Query 033807
Match_columns 111
No_of_seqs 130 out of 1042
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00093 nucleoside diphosphat 100.0 1.1E-42 2.5E-47 245.7 11.1 110 1-110 39-149 (149)
2 PLN02619 nucleoside-diphosphat 100.0 2.9E-42 6.4E-47 257.9 10.9 111 1-111 125-236 (238)
3 COG0105 Ndk Nucleoside diphosp 100.0 3.4E-42 7.3E-47 237.0 9.0 96 1-96 39-134 (135)
4 PRK14543 nucleoside diphosphat 100.0 9.6E-42 2.1E-46 245.1 10.7 110 1-110 42-167 (169)
5 PRK14542 nucleoside diphosphat 100.0 1.7E-41 3.7E-46 236.8 10.8 96 1-96 38-133 (137)
6 PRK14541 nucleoside diphosphat 100.0 3.3E-41 7.2E-46 236.1 10.8 99 1-99 38-137 (140)
7 PRK14545 nucleoside diphosphat 100.0 2.3E-40 4.9E-45 231.6 11.3 96 1-96 40-135 (139)
8 cd04415 NDPk7A Nucleoside diph 100.0 3.9E-40 8.5E-45 228.4 9.9 94 1-94 35-131 (131)
9 PRK14540 nucleoside diphosphat 100.0 6.6E-40 1.4E-44 228.0 11.0 96 1-96 39-134 (134)
10 KOG0888 Nucleoside diphosphate 100.0 2.7E-40 5.8E-45 234.3 8.2 111 1-111 42-156 (156)
11 PRK00668 ndk mulitfunctional n 100.0 1.3E-39 2.9E-44 226.1 10.9 97 1-97 38-134 (134)
12 cd04414 NDPk6 Nucleoside dipho 100.0 1.5E-39 3.3E-44 226.3 10.2 95 1-95 38-135 (135)
13 cd04418 NDPk5 Nucleoside dipho 100.0 2.5E-39 5.3E-44 224.5 10.2 95 1-95 35-132 (132)
14 PLN02931 nucleoside diphosphat 100.0 1.2E-38 2.6E-43 230.5 11.3 96 1-96 66-164 (177)
15 cd04413 NDPk_I Nucleoside diph 100.0 2.1E-38 4.5E-43 219.2 10.7 94 1-94 37-130 (130)
16 cd04416 NDPk_TX NDP kinase dom 100.0 3.9E-38 8.4E-43 218.2 9.8 94 1-94 36-132 (132)
17 cd04412 NDPk7B Nucleoside diph 100.0 4.2E-38 9.2E-43 218.7 9.7 94 1-94 37-134 (134)
18 cd00595 NDPk Nucleoside diphos 100.0 2.8E-37 6E-42 214.0 10.4 94 1-94 37-133 (133)
19 PF00334 NDK: Nucleoside dipho 100.0 2.3E-37 5E-42 214.3 8.8 96 1-96 37-132 (135)
20 smart00562 NDK These are enzym 100.0 4.1E-36 9E-41 208.2 10.2 96 1-96 37-132 (135)
21 PRK14544 nucleoside diphosphat 100.0 1E-35 2.2E-40 216.2 10.4 99 1-99 40-182 (183)
22 PF14454 Prok_Ub: Prokaryotic 61.4 1.5 3.3E-05 26.9 -1.1 28 2-34 23-50 (65)
23 TIGR03738 PRTRC_C PRTRC system 47.7 10 0.00022 23.4 1.0 28 2-34 22-49 (66)
24 PF07576 BRAP2: BRCA1-associat 42.8 23 0.00049 23.7 2.2 17 4-20 63-79 (110)
25 COG1325 Predicted exosome subu 38.8 39 0.00084 24.1 2.9 25 74-98 13-37 (149)
26 COG1504 Uncharacterized conser 37.7 68 0.0015 22.0 3.8 52 2-53 48-110 (121)
27 PF14784 ECIST_Cterm: C-termin 34.5 38 0.00082 23.3 2.3 33 26-58 81-116 (126)
28 PRK14015 pepN aminopeptidase N 33.9 1.2E+02 0.0025 27.4 5.7 69 7-82 735-806 (875)
29 TIGR02414 pepN_proteo aminopep 33.0 1.2E+02 0.0026 27.3 5.7 69 7-82 725-796 (863)
30 PF11940 DUF3458: Domain of un 31.6 56 0.0012 26.3 3.2 70 6-82 270-342 (367)
31 KOG1743 Ferric reductase-like 26.2 81 0.0018 22.1 2.8 39 18-56 98-136 (137)
32 TIGR03342 dsrC_tusE_dsvC sulfu 23.1 1.6E+02 0.0035 19.7 3.7 22 8-29 49-70 (108)
33 KOG3219 Transcription initiati 21.1 1.5E+02 0.0032 22.0 3.5 63 3-68 97-175 (195)
34 PRK11508 sulfur transfer prote 20.7 1.9E+02 0.0041 19.4 3.7 22 8-29 50-71 (109)
No 1
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=1.1e-42 Score=245.69 Aligned_cols=110 Identities=57% Similarity=1.073 Sum_probs=106.1
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|++++||++|++||+|||+++|+|+|+|||++||.+|||++|.+|.|+|||++||++.++|+||||
T Consensus 39 ~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~nav~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~NavH~S 118 (149)
T PTZ00093 39 LQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNVVKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGS 118 (149)
T ss_pred ecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHhCCCCccccCCCcchhhhccccccceeecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-CccccccCCCCccc
Q 033807 81 DSVESAQKEIALWFPD-GPINWQSSLHPWIY 110 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~ 110 (111)
||+++|.+||+|||+. ++.+|+.+..+++|
T Consensus 119 ds~e~A~~Ei~~fF~~~~~~~~~~~~~~~~~ 149 (149)
T PTZ00093 119 DSVESAKREIALWFKPEELVSWTSHSSKWIY 149 (149)
T ss_pred CCHHHHHHHHHHhCChhhccCccccchhhhC
Confidence 9999999999999966 88899988888876
No 2
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=2.9e-42 Score=257.86 Aligned_cols=111 Identities=57% Similarity=1.086 Sum_probs=107.7
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|+|++||++||||||.++.|+|||++||++.++|+||||
T Consensus 125 v~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~GenaV~~~R~LiGpTdP~~A~PgTIRg~fG~~~~rNaVHgS 204 (238)
T PLN02619 125 VVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 204 (238)
