNQAIQALRATNNNLERALDWIF 114 (126)
T ss_dssp CCHHHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 66778888875 999999999999999999999987765
No 24
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=94.97 E-value=0.043 Score=32.71 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=27.9
Q ss_pred hHHHHHHhhCC-CHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 76 DVDIIANELEL-DKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 76 DV~LI~~elev-sk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
-|+-|+ +||. ++..+.++|+.++||+-.|+-.|.
T Consensus 10 ~i~~L~-~MGF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 10 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 455544 7898 588889999999999999998775
No 25
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.89 E-value=0.063 Score=35.65 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=34.5
Q ss_pred hcCCChhhHHHHHHhhCCCHHHHHHHHHHhc-CcHHHHHHHHh
Q 033806 69 AVKINAADVDIIANELELDKKVAERTLREHK-GDAVAAIRHLL 110 (111)
Q Consensus 69 ~v~V~~eDV~LI~~elevsk~kA~~aLre~~-GDvv~Ai~~L~ 110 (111)
...++.+-|+.|++ ||.++..|+++|+.++ ||+-.|+--|+
T Consensus 25 ~~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~ 66 (84)
T 1vek_A 25 QPVANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLL 66 (84)
T ss_dssp CCCCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45577888988885 9999999999999996 79999987664
No 26
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=94.35 E-value=0.055 Score=33.08 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=32.5
Q ss_pred hhhHHHHHHhh-CCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 74 AADVDIIANEL-ELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 74 ~eDV~LI~~el-evsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
.++|.+|.+=| .|++..+...|+.++||+-.|+..|+
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL 42 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLL 42 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 36788877765 89999999999999999999998876
No 27
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.19 E-value=0.071 Score=32.76 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=27.6
Q ss_pred hhHHHHHHhhCCCH-HHHHHHHHHhcCcHHHHHHHHh
Q 033806 75 ADVDIIANELELDK-KVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 75 eDV~LI~~elevsk-~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
+-|+.|+ +||.+. ..++++|+.++||+-.||-.|.
T Consensus 11 ~~l~~L~-~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~ 46 (54)
T 2dah_A 11 VQLEQLR-SMGFLNREANLQALIATGGDVDAAVEKLR 46 (54)
T ss_dssp HHHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3455554 789965 4569999999999999998775
No 28
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=94.16 E-value=0.071 Score=33.36 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=28.0
Q ss_pred hHHHHHHhhCC-CHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 76 DVDIIANELEL-DKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 76 DV~LI~~elev-sk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
-|+-|+ +||. ++..++++|+.++||+-.|+-.|.
T Consensus 20 qi~~L~-~MGF~d~~~~~~AL~~~~gnve~Ave~L~ 54 (58)
T 1wr1_B 20 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSLL 54 (58)
T ss_dssp HHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 455554 7898 588889999999999999998775
No 29
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.12 E-value=0.071 Score=35.03 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=29.9
Q ss_pred hhhHHHHHHhhCC-CHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 74 AADVDIIANELEL-DKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 74 ~eDV~LI~~elev-sk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
.+-|+.|+ +||. ++..++++|+.++||+-.||-.|.
T Consensus 30 e~qi~qL~-eMGF~dr~~~~~AL~~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 30 QQELEELK-ALGFANRDANLQALVATDGDIHAAIEMLL 66 (74)
T ss_dssp HHHHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34566655 7898 689999999999999999998875
No 30
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=94.03 E-value=0.067 Score=37.09 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=31.8
Q ss_pred CChhhHHHHHHhhCCCHHHHHHHHHHhcC-cHHHHHHHHh
Q 033806 72 INAADVDIIANELELDKKVAERTLREHKG-DAVAAIRHLL 110 (111)
Q Consensus 72 V~~eDV~LI~~elevsk~kA~~aLre~~G-Dvv~Ai~~L~ 110 (111)
|+++.|..+++ ||.++..|+++|+.++| |+..||--|+
T Consensus 2 ~d~~~l~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~ 40 (126)
T 2lbc_A 2 IDESSVMQLAE-MGFPLEACRKAVYFTGNMGAEVAFNWII 40 (126)
T ss_dssp CCTHHHHHHHT-TSSCCHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56777888776 99999999999999966 9999886653
No 31
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=93.70 E-value=0.062 Score=37.76 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=29.2
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 75 ADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 75 eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
+.|..+ .+||.+...|+++|+.|+||+-.|+--|.
T Consensus 78 ~~v~~L-~eMGF~~~~a~~AL~~~~nd~erAlewL~ 112 (118)
T 4ae4_A 78 QLMSKF-KEMGFELKDIKEVLLLHNNDQDNALEDLM 112 (118)
T ss_dssp HHHHHH-HHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHH-HHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 445544 47999999999999999999999987664
No 32
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.62 E-value=0.073 Score=33.34 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=27.8
Q ss_pred HHHhhCC-CHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 80 IANELEL-DKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 80 I~~elev-sk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
...+||. ++..-.++|+.|+||+-.||..|+
T Consensus 15 ~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll 46 (54)
T 2cp8_A 15 HLFEMGFCDRQLNLRLLKKHNYNILQVVTELL 46 (54)
T ss_dssp HHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3567887 999999999999999999999986
No 33
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=93.20 E-value=0.17 Score=29.04 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=30.2
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHH
Q 033806 76 DVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L 109 (111)
-|.-.+.-++++...|...|..|++|+..||..+
T Consensus 8 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 8 ALREFVAVTGAEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4666778889999999999999999999999765
No 34
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=92.69 E-value=0.13 Score=35.96 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=28.7
Q ss_pred hhHHHHHHhhCC-CHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 75 ADVDIIANELEL-DKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 75 eDV~LI~~elev-sk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
+-|+- +.+||. ++..+.++|+.++||+-.||-.|.
