Query 033812
Match_columns 111
No_of_seqs 221 out of 1142
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:34:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 1E-27 2.2E-32 178.1 9.7 75 9-87 1-75 (371)
2 KOG0713 Molecular chaperone (D 99.9 1.5E-26 3.3E-31 168.7 7.9 75 9-87 13-87 (336)
3 PRK14288 chaperone protein Dna 99.9 1.7E-23 3.8E-28 156.9 8.0 70 11-84 2-71 (369)
4 PRK14296 chaperone protein Dna 99.9 4.4E-23 9.5E-28 154.9 7.8 69 11-84 3-71 (372)
5 PRK14279 chaperone protein Dna 99.9 1.1E-22 2.4E-27 153.6 7.5 69 10-82 7-75 (392)
6 KOG0712 Molecular chaperone (D 99.9 1.4E-22 3.1E-27 149.0 7.5 72 10-88 2-73 (337)
7 PRK14286 chaperone protein Dna 99.9 1.7E-22 3.7E-27 151.7 8.0 71 10-84 2-72 (372)
8 PF00226 DnaJ: DnaJ domain; I 99.9 2.5E-22 5.4E-27 116.2 6.3 64 13-79 1-64 (64)
9 PRK14287 chaperone protein Dna 99.9 3.5E-22 7.6E-27 150.0 8.5 69 11-84 3-71 (371)
10 PTZ00037 DnaJ_C chaperone prot 99.9 4.4E-22 9.6E-27 151.3 7.8 67 10-84 26-92 (421)
11 PRK14282 chaperone protein Dna 99.9 7.3E-22 1.6E-26 148.2 8.3 71 11-84 3-73 (369)
12 PRK14276 chaperone protein Dna 99.9 1E-21 2.2E-26 147.8 7.9 69 11-84 3-71 (380)
13 PRK14285 chaperone protein Dna 99.9 1.1E-21 2.5E-26 146.9 7.9 69 12-84 3-71 (365)
14 PRK14294 chaperone protein Dna 99.9 1.3E-21 2.9E-26 146.6 8.2 71 10-84 2-72 (366)
15 PRK14299 chaperone protein Dna 99.9 1.6E-21 3.4E-26 142.3 8.0 69 11-84 3-71 (291)
16 PRK14301 chaperone protein Dna 99.9 1.5E-21 3.3E-26 146.6 7.6 70 11-84 3-72 (373)
17 PRK14277 chaperone protein Dna 99.9 2.1E-21 4.6E-26 146.4 8.3 70 11-84 4-73 (386)
18 PRK14283 chaperone protein Dna 99.9 2E-21 4.4E-26 146.1 7.9 69 10-83 3-71 (378)
19 PRK14297 chaperone protein Dna 99.8 1.7E-21 3.8E-26 146.6 7.5 70 11-84 3-72 (380)
20 PRK14291 chaperone protein Dna 99.8 2.2E-21 4.7E-26 146.2 7.7 69 11-84 2-70 (382)
21 PRK14295 chaperone protein Dna 99.8 2.3E-21 5E-26 146.3 7.7 66 11-80 8-73 (389)
22 PRK14280 chaperone protein Dna 99.8 2.8E-21 6.1E-26 145.3 8.1 69 11-84 3-71 (376)
23 KOG0716 Molecular chaperone (D 99.8 2.2E-21 4.7E-26 138.1 7.0 68 11-82 30-97 (279)
24 PRK14298 chaperone protein Dna 99.8 2.3E-21 5E-26 145.8 7.6 69 11-84 4-72 (377)
25 PRK10767 chaperone protein Dna 99.8 4.1E-21 9E-26 144.1 8.2 70 11-84 3-72 (371)
26 PRK14284 chaperone protein Dna 99.8 3.8E-21 8.3E-26 145.2 7.9 69 12-84 1-69 (391)
27 PRK14278 chaperone protein Dna 99.8 3.4E-21 7.3E-26 145.0 7.2 67 12-83 3-69 (378)
28 PTZ00341 Ring-infected erythro 99.8 1.3E-20 2.8E-25 152.1 10.1 82 9-95 570-651 (1136)
29 PRK14281 chaperone protein Dna 99.8 5.9E-21 1.3E-25 144.4 7.5 69 12-84 3-71 (397)
30 KOG0718 Molecular chaperone (D 99.8 9E-21 1.9E-25 143.2 7.0 78 9-87 6-83 (546)
