BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033807
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U8W|A Chain A, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|B Chain B, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|C Chain C, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|D Chain D, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|E Chain E, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|F Chain F, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
Length = 149
Score = 189 bits (479), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 87/111 (78%), Positives = 98/111 (88%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
++V+R FAEKHYEDLSSK FF L++YI SGPVVAMIWEG+ VV TGR IIGATNPA S
Sbjct: 38 ISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASE 97
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
PGTIRGD AI GRN+IHGSDSVESA+KEIALWFPDGP+NWQSS+HPW+YE
Sbjct: 98 PGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGPVNWQSSVHPWVYE 148
>pdb|1PKU|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|G Chain G, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|H Chain H, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|I Chain I, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|J Chain J, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|K Chain K, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|L Chain L, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
Length = 150
Score = 165 bits (418), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 91/111 (81%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
M V+R FA++HY DLS KPFF L+EYI SGPVVAM+WEG+ VV TGR IIGAT P ++A
Sbjct: 39 MNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAA 98
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
PGTIR D A+ GRN+IHGSDSV++ +KEIALWFP+G W+S+LHPWIYE
Sbjct: 99 PGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPEGLAEWRSNLHPWIYE 149
>pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|B Chain B, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|C Chain C, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
Length = 151
Score = 147 bits (370), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
M ++HY DL +PFF L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S
Sbjct: 40 MRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK 99
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 111
PGTIRGD I GRNIIHGSDSVESA+KEIALWF P+ +N++S WIYE
Sbjct: 100 PGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFRPEELVNYKSCAQNWIYE 151
>pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|B Chain B, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|C Chain C, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|D Chain D, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|E Chain E, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|F Chain F, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
Length = 152
Score = 147 bits (370), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
M ++HY DL +PFF L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S
Sbjct: 41 MRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK 100
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 111
PGTIRGD I GRNIIHGSDSVESA+KEIALWF P+ +N++S WIYE
Sbjct: 101 PGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFHPEELVNYKSCAQNWIYE 152
>pdb|1NSK|R Chain R, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|L Chain L, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|T Chain T, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|U Chain U, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|N Chain N, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|O Chain O, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
Length = 152
Score = 143 bits (360), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 82/104 (78%), Gaps = 1/104 (0%)
Query: 9 EKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDL 68
++HY DL +PFF L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S PGTIRGD
Sbjct: 49 KQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDF 108
Query: 69 AIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 111
I GRNIIHGSDSV+SA+KEI+LWF P+ ++++S H W+YE
Sbjct: 109 CIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152
>pdb|1NUE|A Chain A, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|B Chain B, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|C Chain C, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|D Chain D, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|E Chain E, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|F Chain F, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|3BBB|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBF|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
Length = 151
Score = 143 bits (360), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 82/104 (78%), Gaps = 1/104 (0%)
Query: 9 EKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDL 68
++HY DL +PFF L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S PGTIRGD
Sbjct: 48 KQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDF 107
Query: 69 AIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 111
I GRNIIHGSDSV+SA+KEI+LWF P+ ++++S H W+YE
Sbjct: 108 CIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 151
>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|B Chain B, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|C Chain C, The Awd Nucleotide Diphosphate Kinase From Drosophila
Length = 153
Score = 143 bits (360), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/108 (62%), Positives = 80/108 (74%), Gaps = 1/108 (0%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ EKHY DLS++PFF L+ Y+ SGPVV M+WEG VVKTGR ++GATNPA S PGTI
Sbjct: 46 KELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTI 105
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 111
RGD I GRNIIHGSD+VESA+KEIALWF + + W + WIYE
Sbjct: 106 RGDFCIQVGRNIIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 153
>pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|B Chain B, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|C Chain C, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|D Chain D, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|E Chain E, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|F Chain F, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|2HVD|A Chain A, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|B Chain B, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|C Chain C, Human Nucleoside Diphosphate Kinase A Complexed With Adp
Length = 152
Score = 142 bits (359), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
M ++HY DL +PFF L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S
Sbjct: 41 MQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK 100