T Consensus 68 ~qL~q-L~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~ 103 (108)
T 2cwb_A 68 PQLQQ-LRDMGIQDDELSLRALQATGGDIQAALELIF 103 (108)
T ss_dssp HHHHH-HHTTTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHH-HHHcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34443 457998 578999999999999999998875
No 35
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.43 E-value=0.13 Score=33.38 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=26.0
Q ss_pred HHHHHHhhCC-CHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 77 VDIIANELEL-DKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 77 V~LI~~elev-sk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
|..| .+||. .+....++|+.++|||..||-.|.
T Consensus 23 l~qL-~~MGF~d~~an~~AL~at~Gnve~Ave~L~ 56 (67)
T 2dna_A 23 MECL-QAMGFVNYNANLQALIATDGDTNAAIYKLK 56 (67)
T ss_dssp HHHH-HHHTCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHH-HHcCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4444 47896 556669999999999999998775
No 36
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.65 E-value=0.38 Score=29.92 Aligned_cols=35 Identities=9% Similarity=0.100 Sum_probs=31.2
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHH
Q 033806 75 ADVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 75 eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L 109 (111)
+-|.-.|.-++++...|+..|..|++|+..||..+
T Consensus 17 e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 17 GLIQQFTTITGASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44777788899999999999999999999999876
No 37
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=89.41 E-value=0.39 Score=35.54 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=28.7
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 76 DVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
-|+.+ .+||.++.+|+.+|+.++||+-.|+-.|+
T Consensus 166 kV~~l-~~MGf~~~~a~~AL~~~~wd~~~A~e~L~ 199 (201)
T 3k9o_A 166 KIENL-CAMGFDRNAVIVALSSKSWDVETATELLL 199 (201)
T ss_dssp HHHHH-HTTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHH-HHcCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 34444 46799999999999999999999998875
No 38
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.28 E-value=0.78 Score=29.05 Aligned_cols=35 Identities=9% Similarity=0.044 Sum_probs=31.0
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 76 DVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
-|.-.+.-++++...|+..|..+++|+..||..+.
T Consensus 20 ~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff 54 (66)
T 2dzl_A 20 MINQFVLAAGCAADQAKQLLQAAHWQFETALSTFF 54 (66)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 36777888999999999999999999999998763
No 39
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=89.00 E-value=0.34 Score=28.74 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=27.6
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 76 DVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
-|+-|+ .||.++..|+++|..++||+-.|.--|.
T Consensus 7 aI~rL~-~mGF~~~~a~~Al~a~~~n~e~A~~~Lf 40 (47)
T 1dv0_A 7 AIERLK-ALGFPESLVIQAYFACEKNENLAANFLL 40 (47)
T ss_dssp HHTTTT-TTTCCHHHHHHHHTTTTSCHHHHHHHTT
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344443 6899999999999999999998876654
No 40
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=88.96 E-value=0.64 Score=29.06 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=25.2
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHhcCcHHHH
Q 033806 76 DVDIIANELELDKKVAERTLREHKGDAVAA 105 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre~~GDvv~A 105 (111)
-|..+|. +|.||..|+++|.-.+||+.-|
T Consensus 12 ~I~~L~~-lGF~r~~ai~AL~~a~nnve~A 40 (53)
T 2d9s_A 12 EIERLMS-QGYSYQDIQKALVIAHNNIEMA 40 (53)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhcCCHHHH
Confidence 3777775 5999999999999999999665
No 41
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=88.89 E-value=0.69 Score=28.83 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=26.2
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhcCcHHHH
Q 033806 75 ADVDIIANELELDKKVAERTLREHKGDAVAA 105 (111)
Q Consensus 75 eDV~LI~~elevsk~kA~~aLre~~GDvv~A 105 (111)
+-|+-+|. ||-||..|.++|+..+||+.-|
T Consensus 13 ~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~A 42 (52)
T 2ooa_A 13 AKIAKLMG-EGYAFEEVKRALEIAQNNVEVA 42 (52)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHH
Confidence 67888875 6999999999999999999665
No 42
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.02 E-value=1.2 Score=28.56 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=28.8
Q ss_pred hHHHHHHhh-CCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 76 DVDIIANEL-ELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 76 DV~LI~~el-evsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
.|+-|.+-| .+++..-+..|+.++||+-.||..|+
T Consensus 21 ~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL 56 (67)
T 2dhy_A 21 AMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLL 56 (67)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344454445 89999999999999999999999886
No 43
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.41 E-value=1.4 Score=27.85 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=29.8
Q ss_pred hHHHHHHhhC-CCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 76 DVDIIANELE-LDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 76 DV~LI~~ele-vsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
-|.-.+.-++ .+...|+..|..|++|+..||-.+.