31 KOG0691 Molecular chaperone (D 99.8 1.1E-20 2.4E-25 137.5 7.3 75 11-89 4-78 (296)
32 KOG0715 Molecular chaperone (D 99.8 1.7E-20 3.6E-25 136.7 7.3 72 9-85 40-111 (288)
33 PRK14289 chaperone protein Dna 99.8 2E-20 4.4E-25 141.0 7.9 70 11-84 4-73 (386)
34 PRK14290 chaperone protein Dna 99.8 2.8E-20 6E-25 139.4 7.6 70 12-84 3-72 (365)
35 KOG0717 Molecular chaperone (D 99.8 3.6E-20 7.9E-25 139.7 8.1 70 9-81 5-74 (508)
36 TIGR02349 DnaJ_bact chaperone 99.8 3.1E-20 6.8E-25 138.6 7.5 67 13-84 1-67 (354)
37 PRK10266 curved DNA-binding pr 99.8 3.7E-20 8.1E-25 135.9 7.3 67 11-82 3-69 (306)
38 PRK14300 chaperone protein Dna 99.8 3.6E-20 7.9E-25 139.1 7.0 67 12-83 3-69 (372)
39 PRK14292 chaperone protein Dna 99.8 4.6E-20 1E-24 138.5 7.4 68 12-84 2-69 (371)
40 KOG0719 Molecular chaperone (D 99.8 5.5E-20 1.2E-24 128.7 7.2 73 11-85 13-85 (264)
41 PRK14293 chaperone protein Dna 99.8 7.1E-20 1.5E-24 137.6 7.4 68 12-84 3-70 (374)
42 smart00271 DnaJ DnaJ molecular 99.8 2.1E-19 4.5E-24 102.5 7.1 59 12-73 1-59 (60)
43 cd06257 DnaJ DnaJ domain or J- 99.8 6.5E-19 1.4E-23 98.7 7.0 55 13-71 1-55 (55)
44 PRK05014 hscB co-chaperone Hsc 99.8 3.1E-18 6.7E-23 116.6 8.9 75 12-86 1-78 (171)
45 PRK01356 hscB co-chaperone Hsc 99.8 3.2E-18 6.9E-23 116.0 8.7 74 12-86 2-77 (166)
46 KOG0721 Molecular chaperone (D 99.8 2.2E-18 4.7E-23 119.5 7.2 72 7-82 94-165 (230)
47 PHA03102 Small T antigen; Revi 99.7 2.4E-18 5.1E-23 114.9 6.3 69 12-88 5-75 (153)
48 TIGR03835 termin_org_DnaJ term 99.7 7E-18 1.5E-22 134.0 9.3 70 12-86 2-71 (871)
49 PRK00294 hscB co-chaperone Hsc 99.7 1E-17 2.2E-22 114.2 8.6 78 9-86 1-81 (173)
50 PRK03578 hscB co-chaperone Hsc 99.7 2.5E-17 5.3E-22 112.6 9.3 77 10-86 4-83 (176)
51 COG2214 CbpA DnaJ-class molecu 99.7 1.1E-17 2.5E-22 115.1 7.3 70 9-81 3-72 (237)
52 KOG0624 dsRNA-activated protei 99.7 7.9E-17 1.7E-21 119.3 5.1 73 9-82 391-463 (504)
53 KOG0720 Molecular chaperone (D 99.7 1.1E-16 2.3E-21 121.0 5.5 71 10-85 233-303 (490)
54 KOG0722 Molecular chaperone (D 99.6 4E-16 8.6E-21 110.9 3.9 76 6-86 27-102 (329)
55 PTZ00100 DnaJ chaperone protei 99.6 1.4E-15 3E-20 97.2 5.2 60 3-70 56-115 (116)
56 PRK09430 djlA Dna-J like membr 99.6 1.9E-15 4.2E-20 109.2 6.1 63 9-71 197-262 (267)
57 PRK01773 hscB co-chaperone Hsc 99.6 1.4E-14 3.1E-19 98.7 9.0 72 12-83 2-76 (173)
58 KOG0550 Molecular chaperone (D 99.5 9.1E-15 2E-19 109.9 4.8 71 9-82 370-440 (486)
59 COG5407 SEC63 Preprotein trans 99.5 3.7E-14 8E-19 107.6 5.6 73 10-82 96-169 (610)
60 KOG0714 Molecular chaperone (D 99.5 4.7E-14 1E-18 101.0 4.6 70 11-83 2-71 (306)
61 PHA02624 large T antigen; Prov 99.5 6.8E-14 1.5E-18 109.9 5.1 60 11-78 10-71 (647)