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 111
PGTIRGD I GRNIIHGSDSVESA+KEI LWF P+ +++ S WIYE
Sbjct: 101 PGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>pdb|3L7U|A Chain A, Crystal Structure Of Human Nm23-H1
pdb|3L7U|B Chain B, Crystal Structure Of Human Nm23-H1
pdb|3L7U|C Chain C, Crystal Structure Of Human Nm23-H1
Length = 172
Score = 142 bits (358), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
M ++HY DL +PFF L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S
Sbjct: 61 MQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK 120
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 111
PGTIRGD I GRNIIHGSDSVESA+KEI LWF P+ +++ S WIYE
Sbjct: 121 PGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 172
>pdb|2HVE|A Chain A, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|B Chain B, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|C Chain C, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
Length = 152
Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
M ++HY DL +PFF L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S
Sbjct: 41 MQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK 100
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 111
PGTIRGD I GRNIIHG DSVESA+KEI LWF P+ +++ S WIYE
Sbjct: 101 PGTIRGDFCIQVGRNIIHGGDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>pdb|1S57|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S59|A Chain A, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|B Chain B, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|C Chain C, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|D Chain D, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|E Chain E, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|F Chain F, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
Length = 153
Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 83/108 (76%), Gaps = 1/108 (0%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ AE+HY+DLS+K FF +LIEYITSGPVV M WEG GVV + R +IG T+P Q+ PGTI
Sbjct: 46 KELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTI 105
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 111
RGDLA+ TGRNI+HGSDS E+ ++EI LWF +G + W S+L W+ E
Sbjct: 106 RGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 153
>pdb|3BBC|A Chain A, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|B Chain B, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|C Chain C, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|D Chain D, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|E Chain E, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|F Chain F, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
Length = 151
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Query: 9 EKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDL 68
++HY DL +PFF L++Y+ SGPVVAM+WEG VVKTG ++G TNPA S PGTIRGD
Sbjct: 48 KQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGAVMLGETNPADSKPGTIRGDF 107
Query: 69 AIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 111
I GRNIIHGSDSV+SA+KEI+LWF P+ ++++S H W+YE
Sbjct: 108 CIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 151
>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|B Chain B, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|C Chain C, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|D Chain D, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|E Chain E, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|F Chain F, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization
Length = 182
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 84/107 (78%), Gaps = 1/107 (0%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ FA++HY DL +PFF L ++++SGPV+AM+WEGEGV+ GR +IGAT+P +SAPGTI
Sbjct: 73 KQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTI 132
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIY 110
RGDLA+V GRNIIHGSD E+A+ EI LWF P+ +++ S+ WIY
Sbjct: 133 RGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVSFTSNSEKWIY 179
>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|B Chain B, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|C Chain C, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 153
Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 79/108 (73%), Gaps = 1/108 (0%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ EKHY DLS++PFF L+ Y+ SGPVV M+WEG VVKTGR ++GATNPA S PGTI
Sbjct: 46 KELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTI 105
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 111
RGD I GRNII GSD+VESA+KEIALWF + + W + WIYE
Sbjct: 106 RGDFCIQVGRNIIXGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 153
>pdb|3PRV|A Chain A, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|B Chain B, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|C Chain C, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|D Chain D, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|E Chain E, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|F Chain F, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
Length = 157
Score = 139 bits (349), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 81/105 (77%), Gaps = 1/105 (0%)
Query: 8 AEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGD 67
A++HY DL+SKPF+ L+ Y +SGP+V M+WEG+GVVK GR ++GATNPA S PGTIRGD
Sbjct: 53 AQQHYIDLASKPFYKDLVAYFSSGPIVGMVWEGKGVVKGGRVLLGATNPADSLPGTIRGD 112
Query: 68 LAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 111
A+ GRN+ HGSDSV+SA++EIA WF P+ +NW S +YE
Sbjct: 113 FAVDVGRNVCHGSDSVDSAKREIAFWFKPEELVNWTSHSVKQVYE 157
>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate
Kinase B With Unordered Nucleotide-Binding Loop.
pdb|3NGS|A Chain A, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|B Chain B, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|C Chain C, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGT|A Chain A, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|B Chain B, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|C Chain C, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|D Chain D, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|E Chain E, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|F Chain F, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|G Chain G, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|H Chain H, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|I Chain I, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|J Chain J, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|K Chain K, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|L Chain L, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|M Chain M, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|N Chain N, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGU|A Chain A, Structure Of Leishmania Ndkb Complexed With Adp.