T Consensus 21 ~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 21 KLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3666677788 8999999999999999999998763
No 44
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=87.29 E-value=0.59 Score=27.95 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=28.8
Q ss_pred hhHHHHHHhhCCCH-HHHHHHHHHhcCcHHHHHHHH
Q 033806 75 ADVDIIANELELDK-KVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 75 eDV~LI~~elevsk-~kA~~aLre~~GDvv~Ai~~L 109 (111)
+-|.-.++-+|++. ..|+..|-.||+|+..|+..+
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f 42 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAINGV 42 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 34555667789995 999999999999999998764
No 45
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=81.21 E-value=1.1 Score=33.48 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=42.8
Q ss_pred HHhhhcCHHHHHHHHHHHHHhhhcc-hHHHHHhHHHHhhcCCChhhHHHHHHhh-----CCCHHHHHHHHHHhcCcHHHH
Q 033806 32 VEDRQLDSTRVQEAMASIAASKAGD-LNAMRMREKELAAVKINAADVDIIANEL-----ELDKKVAERTLREHKGDAVAA 105 (111)
Q Consensus 32 ~Eekeid~eai~~Am~~l~~~~~~~-~~a~~~~e~el~~v~V~~eDV~LI~~el-----evsk~kA~~aLre~~GDvv~A 105 (111)
+|-.-++++.|+.||.- .....+- .- + .++..+ -+-|.-+..+. .+|...|.++|+.|+||+-+|
T Consensus 24 aEk~GfspEEV~aAl~~-~g~~~P~~WL----k-~ewp~l---l~~V~~la~~~~~~~g~~s~~EAr~Aw~~~~Gd~~~A 94 (162)
T 4dbg_B 24 GEAAGACPEEIFSALQY-SGTEVPLQWL----R-SELPYV---LEMVAELAGQQDPGLGAFSCQEARRAWLDRHGNLDEA 94 (162)
T ss_dssp TCCSCCCHHHHHHHHHH-HTCCCCHHHH----H-HHSCSH---HHHHHHHHHHHCGGGCCCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCCCHHHHHHHHHh-cCCCCcHHHH----H-HHHHHH---HHHHHHHHHHhCCCCCcccHHHHHHHHHHccCChHHH
Confidence 34456899999999943 2222210 10 0 011110 12444444444 268999999999999999999
Q ss_pred HHHHh
Q 033806 106 IRHLL 110 (111)
Q Consensus 106 i~~L~ 110 (111)
+...+
T Consensus 95 v~~ci 99 (162)
T 4dbg_B 95 VEECV 99 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 46
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=81.14 E-value=2.1 Score=29.85 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=24.7
Q ss_pred HHhhCCCHHHHHHHHHHhcCcHHHHHHHH
Q 033806 81 ANELELDKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 81 ~~elevsk~kA~~aLre~~GDvv~Ai~~L 109 (111)
+-+||.++..+.++|+.+|+|+..||--|
T Consensus 15 l~~MGFp~~~~~kAl~~~g~~~e~amewL 43 (118)
T 4ae4_A 15 VVNMGYSYECVLRAMKAAGANIEQILDYL 43 (118)
T ss_dssp HHHTTCCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 45789999999999999999987776554
No 47
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=80.12 E-value=1.8 Score=34.49 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=34.1
Q ss_pred CChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHH
Q 033806 72 INAADVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 72 V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L 109 (111)
|++++|.-+=+.+|.+--...++|.+++||+.+|+--|
T Consensus 3 ~ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~L 40 (291)
T 1xb2_B 3 SSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWL 40 (291)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55788889999999999999999999999999998655
No 48
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=78.03 E-value=3.8 Score=31.21 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=32.0
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHH
Q 033806 74 AADVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 74 ~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L 109 (111)
.++|.-+=+.+|.+--...++|.+++||+.+|+--|
T Consensus 4 a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~L 39 (196)
T 1aip_C 4 MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLL 39 (196)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 457888888999999999999999999999998755
No 49
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=76.65 E-value=2.9 Score=32.43 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=26.7
Q ss_pred HhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 82 NELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 82 ~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
.++|.++..|+.+|..+++|+-.|+-.|+
T Consensus 223 ~~mgf~~~~~~~al~~~nWd~~~A~e~L~ 251 (253)
T 3e46_A 223 CAAGFDRNAVIVALSSKSWDVETATELLL 251 (253)
T ss_dssp HHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 46799999999999999999999998875
No 50
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=74.30 E-value=2.4 Score=31.75 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=26.9
Q ss_pred HHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 77 VDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 77 V~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
|..|+.-=..++....++|+.|+||+..||..|-
T Consensus 106 ~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 106 VQELQSLGFGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3445555566788889999999999999998874
No 51
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=72.88 E-value=1.5 Score=35.76 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=31.1
Q ss_pred ChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 73 NAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 73 ~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
..+-|.-|+ +||.+|..++++||.++||+-.|+-.|+
T Consensus 168 ~~~~i~~l~-~MGf~~~~~~~AL~a~~nn~~~A~e~L~ 204 (368)
T 1oqy_A 168 YETMLTEIM-SMGYERERVVAALRASYNNPHRAVEYLL 204 (368)
T ss_dssp HHHHHHHHH-TTTCCSHHHHHHHHHSCSSTTHHHHTTT
T ss_pred hHHHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344566665 7999999999999999999999987774
No 52
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=70.47 E-value=5.5 Score=35.41 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=32.4
Q ss_pred CCChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHH
Q 033806 71 KINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 71 ~V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L 109 (111)
.++++.|..|. .||.+..+|+++|++++||+..|+--+
T Consensus 718 ~~~~e~i~~l~-~mGf~~~~a~~aL~~t~~~~eraidwl 755 (854)
T 3ihp_A 718 PPPEDCVTTIV-SMGFSRDQALKALRATNNSLERAVDWI 755 (854)
T ss_dssp -CCHHHHHHHH-TTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHhhcCcHHHHHHhh
Confidence 46788898875 489999999999999999999998543
No 53
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=69.89 E-value=11 Score=23.20 Aligned_cols=35 Identities=6% Similarity=0.160 Sum_probs=31.4
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 76 DVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
=|..+..++++...=+++.|..++-|+-.|+..+.