62 TIGR00714 hscB Fe-S protein as 99.4 7.7E-13 1.7E-17 89.0 8.5 63 24-86 3-66 (157)
63 KOG1150 Predicted molecular ch 99.4 5.1E-13 1.1E-17 92.2 6.2 70 6-78 47-116 (250)
64 COG5269 ZUO1 Ribosome-associat 99.4 2.3E-12 4.9E-17 92.7 6.6 78 6-85 37-117 (379)
65 KOG0723 Molecular chaperone (D 98.9 4.5E-09 9.8E-14 65.8 5.0 63 2-72 46-108 (112)
66 KOG0568 Molecular chaperone (D 98.8 6.1E-09 1.3E-13 73.8 4.1 60 11-75 46-106 (342)
67 KOG1789 Endocytosis protein RM 98.6 6.1E-08 1.3E-12 80.5 5.7 54 10-70 1279-1336(2235)
68 KOG3192 Mitochondrial J-type c 98.5 3.4E-07 7.3E-12 61.1 5.2 79 9-87 5-86 (168)
69 COG1076 DjlA DnaJ-domain-conta 97.8 3E-05 6.6E-10 52.9 3.7 74 13-86 2-78 (174)
70 KOG0431 Auxilin-like protein a 97.7 5.7E-05 1.2E-09 58.6 5.1 51 19-69 395-448 (453)
71 COG1076 DjlA DnaJ-domain-conta 97.6 4.7E-05 1E-09 52.0 3.2 58 12-69 113-173 (174)
72 PF03656 Pam16: Pam16; InterP 96.7 0.0045 9.7E-08 40.4 4.7 54 13-74 59-112 (127)
73 PF14687 DUF4460: Domain of un 96.0 0.021 4.5E-07 36.5 4.9 52 22-73 4-55 (112)
74 PF11833 DUF3353: Protein of u 94.9 0.066 1.4E-06 37.3 4.8 40 21-72 1-41 (194)
75 PF13446 RPT: A repeated domai 94.7 0.14 2.9E-06 28.9 5.0 28 11-38 4-31 (62)
76 KOG0724 Zuotin and related mol 93.2 0.15 3.2E-06 38.0 4.1 59 23-81 3-61 (335)
77 COG5552 Uncharacterized conser 79.3 11 0.00023 22.4 5.2 32 13-44 4-35 (88)
78 TIGR03759 conj_TIGR03759 integ 75.7 5.4 0.00012 28.0 3.9 38 1-40 26-63 (200)
79 PF07709 SRR: Seven Residue Re 75.0 2.1 4.5E-05 17.0 1.1 13 58-70 2-14 (14)
80 KOG3442 Uncharacterized conser 71.7 7.8 0.00017 25.2 3.6 35 12-46 59-93 (132)
81 PF10041 DUF2277: Uncharacteri 64.8 27 0.00059 20.7 6.2 55 16-71 7-61 (78)
82 cd01388 SOX-TCF_HMG-box SOX-TC 62.0 26 0.00056 19.8 4.3 41 31-80 14-54 (72)
83 cd01390 HMGB-UBF_HMG-box HMGB- 49.4 42 0.00091 18.1 4.3 39 32-79 14-52 (66)
84 PF15178 TOM_sub5: Mitochondri 49.2 37 0.00081 18.2 3.2 24 15-38 2-25 (51)
85 cd00084 HMG-box High Mobility 47.9 44 0.00094 17.9 4.6 41 30-79 12-52 (66)
86 PF12434 Malate_DH: Malate deh 47.1 29 0.00063 16.4 2.3 17 26-42 10-26 (28)
87 COG2879 Uncharacterized small 45.0 60 0.0013 18.6 3.8 29 31-65 26-54 (65)
88 PF08447 PAS_3: PAS fold; Int 44.9 5.9 0.00013 22.7 -0.4 30 11-44 5-35 (91)
89 cd01389 MATA_HMG-box MATA_HMG- 43.5 63 0.0014 18.4 4.4 41 30-79 13-53 (77)
90 KOG0527 HMG-box transcription 41.4 52 0.0011 25.0 4.1 42 30-80 74-115 (331)
91 PRK15321 putative type III sec 40.1 94 0.002 19.5 5.4 36 6-41 10-50 (120)
92 cd01780 PLC_epsilon_RA Ubiquit 39.5 40 0.00087 20.8 2.7 35 10-44 9-43 (93)
93 PF12725 DUF3810: Protein of u 38.4 42 0.00091 25.1 3.2 65 7-72 77-149 (318)
94 COG0089 RplW Ribosomal protein 38.1 29 0.00063 21.4 1.9 22 17-38 25-46 (94)