pdb|3NGU|B Chain B, Structure Of Leishmania Ndkb Complexed With Adp
Length = 151
Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Query: 8 AEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGD 67
A+ HY+DL SKPFF +L++Y +SGP+V M+WEG+ VVK+GR ++GATNPA S PGTIRGD
Sbjct: 47 AQGHYKDLCSKPFFPALVKYFSSGPIVCMVWEGKNVVKSGRVLLGATNPADSQPGTIRGD 106
Query: 68 LAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 111
A+ GRN+ HGSDSVESA++EIA WF I +W S IYE
Sbjct: 107 FAVDVGRNVCHGSDSVESAEREIAFWFKADEIASWTSHSVSQIYE 151
>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|B Chain B, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|D Chain D, Structure Of Human Nucleoside-diphosphate Kinase 3
Length = 169
Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 9 EKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDL 68
+HY +L +PF+G L++Y+ SGPVVAM+W+G VV+T R +IGATNPA + PGTIRGD
Sbjct: 66 REHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDF 125
Query: 69 AIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 111
I G+N+IHGSDSVESA++EIALWF D + W+ S W+YE
Sbjct: 126 CIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169
>pdb|1UCN|A Chain A, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|B Chain B, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|C Chain C, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
Length = 152
Score = 135 bits (340), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
M ++HY DL +P+F L++Y+ SGPVVAM+WEG VVKTGR ++G TNPA S
Sbjct: 41 MQASEDLLKEHYVDLKDRPWFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK 100
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 111
PGTIRGD I GRNII GSDSVESA+KEI LWF P+ +++ S WIYE
Sbjct: 101 PGTIRGDFCIQVGRNIIGGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>pdb|4FKX|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKY|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
Length = 161
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
Query: 8 AEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGD 67
A++HY DL+SKPF+ L+ Y +SGP+V M+WEG GVVK GR ++GATNPA S PGTIRGD
Sbjct: 55 AKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGD 114
Query: 68 LAIVTGRNIIHGSDSVESAQKEIALWFP-DGPINWQSSLHPWIYE 111
A+ GRN+ HGSDSVESA++EIA WF + ++W S IYE
Sbjct: 115 FAVDVGRNVCHGSDSVESAKREIAFWFKAEELVSWTSHSVKQIYE 159
>pdb|4F36|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F4A|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
Length = 157
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
Query: 8 AEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGD 67
A++HY DL+SKPF+ L+ Y +SGP+V M+WEG GVVK GR ++GATNPA S PGTIRGD
Sbjct: 51 AKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGD 110
Query: 68 LAIVTGRNIIHGSDSVESAQKEIALWFP-DGPINWQSSLHPWIYE 111
A+ GRN+ HGSDSVESA++EIA WF + ++W S IYE
Sbjct: 111 FAVDVGRNVCHGSDSVESAKREIAFWFKAEELVSWTSHSVKQIYE 155
>pdb|1NDP|A Chain A, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1NDP|B Chain B, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1KDN|A Chain A, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|B Chain B, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|C Chain C, Structure Of Nucleoside Diphosphate Kinase
pdb|2BEF|A Chain A, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|B Chain B, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|C Chain C, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|1BUX|A Chain A, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|B Chain B, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|C Chain C, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|A Chain A, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|B Chain B, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|C Chain C, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|D Chain D, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|E Chain E, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|F Chain F, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1F6T|A Chain A, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|B Chain B, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|C Chain C, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1HIY|A Chain A, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|B Chain B, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|C Chain C, Binding Of Nucleotides To Ndp Kinase
pdb|1S5Z|A Chain A, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|B Chain B, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|C Chain C, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|D Chain D, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|E Chain E, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|F Chain F, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1NDC|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase Complexed
With Dtdp And Mg2+ At 2 A Resolution
Length = 155
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 77/107 (71%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ AE HY + +PFFG L+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+I
Sbjct: 49 KDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSI 108
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
RGD + GRNIIHGSDSVESA +EIALWF + + +P +YE
Sbjct: 109 RGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nucleoside
Diphosphate Kinase
Length = 155
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 77/107 (71%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ AE HY + +PFFG L+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+I
Sbjct: 49 KDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSI 108
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
RGD + GRNIIHGSDSVESA +EIALWF + + +P +YE
Sbjct: 109 RGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1NPK|A Chain A, Refined X-Ray Structure Of Dictyostelium Nucleoside
Diphosphate Kinase At 1,8 Angstroms Resolution
Length = 154
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 77/107 (71%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ AE HY + +PFFG L+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+I
Sbjct: 48 KDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSI 107
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
RGD + GRNIIHGSDSVESA +EIALWF + + +P +YE
Sbjct: 108 RGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE 154
>pdb|3B54|A Chain A, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
pdb|3B54|B Chain B, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
Length = 161
Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
+ D E+HY + KPFF ++ ++ SGP++A +WEG+ VV+ GRTI+GATNP SA
Sbjct: 50 VKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSA 109
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 111
