Query 033807
Match_columns 111
No_of_seqs 130 out of 1042
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fkx_A NDK B, nucleoside dipho 100.0 1E-47 3.5E-52 273.2 10.0 111 1-111 48-159 (161)
2 3q8u_A Nucleoside diphosphate 100.0 1.6E-47 5.4E-52 271.4 10.7 111 1-111 38-149 (157)
3 1u8w_A Nucleoside diphosphate 100.0 3.3E-47 1.1E-51 267.8 11.8 111 1-111 38-148 (149)
4 1pku_A Nucleoside diphosphate 100.0 2.7E-47 9.1E-52 268.6 10.2 111 1-111 39-149 (150)
5 3r9l_A Nucleoside diphosphate 100.0 1.8E-47 6E-52 270.7 8.5 111 1-111 44-155 (155)
6 3l7u_A Nucleoside diphosphate 100.0 4.5E-47 1.5E-51 272.3 10.5 111 1-111 61-172 (172)
7 1nb2_A Nucleoside diphosphate 100.0 1.3E-46 4.4E-51 265.1 11.0 111 1-111 39-150 (150)
8 3mpd_A Nucleoside diphosphate 100.0 1.2E-46 4.2E-51 265.4 10.9 108 1-110 42-151 (151)
9 3js9_A Nucleoside diphosphate 100.0 1E-46 3.5E-51 267.0 10.4 110 1-110 46-156 (156)
10 3fkb_A NDP kinase, NDK, nucleo 100.0 1.6E-46 5.4E-51 265.8 11.3 110 1-111 45-155 (155)
11 1xiq_A Nucleoside diphosphate 100.0 1.9E-46 6.3E-51 266.0 10.6 111 1-111 46-157 (157)
12 2vu5_A Nucleoside diphosphate 100.0 2E-46 6.9E-51 263.6 10.7 110 1-110 38-148 (148)
13 1s57_A Nucleoside diphosphate 100.0 3.4E-46 1.2E-50 263.7 11.3 111 1-111 42-153 (153)
14 3bbb_A Nucleoside diphosphate 100.0 2.1E-46 7.2E-51 264.2 10.0 111 1-111 40-151 (151)
15 3b54_A NDK, NDP kinase, nucleo 100.0 3.8E-46 1.3E-50 265.3 8.8 111 1-111 50-161 (161)
16 1zs6_A Nucleoside diphosphate 100.0 8.8E-46 3E-50 265.2 9.6 111 1-111 58-169 (169)
17 2dxe_A Nucleoside diphosphate 100.0 1.5E-45 5.2E-50 262.0 9.8 110 1-111 44-157 (160)
18 2az3_A Nucleoside diphosphate 100.0 2.5E-45 8.5E-50 261.7 9.9 111 1-111 45-158 (164)
19 1w7w_A Nucleoside diphosphate 100.0 2.4E-45 8.2E-50 265.5 9.7 111 1-111 69-180 (182)
20 4hr2_A Nucleoside diphosphate 100.0 4.9E-45 1.7E-49 255.7 10.9 99 1-99 44-143 (145)
21 2hur_A NDK, nucleoside diphosp 100.0 1.5E-44 5.3E-49 252.5 11.6 103 1-103 39-142 (142)
22 1nhk_R Nucleoside diphosphate 100.0 1.9E-44 6.4E-49 252.6 10.4 103 1-103 39-142 (144)
23 4dz6_A Nucleoside diphosphate 100.0 3.7E-45 1.3E-49 265.9 7.0 111 1-111 63-189 (190)
24 3evo_A NDP kinase, NDK, nucleo 100.0 1.6E-43 5.3E-48 248.4 11.3 97 1-97 43-140 (146)
25 1wkj_A Nucleoside diphosphate 100.0 2.3E-43 7.8E-48 245.3 11.2 96 1-96 38-133 (137)
26 3ztp_A Nucleoside diphosphate 100.0 7.3E-44 2.5E-48 249.1 8.2 98 1-98 40-141 (142)
27 1ehw_A NDPK H4, nucleoside dip 100.0 1.8E-43 6.3E-48 251.6 10.1 101 1-101 61-162 (162)
28 1k44_A Nucleoside diphosphate 100.0 5.5E-43 1.9E-47 243.1 11.3 96 1-96 39-135 (136)
29 1xqi_A Nucleoside diphosphate 100.0 3E-39 1E-43 235.7 6.9 99 1-99 52-194 (195)
30 3bh7_B Protein XRP2; protein-p 99.9 9.2E-25 3.1E-29 171.0 4.9 74 1-96 272-345 (352)
31 3i5g_C Myosin catalytic light 55.2 8 0.00027 25.4 2.6 32 2-33 117-154 (159)
32 1nkz_B Light-harvesting protei 29.0 36 0.0012 18.2 2.0 14 3-16 3-16 (41)
33 1lgh_B LH II, B800/850, light 24.5 48 0.0016 18.1 2.0 14 3-16 8-21 (45)
34 1jb0_J Photosystem 1 reaction 23.8 37 0.0013 18.2 1.4 15 84-98 23-37 (41)
35 2vs7_A I-DMOI, homing endonucl 22.8 85 0.0029 21.5 3.6 30 31-61 158-187 (199)
36 2ikb_A Hypothetical protein NM 20.7 49 0.0017 22.7 1.9 58 2-67 50-117 (167)
No 1
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=1e-47 Score=273.20 Aligned_cols=111 Identities=56% Similarity=0.999 Sum_probs=108.3
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||+||+|+|+|||++||+|||||||.+|.|+|||++||++..+|+||||
T Consensus 48 ~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~vHgS 127 (161)
T 4fkx_A 48 LQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGS 127 (161)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEEC
T ss_pred ecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEeccChHHHHHHHhcCCChhhcCCCChhHhhCCCccceeEEeC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
||+++|++||++||++ ++++|+.+.++|+|+
T Consensus 128 Ds~esA~rEI~~fF~~~e~~~~~~~~~~~~ye 159 (161)
T 4fkx_A 128 DSVESAKREIAFWFKAEELVSWTSHSVKQIYE 159 (161)
T ss_dssp SSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCS
T ss_pred CCHHHHHHHHHHcCChhhcccccccchhheec
Confidence 9999999999999955 899999999999996
No 2
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=1.6e-47 Score=271.41 Aligned_cols=111 Identities=52% Similarity=0.949 Sum_probs=108.5
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||+||+|+|+|||++||+|+|||||.+|.|+|||++||++..+|+||||
T Consensus 38 ~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp~~A~PgtIR~~fg~~~~~N~vHgS 117 (157)
T 3q8u_A 38 MQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGS 117 (157)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEEC
T ss_pred ecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHcCCCChhhcCCCChHHHhCCCCCCeeEEeC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
||+++|++||++|||+ ++++|..+.+.|+|+
T Consensus 118 Ds~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 149 (157)
T 3q8u_A 118 DSLESAEREINLWFNENEITSYASPRDAWLYE 149 (157)
T ss_dssp SSHHHHHHHHHHHCCGGGCCCCCCTTHHHHCC
T ss_pred CCHHHHHHHHHHcCChHhhcccccchHHHHHH
Confidence 9999999999999976 899999999999996
No 3
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=3.3e-47 Score=267.84 Aligned_cols=111 Identities=78% Similarity=1.354 Sum_probs=109.1