95 PF00505 HMG_box: HMG (high mo 37.6 69 0.0015 17.4 3.4 37 30-75 12-48 (69)
96 CHL00030 rpl23 ribosomal prote 34.1 38 0.00082 20.8 2.0 21 17-37 23-43 (93)
97 PF10475 DUF2450: Protein of u 33.2 51 0.0011 24.1 2.9 33 27-73 182-214 (291)
98 KOG3960 Myogenic helix-loop-he 33.1 33 0.00072 25.1 1.8 15 56-70 127-141 (284)
99 PF00076 RRM_1: RNA recognitio 32.1 37 0.0008 18.1 1.6 23 17-39 3-25 (70)
100 PRK00810 nifW nitrogenase stab 30.0 84 0.0018 20.1 3.1 65 11-79 18-89 (113)
101 KOG2320 RAS effector RIN1 (con 29.8 56 0.0012 26.9 2.7 26 19-44 396-421 (651)
102 TIGR03636 L23_arch archaeal ri 28.0 57 0.0012 19.3 2.0 21 17-37 18-38 (77)
103 COG2960 Uncharacterized protei 28.0 1.6E+02 0.0035 18.5 4.5 49 32-80 15-63 (103)
104 PRK05738 rplW 50S ribosomal pr 28.0 55 0.0012 19.9 2.0 21 17-37 24-44 (92)
105 PF04949 Transcrip_act: Transc 26.6 1.1E+02 0.0025 20.6 3.4 24 53-76 62-85 (159)
106 PF04967 HTH_10: HTH DNA bindi 26.3 33 0.00071 18.8 0.7 23 15-37 30-52 (53)
107 PF07739 TipAS: TipAS antibiot 25.1 1.7E+02 0.0036 17.7 4.6 49 19-80 51-100 (118)
108 PF03206 NifW: Nitrogen fixati 25.0 93 0.002 19.5 2.7 66 11-79 14-86 (105)
109 PRK10613 hypothetical protein; 24.9 29 0.00063 20.4 0.3 11 25-35 64-74 (74)
110 smart00362 RRM_2 RNA recogniti 24.8 82 0.0018 16.2 2.2 20 17-36 4-23 (72)
111 smart00360 RRM RNA recognition 24.0 90 0.002 15.9 2.3 20 18-37 2-21 (71)
112 PF01388 ARID: ARID/BRIGHT DNA 23.2 1.2E+02 0.0025 17.8 2.8 10 28-37 79-88 (92)
113 PRK14548 50S ribosomal protein 22.8 80 0.0017 19.0 2.0 21 17-37 25-45 (84)
114 smart00398 HMG high mobility g 22.7 1.4E+02 0.003 16.0 4.3 39 31-78 14-52 (70)
115 PF10769 DUF2594: Protein of u 22.1 35 0.00077 20.0 0.3 11 25-35 64-74 (74)
116 PF04282 DUF438: Family of unk 21.9 46 0.001 19.4 0.8 26 18-43 7-32 (71)
117 PF11590 DNAPolymera_Pol: DNA 21.5 1.3E+02 0.0028 15.6 2.3 16 54-69 25-40 (41)
118 PRK10141 DNA-binding transcrip 21.3 1.1E+02 0.0024 19.5 2.5 23 60-82 4-26 (117)
119 PF14606 Lipase_GDSL_3: GDSL-l 21.2 1.5E+02 0.0032 20.4 3.3 56 17-72 64-134 (178)
120 KOG0906 Phosphatidylinositol 3 21.0 2E+02 0.0044 24.3 4.4 58 11-69 623-692 (843)
121 PF03820 Mtc: Tricarboxylate c 20.7 1.1E+02 0.0023 23.0 2.7 55 22-76 46-122 (308)
122 cd00590 RRM RRM (RNA recogniti 20.2 1.2E+02 0.0025 15.7 2.2 20 17-36 4-23 (74)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-27 Score=178.11 Aligned_cols=75 Identities=47% Similarity=0.704 Sum_probs=68.7
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCC
Q 033812 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE 87 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~ 87 (111)
+...|||+||||+++||.+|||+|||+|+++||||+++.++ .|+++|++|++||+||+||++|+.||+++.....