PGTIRGD I GRN+ HGSDSV+SA++EI LWF + ++W+S+ WIYE
Sbjct: 110 PGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEELVDWESNQAKWIYE 161
>pdb|1LWX|A Chain A, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|B Chain B, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|C Chain C, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
Length = 155
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 76/107 (71%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ AE HY + +PFFG L+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+I
Sbjct: 49 KDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSI 108
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
RGD + GR IIHGSDSVESA +EIALWF + + +P +YE
Sbjct: 109 RGDFGVDVGRAIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1LEO|A Chain A, P100s Nucleoside Diphosphate Kinase
Length = 150
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 76/107 (71%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ AE HY + +PFFG L+ +ITSGPVVAM++EG+GVV + R +IG TN SAPG+I
Sbjct: 44 KDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNSLASAPGSI 103
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
RGD + GRNIIHGSDSVESA +EIALWF + + +P +YE
Sbjct: 104 RGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE 150
>pdb|1NDK|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase
Length = 155
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 76/107 (71%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ AE HY + +PFFG L+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+I
Sbjct: 49 KDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSI 108
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
RGD + GRNII GSDSVESA +EIALWF + + +P +YE
Sbjct: 109 RGDFGVDVGRNIICGSDSVESANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nucleoside
Diphosphate Kinase
Length = 155
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 76/107 (71%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ AE HY + +PFFG L+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+I
Sbjct: 49 KDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSI 108
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
RGD + GRNII GSDSVESA +EIALWF + + +P +YE
Sbjct: 109 RGDFGVDVGRNIIAGSDSVESANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1NSP|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 155
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 76/107 (71%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ AE HY + +PFFG L+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+I
Sbjct: 49 KDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSI 108
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
RGD + GRNII GSDSVESA +EIALWF + + +P +YE
Sbjct: 109 RGDFGVDVGRNIIXGSDSVESANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1NCL|A Chain A, Thermal Stability Of Hexameric And Tetrameric Nucleoside,
Diphosphate Kinases
Length = 150
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 76/107 (71%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ AE HY + +PFFG L+ +ITSGPVVAM++EG+GVV + R +IG TNP SA G+I
Sbjct: 44 KDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAGGSI 103
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
RGD + GRNIIHGSDSVESA +EIALWF + + +P +YE
Sbjct: 104 RGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPNPNLYE 150
>pdb|1B4S|A Chain A, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|B Chain B, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|C Chain C, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1F3F|A Chain A, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|B Chain B, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|C Chain C, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1MN9|A Chain A, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|B Chain B, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|C Chain C, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|3FKB|A Chain A, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|B Chain B, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|C Chain C, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|D Chain D, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|E Chain E, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|F Chain F, Structure Of Ndpk H122g And Tenofovir-Diphosphate
Length = 155
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 76/107 (71%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ AE HY + +PFFG L+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+I
Sbjct: 49 KDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSI 108
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
RGD + GRNII GSDSVESA +EIALWF + + +P +YE
Sbjct: 109 RGDFGVDVGRNIIGGSDSVESANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|2VU5|A Chain A, Crystal Structure Of Pndk From Bacillus Anthracis
Length = 148
Score = 125 bits (315), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 79/111 (71%), Gaps = 1/111 (0%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
M V A +HY + KPFFG L+++ITSGPV AM+W+GEGVV T R ++G T P ++A
Sbjct: 38 MQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAA 97
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIY 110
PGTIRGD + +NIIHGSDS+ESA++EI ++F + +++ ++ WIY
Sbjct: 98 PGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148
>pdb|3R9L|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Giardia Lamblia Featuring A Disordered Dinucleotide
Binding Site
Length = 155
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ E+HY++ +++PFF L ++++SGPV AM+WEG VV RT++G T PA+SAPGTI
Sbjct: 48 KNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESAPGTI 107
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 111
RGD I GRNIIHGS +++ A +EIALWF P+ +W SL IYE
Sbjct: 108 RGDFGIDVGRNIIHGSANLDDAAREIALWFKPEEVASWSCSLESHIYE 155
>pdb|3Q83|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q86|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q86|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q89|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q8U|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8V|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8Y|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
Length = 157
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
M V AE HY + KPF+ LI +ITS PV AM+ EGE V R IIG+TNP++++
Sbjct: 38 MQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEAS 97
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 111
PG+IRGDL + GRNIIHGSDS+ESA++EI LWF + I ++ S W+YE
Sbjct: 98 PGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149
>pdb|1PAE|X Chain X, Nucleoside Diphosphate Kinase
Length = 155