T ss_pred ccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCCccccCCCcchhhhcccccceeeecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
|++++|++||+|||++ ++++|+.+.++|+|.
T Consensus 205 DS~EsA~rEI~~fF~~~ei~~y~~~~~~~~y~ 236 (238)
T PLN02619 205 DGPETAKDEINLWFKPEELVSYTSNAEKWIYG 236 (238)
T ss_pred CCHHHHHHHHHHhCCHHhccCCcccchhhhcc
Confidence 9999999999999965 899999999999984
No 3
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.4e-42 Score=237.00 Aligned_cols=96 Identities=57% Similarity=1.006 Sum_probs=94.3
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
+++++++|++||.+|+++|||++|++||+||||++|+|+|+|||+.+|.+||+|||.+|+|||||++||.+..+|+||||
T Consensus 39 ~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~ai~~~R~l~GaTnp~~A~pGTIRgdfa~~~~~N~vHgS 118 (135)
T COG0105 39 VQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENAISVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGS 118 (135)
T ss_pred eccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhHHHHHHHHHCCCCcccCCCCeEeeehhcccCcceEEcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 033807 81 DSVESAQKEIALWFPD 96 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~ 96 (111)
||+++|+|||.+||++
T Consensus 119 Ds~esA~rEIa~~F~~ 134 (135)
T COG0105 119 DSPESAEREIALFFSK 134 (135)
T ss_pred CCHHHHhHHhhhccCC
Confidence 9999999999999975
No 4
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=9.6e-42 Score=245.14 Aligned_cols=110 Identities=36% Similarity=0.601 Sum_probs=105.9
Q ss_pred CccCHHHHHHHHH-----HhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccc----
Q 033807 1 MTVDRPFAEKHYE-----DLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIV---- 71 (111)
Q Consensus 1 ~~ls~~~a~~~Y~-----~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~---- 71 (111)
++||+++|++||. +|+++|||++|++||+|||+++|+|+|+|||++||+++|||+|..|.|+|||++||++
T Consensus 42 ~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~valvl~g~naI~~~R~l~Gpt~p~~a~p~tIR~~fg~~~~~~ 121 (169)
T PRK14543 42 LLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVFVVEGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNY 121 (169)
T ss_pred ccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEEEEECCCHHHHHHHHhCCCCccccCCCcchhhhccccccc
Confidence 5799999999995 8999999999999999999999999999999999999999999999999999999997
Q ss_pred ------cCCceEEeCCCHHHHHHHHHhhCCC-CccccccCCCCccc
Q 033807 72 ------TGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIY 110 (111)
Q Consensus 72 ------~~~N~vH~Sds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~ 110 (111)
.++|+||||||+++|++||+||||+ ++.+|++.++.|+|
T Consensus 122 ~~~~~~~~rN~vH~SDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~ 167 (169)
T PRK14543 122 ANEKGFSVYNVIHASANEDDALREIPIWFKDNEILTYKRDDECEHY 167 (169)
T ss_pred ccccccceeeEEECCCCHHHHHHHHHHhCCcccccccccccceeEe
Confidence 7899999999999999999999976 79999999999998
No 5
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.7e-41 Score=236.83 Aligned_cols=96 Identities=38% Similarity=0.597 Sum_probs=94.0
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|++++||++|+++|+|||+++|+|+|+|||++||++|||+||..|.|+|||++||++.++|+||||
T Consensus 38 ~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~nav~~~R~l~Gpt~p~~A~p~siR~~fg~~~~~N~vH~S 117 (137)
T PRK14542 38 LKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGS 117 (137)
T ss_pred ecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHhCCCCchhCCCCCchHHhcCcccceeEECC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 033807 81 DSVESAQKEIALWFPD 96 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~ 96 (111)
||+++|++||++||++
T Consensus 118 ds~e~A~~Ei~~fF~~ 133 (137)
T PRK14542 118 DSDANAALEISFFFKG 133 (137)
T ss_pred CCHHHHHHHHHHcCCh
Confidence 9999999999999965
No 6
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=3.3e-41 Score=236.10 Aligned_cols=99 Identities=41% Similarity=0.675 Sum_probs=95.6
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|||++||++|||+||.+|.|+|||++||++.++|+||||
T Consensus 38 ~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~nav~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vHgS 117 (140)
T PRK14541 38 TRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGS 117 (140)
T ss_pred ecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcHHHHHHHHhCCCCchhCCCCCchHHhcccccceeEECC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-Ccc
Q 033807 81 DSVESAQKEIALWFPD-GPI 99 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~ 99 (111)
||+++|++||+||||+ ++.