T Consensus 10 mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~ 44 (59)
T 1oai_A 10 MLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 44 (59)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46778899999999999999999999999998764
No 54
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=64.42 E-value=15 Score=27.24 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=32.9
Q ss_pred hcCCChhhHHHH--HHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 69 AVKINAADVDII--ANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 69 ~v~V~~eDV~LI--~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
.+.+++++-+-| ..+|+.+|..++++|..|++|.--|.-.|+
T Consensus 123 ~i~~tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~ 166 (171)
T 2qsf_X 123 QVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILF 166 (171)
T ss_dssp CCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467777554443 236799999999999999999998877665
No 55
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=64.41 E-value=5.1 Score=25.04 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=27.1
Q ss_pred CCChhhHHHHHHhhCCCHHHHHHHHHHhcC-cHHHHHH
Q 033806 71 KINAADVDIIANELELDKKVAERTLREHKG-DAVAAIR 107 (111)
Q Consensus 71 ~V~~eDV~LI~~elevsk~kA~~aLre~~G-Dvv~Ai~ 107 (111)
.|+..-++.++ ++|+++..|+.+|+.+|| .|..||-
T Consensus 7 ~vn~qmlq~L~-eMGFd~erae~Alk~Tg~~Gle~Ame 43 (54)
T 2cos_A 7 GVNRQMLQELV-NAGCDQEMAGRALKQTGSRSIEAALE 43 (54)
T ss_dssp SCCHHHHHHHH-HHHCCHHHHHHHHHHHTSCCHHHHHH
T ss_pred hhHHHHHHHHH-HcCCCHHHHHHHHHHhCcccHHHHHH
Confidence 55566665554 789999999999999998 4555554
No 56
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=64.00 E-value=7.6 Score=24.44 Aligned_cols=30 Identities=7% Similarity=0.116 Sum_probs=25.3
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhcCcHHHH
Q 033806 75 ADVDIIANELELDKKVAERTLREHKGDAVAA 105 (111)
Q Consensus 75 eDV~LI~~elevsk~kA~~aLre~~GDvv~A 105 (111)
+-|.-+|+ +|.||..|.++|+-.++||.-|
T Consensus 9 ~~Ia~L~s-mGfsr~da~~AL~ia~Ndv~~A 38 (56)
T 2juj_A 9 SEIENLMS-QGYSYQDIQKALVIAQNNIEMA 38 (56)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTTCSHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhcccHHHH
Confidence 46777775 5999999999999999999654
No 57
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=63.17 E-value=14 Score=22.39 Aligned_cols=30 Identities=7% Similarity=0.116 Sum_probs=24.9
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhcCcHHHH
Q 033806 75 ADVDIIANELELDKKVAERTLREHKGDAVAA 105 (111)
Q Consensus 75 eDV~LI~~elevsk~kA~~aLre~~GDvv~A 105 (111)
+-|..+|+ +|.++..++++|--.+.|+..|
T Consensus 6 ~~I~~L~s-~Gf~~~~~~rAL~ia~Nnie~A 35 (46)
T 2oo9_A 6 SEIENLMS-QGYSYQDIQKALVIAQNNIEMA 35 (46)
T ss_dssp HHHHHHHH-TTBCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhhccHHHH
Confidence 35667775 4999999999999999999764
No 58
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=61.94 E-value=1.6 Score=33.66 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHhhCCCHHHHHHHHHHhcCcHHHHH
Q 033806 80 IANELELDKKVAERTLREHKGDAVAAI 106 (111)
Q Consensus 80 I~~elevsk~kA~~aLre~~GDvv~Ai 106 (111)
+|-..+|+...|++.|..|+|.+..||
T Consensus 278 ~~~~~~~~~~~a~~~l~~~~~~~~~~~ 304 (306)
T 1nri_A 278 MMILSTLSKSEAKVLLERHQGKLRNAL 304 (306)
T ss_dssp ---------------------------
T ss_pred HHHHhCCCHHHHHHHHHHcCCcHHHHh
Confidence 333455555555555555555555554
No 59
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=61.53 E-value=2.4 Score=32.69 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=11.1
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHH
Q 033806 76 DVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L 109 (111)
-...|++.++||+..|+++|..++|++..||.-+
T Consensus 247 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 280 (306)
T 1nri_A 247 AVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMI 280 (306)
T ss_dssp HHHHHHHHSCCCC---------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHH
Confidence 3678899999999999999999999998888654
No 60
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=59.05 E-value=3.7 Score=33.44 Aligned_cols=41 Identities=12% Similarity=0.214 Sum_probs=31.2
Q ss_pred cCCChhhHHHH--HHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 70 VKINAADVDII--ANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 70 v~V~~eDV~LI--~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
+.+.++|-+.| +..||.++..|+++|+.|+||+..|.--|.