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 74/107 (69%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ AE HY + +PFFG L+ +ITSGPVVA ++EG+GVV + R IG TNP SAPG+I
Sbjct: 49 KDLAESHYAEHKERPFFGGLVSFITSGPVVAXVFEGKGVVASARLXIGVTNPLASAPGSI 108
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
RGD + GRNII GSDSVESA +EIALWF + + +P +YE
Sbjct: 109 RGDFGVDVGRNIIXGSDSVESANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1MN7|A Chain A, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
pdb|1MN7|B Chain B, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
Length = 155
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 76/107 (71%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
+ AE HY + +P+FG L+ +ITSGPVVAM++EG+GVV + R +IG TNP SAPG+I
Sbjct: 49 KDLAESHYAEHKERPWFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSI 108
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
RGD + GR+II GSDSVESA +EIALWF + + +P +YE
Sbjct: 109 RGDFGVDVGRSIIGGSDSVESANREIALWFKPEELLTEVKPNPNLYE 155
>pdb|1XIQ|A Chain A, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|B Chain B, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|C Chain C, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|D Chain D, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|E Chain E, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|F Chain F, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
Length = 157
Score = 118 bits (296), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Query: 9 EKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDL 68
++HY++LS +PFF +L+ YI+ GPVVAM+WEG +VK GR +IG TNP S GTIRGD
Sbjct: 54 KEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDF 113
Query: 69 AIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWI 109
+ +N+IHGSDSV SA KEI +WF + W+ + WI
Sbjct: 114 CLEVSKNVIHGSDSVASANKEINIWFKAEELTQWKHHMKEWI 155
>pdb|2ZUA|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
Length = 174
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 77/114 (67%), Gaps = 3/114 (2%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
M +D+ AE+HY + KPFF L+++ITSGPV AM+WEG+ + RT++G T+PA+SA
Sbjct: 61 MQIDQELAEEHYGEHEDKPFFDGLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESA 120
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESA--QKEIALWF-PDGPINWQSSLHPWIYE 111
PGTIRGD + GRN+IHGSD + ++EI L+F D ++W W+YE
Sbjct: 121 PGTIRGDYGLDLGRNVIHGSDHEDEGANEREIELFFDEDELVDWDQIDSSWLYE 174
>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4
pdb|1EHW|B Chain B, Human Nucleoside Diphosphate Kinase 4
Length = 162
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 67/85 (78%)
Query: 10 KHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA 69
+HY+DL KPF+ +LI Y++SGPVVAM+WEG VV+ R +IG T+ A++APGTIRGD +
Sbjct: 70 EHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFS 129
Query: 70 IVTGRNIIHGSDSVESAQKEIALWF 94
+ RN+IH SDSVE AQ+EI LWF
Sbjct: 130 VHISRNVIHASDSVEGAQREIQLWF 154
>pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|B Chain B, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|C Chain C, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|D Chain D, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|E Chain E, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|F Chain F, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
Length = 136
Score = 115 bits (287), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Query: 2 TVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQ-SA 60
TV A +HY + KPFFGSL+E+ITSGPVVA I EG + R + G T+P Q +A
Sbjct: 40 TVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAA 99
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 95
PGTIRGD A+ T N++HGSDS ESAQ+EIALWFP
Sbjct: 100 PGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134
>pdb|3JS9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
Length = 156
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Query: 10 KHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA 69
+HY + KPFF L ++I+ GPV MIWEG +K GR ++G T+P +SA GTIRGD
Sbjct: 55 QHYCEHKDKPFFKDLCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGDFG 114
Query: 70 IVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIY 110
+V NI+H S S E A +E ALWF P+ + W+ S+ WIY
Sbjct: 115 VVKNFNIVHASSSAEDAARECALWFTPEQLVTWERSVGGWIY 156
>pdb|1WKJ|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKJ|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKK|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKK|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKL|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
pdb|1WKL|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
Length = 137
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 66/94 (70%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
M + + AE+HY + KPFF L+ +ITSGPVVAM+ EG GVV R ++GAT+P +
Sbjct: 38 MQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDAL 97
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 94
PGTIRGD A N+IHGS ++E AQ+EIAL+F
Sbjct: 98 PGTIRGDFATTIDENVIHGSATLEDAQREIALFF 131
>pdb|2AZ3|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|G Chain G, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|H Chain H, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|I Chain I, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
Length = 164
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
M +D A +HY + KPFF L+ +ITSGPV AM+WEG + R ++GAT+ +A
Sbjct: 45 MRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAA 104
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESA--QKEIALWFPDGP-INWQSSLHPWIYE 111
PGTIRGD G N+IHGSD + ++EIAL+F D ++W W+YE
Sbjct: 105 PGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDELVDWDRDASAWVYE 158
>pdb|3MPD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
pdb|3MPD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
Length = 151
Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 70/108 (64%), Gaps = 4/108 (3%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
R E HY LSS PFF ++E + SG V+AM+W G+ V GR +IG TNP ++ GTI
Sbjct: 46 REVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTI 105
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDG--PINWQSSLHPWIY 110
RGD + TG+NIIHGSD VE+A+KEI LW D P+++ WIY
Sbjct: 106 RGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDVQPVSFFDK--EWIY 151
>pdb|2AZ1|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
Length = 181
Score = 108 bits (270), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
M +D A +HY + KPFF L+ +ITSGPV AM+WEG + R ++GAT+ +A
Sbjct: 62 MRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAA 121
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESA--QKEIALWFPDGP-INWQSSLHPWIYE 111
PGTIRGD G N+IHGSD + ++EIAL+F D ++W W+YE
Sbjct: 122 PGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDELVDWDRDASAWVYE 175