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+++|||||.+|.|+|||++||++..+|+||||
T Consensus 38 ~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgS 117 (149)
T 1u8w_A 38 ISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGS 117 (149)
T ss_dssp ECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEEC
T ss_pred ecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCchHHHHHHhCCCCcccCCCCCcHHHHCCCCcCceEEec
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCCCccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFPDGPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~~~~~~~~~~~~~~~~ 111 (111)
||+++|++||++|||+++++|..+.++|+|+
T Consensus 118 Ds~esA~rEi~~fF~~e~~~~~~~~~~~~~~ 148 (149)
T 1u8w_A 118 DSVESARKEIALWFPDGPVNWQSSVHPWVYE 148 (149)
T ss_dssp SSHHHHHHHHHHHCTTCCCCCCCTTGGGTSC
T ss_pred CCHHHHHHHHHHhCchhhccccccchhhhhc
Confidence 9999999999999998999999999999996
No 4
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=2.7e-47 Score=268.59 Aligned_cols=111 Identities=68% Similarity=1.239 Sum_probs=108.9
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+++|||||.+|.|+|||++||.+..+|+||||
T Consensus 39 ~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgS 118 (150)
T 1pku_A 39 MNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGS 118 (150)
T ss_dssp ECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCSBTTBCSEEEC
T ss_pred ecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccchHHHHHHHhCCCCcccCCCCChHHHhCCCccceeEEeC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCCCccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFPDGPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~~~~~~~~~~~~~~~~ 111 (111)
||+++|++||++|||+++++|..+.++|+|+
T Consensus 119 Ds~esA~rEi~~fF~~e~~~~~~~~~~~~~~ 149 (150)
T 1pku_A 119 DSVDNGKKEIALWFPEGLAEWRSNLHPWIYE 149 (150)
T ss_dssp SSHHHHHHHHHHHCTTCCCCCCCTTHHHHCC
T ss_pred CCHHHHHHHHHHhCcHHhccccccchhhhhc
Confidence 9999999999999988999999999999996
No 5
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=1.8e-47 Score=270.72 Aligned_cols=111 Identities=50% Similarity=0.975 Sum_probs=70.2
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||+||+|+|+|||++||+|+|||||.+|.|+|||++||++..+|+||||
T Consensus 44 ~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgS 123 (155)
T 3r9l_A 44 FVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGS 123 (155)
T ss_dssp C---------------------------CCSCCEEEEEESTTHHHHHHHHHCCSCTTTCCTTSHHHHHCCSSTTCCEEEC
T ss_pred ecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCC-CCccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFP-DGPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~-~~~~~~~~~~~~~~~~ 111 (111)
||+++|++||++||+ +++++|..+.++|+|+
T Consensus 124 Ds~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 155 (155)
T 3r9l_A 124 ANLDDAAREIALWFKPEEVASWSCSLESHIYE 155 (155)
T ss_dssp SSHHHHHHHHHHHCCSTTCC------------
T ss_pred CCHHHHHHHHHHcCChHhccccccchhhhhcC
Confidence 999999999999995 4899999999999996
No 6
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.5e-47 Score=272.33 Aligned_cols=111 Identities=59% Similarity=1.062 Sum_probs=108.5
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||+||+|+|+|||++||+|||||||.+|.|+|||++||++..+|+||||
T Consensus 61 ~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~VHgS 140 (172)
T 3l7u_A 61 MQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 140 (172)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSTTTCCTTSHHHHHCCCGGGCCEEEC
T ss_pred EeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHcCCCChhhcCCCChhHHhcCCCCCcEEEeC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
||+++|++||++||++ ++++|..+.++|+|+
T Consensus 141 Ds~esA~rEI~~fF~~~e~~~~~~~~~~~~ye 172 (172)
T 3l7u_A 141 DSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 172 (172)
T ss_dssp SSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCC
T ss_pred CCHHHHHHHHHHcCChhhccccccchhhhhcC
Confidence 9999999999999976 899999999999996
No 7
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=1.3e-46 Score=265.11 Aligned_cols=111 Identities=48% Similarity=0.780 Sum_probs=108.4
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+|+|||||.+|.|+|||++||.+..+|+||||
T Consensus 39 ~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~naV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgS 118 (150)
T 1nb2_A 39 MVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGS 118 (150)
T ss_dssp CCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTHHHHHHHHHCCSSTTSSCTTSHHHHSCSCSSSCSEEEC
T ss_pred ecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCHHHHHHHHhCCCCcccCCCCChHHHhcCCccceeEEeC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
||+++|++||++||++ ++++|..+.++|+|+
T Consensus 119 Ds~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 150 (150)
T 1nb2_A 119 DSAGSAAKEIGAFFGGGEAASGTPAAAADIYG 150 (150)
T ss_dssp SSHHHHHHHHHHHSCSSSSCCCCCTTGGGTCC
T ss_pred CCHHHHHHHHHHhCCccccccccccchhhhcC
Confidence 9999999999999965 899999999999996
No 8
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=1.2e-46 Score=265.41 Aligned_cols=108 Identities=49% Similarity=0.887 Sum_probs=105.0
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||+||+|+|+|||++||+|||||||.+|.|+|||++||++..+|+||||
T Consensus 42 ~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~~a~PgtiR~~fg~~~~~N~vHgS 121 (151)