T Consensus 319 i~~t~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~ 361 (368)
T 1oqy_A 319 IQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLL 361 (368)
T ss_dssp CCCCTTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHH
T ss_pred ccCCCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 46666555555 236899999999999999999977765553
No 61
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=57.40 E-value=33 Score=22.18 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=31.0
Q ss_pred CCChhhHHHHHHhh-----CCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 71 KINAADVDIIANEL-----ELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 71 ~V~~eDV~LI~~el-----evsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
+++..+++-.++|. .+......+.|..+++|+..+|..|+
T Consensus 7 ~~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LL 51 (71)
T 2di0_A 7 GMCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNIL 51 (71)
T ss_dssp CCSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34555555444444 89999999999999999999998875
No 62
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=56.59 E-value=15 Score=28.74 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=30.4
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHH
Q 033806 76 DVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L 109 (111)
-|.-.|.-++++...|..-|..|+.|+-.|+-.+
T Consensus 18 ~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~f 51 (270)
T 3bq3_A 18 AIESFTSLTKCDPKVSRKYLQRNHWNINYALNDY 51 (270)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3677788899999999999999999999998765
No 63
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=53.49 E-value=20 Score=25.20 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=31.1
Q ss_pred hhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHH
Q 033806 74 AADVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 74 ~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L 109 (111)
..=|.-+|+|+.++-...+++|-.+.||+.+|..-|
T Consensus 14 ~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL 49 (111)
T 3k6g_A 14 IKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFL 49 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHH
Confidence 445778899999999999999999999998876554
No 64
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=51.26 E-value=27 Score=21.39 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=30.7
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 76 DVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
=|.-+..++++...=+.+.|..++=|+-.|+..+.
T Consensus 9 mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~ 43 (57)
T 2jp7_A 9 LLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQ 43 (57)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 36678899999999999999999999999988763
No 65
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=34.13 E-value=33 Score=21.17 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=19.8
Q ss_pred hhCCCHHHH--HHHHHHhcCcHHHHHHHH
Q 033806 83 ELELDKKVA--ERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 83 elevsk~kA--~~aLre~~GDvv~Ai~~L 109 (111)
-||.+-.-. +++|...+|||-+||-.+
T Consensus 19 ~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 19 SMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp TTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 345554444 689999999999998664
No 66
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=31.35 E-value=34 Score=22.81 Aligned_cols=20 Identities=10% Similarity=0.278 Sum_probs=17.5
Q ss_pred HHHHHhhCCCHHHHHHHHHH
Q 033806 78 DIIANELELDKKVAERTLRE 97 (111)
Q Consensus 78 ~LI~~elevsk~kA~~aLre 97 (111)
.-++++++|||...+++|+.
T Consensus 42 r~La~~~gVSr~tVReAl~~ 61 (134)
T 4ham_A 42 REFASRIGVNPNTVSKAYQE 61 (134)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 35899999999999999875
No 67
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=28.39 E-value=52 Score=20.98 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=22.0
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHH
Q 033806 75 ADVDIIANELELDKKVAERTLREHKGDAVAAI 106 (111)
Q Consensus 75 eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai 106 (111)
+=|+.|.+.+++|+..|...|..--.-+.++|
T Consensus 8 eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~L 39 (93)
T 3rhi_A 8 ELIKNVAQNAEISQKEATVVVQTVVESITNTL 39 (93)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 34677788889999888888866544444443
No 68
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=27.93 E-value=15 Score=22.63 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=21.9
Q ss_pred hHHHHHHhh-CCCHHHHHHHHHHhcCcHHHHHHHHh
Q 033806 76 DVDIIANEL-ELDKKVAERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 76 DV~LI~~el-evsk~kA~~aLre~~GDvv~Ai~~L~ 110 (111)
+|+-|..=+ .+++..-+..|+.++|++-.+|-+|+
T Consensus 15 ~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 15 TLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALL 50 (54)
T ss_dssp HHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC---
T ss_pred HHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344444444 78899999999999999976665543
No 69
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=27.80 E-value=54 Score=22.87 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=32.3
Q ss_pred hHHHHhhcCCChhhHHHHHHhhCCCHHHHHHHHHHh
Q 033806 63 REKELAAVKINAADVDIIANELELDKKVAERTLREH 98 (111)
Q Consensus 63 ~e~el~~v~V~~eDV~LI~~elevsk~kA~~aLre~ 98 (111)
+...|-..+|+++...|+++=..+.-.+-+.+||.|
T Consensus 21 k~~~LipG~vsee~F~LLlelS~IrSekII~ALrdy 56 (111)
T 3m8j_A 21 RESALSSGSMSEEQFFLLIGISSIHSDRVILAMKDY 56 (111)
T ss_dssp HHHCCCTTCSCHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred hcCccCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 455677789999999999999999999999999987
No 70
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=27.56 E-value=57 Score=21.15 Aligned_cols=22 Identities=9% Similarity=0.300 Sum_probs=18.6
Q ss_pred hHHHHHHhhCCCHHHHHHHHHH
Q 033806 76 DVDIIANELELDKKVAERTLRE 97 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre 97 (111)
-+.-|+++++||+....++|+.