>pdb|2CWK|A Chain A, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2CWK|B Chain B, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2DXD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXE|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXE|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXF|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DXF|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DY9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DY9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DYA|A Chain A, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
pdb|2DYA|B Chain B, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
Length = 160
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 3 VDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPG 62
+DR AEKHYE+ KPFF +LI+YIT PVV M+ EG V+ R + GAT+P +APG
Sbjct: 46 IDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPG 105
Query: 63 TIRGDLAIVTGR---NIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
TIRGD + N+IH SDS ESA++EI+L+F + W Y+
Sbjct: 106 TIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEYPRAADWFYK 157
>pdb|2NCK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|2NCK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
Length = 144
Score = 98.2 bits (243), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 6/104 (5%)
Query: 8 AEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGD 67
AE Y ++PFF L++++ SGPVV M+ EGE V R I+GATNPAQ+A GTIR D
Sbjct: 46 AEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKD 105
Query: 68 LAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 111
A +N +HGSDS+E+A+ EIA +F ++ +H + Y+
Sbjct: 106 FATSIDKNTVHGSDSLENAKIEIAYFF------RETEIHSYPYQ 143
>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3DDI|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3ENA|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ENA|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ETM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3ETM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3EVM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3EVM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3FCV|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3FCV|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3DKD|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
pdb|3DKD|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
Length = 146
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 63/92 (68%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
R E+HY++ S + +F L +++ SGP++++++EG + R + G TNP SAPGTI
Sbjct: 48 RNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTI 107
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 96
RGDLA G N+IH SDS +SA EI++WFP+
Sbjct: 108 RGDLANDIGENLIHASDSEDSAVDEISIWFPE 139
>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3EM1|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3G2X|A Chain A, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|B Chain B, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|C Chain C, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|D Chain D, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|E Chain E, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|F Chain F, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3FC9|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|C Chain C, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|D Chain D, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|E Chain E, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|F Chain F, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
Length = 146
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 62/92 (67%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
R E+HY++ S + +F L +++ SGP++++++EG + R + G TNP SAPGTI
Sbjct: 48 RNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTI 107
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 96
RGDLA N+IH SDS +SA EI++WFP+
Sbjct: 108 RGDLANDIRENLIHASDSEDSAVDEISIWFPE 139
>pdb|3EMT|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
pdb|3EMT|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
Length = 146
Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 62/92 (67%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
R E+HY++ S + +F +++ SGP++++++EG + R + G TNP SAPGTI
Sbjct: 48 RNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTI 107
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 96
RGDLA G N+IH SDS +SA EI++WFP+
Sbjct: 108 RGDLANDIGENLIHASDSEDSAVDEISIWFPE 139
>pdb|1NB2|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Bacillus Halodenitrificans
Length = 150
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 62/97 (63%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
M + + A HY +L PFFG L+ TSGPV AM+WEG T R I+GATNP+ +A
Sbjct: 39 MVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAA 98
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDG 97
PGTIRGD + GRN IHGSDS SA KEI +F G
Sbjct: 99 PGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFFGGG 135
>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|B Chain B, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|C Chain C, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|D Chain D, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|E Chain E, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|F Chain F, Escherichia Coli Nucleoside Diphosphate Kinase
Length = 142
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
+TV++ A Y + KPFF L+E++TSGP+V + EGE V+ R ++GATNPA +
Sbjct: 41 LTVEQ--ARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANAL 98
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 99
GT+R D A N HGSDSVESA +EIA +F +G +
Sbjct: 99 AGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEV 137
>pdb|3VGU|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|I Chain I, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|J Chain J, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|K Chain K, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|L Chain L, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|M Chain M, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|N Chain N, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|O Chain O, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|P Chain P, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 58/92 (63%)
Query: 8 AEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGD 67
AE Y + +PFFG L+ ++TSGPVV + EGE + R ++GATNP ++ GTIR D
Sbjct: 47 AEGFYAEHKERPFFGDLVGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRAD 106
Query: 68 LAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 99
A N +HGSDS ESA +EIA +F + I