T 3mpd_A 42 VIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGS 121 (151)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTTTSCTTSHHHHHCCSSTTCSEEEC
T ss_pred EcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCCcHHHHHHHHhCCCChhhcCCCChhHHhCCCccceeEEeC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCC--CCccccccCCCCccc
Q 033807 81 DSVESAQKEIALWFP--DGPINWQSSLHPWIY 110 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~--~~~~~~~~~~~~~~~ 110 (111)
||+++|++||++||+ +++++| +.++|+|
T Consensus 122 Ds~esA~rEi~~fF~~~~e~~~~--~~~~~~~ 151 (151)
T 3mpd_A 122 DCVENAEKEIKLWIGDDVQPVSF--FDKEWIY 151 (151)
T ss_dssp SSHHHHHHHHHHHTCSCCCCCCC--TTHHHHC
T ss_pred CCHHHHHHHHHHhCCCcchheee--ccccccC
Confidence 999999999999997 589999 8889987
No 9
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=1e-46 Score=267.02 Aligned_cols=110 Identities=44% Similarity=0.858 Sum_probs=107.5
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+|+|||||.+|.|+|||++||++..+|+||||
T Consensus 46 ~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg~naV~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgS 125 (156)
T 3js9_A 46 EHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHAS 125 (156)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEETTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEEC
T ss_pred ecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEeccchHHHHHHhcCCCCccccCCCCHHHHhCCCCCceeEEcC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-CccccccCCCCccc
Q 033807 81 DSVESAQKEIALWFPD-GPINWQSSLHPWIY 110 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~ 110 (111)
||+++|++||++||++ ++++|+.+.++|+|
T Consensus 126 Ds~esA~rEI~~fF~~~e~~~~~~~~~~~~~ 156 (156)
T 3js9_A 126 SSAEDAARECALWFTPEQLVTWERSVGGWIY 156 (156)
T ss_dssp CSHHHHHHHHHHHSCGGGCCCCCCTTGGGTC
T ss_pred CCHHHHHHHHHHcCChhhcccccccchhhcC
Confidence 9999999999999955 89999999999998
No 10
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=1.6e-46 Score=265.83 Aligned_cols=110 Identities=54% Similarity=0.942 Sum_probs=106.1
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||+||+|+|+|||++||+|+|||||.+|.|+|||++||++..+|+||||
T Consensus 45 ~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgS 124 (155)
T 3fkb_A 45 LVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGS 124 (155)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEEC
T ss_pred ecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCC-CCccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFP-DGPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~-~~~~~~~~~~~~~~~~ 111 (111)
||+++|++||++||+ +++++|..+. .|+|+
T Consensus 125 Ds~esA~rEi~~fF~~~e~~~~~~~~-~~~~~ 155 (155)
T 3fkb_A 125 DSVESANREIALWFKPEELLTEVKPN-PNLYE 155 (155)
T ss_dssp SSHHHHHHHHHHHCCGGGSCSCCCCC-TTSCC
T ss_pred CCHHHHHHHHHHcCChhhcccccccc-hhhcC
Confidence 999999999999995 4899999887 59986
No 11
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=1.9e-46 Score=265.95 Aligned_cols=111 Identities=48% Similarity=0.949 Sum_probs=108.4
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+++|||||.+|.|+|||++||++..+|+||||
T Consensus 46 ~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~T~p~~A~pgtIR~~fg~~~~~N~vHgS 125 (157)
T 1xiq_A 46 LNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGS 125 (157)
T ss_dssp ECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEESTTHHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEEC
T ss_pred ecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEecccchHHHHHHcCCCCCCcCCCCChHHHhCCCCCceeEEeC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
||+++|++||++|||+ ++++|..+.++|+|+
T Consensus 126 Ds~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 157 (157)
T 1xiq_A 126 DSVASANKEINIWFKAEELTQWKHHMKEWICS 157 (157)
T ss_dssp SSHHHHHHHHHHHCCGGGSCCCCCGGGGGTCC
T ss_pred CCHHHHHHHHHHhCCccccccccccchhhhcC
Confidence 9999999999999976 899999999999996
No 12
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=2e-46 Score=263.58 Aligned_cols=110 Identities=50% Similarity=1.009 Sum_probs=107.4
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+++|||||.+|.|+|||++||.+..+|+||||
T Consensus 38 ~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgS 117 (148)
T 2vu5_A 38 MQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGS 117 (148)
T ss_dssp ECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTHHHHHHHHHCCSSTTTSCTTSHHHHHCCCSTTCSEEEC
T ss_pred ecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccChHHHHHHHhCCCCccccCCCChHHHhcCCcccceEEeC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-CccccccCCCCccc
Q 033807 81 DSVESAQKEIALWFPD-GPINWQSSLHPWIY 110 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~ 110 (111)
||+++|++||++||++ ++++|..+.++|+|
T Consensus 118 Ds~esA~rEi~~fF~~~e~~~~~~~~~~~~~ 148 (148)
T 2vu5_A 118 DSLESAEREIGIFFKEEELVDYSKLMNEWIY 148 (148)
T ss_dssp SSHHHHHHHHHHHCCGGGSCCCCCGGGGGTC
T ss_pred CCHHHHHHHHHHhCCchhccccccccccccC
Confidence 9999999999999975 79999999999998
No 13
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=3.4e-46 Score=263.69 Aligned_cols=111 Identities=58% Similarity=1.052 Sum_probs=108.2
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+++|||||.+|.|+|||++||.+..+|+||||
T Consensus 42 ~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgS 121 (153)