T Consensus 118 ds~e~A~~Ei~~fF~~~~~~ 137 (140)
T PRK14541 118 DSAENAAIEAGFFFSAEEVV 137 (140)
T ss_pred CCHHHHHHHHHHcCChhhhc
Confidence 9999999999999965 554
No 7
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.3e-40 Score=231.62 Aligned_cols=96 Identities=46% Similarity=0.675 Sum_probs=94.1
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|+++|+|||+++|+|+|+|||++||+++||+||.+|.|+|||++||++.++|+||||
T Consensus 40 ~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~nav~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vH~S 119 (139)
T PRK14545 40 TQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKENAVEDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGS 119 (139)
T ss_pred ecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCCHHHHHHHHhCCCCcccCCCCChhHHhcccccceeEECC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 033807 81 DSVESAQKEIALWFPD 96 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~ 96 (111)
||+++|.+||+|||++
T Consensus 120 ds~e~A~~Ei~~fF~~ 135 (139)
T PRK14545 120 DSDENAQIEGAFHFAG 135 (139)
T ss_pred CCHHHHHHHHHHhCCc
Confidence 9999999999999975
No 8
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=3.9e-40 Score=228.39 Aligned_cols=94 Identities=38% Similarity=0.672 Sum_probs=92.2
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCC---CCCChhhhcccccCCceE
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNII 77 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a---~p~slR~~fg~~~~~N~v 77 (111)
++||+++|++||.+|+++|||++|+++|+|||+++|+|+|+|||++||++|||+||..| .|+|||++||.+.++|+|
T Consensus 35 ~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~v 114 (131)
T cd04415 35 TKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAISEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAA 114 (131)
T ss_pred ecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCChHHhhccCCCcchhhhcccccceeE
Confidence 57999999999999999999999999999999999999999999999999999999987 899999999999999999
Q ss_pred EeCCCHHHHHHHHHhhC
Q 033807 78 HGSDSVESAQKEIALWF 94 (111)
Q Consensus 78 H~Sds~~~A~~Ei~~fF 94 (111)
|||||+++|++||++||
T Consensus 115 H~Sds~e~a~~Ei~~fF 131 (131)
T cd04415 115 HGSDSVASAARELEFFF 131 (131)
T ss_pred ECCCCHHHHHHHHHhhC
Confidence 99999999999999998
No 9
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=6.6e-40 Score=227.95 Aligned_cols=96 Identities=50% Similarity=0.830 Sum_probs=94.0
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|++++||+.|+++|+|||+++|+|+|+|||++||++|||++|..|.|+|||++||++.++|+||||
T Consensus 39 ~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~nav~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~N~vH~S 118 (134)
T PRK14540 39 LKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENAISTVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHAS 118 (134)
T ss_pred ecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCChHHHHHHHhCCCCcccCCCCcchhhhcccccceeEECC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 033807 81 DSVESAQKEIALWFPD 96 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~ 96 (111)
|++++|.+||+|||++
T Consensus 119 ds~~~a~~E~~~fF~~ 134 (134)
T PRK14540 119 DSKESAEREIKLFFGE 134 (134)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 9999999999999974
No 10
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.7e-40 Score=234.35 Aligned_cols=111 Identities=54% Similarity=1.008 Sum_probs=106.7
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCC---CCCChhhhcccccCCceE
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNII 77 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a---~p~slR~~fg~~~~~N~v 77 (111)
++++++++++||.+|+++|||+.||.||+|||++||+|+|.|||+.||+++|||++..| .|+|||++||++.++|++
T Consensus 42 ~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~ 121 (156)
T KOG0888|consen 42 VQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNVVQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSI 121 (156)
T ss_pred ecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCHHHHHHHHhCCCCcccccccCCCCeeeeecccCCCCcc
Confidence 47899999999999999999999999999999999999999999999999999999987 999999999999999999
Q ss_pred EeCCCHHHHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 78 HGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 78 H~Sds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
|||||.++|+|||.+|||. +++.|....+.|+|+
T Consensus 122 HgSDs~~sA~rEi~~~F~~~e~~~~~~~~~~~~~e 156 (156)
T KOG0888|consen 122 HGSDSVESAEREIKLWFPEFELVVYESQPERWLYE 156 (156)