Sbjct: 107 YAQSIDANAVHGSDSPESAAREIAYFFAESEI 138
>pdb|3VGS|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGS|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|C Chain C, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|D Chain D, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|E Chain E, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 61/99 (61%)
Query: 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSA 60
+ + + AE Y + +PFFG L+ ++TSGPVV + EGE + R ++GATNP ++
Sbjct: 40 LQLSQEQAEGFYAEHKERPFFGDLVGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAE 99
Query: 61 PGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 99
GTIR D A N +HGSDS ESA +EIA +F + I
Sbjct: 100 AGTIRADYAQSIDANAVHGSDSPESAAREIAYFFEESEI 138
>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EJM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EVO|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
pdb|3EVO|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
Length = 146
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 61/92 (66%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
R E+HY++ S + +F +++ SGP++++++EG + R + G TNP SAPGTI
Sbjct: 48 RNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTI 107
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 96
RGDLA N+IH SDS +SA EI++WFP+
Sbjct: 108 RGDLANDIRENLIHASDSEDSAVDEISIWFPE 139
>pdb|3PJ9|A Chain A, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|B Chain B, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|C Chain C, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|D Chain D, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
Length = 140
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 56/92 (60%)
Query: 8 AEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGD 67
AE Y +PFF L+E++ SGPVV I EGEG V R ++GATNP ++ GTIR D
Sbjct: 48 AENFYAVHKERPFFKDLVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIRAD 107
Query: 68 LAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 99
A N +HGSDS+E+A+ EI +F I
Sbjct: 108 FAESIDANAVHGSDSLENAKIEIEFFFKPNEI 139
>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4DUT|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4EK2|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4EK2|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4HR2|A Chain A, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
pdb|4HR2|B Chain B, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
Length = 145
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 60/94 (63%)
Query: 3 VDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPG 62
+ R AEK Y + +PFF L+E++ SGPV+ + EGE + R ++GAT+P ++ G
Sbjct: 46 LSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEKG 105
Query: 63 TIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 96
TIR D A N +HGSD+ E+A+ EIA +FP+
Sbjct: 106 TIRADFADSIDANAVHGSDAPETARVEIAFFFPE 139
>pdb|3FBE|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBB|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBC|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
Length = 142
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
R E+HY++ S + +F L +++ SGP++++++EG + R + G PGTI
Sbjct: 48 RNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTI 103
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 96
RGDLA G N+IH SDS +SA EI++WFP+
Sbjct: 104 RGDLANDIGENLIHASDSEDSAVDEISIWFPE 135
>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FCW|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3GPA|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
Length = 142
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
R E+HY++ S + +F L +++ SGP++++++EG + R + G PGTI
Sbjct: 48 RNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTI 103
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 99
RGDLA N+IH SDS +SA EI++WFP+ +
Sbjct: 104 RGDLANDIRENLIHASDSEDSAVDEISIWFPETKM 138
>pdb|3EVW|A Chain A, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|B Chain B, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|C Chain C, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|D Chain D, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|E Chain E, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|F Chain F, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
Length = 142
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 4/92 (4%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
R E+HY++ S + +F +++ SGP++++++EG + R + G PGTI
Sbjct: 48 RNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTI 103
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPD 96
RGDLA G N+IH SDS +SA EI++WFP+
Sbjct: 104 RGDLANDIGENLIHASDSEDSAVDEISIWFPE 135
>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|B Chain B, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|C Chain C, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|D Chain D, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|E Chain E, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|F Chain F, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|G Chain G, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|H Chain H, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTO|A Chain A, Orthorhombic Crystal Form C222 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|A Chain A, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|C Chain C, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTR|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTS|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
Length = 142
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 18 KPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRGDLAIVTGR 74
+PFF L+E+++SGPVVA + EGE +K R IIG T+ ++ AP +IR G+
Sbjct: 57 RPFFQELVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGK 116
Query: 75 NIIHGSDSVESAQKEIALWF 94
N IH SDS ESAQ EI F
Sbjct: 117 NAIHASDSPESAQYEICFIF 136
>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|2B8P|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|3B6B|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
Length = 157
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
R E+HY++ S + +F +++ SGP++++++EG + R + G PGTI
Sbjct: 63 RNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTI 118
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 99
RGDLA N+IH SDS +SA EI++WFP+ +
Sbjct: 119 RGDLANDIRENLIHASDSEDSAVDEISIWFPETKM 153
>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|3EE3|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EIC|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3ELH|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3GP9|A Chain A, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|B Chain B, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|C Chain C, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|D Chain D, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|E Chain E, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|F Chain F, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