T 1s57_A 42 FQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGS 121 (153)
T ss_dssp ECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETTHHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCCEEEC
T ss_pred CCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEecccHHHHHHHHhCCCCccccCCcchHHHhcCCCcCceEEcC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
||+++|++||++||++ ++++|....++|+|+
T Consensus 122 Ds~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 153 (153)
T 1s57_A 122 DSPENGKREIGLWFKEGELCKWDSALATWLRE 153 (153)
T ss_dssp SSHHHHHHHHHHHSCTTCCCCCCCTTHHHHCC
T ss_pred CCHHHHHHHHHHhCCchhcccccccchhhhhC
Confidence 9999999999999965 899999999999996
No 14
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=2.1e-46 Score=264.24 Aligned_cols=111 Identities=57% Similarity=1.059 Sum_probs=108.0
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++|++++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+|+|||||.+|.|+|||++||.+..+|+||||
T Consensus 40 ~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgS 119 (151)
T 3bbb_A 40 LRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 119 (151)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEEC
T ss_pred ecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCCHHHHHHHHhCCCCcccCCCCCcHHHhcCCcccceEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
||+++|++||++||++ ++++|..+.++|+|+
T Consensus 120 Ds~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 151 (151)
T 3bbb_A 120 DSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 151 (151)
T ss_dssp SSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCC
T ss_pred CCHHHHHHHHHHhCChhhcccccccchhhhcC
Confidence 9999999999999965 799999999999996
No 15
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-46 Score=265.31 Aligned_cols=111 Identities=52% Similarity=1.029 Sum_probs=101.3
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+|+|||||.+|.|+|||++||++..+|+||||
T Consensus 50 ~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgS 129 (161)
T 3b54_A 50 VKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGS 129 (161)
T ss_dssp ECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEEC
T ss_pred ecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEEeccChHHHHHHHhCCCCcccCCCCChHHHhcCCCCCceEEeC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
||+++|++||++||++ ++++|..+.++|+|+
T Consensus 130 Ds~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 161 (161)
T 3b54_A 130 DSVDSAEREINLWFKKEELVDWESNQAKWIYE 161 (161)
T ss_dssp SSHHHHHHHHHHHSCSTTCCCCCCTTHHHHCC
T ss_pred CCHHHHHHHHHHhCCchhcccccccchhhhcC
Confidence 9999999999999965 899999999999996
No 16
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=8.8e-46 Score=265.16 Aligned_cols=111 Identities=53% Similarity=1.055 Sum_probs=108.3
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++|++++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+++|||||.+|.|+|||++||.+..+|+||||
T Consensus 58 ~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgS 137 (169)
T 1zs6_A 58 VQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGS 137 (169)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCSEEEC
T ss_pred ecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCchHHHHHHhCCCCcccCCCCChHHHHcCCCcCceEEec
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
||+++|++||++||++ ++++|....++|+|+
T Consensus 138 Ds~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 169 (169)
T 1zs6_A 138 DSVESARREIALWFRADELLCWEDSAGHWLYE 169 (169)
T ss_dssp SSHHHHHHHHHHHSCGGGSCCCCCTTHHHHCC
T ss_pred CCHHHHHHHHHHhCCchhhhcccccchhhhcC
Confidence 9999999999999965 899999999999996
No 17
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=1.5e-45 Score=261.98 Aligned_cols=110 Identities=47% Similarity=0.831 Sum_probs=106.9
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCC---ceE
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR---NII 77 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~---N~v 77 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+++|||||.+|.|+|||++||.+..+ |+|
T Consensus 44 ~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~~~~N~v 123 (160)
T 2dxe_A 44 IWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVI 123 (160)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSGGGSCTTSHHHHHCCCCSSSCCCSE
T ss_pred ecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCHHHHHHHHhCCCCCCcCCCCChHHHhcCCcccCcCceE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EeCCCHHHHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 78 HGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 78 H~Sds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
|||||+++|++||++||++ ++++| ...++|+|+
T Consensus 124 HgSDs~esA~rEi~~fF~~~e~~~~-~~~~~~~~~ 157 (160)
T 2dxe_A 124 HASDSKESAEREISLFFKPEELFEY-PRAADWFYK 157 (160)
T ss_dssp EECSSHHHHHHHHHHHCCGGGCCCC-CCTTHHHHC
T ss_pred EcCCCHHHHHHHHHHhCCchhhccc-cchhhhHhc
Confidence 9999999999999999965 79999 999999996
No 18
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=2.5e-45 Score=261.75 Aligned_cols=111 Identities=45% Similarity=0.919 Sum_probs=108.2
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+++|||||.+|.|+|||++||++..+|+||||
T Consensus 45 ~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgS 124 (164)