T ss_pred ccCCcHHHHHHHHHhcCchhhheecccchhhhhcC
Confidence 9999999999999999985 899999988888875
No 11
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=1.3e-39 Score=226.12 Aligned_cols=97 Identities=56% Similarity=0.982 Sum_probs=94.6
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|++++||++|+++|+|||+++|+|+|+|||++||++|||++|..+.|+|||++||++.++|+||||
T Consensus 38 ~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~nav~~~r~l~Gp~~p~~a~p~siR~~~g~~~~~N~vH~s 117 (134)
T PRK00668 38 MQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENAIAKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGS 117 (134)
T ss_pred ecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchHHHHHHHHhCCCCccccCCCcchhhhccccccccEECC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCCC
Q 033807 81 DSVESAQKEIALWFPDG 97 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~~ 97 (111)
|++++|.+||+||||++
T Consensus 118 ds~~~a~~Ei~~fF~~~ 134 (134)
T PRK00668 118 DSPESAAREIALFFSEE 134 (134)
T ss_pred CCHHHHHHHHHHhCCCC
Confidence 99999999999999864
No 12
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=1.5e-39 Score=226.35 Aligned_cols=95 Identities=41% Similarity=0.645 Sum_probs=92.6
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCC---CCCChhhhcccccCCceE
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNII 77 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a---~p~slR~~fg~~~~~N~v 77 (111)
++||+++|++||.+|++++||++|++||+|||+++|+|+|+|||++||++|||+||..| .|+|||++||++.++|+|
T Consensus 38 ~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~naV~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~v 117 (135)
T cd04414 38 LRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENAIKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNAT 117 (135)
T ss_pred ecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCHHHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeE
Confidence 57999999999999999999999999999999999999999999999999999999875 899999999999999999
Q ss_pred EeCCCHHHHHHHHHhhCC
Q 033807 78 HGSDSVESAQKEIALWFP 95 (111)
Q Consensus 78 H~Sds~~~A~~Ei~~fF~ 95 (111)
||||+.++|++||++|||
T Consensus 118 H~Sds~e~A~~Ei~~fF~ 135 (135)
T cd04414 118 HGSDSPASAQREIALFFP 135 (135)
T ss_pred ECCCCHHHHHHHHHhcCC
Confidence 999999999999999997
No 13
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=2.5e-39 Score=224.53 Aligned_cols=95 Identities=32% Similarity=0.573 Sum_probs=93.0
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCC---CCCChhhhcccccCCceE
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNII 77 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a---~p~slR~~fg~~~~~N~v 77 (111)
++||+++|++||.+|++++||++|+++|+|||+++|+|+|+|||++||++|||+||..| .|+|||++||++.++|+|
T Consensus 35 ~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~v 114 (132)
T cd04418 35 LQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAISYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAV 114 (132)
T ss_pred ecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHHHHHHHHHCCCChHHhccCCCCChHHhhcCcccceeE
Confidence 57999999999999999999999999999999999999999999999999999999988 899999999999999999
Q ss_pred EeCCCHHHHHHHHHhhCC
Q 033807 78 HGSDSVESAQKEIALWFP 95 (111)
Q Consensus 78 H~Sds~~~A~~Ei~~fF~ 95 (111)
||||++++|++||++|||
T Consensus 115 H~Sds~~~a~~Ei~~fF~ 132 (132)
T cd04418 115 HGSDSFSSAEREIRFMFP 132 (132)
T ss_pred ECCCCHHHHHHHHHhcCC
Confidence 999999999999999997
No 14
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=1.2e-38 Score=230.54 Aligned_cols=96 Identities=42% Similarity=0.684 Sum_probs=93.6
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCC---CCCChhhhcccccCCceE
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNII 77 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a---~p~slR~~fg~~~~~N~v 77 (111)
++||+++|++||.+|+|++||++|+++|+|||+++|+|+|+|||++||++|||+||.+| .|+|||++||++.++|+|
T Consensus 66 ~~Lt~e~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam~L~g~naV~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~v 145 (177)
T PLN02931 66 TQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCV 145 (177)
T ss_pred ecCCHHHHHHHHHHhCCCccHHHHHHHHHhCCeEEEEEecCCHHHHHHHHhCCCChhhhccCCCCCchHHhcCcccccce
Confidence 57999999999999999999999999999999999999999999999999999999887 799999999999999999
Q ss_pred EeCCCHHHHHHHHHhhCCC
Q 033807 78 HGSDSVESAQKEIALWFPD 96 (111)
Q Consensus 78 H~Sds~~~A~~Ei~~fF~~ 96 (111)
||||++++|++||++|||.