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~----~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDK----EAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 35689999999999999999999999999999999987544 8999999999999999999999999998866554
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.5e-26 Score=168.70 Aligned_cols=75 Identities=41% Similarity=0.713 Sum_probs=70.2
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCC
Q 033812 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE 87 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~ 87 (111)
...+|||+||||+++|+..|||+|||+|++++||||++.+| .|.+.|+.|+.||+||+||.+|+.||..+.+...
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp----~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~ 87 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDP----NANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK 87 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence 35689999999999999999999999999999999999887 8999999999999999999999999998866655
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=1.7e-23 Score=156.87 Aligned_cols=70 Identities=49% Similarity=0.780 Sum_probs=64.0
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
..|||+||||+++||.++||+|||+|+++||||+++.++ .+.++|++|++||+||+||.+|+.||+++..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~----~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK----EAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcc----HHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 379999999999999999999999999999999986443 6889999999999999999999999997654
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=4.4e-23 Score=154.87 Aligned_cols=69 Identities=42% Similarity=0.638 Sum_probs=63.3
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
..|||+||||+++|+.++||+|||+|+++||||+++. + .+.++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~----~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-P----DAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----hHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 5799999999999999999999999999999999753 2 6889999999999999999999999997643
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.1e-22 Score=153.57 Aligned_cols=69 Identities=42% Similarity=0.639 Sum_probs=63.7
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 82 (111)
...|||+||||+++|+.++||+|||+|+++||||+++.++ .+.++|++|++||+||+||.+|+.||+++
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDP----AAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh----HHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 3579999999999999999999999999999999986443 68899999999999999999999999965
No 6
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.4e-22 Score=148.96 Aligned_cols=72 Identities=43% Similarity=0.711 Sum_probs=65.5
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCCC
Q 033812 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE 88 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~~ 88 (111)
....+|+||||+++||.+|||+|||+|+++|||||++ .+.++|++|..||+||+||++|..||+.+.+....
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~-------~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~ 73 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNP-------DAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQG 73 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCc-------cHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcc
Confidence 3568999999999999999999999999999999975 47899999999999999999999999988666543
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=1.7e-22 Score=151.69 Aligned_cols=71 Identities=44% Similarity=0.705 Sum_probs=64.3
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
...|||+||||+++|+.++||+|||+++++||||+++.++ .+.++|++|++||+||+||.+|+.||+++..
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK----ESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch----HHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 3479999999999999999999999999999999976433 6889999999999999999999999997643
No 8
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.87 E-value=2.5e-22 Score=116.20 Aligned_cols=64 Identities=42% Similarity=0.777 Sum_probs=60.0
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHh
Q 033812 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (111)
Q Consensus 13 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd 79 (111)
|||+||||+++++.++||++|+++++.+|||+++... ..+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~---~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE---AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH---HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh---hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987653 468999999999999999999999998
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=3.5e-22 Score=149.96 Aligned_cols=69 Identities=39% Similarity=0.731 Sum_probs=63.1
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
..|||+||||+++|+.++||+|||+++++||||+++. + .+.++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~----~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-P----DAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-h----hHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 4799999999999999999999999999999999752 2 6788999999999999999999999997654
No 10
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.86 E-value=4.4e-22 Score=151.29 Aligned_cols=67 Identities=40% Similarity=0.677 Sum_probs=61.1
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
...|||+||||+++||.++||+|||+|+++||||+++ ..++|++|++||+||+||.+|+.||.++..