T 2az3_A 45 MRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGS 124 (164)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCCSSSCSEEEC
T ss_pred ecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEccccHHHHHHHHhCCCCccccCCCcchhhhcccccCceEEec
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHH--HHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 81 DSVE--SAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~--~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
||++ +|++||++||++ ++++|....++|+|+
T Consensus 125 Ds~e~gsA~rEi~~fF~~~e~~~~~~~~~~~~~~ 158 (164)
T 2az3_A 125 DHEDEGANEREIALFFDDDELVDWDRDASAWVYE 158 (164)
T ss_dssp CTTSTTHHHHHHHHHCCTTSSCCCCCTTHHHHCC
T ss_pred CCcchhhHHHHHHHcCCchhhcccccchHHHHHh
Confidence 9999 999999999965 899999999999996
No 19
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=2.4e-45 Score=265.45 Aligned_cols=111 Identities=55% Similarity=1.074 Sum_probs=108.1
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||+||+|+|+|||++||+|||||||.+|.|+|||++||++..+|+||||
T Consensus 69 ~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvleG~naV~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgS 148 (182)
T 1w7w_A 69 LIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGS 148 (182)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEEC
T ss_pred ecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEecccHHHHHHHHhCCCCCCCCCCCChHHHhCCCccceeEEeC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 81 DSVESAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
||+++|++||++||++ ++++|..+.++|+|+
T Consensus 149 Ds~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 180 (182)
T 1w7w_A 149 DGPETAKDEIKLWFKPEELVSFTSNSEKWIYG 180 (182)
T ss_dssp CSHHHHHHHHHHHCCGGGCCCCCCTTHHHHTC
T ss_pred CCHHHHHHHHHHhCCchhccccccccccceec
Confidence 9999999999999965 899999999999996
No 20
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=4.9e-45 Score=255.73 Aligned_cols=99 Identities=40% Similarity=0.712 Sum_probs=95.9
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||+||+|+|+|||++||+|+|||||.+|.|+|||++||++..+|+||||
T Consensus 44 ~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~tdp~~A~pgtIR~~fg~~~~~N~vHgS 123 (145)
T 4hr2_A 44 AHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGS 123 (145)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSTTTSCTTSHHHHHCSBTTBCSEEEC
T ss_pred ecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEEcCCcHhHHhhccCCCCcccCCCCCcHHHhcCCcCccceECC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-Ccc
Q 033807 81 DSVESAQKEIALWFPD-GPI 99 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~ 99 (111)
||+++|++||++|||+ +++
T Consensus 124 Ds~e~A~rEi~~fF~~~ei~ 143 (145)
T 4hr2_A 124 DAPETARVEIAFFFPEMNVY 143 (145)
T ss_dssp CSHHHHHHHHHHHCCGGGCC
T ss_pred CCHHHHHHHHHHhCChhhcc
Confidence 9999999999999987 454
No 21
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=1.5e-44 Score=252.48 Aligned_cols=103 Identities=42% Similarity=0.653 Sum_probs=99.6
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+++|||||.+|.|+|||++||.+..+|+||||
T Consensus 39 ~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgS 118 (142)
T 2hur_A 39 LHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGS 118 (142)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSTTTSCTTSHHHHHCSSSTTCSEEEC
T ss_pred ecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccHHHHHHHHhCCCCcccCCCCcchHHhCCCcccceEEeC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-Ccccccc
Q 033807 81 DSVESAQKEIALWFPD-GPINWQS 103 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~ 103 (111)
||+++|++||++||++ ++++|.+
T Consensus 119 Ds~esA~rEi~~fF~~~e~~~~~~ 142 (142)
T 2hur_A 119 DSVESAAREIAYFFGEGEVCPRTR 142 (142)
T ss_dssp SSHHHHHHHHHHHCCTTCSCCCCC
T ss_pred CCHHHHHHHHHHhCCchhhhccCC
Confidence 9999999999999965 7999863
No 22
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=1.9e-44 Score=252.59 Aligned_cols=103 Identities=44% Similarity=0.707 Sum_probs=99.9
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+++|||||.+|.|+|||++||.+..+|+||||
T Consensus 39 ~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgS 118 (144)
T 1nhk_R 39 QHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGS 118 (144)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSGGGCCTTSHHHHHCCSSSSCSEEEC
T ss_pred ecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCHHHHHHHHhCCCCCCcCCCCcchHHhCCCCcceeEEeC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC-Ccccccc
Q 033807 81 DSVESAQKEIALWFPD-GPINWQS 103 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~-~~~~~~~ 103 (111)
||+++|++||++||++ ++++|++
T Consensus 119 Ds~esA~rEi~~fF~~~e~~~~~~ 142 (144)
T 1nhk_R 119 DSLENAKIEIAYFFRETEIHSYPY 142 (144)
T ss_dssp SSHHHHHHHHHHHCCGGGCCCCCC
T ss_pred CCHHHHHHHHHHhCCchhhccccc
Confidence 9999999999999975 7999975
No 23
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=3.7e-45 Score=265.88 Aligned_cols=111 Identities=35% Similarity=0.581 Sum_probs=108.0
Q ss_pred CccCHHHHHHHHH-----HhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhccccc---
Q 033807 1 MTVDRPFAEKHYE-----DLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVT--- 72 (111)
Q Consensus 1 ~~ls~~~a~~~Y~-----~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~--- 72 (111)
++||+++|++||. +|+++|||++|++||+||||++|+|+|+|||++||+|+|||||.+|.|+|||++||++.