T Consensus 146 HgSDs~e~A~~Ei~~fF~~ 164 (177)
T PLN02931 146 HGSDSPESAEREISFFFGD 164 (177)
T ss_pred ECCCCHHHHHHHHHHhCCc
Confidence 9999999999999999986
No 15
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=2.1e-38 Score=219.17 Aligned_cols=94 Identities=63% Similarity=1.072 Sum_probs=92.6
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++|++++|++||.+|+++|||++|+++|+|||+++|+|+|+|||++||++|||++|..+.|+|||++||++.++|+||||
T Consensus 37 ~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav~~~r~l~Gp~~~~~a~p~slR~~~G~~~~~NavH~s 116 (130)
T cd04413 37 LQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAVKTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGS 116 (130)
T ss_pred ccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHHHHHHHHhCCCCccccCCCCchhhhcccccccceECC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhC
Q 033807 81 DSVESAQKEIALWF 94 (111)
Q Consensus 81 ds~~~A~~Ei~~fF 94 (111)
|++++|.+|++|||
T Consensus 117 d~~~~a~~E~~~fF 130 (130)
T cd04413 117 DSVESAEREIALWF 130 (130)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999999998
No 16
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=3.9e-38 Score=218.21 Aligned_cols=94 Identities=32% Similarity=0.619 Sum_probs=92.0
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCC---CCCChhhhcccccCCceE
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNII 77 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a---~p~slR~~fg~~~~~N~v 77 (111)
++||+++|++||.+|+++|||++|+++|+|||+++|+|+|+|||++||+++||++|..| .|+|||++||++.++|+|
T Consensus 36 ~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~v 115 (132)
T cd04416 36 MVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAVEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAV 115 (132)
T ss_pred ecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHhCCCChHHhhccCCCChHHHhcCcccceeE
Confidence 47999999999999999999999999999999999999999999999999999999887 899999999999999999
Q ss_pred EeCCCHHHHHHHHHhhC
Q 033807 78 HGSDSVESAQKEIALWF 94 (111)
Q Consensus 78 H~Sds~~~A~~Ei~~fF 94 (111)
||||++++|++||++||
T Consensus 116 H~Sds~~~a~~Ei~~fF 132 (132)
T cd04416 116 HGSSSAEEAEKEIDFFF 132 (132)
T ss_pred ECCCCHHHHHHHHHHhC
Confidence 99999999999999998
No 17
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=4.2e-38 Score=218.67 Aligned_cols=94 Identities=29% Similarity=0.450 Sum_probs=91.9
Q ss_pred CccCHHHHHHHHHHhcCC-CchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCC---CCCChhhhcccccCCce
Q 033807 1 MTVDRPFAEKHYEDLSSK-PFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNI 76 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~-~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a---~p~slR~~fg~~~~~N~ 76 (111)
++||+++|++||.+|+++ +||++|+++|+|||+++|+|+|+|||++||+++||++|..| .|+|||++||++.++|+
T Consensus 37 ~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~nav~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~ 116 (134)
T cd04412 37 FNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENAVKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNA 116 (134)
T ss_pred ecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCChHHhcccCCCCeehhhcCcCccee
Confidence 479999999999999999 99999999999999999999999999999999999999887 89999999999999999
Q ss_pred EEeCCCHHHHHHHHHhhC
Q 033807 77 IHGSDSVESAQKEIALWF 94 (111)
Q Consensus 77 vH~Sds~~~A~~Ei~~fF 94 (111)
|||||++++|++|+++||
T Consensus 117 vH~Sds~~~A~~e~~~fF 134 (134)
T cd04412 117 VHCTDLPEDGPLELKFFF 134 (134)
T ss_pred EEcCCCHHHHHHHHHhhC
Confidence 999999999999999998
No 18
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=2.8e-37 Score=213.98 Aligned_cols=94 Identities=45% Similarity=0.775 Sum_probs=91.4
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCC---CCCChhhhcccccCCceE
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNII 77 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a---~p~slR~~fg~~~~~N~v 77 (111)