T Consensus 35 s~~~La~~~~vSr~tvr~al~~ 56 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQS 56 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3567899999999999998865
No 71
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=27.26 E-value=57 Score=20.44 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=21.2
Q ss_pred HHHHHHhhCCCHHHHHHHHHHhcCcHHHHH
Q 033806 77 VDIIANELELDKKVAERTLREHKGDAVAAI 106 (111)
Q Consensus 77 V~LI~~elevsk~kA~~aLre~~GDvv~Ai 106 (111)
|+.|.+..++|+..+...|..--.-+.++|
T Consensus 7 i~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (90)
T 1b8z_A 7 IDRVAKKAGAKKKDVKLILDTILETITEAL 36 (90)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888866554444444
No 72
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=27.14 E-value=71 Score=23.84 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=25.3
Q ss_pred CCChhhHHHHHHhhCCCHHHHHHHHHHhcCcH
Q 033806 71 KINAADVDIIANELELDKKVAERTLREHKGDA 102 (111)
Q Consensus 71 ~V~~eDV~LI~~elevsk~kA~~aLre~~GDv 102 (111)
+++.+-|+.+ .+||.++..++.+|..+|+|-
T Consensus 167 g~~~~~v~~~-~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 167 GIDHDLIDEF-ESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp CCSHHHHHHH-HHHTCCHHHHHHHHHHSCCSS
T ss_pred cccHHHHHHH-HHcCCCHHHHHHHHHHcCCCc
Confidence 4556677764 578999999999999999984
No 73
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=26.47 E-value=61 Score=20.37 Aligned_cols=30 Identities=27% Similarity=0.415 Sum_probs=21.1
Q ss_pred HHHHHHhhCCCHHHHHHHHHHhcCcHHHHH
Q 033806 77 VDIIANELELDKKVAERTLREHKGDAVAAI 106 (111)
Q Consensus 77 V~LI~~elevsk~kA~~aLre~~GDvv~Ai 106 (111)
|+.|.+.+++|+..+...|..--.-+.++|
T Consensus 7 i~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (90)
T 1mul_A 7 IDVIAEKAELSKTQAKAALESTLAAITESL 36 (90)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888866544444444
No 74
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=25.92 E-value=2e+02 Score=25.20 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=45.6
Q ss_pred hhhhhhhHHhhhcCHHHHHHHH----HHHHHhhhcc--hH-------------HHHH---hHHHHhhcC-CCh-------
Q 033806 25 LDKLTDRVEDRQLDSTRVQEAM----ASIAASKAGD--LN-------------AMRM---REKELAAVK-INA------- 74 (111)
Q Consensus 25 LekvTD~~Eekeid~eai~~Am----~~l~~~~~~~--~~-------------a~~~---~e~el~~v~-V~~------- 74 (111)
++.+.++-+++.+++++|..|| .+|+..-... .. .+.. ..++|..|. |+.
T Consensus 385 LeEIe~LYteR~IhPNAIRGAveiqLASLAvkfG~g~eTAe~L~~~agr~l~leqi~rdrEvgkL~SVpGikek~sktL~ 464 (685)
T 4gfj_A 385 LEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLV 464 (685)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHS
T ss_pred cHHhhhhhccCCCCHHHHhhhHhhhhhhhhhhcCCchHHHHHHHHHhcchhhhhhhhhhhhhhcccccccchhhhhcccc
Confidence 3445555677899999999995 7776431111 00 0000 112223222 332
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhcC
Q 033806 75 ADVDIIANELELDKKVAERTLREHKG 100 (111)
Q Consensus 75 eDV~LI~~elevsk~kA~~aLre~~G 100 (111)
+-+.++..=.||.+..|+++|...|+
T Consensus 465 eqeamLtAIaGIGp~tAeRLLEkFGS 490 (685)
T 4gfj_A 465 PGYASLISIRGIDRERAERLLKKYGG 490 (685)
T ss_dssp TTHHHHHTSTTCCHHHHHHHHHHHTS
T ss_pred cceeeeeccCCCCHHHHHHHHHHhcC
Confidence 22467777789999999999988875
No 75
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.27 E-value=53 Score=21.85 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=17.0
Q ss_pred HHHHHHHhcCcHHHHHHHHh
Q 033806 91 AERTLREHKGDAVAAIRHLL 110 (111)
Q Consensus 91 A~~aLre~~GDvv~Ai~~L~ 110 (111)
=..+|+..+||+..|+--|+
T Consensus 43 L~~ALkas~Gdl~~AV~~LT 62 (80)
T 1vdl_A 43 LQQALKDSNGNLELAVAFLT 62 (80)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHh
Confidence 35789999999999987775
No 76
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=25.06 E-value=11 Score=35.92 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=34.4
Q ss_pred CCChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHH
Q 033806 71 KINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 71 ~V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~Ai~~L 109 (111)
.|++++|.-+=+.+|..--...++|.|++||+.+|+--|
T Consensus 3 ~ita~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~L 41 (1289)
T 3avx_A 3 EITASLVKELRERTGAGMMDCKKALTEANGDIELAIENM 41 (1289)
T ss_dssp CSCCSCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 367888999999999999999999999999999998654
No 77
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=24.86 E-value=49 Score=23.47 Aligned_cols=20 Identities=5% Similarity=0.187 Sum_probs=17.2
Q ss_pred HHHHHhhCCCHHHHHHHHHH
Q 033806 78 DIIANELELDKKVAERTLRE 97 (111)
Q Consensus 78 ~LI~~elevsk~kA~~aLre 97 (111)
.-|+++++|||...+++|+.
T Consensus 35 ~eLa~~~gVSR~tVReAL~~ 54 (239)
T 1hw1_A 35 RELSELIGVTRTTLREVLQR 54 (239)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 35689999999999999874
No 78
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=24.62 E-value=76 Score=16.02 Aligned_cols=22 Identities=5% Similarity=0.202 Sum_probs=17.8
Q ss_pred HHHHHHhhCCCHHHHHHHHHHh
Q 033806 77 VDIIANELELDKKVAERTLREH 98 (111)
Q Consensus 77 V~LI~~elevsk~kA~~aLre~ 98 (111)
+.-|+.+|+||+....+.|+..