T Consensus 63 ~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvvamvleG~naV~~~R~l~GpTdP~~A~PgTIRg~fg~~~~~~ 142 (190)
T 4dz6_A 63 LIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKY 142 (190)
T ss_dssp EECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEEEEEEEETHHHHHHHHHCCSSGGGSCTTSHHHHHCCCCHHH
T ss_pred ecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEEEEEecCCHHHHHHHHcCCCChhhcCCCChHHHhcCChhhh
Confidence 4799999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred -------CCceEEeCCCHHHHHHHHHhhCCC-CccccccCCCCcccC
Q 033807 73 -------GRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE 111 (111)
Q Consensus 73 -------~~N~vH~Sds~~~A~~Ei~~fF~~-~~~~~~~~~~~~~~~ 111 (111)
.+|+||||||+++|++||++||++ ++++|+.+.++|+|.
T Consensus 143 a~~~~~~~~N~VHgSDS~esA~rEI~~fF~~~e~~~~~~~~~~~~y~ 189 (190)
T 4dz6_A 143 SNEKGFSIYNVIHASANEADAMREIPIWFKDNEILNYKRDDECEHYY 189 (190)
T ss_dssp HHHHTCCCCCSEEECCSHHHHHHHHHHHCCGGGSCCCCCTTHHHHTC
T ss_pred ccccccccceeEEcCCCHHHHHHHHHHcCCcHHhccccccchhheec
Confidence 999999999999999999999976 899999999999984
No 24
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=1.6e-43 Score=248.40 Aligned_cols=97 Identities=41% Similarity=0.782 Sum_probs=93.5
Q ss_pred Ccc-CHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEe
Q 033807 1 MTV-DRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHG 79 (111)
Q Consensus 1 ~~l-s~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~ 79 (111)
++| |+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+|||||||.+|.|+|||++||++..+|+|||
T Consensus 43 ~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~naV~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHg 122 (146)
T 3evo_A 43 WSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHA 122 (146)
T ss_dssp ESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEETTHHHHHHHHHCCSSTTTCCTTSHHHHHCCSSSCCSEEE
T ss_pred eccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHcCCCCcccCCCCChHHHhCCCccceeEEe
Confidence 478 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCCC
Q 033807 80 SDSVESAQKEIALWFPDG 97 (111)
Q Consensus 80 Sds~~~A~~Ei~~fF~~~ 97 (111)
|||+++|++||++|||+.
T Consensus 123 SDs~esA~rEi~~fF~~~ 140 (146)
T 3evo_A 123 SDSEDSAVDEISIWFPET 140 (146)
T ss_dssp CCSHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHcCChh
Confidence 999999999999999863
No 25
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=2.3e-43 Score=245.26 Aligned_cols=96 Identities=52% Similarity=0.913 Sum_probs=94.2
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+++|||||.+|.|+|||++||++..+|+||||
T Consensus 38 ~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~aV~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgS 117 (137)
T 1wkj_A 38 MQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGS 117 (137)
T ss_dssp ECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEEC
T ss_pred ecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcHHHHHHHHhCCCCCCcCCCCcchHHhCCCcccceEEec
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 033807 81 DSVESAQKEIALWFPD 96 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~ 96 (111)
||+++|++||++||++
T Consensus 118 Ds~esA~rEi~~fF~~ 133 (137)
T 1wkj_A 118 ATLEDAQREIALFFRP 133 (137)
T ss_dssp SSHHHHHHHHHHHSCG
T ss_pred CCHHHHHHHHHHhCCh
Confidence 9999999999999975
No 26
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=7.3e-44 Score=249.07 Aligned_cols=98 Identities=41% Similarity=0.636 Sum_probs=95.0
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCC---CCCChhhhcccccCCceE
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQS---APGTIRGDLAIVTGRNII 77 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a---~p~slR~~fg~~~~~N~v 77 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+|+|||||.+| .|+|||++||++..+|+|
T Consensus 40 ~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~naV~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~v 119 (142)
T 3ztp_A 40 FRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAI 119 (142)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSE
T ss_pred ccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeE
Confidence 47999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred EeCCCHHHHHHHHHhhCCC-Cc
Q 033807 78 HGSDSVESAQKEIALWFPD-GP 98 (111)
Q Consensus 78 H~Sds~~~A~~Ei~~fF~~-~~ 98 (111)
|||||+++|++||++|||+ ++
T Consensus 120 HgSDs~esA~rEi~~fF~~~e~ 141 (142)
T 3ztp_A 120 HASDSPESAQYEICFIFSGLEI 141 (142)
T ss_dssp EECCSHHHHHHHHHHHCCGGGC
T ss_pred EeCCCHHHHHHHHHHcCCcccc
Confidence 9999999999999999976 44
No 27
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=1.8e-43 Score=251.62 Aligned_cols=101 Identities=51% Similarity=0.991 Sum_probs=97.8
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+++|||||.+|.|+|||++||.+..+|+||||