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~--------~~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG--------DPEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc--------hHHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 4679999999999999999999999999999999963 137999999999999999999999997644
No 11
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=7.3e-22 Score=148.16 Aligned_cols=71 Identities=48% Similarity=0.838 Sum_probs=63.9
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
..|||+||||+++|+.++||+|||+|+++||||+++.+ ...+.++|++|++||+||+||.+|+.||.+...
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN---RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc---hhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 57999999999999999999999999999999997543 226889999999999999999999999997643
No 12
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1e-21 Score=147.82 Aligned_cols=69 Identities=43% Similarity=0.714 Sum_probs=63.2
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
..|||+||||+++||.++||+|||+|+++||||+++. + .+.++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-P----GAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----CHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 4799999999999999999999999999999999763 2 5788999999999999999999999997643
No 13
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1.1e-21 Score=146.91 Aligned_cols=69 Identities=46% Similarity=0.732 Sum_probs=63.4
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
.|||+||||+++||.++||+|||+|+++||||+++.++ .+.++|++|++||+||+||.+|..||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNK----EAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH----HHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 69999999999999999999999999999999976443 6888999999999999999999999997643
No 14
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1.3e-21 Score=146.57 Aligned_cols=71 Identities=46% Similarity=0.734 Sum_probs=64.6
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
...|||+||||+++|+.++||+|||+|+++||||+++.++ .+.+.|++|++||+||+||.+|+.||+++..
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDK----EAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch----HHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 3579999999999999999999999999999999986443 6788999999999999999999999997654
No 15
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.6e-21 Score=142.35 Aligned_cols=69 Identities=48% Similarity=0.758 Sum_probs=63.1
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
..|||+||||+++||.++||+|||++++++|||+++. + .+.++|++|++||++|+||.+|+.||..+..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~----~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-P----GAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-h----hHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 4799999999999999999999999999999999752 2 6888999999999999999999999996643
No 16
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.5e-21 Score=146.57 Aligned_cols=70 Identities=46% Similarity=0.782 Sum_probs=64.0
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
..|||+||||+++|+.++||+|||+++++||||+++.++ .+.++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNP----EAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCCh----HHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 479999999999999999999999999999999986442 6888999999999999999999999997643
No 17
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.1e-21 Score=146.39 Aligned_cols=70 Identities=41% Similarity=0.707 Sum_probs=63.8
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
..|||+||||+++|+.++||+|||+++++||||+++.++ .+.++|++|++||+||+||.+|+.||.++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK----EAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch----HHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 479999999999999999999999999999999986443 6889999999999999999999999996643
No 18
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2e-21 Score=146.13 Aligned_cols=69 Identities=43% Similarity=0.703 Sum_probs=63.4
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 83 (111)
...|||+||||+++|+.+|||+|||+|+++||||+++. + .+.++|++|++||++|+||.+|+.||+++.