Length = 142
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 5 RPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTI 64
R E+HY++ S + +F +++ SGP++++++EG + R + G PGTI
Sbjct: 48 RNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTI 103
Query: 65 RGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 99
RGDLA N+IH SDS +SA EI++WFP+ +
Sbjct: 104 RGDLANDIRENLIHASDSEDSAVDEISIWFPETKM 138
>pdb|4DI6|A Chain A, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|B Chain B, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|C Chain C, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|D Chain D, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|E Chain E, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|F Chain F, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DZ6|A Chain A, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|B Chain B, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|C Chain C, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|D Chain D, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|E Chain E, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|F Chain F, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
Length = 190
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 15/114 (13%)
Query: 1 MTVDRPFAEKHY--EDL---SSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATN 55
+ VD A+KHY +D+ S+ + SLI++I++ PV + EG ++ R + GAT
Sbjct: 63 LIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATE 122
Query: 56 PAQSAPGTIRGDLAIVTGR----------NIIHGSDSVESAQKEIALWFPDGPI 99
P + PGTIRGD + + + N+IH S + A +EI +WF D I
Sbjct: 123 PKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMREIPIWFKDNEI 176
>pdb|1XQI|A Chain A, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|B Chain B, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|C Chain C, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
Length = 195
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 10/82 (12%)
Query: 23 SLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRG-------DLAIVTGR- 74
+L++Y TSGP V + +G V+ R ++G T+P + PGTIRG DLA GR
Sbjct: 107 NLVKYXTSGPNVVXVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRV 166
Query: 75 --NIIHGSDSVESAQKEIALWF 94
N++H SDS A++EI WF
Sbjct: 167 VFNLVHASDSPSEAEREIRFWF 188
>pdb|2Y6P|A Chain A, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|B Chain B, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|C Chain C, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
Length = 234
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 38 WEGEGVVKTGRTIIGATNPAQSAPGTIRGDLA--IVTGRNIIHGSDSVESAQKEIALWFP 95
W EG+VKTG +I AT+ + + DL +T ++ GSD V +++ +
Sbjct: 32 WVVEGLVKTGERVILATDSERVK--EVVEDLCEVFLTPSDLPSGSDRVLYVVRDLDV--- 86
Query: 96 DGPINWQSSLHPWIYE 111
D IN+Q P++YE
Sbjct: 87 DLIINYQGD-EPFVYE 101
>pdb|4IQ1|A Chain A, Crystal Structure Of Glutathione S-transferase Mha_0454
(target Efi- 507015) From Mannheimia Haemolytica,
Substrate-free
pdb|4IQ1|B Chain B, Crystal Structure Of Glutathione S-transferase Mha_0454
(target Efi- 507015) From Mannheimia Haemolytica,
Substrate-free
pdb|4IQ1|C Chain C, Crystal Structure Of Glutathione S-transferase Mha_0454
(target Efi- 507015) From Mannheimia Haemolytica,
Substrate-free
pdb|4IW9|A Chain A, Crystal Structure Of Glutathione S-transferase Mha_0454
(target Efi- 507015) From Mannheimia Haemolytica, Gsh
Complex
pdb|4IW9|B Chain B, Crystal Structure Of Glutathione S-transferase Mha_0454
(target Efi- 507015) From Mannheimia Haemolytica, Gsh
Complex
pdb|4IW9|C Chain C, Crystal Structure Of Glutathione S-transferase Mha_0454
(target Efi- 507015) From Mannheimia Haemolytica, Gsh
Complex
Length = 231
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 53 ATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 83
A NP + P + GDLA+ + I+H D +
Sbjct: 68 ALNPRGNVPLLVDGDLALTQNQAIVHYLDEL 98
>pdb|1ORD|A Chain A, Crystallographic Structure Of A Plp-Dependent Ornithine
Decarboxylase From Lactobacillus 30a To 3.1 Angstroms
Resolution
pdb|1ORD|B Chain B, Crystallographic Structure Of A Plp-Dependent Ornithine
Decarboxylase From Lactobacillus 30a To 3.1 Angstroms
Resolution
Length = 730
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 8 AEKHYEDLSSKPFFGSLIEYITSG 31
A +YED PFF SL EY++ G
Sbjct: 98 AVNNYEDSILPPFFKSLKEYVSRG 121
>pdb|3K6A|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|D Chain D, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|E Chain E, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|F Chain F, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
Length = 180
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 12 YEDLSSKPFFGSLIEYITS--GPVVAMIWEGEGVVKT 46
YED+S K +L +Y+TS P+ +I + + V++T
Sbjct: 23 YEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIET 59
>pdb|2F7W|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7W|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7W|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7Y|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7Y|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7Y|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
Length = 177
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 12 YEDLSSKPFFGSLIEYITS--GPVVAMIWEGEGVVKT 46
YED+S K +L +Y+TS P+ +I + + V++T
Sbjct: 20 YEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIET 56
>pdb|3R26|A Chain A, Perrhenate Binding To Molybdate Binding Protein
Length = 237
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 33 VVAMIWEGEGVVKTGR--TIIGATNPAQSAPGTIRGDLAIVTGRN-----IIHGSDSVES 85
V A I+ E + K G T+ PA+ +RG LA+V RN I++GSD+V S
Sbjct: 127 VPAGIYAKEALQKLGAWDTLSPKLAPAED----VRGALALVE-RNEAPLGIVYGSDAVAS 181
Query: 86 AQKEIALWFPD 96
++ FP+
Sbjct: 182 KGVKVVATFPE 192
>pdb|1AMF|A Chain A, Crystal Structure Of Moda, A Molybdate Transport Protein,
Complexed With Molybdate
pdb|1WOD|A Chain A, Crystal Structure Of Moda, A Molybdate Protein, Complexed
With Tungstate
Length = 233
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 33 VVAMIWEGEGVVKTGR--TIIGATNPAQSAPGTIRGDLAIVTGRN-----IIHGSDSVES 85
V A I+ E + K G T+ PA+ +RG LA+V RN I++GSD+V S
Sbjct: 123 VPAGIYAKEALQKLGAWDTLSPKLAPAED----VRGALALVE-RNEAPLGIVYGSDAVAS 177
Query: 86 AQKEIALWFPD 96
++ FP+
Sbjct: 178 KGVKVVATFPE 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,721,669
Number of Sequences: 62578
Number of extensions: 138707
Number of successful extensions: 425
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 84
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)