++||+++|++||.+|+++|||++|+++|+|||+++|+|+|+|||++||+++||+||..| .|+|||++||++.++|+|
T Consensus 37 ~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~v 116 (133)
T cd00595 37 LHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAV 116 (133)
T ss_pred ecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChHHHHHHHhCCCChhHhccCCCCChHHHhcCcccceeE
Confidence 57999999999999999999999999999999999999999999999999999999854 899999999999999999
Q ss_pred EeCCCHHHHHHHHHhhC
Q 033807 78 HGSDSVESAQKEIALWF 94 (111)
Q Consensus 78 H~Sds~~~A~~Ei~~fF 94 (111)
||||++++|.+||+|||
T Consensus 117 H~Sd~~~~a~~Ei~~~F 133 (133)
T cd00595 117 HGSDSVESAAREIAFFF 133 (133)
T ss_pred ECCCCHHHHHHHHHhhC
Confidence 99999999999999998
No 19
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=2.3e-37 Score=214.33 Aligned_cols=96 Identities=42% Similarity=0.789 Sum_probs=89.1
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++|++++|++||..|+++++|+.|+++|+|||+++|+|+|+|||++||+++||+||.+|.|+|||++||++..+|+||||
T Consensus 37 ~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av~~~r~l~Gp~dp~~a~p~slR~~~g~~~~~N~vH~s 116 (135)
T PF00334_consen 37 VQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAVEKWRQLCGPTDPEEAAPGSLRARYGTDIIRNAVHGS 116 (135)
T ss_dssp EEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--SSGGGSSTTSHHHHH-SSSTG-SEEE-
T ss_pred hhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhhHHHHHhcCCcchhhhccccchhceeecCCCCeEECC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 033807 81 DSVESAQKEIALWFPD 96 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~ 96 (111)
|++++|.+|+.+|||+
T Consensus 117 d~~~~a~rE~~~~F~~ 132 (135)
T PF00334_consen 117 DSPEDAEREIAFFFPE 132 (135)
T ss_dssp SSHHHHHHHHHHHSTG
T ss_pred CCHHHHHHHHHHcCCc
Confidence 9999999999999986
No 20
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=4.1e-36 Score=208.18 Aligned_cols=96 Identities=55% Similarity=0.972 Sum_probs=93.8
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++|++++|++||.+|++++||++|+++|+|||+++|+|.|+|||++||+++||++|..+.|+|||++||++.++|+||||
T Consensus 37 ~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav~~~r~l~Gp~~~~~~~p~slR~~~G~~~~~N~vH~s 116 (135)
T smart00562 37 LQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGS 116 (135)
T ss_pred ecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHHHHHHHHhCCCChhhcCCcchHHhhcccccceeEECC
Confidence 57999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 033807 81 DSVESAQKEIALWFPD 96 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~ 96 (111)
|++++|.+|+++|||.
T Consensus 117 d~~~~a~~e~~~~F~~ 132 (135)
T smart00562 117 DSPESAEREIALFFPE 132 (135)
T ss_pred CCHHHHHHHHHHcCCc
Confidence 9999999999999975
No 21
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1e-35 Score=216.15 Aligned_cols=99 Identities=38% Similarity=0.684 Sum_probs=92.6
Q ss_pred CccCHHHHHHHHHHh---------------------------------cCCCchHHHHHHhhcCcEEEEEEecCchHHHH
Q 033807 1 MTVDRPFAEKHYEDL---------------------------------SSKPFFGSLIEYITSGPVVAMIWEGEGVVKTG 47 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~---------------------------------~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~ 47 (111)
++||+++|++||.+| .+++||++|++||+||||++|+|.|+|||++|
T Consensus 40 ~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~ 119 (183)
T PRK14544 40 VKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLGTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVV 119 (183)
T ss_pred ecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccccccccccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHH
Confidence 479999999999954 78999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCChhhhccccc----------CCceEEeCCCHHHHHHHHHhhCCC-Ccc
Q 033807 48 RTIIGATNPAQSAPGTIRGDLAIVT----------GRNIIHGSDSVESAQKEIALWFPD-GPI 99 (111)
Q Consensus 48 r~l~Gp~~~~~a~p~slR~~fg~~~----------~~N~vH~Sds~~~A~~Ei~~fF~~-~~~ 99 (111)
|++|||++|..|.|+|||++||++. ++|+|||||++++|++||++||++ ++.