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~----~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-E----GAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----cHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 36799999999999999999999999999999999753 2 688999999999999999999999998654
No 19
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.7e-21 Score=146.58 Aligned_cols=70 Identities=46% Similarity=0.735 Sum_probs=64.0
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
..|||+||||+++|+.++||+|||+++++||||+++.++ .+.++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK----EAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 469999999999999999999999999999999986443 6889999999999999999999999997643
No 20
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.2e-21 Score=146.15 Aligned_cols=69 Identities=43% Similarity=0.725 Sum_probs=63.2
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
..|||+||||+++|+.++||+|||+++++||||+++.. .+.++|++|++||+||+||.+|+.||.++..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-----~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP-----EAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----cHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 36999999999999999999999999999999998642 6788999999999999999999999997654
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.3e-21 Score=146.29 Aligned_cols=66 Identities=48% Similarity=0.829 Sum_probs=61.6
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhh
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~ 80 (111)
..|||+||||+++|+.++||+|||+|+++||||+++.++ .+.++|++|++||+||+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDA----KAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch----hHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 469999999999999999999999999999999976443 688999999999999999999999998
No 22
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.8e-21 Score=145.29 Aligned_cols=69 Identities=43% Similarity=0.702 Sum_probs=63.2
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
..|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~-----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE-----GADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 47999999999999999999999999999999997532 5889999999999999999999999997643
No 23
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.2e-21 Score=138.14 Aligned_cols=68 Identities=46% Similarity=0.814 Sum_probs=64.6
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 82 (111)
..++|+||||+++|+.++||++||++++++|||+++.+| ++.++|++||+||++|+||.+|..||.++
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P----~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g 97 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNP----EATDKFKEINTAYAILSDPTKRNVYDEYG 97 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCc----hhHHHHHHHHHHHHHhcChhhhhhHHHhh
Confidence 568999999999999999999999999999999998876 78999999999999999999999999975
No 24
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.3e-21 Score=145.81 Aligned_cols=69 Identities=51% Similarity=0.816 Sum_probs=63.1
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
..|||+||||+++|+.++||+|||+++++||||+++.. .+.++|++|++||++|+||.+|+.||+++..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP-----DAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh-----hHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 46999999999999999999999999999999997532 6789999999999999999999999997644
No 25
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.1e-21 Score=144.14 Aligned_cols=70 Identities=47% Similarity=0.779 Sum_probs=63.8
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
..|||+||||+++|+.++||+|||+++++||||+++.++ .+.+.|++|++||++|+||.+|+.||.+...
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDK----EAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcH----HHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 579999999999999999999999999999999986443 5889999999999999999999999987643
No 26
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.8e-21 Score=145.18 Aligned_cols=69 Identities=49% Similarity=0.811 Sum_probs=63.1
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
.|||+||||+++|+.++||+|||+++++||||+++.++ .+.++|++|++||++|+||.+|+.||+++..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDA----EAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch----HHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 48999999999999999999999999999999986543 6889999999999999999999999987643
No 27
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.4e-21 Score=144.95 Aligned_cols=67 Identities=43% Similarity=0.693 Sum_probs=62.2
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 83 (111)
.|||+||||+++|+.++||+|||+++++||||+++. ..+.++|++|++||+||+||.+|+.||.++.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-----~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-----EEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-----HHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 699999999999999999999999999999999762 2688999999999999999999999998764
No 28
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.84 E-value=1.3e-20 Score=152.13 Aligned_cols=82 Identities=32% Similarity=0.553 Sum_probs=70.8
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCCC
Q 033812 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE 88 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~~ 88 (111)
....+||+||||+++|+..+||+|||+++++||||+++.+ .+.++|+.|++||+||+||.+|+.||.++......
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-----~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-----EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 3467999999999999999999999999999999998643 57789999999999999999999999988766555
Q ss_pred CCCCCch
Q 033812 89 EDEVPPK 95 (111)
Q Consensus 89 ~~~~~~~ 95 (111)
....+|.
T Consensus 645 ~~~iDP~ 651 (1136)
T PTZ00341 645 VNFIHPS 651 (1136)
T ss_pred CCccCHH
Confidence 4444443
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.9e-21 Score=144.43 Aligned_cols=69 Identities=42% Similarity=0.751 Sum_probs=63.3
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
.|||+||||+++|+.++||+|||+++++||||+++.++ .+.+.|++|++||++|+||.+|+.||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~ 71 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNK----EAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA 71 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch----HHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence 69999999999999999999999999999999986442 6789999999999999999999999997653
No 30
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=9e-21 Score=143.18 Aligned_cols=78 Identities=38% Similarity=0.622 Sum_probs=71.1
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCC
Q 033812 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE 87 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~ 87 (111)
..+.+||.+|+|+++||.+|||+|||++++.|||||+. ++..++.|++.|+.|..||+||+||.+|..||..+.....
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~-dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHT-DPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccC-ChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 34569999999999999999999999999999999985 4566779999999999999999999999999998877765
No 31
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.1e-20 Score=137.46 Aligned_cols=75 Identities=40% Similarity=0.709 Sum_probs=69.5
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCCCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEE 89 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~~~ 89 (111)
..|||+||||+..++..+|++|||..++++||||++.+| .+.+.|+.+.+||+||+|+..|..||..+.......