T Consensus 61 ~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~T~p~~A~PgtIR~~fg~~~~~N~vHgS 140 (162)
T 1ehw_A 61 LQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHAS 140 (162)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCCSSCCSEEEC
T ss_pred ecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCCCCCCChHHHhCCCCCCeEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhCC-CCcccc
Q 033807 81 DSVESAQKEIALWFP-DGPINW 101 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~-~~~~~~ 101 (111)
||+++|++||++||+ +++++|
T Consensus 141 Ds~esA~rEi~~fF~~~e~~~~ 162 (162)
T 1ehw_A 141 DSVEGAQREIQLWFQSSELVSW 162 (162)
T ss_dssp SSHHHHHHHHHHHCCGGGCCCC
T ss_pred CCHHHHHHHHHHhCChhhcccC
Confidence 999999999999995 478877
No 28
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=5.5e-43 Score=243.09 Aligned_cols=96 Identities=57% Similarity=0.950 Sum_probs=94.2
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCC-CCCCCChhhhcccccCCceEEe
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPA-QSAPGTIRGDLAIVTGRNIIHG 79 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~-~a~p~slR~~fg~~~~~N~vH~ 79 (111)
++||+++|++||.+|+++|||++|++||+||||++|+|+|+|||++||+++|||||. +|.|+|||++||++..+|+|||
T Consensus 39 ~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p~~~A~pgtiR~~fg~~~~~N~vHg 118 (136)
T 1k44_A 39 RTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHG 118 (136)
T ss_dssp ECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTHHHHHHHHHCCSSTTTTSCTTSHHHHHCCCSTTCCEEE
T ss_pred ecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCHHHHHHHHhCCCCccccCCCCCcHHHhcCCccceEEEe
Confidence 479999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 033807 80 SDSVESAQKEIALWFPD 96 (111)
Q Consensus 80 Sds~~~A~~Ei~~fF~~ 96 (111)
|||+++|++||++||++
T Consensus 119 SDs~esA~rEi~~fF~~ 135 (136)
T 1k44_A 119 SDSAESAQREIALWFPG 135 (136)
T ss_dssp CSSHHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999999985
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=3e-39 Score=235.73 Aligned_cols=99 Identities=34% Similarity=0.619 Sum_probs=94.9
Q ss_pred CccCHHHHHHHH-------------H--------------------HhcCCCchHHHHHHhhcCcEEEEEEecCchHHHH
Q 033807 1 MTVDRPFAEKHY-------------E--------------------DLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTG 47 (111)
Q Consensus 1 ~~ls~~~a~~~Y-------------~--------------------~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~ 47 (111)
+++|+++|++|| . +|++++||+.|++||+||||++|+|+|+|||++|
T Consensus 52 ~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~ 131 (195)
T 1xqi_A 52 VKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIV 131 (195)
T ss_dssp ECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHSCCCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHH
T ss_pred ecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhccccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHH
Confidence 479999999999 8 9999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCChhhhcccccCC----------ceEEeCCCHHHHHHHHHhhCCC-Ccc
Q 033807 48 RTIIGATNPAQSAPGTIRGDLAIVTGR----------NIIHGSDSVESAQKEIALWFPD-GPI 99 (111)
Q Consensus 48 r~l~Gp~~~~~a~p~slR~~fg~~~~~----------N~vH~Sds~~~A~~Ei~~fF~~-~~~ 99 (111)
|+++|||||.+|.|+|||++||.+..+ |+||||||+++|++||++||++ +++
T Consensus 132 R~l~GpTdP~~A~pgTIRg~fg~~~~~~~~~~~~~~~N~vHgSDS~esA~rEi~~~F~~~e~~ 194 (195)
T 1xqi_A 132 RKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFREEEVL 194 (195)
T ss_dssp HHHHCCSCGGGSCTTSHHHHHCCCCHHHHHHTTSCCCCSEEECSSHHHHHHHHHHHCCGGGSC
T ss_pred HHHhCCCCCCcCCCCchhHhhcCchhhhccccccccceEEEcCCCHHHHHHHHHHhCChhhcc
Confidence 999999999999999999999999888 9999999999999999999965 554
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.90 E-value=9.2e-25 Score=171.04 Aligned_cols=74 Identities=18% Similarity=0.374 Sum_probs=70.1
Q ss_pred CccCHHHHHHHHHHhcCCCchHHHHHHhhcCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhhcccccCCceEEeC
Q 033807 1 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 80 (111)
Q Consensus 1 ~~ls~~~a~~~Y~~~~~~~~f~~lv~~m~sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~fg~~~~~N~vH~S 80 (111)
++|++++|++||.+|+ ++|++||+||||++|+|+|+|||+.||+|+|+|+| .|+||||
T Consensus 272 ~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vleG~~av~~~R~l~g~t~p-----------------gN~vHgS 329 (352)
T 3bh7_B 272 VSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFN-----------------GTKMFVS 329 (352)
T ss_dssp ECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEESTTHHHHHHHHHHHHCT-----------------TSCEEEC
T ss_pred ccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEECcCHHHHHHHHhcCCCC-----------------CceEEec
Confidence 5799999999999999 77999999999999999999999999999999995 2999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 033807 81 DSVESAQKEIALWFPD 96 (111)
Q Consensus 81 ds~~~A~~Ei~~fF~~ 96 (111)
||+++|++||++||+.