T Consensus 120 R~liGpt~p~~A~P~TIR~~fg~~~~~~~~~~~~~~~NavH~Sds~e~A~rEi~~fF~~~~~~ 182 (183)
T PRK14544 120 RKLVGPTSPHKAPPGTIRGDYSIDSPDLAAEEGRVVYNLVHASDSPEEAEREIKFWFREEEIL 182 (183)
T ss_pred HHHhCCCCccccCCCCchhhhcccccccccccccceeeEEECCCCHHHHHHHHHHhCChhhcc
Confidence 9999999999999999999999873 799999999999999999999965 553
No 22
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=61.45 E-value=1.5 Score=26.91 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=22.7
Q ss_pred ccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEE
Q 033807 2 TVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVV 34 (111)
Q Consensus 2 ~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv 34 (111)
.|+.++++.||+. .||+|..---.||++
T Consensus 23 ~~spe~V~~~ya~-----~YPeL~tA~v~gP~v 50 (65)
T PF14454_consen 23 SLSPEEVRDFYAA-----QYPELTTAEVEGPEV 50 (65)
T ss_pred CCCHHHHHHHHhh-----hChhhheeeecCCeE
Confidence 4789999999954 488888877788866
No 23
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=47.75 E-value=10 Score=23.42 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=22.3
Q ss_pred ccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEE
Q 033807 2 TVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVV 34 (111)
Q Consensus 2 ~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv 34 (111)
.+|.++.++||+. .||+|..---+||++
T Consensus 22 ~~spe~V~dfYs~-----~YPeLttA~v~gP~~ 49 (66)
T TIGR03738 22 AMSPEQVRDFYSA-----QYPELLNAEVEGPVV 49 (66)
T ss_pred CCCHHHHHHHHhc-----cCchheeeeeeCCeE
Confidence 5789999999965 478887777778865
No 24
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=42.82 E-value=23 Score=23.75 Aligned_cols=17 Identities=41% Similarity=0.868 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHhcCCCc
Q 033807 4 DRPFAEKHYEDLSSKPF 20 (111)
Q Consensus 4 s~~~a~~~Y~~~~~~~~ 20 (111)
+.+.|.+||..+.|++|
T Consensus 63 ~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 63 DQESADEFYEEFNGKPF 79 (110)
T ss_pred CHHHHHHHHHHhCCCcc
Confidence 56789999999999986
No 25
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=38.82 E-value=39 Score=24.07 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=22.1
Q ss_pred CceEEeCCCHHHHHHHHHhhCCCCc
Q 033807 74 RNIIHGSDSVESAQKEIALWFPDGP 98 (111)
Q Consensus 74 ~N~vH~Sds~~~A~~Ei~~fF~~~~ 98 (111)
+=.||++.+.+....-|..|||+.+
T Consensus 13 rv~iHaTED~~kV~eAL~~~~p~~~ 37 (149)
T COG1325 13 RVIIHATEDEEKVLEALENFFPEAI 37 (149)
T ss_pred EEEEEccCCHHHHHHHHHHhcCccc
Confidence 4469999999999999999999865
No 26
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=37.69 E-value=68 Score=21.96 Aligned_cols=52 Identities=10% Similarity=0.004 Sum_probs=36.3
Q ss_pred ccCHHHHHHHHHHhcCCC-----------chHHHHHHhhcCcEEEEEEecCchHHHHHHHhCC
Q 033807 2 TVDRPFAEKHYEDLSSKP-----------FFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGA 53 (111)
Q Consensus 2 ~ls~~~a~~~Y~~~~~~~-----------~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp 53 (111)
+|+.++++++|.+--+.- .-+...+++..--+-+.++..+.||++|.++-|.
T Consensus 48 kl~~eEle~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~ 110 (121)
T COG1504 48 KLALEELEELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGK 110 (121)
T ss_pred ccCHHHHHHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhcc
Confidence 467788888887544321 1255666677666777777788899999888875
No 27
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=34.46 E-value=38 Score=23.35 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=25.7
Q ss_pred HHhhcCcEEEEEEecC---chHHHHHHHhCCCCCCC
Q 033807 26 EYITSGPVVAMIWEGE---GVVKTGRTIIGATNPAQ 58 (111)
Q Consensus 26 ~~m~sgpvv~l~l~g~---nav~~~r~l~Gp~~~~~ 58 (111)
.--..|||.||...|. +...+|-+.+-.+||.-
T Consensus 81 heq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L 116 (126)
T PF14784_consen 81 HEQEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNL 116 (126)
T ss_pred eEeccceEEEEEeccCCCHHHHHHHHHHHHhhCCch
Confidence 4445799999999984 57788888888888753
No 28
>PRK14015 pepN aminopeptidase N; Provisional
Probab=33.89 E-value=1.2e+02 Score=27.41 Aligned_cols=69 Identities=13% Similarity=0.281 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCCc-hHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceE--EeCCC
Q 033807 7 FAEKHYEDLSSKPF-FGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNII--HGSDS 82 (111)
Q Consensus 7 ~a~~~Y~~~~~~~~-f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~v--H~Sds 82 (111)
....||...++.+- .+.-...-.+.| +.++++.+++|+-...=.-..|+-+|+.+|.=...|.+ |..|.
T Consensus 735 ~l~~f~~~~~~~~lv~~kwf~~qa~~~-------~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g 806 (875)
T PRK14015 735 ALADFYDRWKDDPLVMDKWFALQATSP-------APDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADG 806 (875)
T ss_pred HHHHHHHHhCCCchhhHHHHHHHhCCC-------CcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCC
Confidence 45778888877553 222222222223 57899999999843332335899999999975445544 76554
No 29
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=32.99 E-value=1.2e+02 Score=27.26 Aligned_cols=69 Identities=10% Similarity=0.264 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCCc-hHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCce--EEeCCC
Q 033807 7 FAEKHYEDLSSKPF-FGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNI--IHGSDS 82 (111)
Q Consensus 7 ~a~~~Y~~~~~~~~-f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~--vH~Sds 82 (111)
....||...++.+- .+.-...-.+.| .+++++.+++|+....=.-..|+.+|+.+|.=...|. +|..|.