T Consensus 24 ~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 24 LHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHCcCHHHHHHHHhhH
Confidence 5567889999999888888754
No 79
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=24.45 E-value=68 Score=20.34 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=20.9
Q ss_pred HHHHHHhhCCCHHHHHHHHHHhcCcHHHHH
Q 033806 77 VDIIANELELDKKVAERTLREHKGDAVAAI 106 (111)
Q Consensus 77 V~LI~~elevsk~kA~~aLre~~GDvv~Ai 106 (111)
|+.|.+..++|+..+...|..--.-+.++|
T Consensus 7 i~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (94)
T 1p71_A 7 VDAVAEKASVTKKQADAVLTAALETIIEAV 36 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888866544444443
No 80
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=23.90 E-value=74 Score=20.65 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.6
Q ss_pred hHHHHHHhhCCCHHHHHHHHHH
Q 033806 76 DVDIIANELELDKKVAERTLRE 97 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre 97 (111)
.+.-|+++++||+....++|+.
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~ 66 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRK 66 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3556899999999999999875
No 81
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=23.88 E-value=71 Score=20.11 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=19.7
Q ss_pred hHHHHHHhhCCCHHHHHHHHHH
Q 033806 76 DVDIIANELELDKKVAERTLRE 97 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre 97 (111)
||..+...++|+|..--.+||.
T Consensus 27 dI~~~a~kygV~kdeV~~~Lrr 48 (59)
T 2xvc_A 27 DIEHFSKVYGVEKQEVVKLLEA 48 (59)
T ss_dssp EHHHHHHHHCCCHHHHHHHHHH
T ss_pred eHHHHHHHhCCCHHHHHHHHHH
Confidence 8899999999999998888875
No 82
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=23.83 E-value=70 Score=20.58 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=21.1
Q ss_pred HHHHHHhhCCCHHHHHHHHHHhcCcHHHHH
Q 033806 77 VDIIANELELDKKVAERTLREHKGDAVAAI 106 (111)
Q Consensus 77 V~LI~~elevsk~kA~~aLre~~GDvv~Ai 106 (111)
|+.|.+.+++|+..|...|..--.-+.++|
T Consensus 7 i~~ia~~~~lsk~~~~~~l~~~~~~i~~~L 36 (99)
T 3c4i_A 7 IDVLTQKLGSDRRQATAAVENVVDTIVRAV 36 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888866544444444
No 83
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=23.66 E-value=64 Score=20.30 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=19.9
Q ss_pred HHHHHHhhCCCHHHHHHHHHHhcCcHHHHH
Q 033806 77 VDIIANELELDKKVAERTLREHKGDAVAAI 106 (111)
Q Consensus 77 V~LI~~elevsk~kA~~aLre~~GDvv~Ai 106 (111)
|+.|.+.+++|+..|...|..--.-+.++|
T Consensus 7 i~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (90)
T 2o97_B 7 IDKIAAGADISKAAAGRALDAIIASVTESL 36 (90)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888766544444443
No 84
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=23.19 E-value=75 Score=20.98 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=18.7
Q ss_pred hHHHHHHhhCCCHHHHHHHHHH
Q 033806 76 DVDIIANELELDKKVAERTLRE 97 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre 97 (111)
-+.-|+++++||+...+++|+.
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~ 60 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQE 60 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3567899999999999999875
No 85
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=22.95 E-value=79 Score=23.50 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=20.7
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhc
Q 033806 75 ADVDIIANELELDKKVAERTLREHK 99 (111)
Q Consensus 75 eDV~LI~~elevsk~kA~~aLre~~ 99 (111)
.=|.++|.+.+||.+.|.+.+++.=
T Consensus 243 N~V~~~m~~~g~s~eeA~~~~~~~i 267 (320)
T 3bny_A 243 TSVQILAQEADVTAEAAKRVLFVMC 267 (320)
T ss_dssp SHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4699999999999999988776543
No 86
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.84 E-value=1.8e+02 Score=20.66 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=27.4
Q ss_pred CCChhhHHHHHHh------hCCCHHHHHHHHHHhcCcHHHHHHHH
Q 033806 71 KINAADVDIIANE------LELDKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 71 ~V~~eDV~LI~~e------levsk~kA~~aLre~~GDvv~Ai~~L 109 (111)
+++.+++.-++.+ +.++...+....+.++||+..++..|
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3455666666553 45778888888888899998877644
No 87
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=22.48 E-value=62 Score=21.54 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=18.5
Q ss_pred hHHHHHHhhCCCHHHHHHHHHH
Q 033806 76 DVDIIANELELDKKVAERTLRE 97 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre 97 (111)
-+.-|+++++||+...+++|+.
T Consensus 37 se~~La~~~~vSr~tvr~Al~~ 58 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKE 58 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3566899999999999998875
No 88
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=22.41 E-value=78 Score=20.30 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=21.2
Q ss_pred HHHHHHhhCCCHHHHHHHHHHhcCcHHHHH
Q 033806 77 VDIIANELELDKKVAERTLREHKGDAVAAI 106 (111)
Q Consensus 77 V~LI~~elevsk~kA~~aLre~~GDvv~Ai 106 (111)
|+.|.+..++|+..+...|..--.-+.++|
T Consensus 9 i~~ia~~~~ls~~~~~~vl~~~~~~i~~~L 38 (99)
T 1owf_A 9 SEYLFDKLGLSKRDAKELVELFFEEIRRAL 38 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888866544444444
No 89
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=22.39 E-value=98 Score=18.02 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHhcCcHHHHHHHH
Q 033806 87 DKKVAERTLREHKGDAVAAIRHL 109 (111)
Q Consensus 87 sk~kA~~aLre~~GDvv~Ai~~L 109 (111)
.+.--.++|+.|+|++..|-+.|
T Consensus 20 E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 20 EKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 35667789999999997776544
No 90
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=22.34 E-value=63 Score=21.72 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=18.3
Q ss_pred HHHHHHhhCCCHHHHHHHHHH
Q 033806 77 VDIIANELELDKKVAERTLRE 97 (111)
Q Consensus 77 V~LI~~elevsk~kA~~aLre 97 (111)
+.-|+++++|||...+++|+.