T Consensus 330 ds~esA~~Ei~~fF~~ 345 (352)
T 3bh7_B 330 ESKETASGDVDSFYNF 345 (352)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCc
Confidence 9999999999999963
No 31
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=55.19 E-value=8 Score=25.38 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=25.3
Q ss_pred ccCHHHHHHHHHHh------cCCCchHHHHHHhhcCcE
Q 033807 2 TVDRPFAEKHYEDL------SSKPFFGSLIEYITSGPV 33 (111)
Q Consensus 2 ~ls~~~a~~~Y~~~------~~~~~f~~lv~~m~sgpv 33 (111)
.|+++++.++.... .|+--|.+.++.|++||+
T Consensus 117 ~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~p~ 154 (159)
T 3i5g_C 117 RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCCCC
Confidence 57888888887643 246679999999999985
No 32
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=29.02 E-value=36 Score=18.21 Aligned_cols=14 Identities=7% Similarity=-0.038 Sum_probs=11.6
Q ss_pred cCHHHHHHHHHHhc
Q 033807 3 VDRPFAEKHYEDLS 16 (111)
Q Consensus 3 ls~~~a~~~Y~~~~ 16 (111)
||+++|+||.....
T Consensus 3 LT~~EA~EfH~~~~ 16 (41)
T 1nkz_B 3 LTAEQSEELHKYVI 16 (41)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 79999999976654
No 33
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=24.51 E-value=48 Score=18.08 Aligned_cols=14 Identities=7% Similarity=-0.031 Sum_probs=11.6
Q ss_pred cCHHHHHHHHHHhc
Q 033807 3 VDRPFAEKHYEDLS 16 (111)
Q Consensus 3 ls~~~a~~~Y~~~~ 16 (111)
||+++|+||.....
T Consensus 8 LT~~EA~EfH~~~~ 21 (45)
T 1lgh_B 8 LTEEEAIAVHDQFK 21 (45)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 79999999976654
No 34
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=23.78 E-value=37 Score=18.19 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=10.7
Q ss_pred HHHHHHHHhhCCCCc
Q 033807 84 ESAQKEIALWFPDGP 98 (111)
Q Consensus 84 ~~A~~Ei~~fF~~~~ 98 (111)
..-..|++-|||+-+
T Consensus 23 Ag~lIEiNRffPD~L 37 (41)
T 1jb0_J 23 AGILIEFNRFYPDLL 37 (41)
T ss_dssp HHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHhCcccc
Confidence 344578888998754
No 35
>2vs7_A I-DMOI, homing endonuclease I-DMOI; protein/nucleic acid crystallography; 2.05A {Desulfurococcus mobilis} PDB: 2vs8_A 1b24_A
Probab=22.79 E-value=85 Score=21.55 Aligned_cols=30 Identities=10% Similarity=-0.161 Sum_probs=22.0
Q ss_pred CcEEEEEEecCchHHHHHHHhCCCCCCCCCC
Q 033807 31 GPVVAMIWEGEGVVKTGRTIIGATNPAQSAP 61 (111)
Q Consensus 31 gpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p 61 (111)
..+..+++.|. .+.++.+.||++.+.+..|
T Consensus 158 ~~~y~L~Is~~-~~~~F~~~IGf~~~~k~~~ 187 (199)
T 2vs7_A 158 HGVYVLNISLR-DRIKFVHTILSSHLNPLPP 187 (199)
T ss_dssp TTEEEEEECGG-GHHHHHHHTTTCCC-----
T ss_pred CCeEEEEECch-HHHHHHHHcCCCCcccccc
Confidence 45677889999 9999999999999876543
No 36
>2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, PR structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.2.1.9 PDB: 2is5_A*
Probab=20.66 E-value=49 Score=22.65 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=35.0
Q ss_pred ccCHHHHHHHHHHhc-CCCchHH---HHHHhh------cCcEEEEEEecCchHHHHHHHhCCCCCCCCCCCChhhh
Q 033807 2 TVDRPFAEKHYEDLS-SKPFFGS---LIEYIT------SGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGD 67 (111)
Q Consensus 2 ~ls~~~a~~~Y~~~~-~~~~f~~---lv~~m~------sgpvv~l~l~g~nav~~~r~l~Gp~~~~~a~p~slR~~ 67 (111)
.||+++|.++|..+- .++-+++ -+++.. +|| .+||+.+.+.+|-..--.--|.||.+.
T Consensus 50 ~Lt~~~a~~IY~~~YW~~~~~d~l~~~~a~~~fD~aVN~G~--------~~Avk~lQ~~lgl~~DGiiGp~Tl~al 117 (167)
T 2ikb_A 50 AMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGY--------GNAARMLQRAAGVPDDGVIGAVSLKAI 117 (167)
T ss_dssp GCCHHHHHHHHHHHTTTTTTGGGSCHHHHHHHHHHHHHHCH--------HHHHHHHHHHTTSCCSSCCCHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccccccccCCHHHHHHHHHHhhhCcH--------HHHHHHHHHHcCCCcCCCcCHHHHHHH
Confidence 489999999998443 4443433 222211 333 479999999998544333356666654
Done!