T Consensus 725 ~l~~f~~~~~~~~lv~~kwf~~qa~~~-------~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g 796 (863)
T TIGR02414 725 ALAAFYQKWKDDPLVMDKWFALQATSP-------RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISG 796 (863)
T ss_pred HHHHHHHHHCCCchhHHHHHHHHhCCC-------cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCC
Confidence 35788888887553 222222222223 5789999999985433334589999999997433343 676554
No 30
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=31.58 E-value=56 Score=26.32 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCCc-hHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCc--eEEeCCC
Q 033807 6 PFAEKHYEDLSSKPF-FGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRN--IIHGSDS 82 (111)
Q Consensus 6 ~~a~~~Y~~~~~~~~-f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N--~vH~Sds 82 (111)
+....||...++.+- .+.=...-.+.| ++++++++++|+-...=.-..|+-+|+.+|.=...| .+|..|.
T Consensus 270 ~~L~~Fy~~w~~d~LV~dKWFalQA~~~-------~~~~l~~V~~L~~Hp~F~~~NPNrvRaLig~Fa~~N~~~FH~~dG 342 (367)
T PF11940_consen 270 EALEDFYERWKDDPLVMDKWFALQASSP-------SPDTLERVKKLMQHPAFDLKNPNRVRALIGAFAQANPVQFHAADG 342 (367)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHT---------STTHHHHHHHHTTSTTTTTT-HHHHHHHHHHHHHC-HHHHT-TTS
T ss_pred HHHHHHHHHHccChHHHHHHHHHHhCCC-------CccHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHhcChhhhcCCCC
Confidence 445788888887653 222111112222 368999999999432222348999999999743333 3566555
No 31
>KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism]
Probab=26.20 E-value=81 Score=22.06 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=32.4
Q ss_pred CCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCC
Q 033807 18 KPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNP 56 (111)
Q Consensus 18 ~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~ 56 (111)
+.|||-.+.++.|=|++.-++.-+-.-..+.+++|+..|
T Consensus 98 ~gF~P~i~~flrs~p~lG~i~~~p~i~~~~drl~~~~~p 136 (137)
T KOG1743|consen 98 RGFFPVIVVFLRSIPVLGWILNLPGIRSFLDRLAGPRVP 136 (137)
T ss_pred hhhhHHHHHHHHcCccccccccCccHHHHHHHhcCCCCC
Confidence 568999999999999998887777777788888887765
No 32
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=23.06 E-value=1.6e+02 Score=19.67 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCchHHHHHHhh
Q 033807 8 AEKHYEDLSSKPFFGSLIEYIT 29 (111)
Q Consensus 8 a~~~Y~~~~~~~~f~~lv~~m~ 29 (111)
+++||.++...|-...|++.|.
T Consensus 49 lR~~y~e~~~~P~~R~l~K~~~ 70 (108)
T TIGR03342 49 LRDFYAEYNISPAVRMLVKAMG 70 (108)
T ss_pred HHHHHHHHCCCCcHHHHHHHHH
Confidence 5899999988888888887776
No 33
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=21.11 E-value=1.5e+02 Score=22.04 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=38.2
Q ss_pred cCHHHHHHHHHHhcCC----CchHHHHHHhhcCc---EEEEEEecC------chHHHHHHHhC---CCCCCCCCCCChhh
Q 033807 3 VDRPFAEKHYEDLSSK----PFFGSLIEYITSGP---VVAMIWEGE------GVVKTGRTIIG---ATNPAQSAPGTIRG 66 (111)
Q Consensus 3 ls~~~a~~~Y~~~~~~----~~f~~lv~~m~sgp---vv~l~l~g~------nav~~~r~l~G---p~~~~~a~p~slR~ 66 (111)
||+++..+ |..++.. .-...|+..++++. -+++.+.|- +.|+..+.+++ -+.|. .|.-||.
T Consensus 97 fseEQl~R-YEvfRrs~f~Ka~iKkL~~~itg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PL--qP~HIRE 173 (195)
T KOG3219|consen 97 FSEEQLSR-YEVFRRSAFPKAQIKKLMSSITGQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPL--QPKHIRE 173 (195)
T ss_pred cCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhCCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCC--CcHHHHH
Confidence 56777665 3555543 33566888888754 566776663 56666666663 22222 5777776
Q ss_pred hc
Q 033807 67 DL 68 (111)
Q Consensus 67 ~f 68 (111)
.|
T Consensus 174 A~ 175 (195)
T KOG3219|consen 174 AY 175 (195)
T ss_pred HH
Confidence 66
No 34
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=20.72 E-value=1.9e+02 Score=19.37 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCCchHHHHHHhh
Q 033807 8 AEKHYEDLSSKPFFGSLIEYIT 29 (111)
Q Consensus 8 a~~~Y~~~~~~~~f~~lv~~m~ 29 (111)
+++||.++...|-...|++.|.
T Consensus 50 lR~~y~e~~~~P~~R~l~K~~~ 71 (109)
T PRK11508 50 VRDFYLEFNTSPAIRMLVKAMA 71 (109)
T ss_pred HHHHHHHHCCCCcHHHHHHHHH
Confidence 5899999988888888888775
Done!