T Consensus 31 e~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 31 TNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 567899999999999998875
No 91
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=22.27 E-value=56 Score=23.45 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=16.8
Q ss_pred HHHHhhCCCHHHHHHHHHH
Q 033806 79 IIANELELDKKVAERTLRE 97 (111)
Q Consensus 79 LI~~elevsk~kA~~aLre 97 (111)
-|++++||||.-.+++|+.
T Consensus 33 ~La~~lgVSRtpVREAL~~ 51 (239)
T 2di3_A 33 ALSETLGVSRSSLREALRV 51 (239)
T ss_dssp HHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 5789999999999999874
No 92
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=22.01 E-value=44 Score=17.45 Aligned_cols=22 Identities=9% Similarity=-0.013 Sum_probs=17.2
Q ss_pred HHHHHHhhCCCHHHHHHHHHHh
Q 033806 77 VDIIANELELDKKVAERTLREH 98 (111)
Q Consensus 77 V~LI~~elevsk~kA~~aLre~ 98 (111)
+.-|+.+++||+..--+.|+.+
T Consensus 24 ~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHc
Confidence 5567889999998888777654
No 93
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=21.48 E-value=68 Score=21.52 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=18.9
Q ss_pred hHHHHHHhhCCCHHHHHHHHHHh
Q 033806 76 DVDIIANELELDKKVAERTLREH 98 (111)
Q Consensus 76 DV~LI~~elevsk~kA~~aLre~ 98 (111)
--.-|..+||+||.+.-++|+..
T Consensus 36 tQ~eIA~~lGiSR~~VsrlL~~A 58 (101)
T 2w7n_A 36 PQATFATSLGLTRGAVSQAVHRV 58 (101)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHH
Confidence 34567899999999999999764
No 94
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=21.15 E-value=57 Score=20.83 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHh--cCc
Q 033806 85 ELDKKVAERTLREH--KGD 101 (111)
Q Consensus 85 evsk~kA~~aLre~--~GD 101 (111)
.+||..|++.|+.. .|+
T Consensus 13 ~isr~~Ae~lL~~~~~~G~ 31 (109)
T 3tkz_A 13 NITGVEAENLLLTRGVDGS 31 (109)
T ss_dssp TCCHHHHHHHHHHHCCTTE
T ss_pred CCCHHHHHHHHhcCCCCCE
Confidence 57999999999985 564
No 95
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.96 E-value=1.4e+02 Score=19.48 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=34.4
Q ss_pred HHHhhcCCChhhHHHHHHhhCCCHHHHHHHHHHhcCcHHH
Q 033806 65 KELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVA 104 (111)
Q Consensus 65 ~el~~v~V~~eDV~LI~~elevsk~kA~~aLre~~GDvv~ 104 (111)
..|-..+++.+.+......++-.-..|.+.|-.|.|++..
T Consensus 34 ~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~ 73 (83)
T 1veg_A 34 NQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPP 73 (83)
T ss_dssp HHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCT
T ss_pred HHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCch
Confidence 3466778999999999999999999999999999997643
No 96
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=20.72 E-value=63 Score=22.80 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.1
Q ss_pred HHHHHHhhCCCHHHHHHHHHH
Q 033806 77 VDIIANELELDKKVAERTLRE 97 (111)
Q Consensus 77 V~LI~~elevsk~kA~~aLre 97 (111)
..-|++++||||.--+++|+.
T Consensus 38 e~~La~~lgVSRtpVREAL~~ 58 (218)
T 3sxy_A 38 VRELSEKLGISFTPVRDALLQ 58 (218)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 356799999999999999875
No 97
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=20.58 E-value=1.1e+02 Score=18.12 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=22.5
Q ss_pred cCCChhhHHHHHHhhCCCHHHHHHHHHHhc
Q 033806 70 VKINAADVDIIANELELDKKVAERTLREHK 99 (111)
Q Consensus 70 v~V~~eDV~LI~~elevsk~kA~~aLre~~ 99 (111)
-.|+.+++.-++..++++.......++..+
T Consensus 42 G~I~~~El~~~l~~~g~~~~~~~~~~~~~D 71 (91)
T 2pmy_A 42 GRLEREEFRALCTELRVRPADAEAVFQRLD 71 (91)
T ss_dssp SSEEHHHHHHHHHHTTCCHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHcCcCHHHHHHHHHHhC
Confidence 357777888888888888887777777654
No 98
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=20.09 E-value=97 Score=22.64 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.0
Q ss_pred hhHHHHHHhhCCCHHHHHHHHHHhc
Q 033806 75 ADVDIIANELELDKKVAERTLREHK 99 (111)
Q Consensus 75 eDV~LI~~elevsk~kA~~aLre~~ 99 (111)
.=|..+|.+.|||.+.|...+++.=
T Consensus 229 n~V~~~m~~~g~s~eeA~~~~~~~i 253 (300)
T 1di1_A 229 SAVKVLAEESKLGIPATKRVLWSMT 253 (300)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4689999999999999988776543
Done!