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP----~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~ 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDP----QAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh----HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence 679999999999999999999999999999999999888 699999999999999999999999999886665443
No 32
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.7e-20 Score=136.73 Aligned_cols=72 Identities=43% Similarity=0.729 Sum_probs=65.8
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~ 85 (111)
....|||+||||+++|+..|||+||++|+++||||.+... .+.++|++|.+||++|+|+++|..||..+...
T Consensus 40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-----~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-----EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-----chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 3344999999999999999999999999999999998655 79999999999999999999999999977654
No 33
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2e-20 Score=141.04 Aligned_cols=70 Identities=41% Similarity=0.704 Sum_probs=64.1
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
..|||+||||+++|+.+|||+|||+++++||||+++.++ .+.++|++|++||++|+||.+|+.||.+...
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDK----EAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCh----HHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 579999999999999999999999999999999986543 6889999999999999999999999996543
No 34
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.8e-20 Score=139.45 Aligned_cols=70 Identities=47% Similarity=0.756 Sum_probs=63.3
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
.|||+||||+++|+.++||+|||+|++++|||+++.+ ...+.++|++|++||++|+||.+|+.||..+..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN---KAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---hhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 6999999999999999999999999999999997533 236889999999999999999999999996643
No 35
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.6e-20 Score=139.66 Aligned_cols=70 Identities=41% Similarity=0.719 Sum_probs=63.8
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhc
Q 033812 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 81 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~ 81 (111)
...+.||+||||.++|+..+||++||+|+++||||+++.. -+.+.++|+.|+.||+|||||..|+.||..
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~---ieeat~~F~~i~aAYeVLSdp~eR~wyd~h 74 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDR---IEEATQQFQLIQAAYEVLSDPQERAWYDSH 74 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCcc---HHHHHHHHHHHHHHHHHhcChHhhhhHHHH
Confidence 4567899999999999999999999999999999996543 358999999999999999999999999973
No 36
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.82 E-value=3.1e-20 Score=138.63 Aligned_cols=67 Identities=52% Similarity=0.806 Sum_probs=61.4
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 13 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
|||+||||+++|+.++||+|||+++++||||+++ .+ .+.++|++|++||++|+|+.+|+.||.++..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~----~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DK----EAEEKFKEINEAYEVLSDPEKRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-Cc----cHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence 7999999999999999999999999999999975 22 5788999999999999999999999996644
No 37
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.81 E-value=3.7e-20 Score=135.94 Aligned_cols=67 Identities=42% Similarity=0.769 Sum_probs=61.7
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 82 (111)
..|||+||||++.|+.++||+|||++++++|||+++.. .+.+.|++|++||++|+||.+|+.||...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~-----~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-----DAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 36999999999999999999999999999999996532 68899999999999999999999999854
No 38
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.6e-20 Score=139.13 Aligned_cols=67 Identities=45% Similarity=0.724 Sum_probs=61.7
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 83 (111)
.|||+||||+++||.++||+|||+++++||||+++. + .+.++|++|++||++|+|+.+|+.||.++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~----~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-K----DAEKKFKEINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c----CHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence 699999999999999999999999999999999752 2 578899999999999999999999999654
No 39
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.6e-20 Score=138.50 Aligned_cols=68 Identities=49% Similarity=0.790 Sum_probs=62.6
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
.|||+||||+++|+.++||+|||++++++|||+++.. .+.++|++|++||++|+||.+|+.||..+..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~-----~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEK-----GAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh-----hHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 5899999999999999999999999999999998532 6889999999999999999999999997643
No 40
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.5e-20 Score=128.75 Aligned_cols=73 Identities=44% Similarity=0.688 Sum_probs=66.6
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~ 85 (111)
..|+|+||||.++|+..+|++||+++++++|||+++ ......+.+.|+.|++||+||+|.++|+.||..+.-.
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~--eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH--EEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch--hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 349999999999999999999999999999999984 4445689999999999999999999999999977655
No 41
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=7.1e-20 Score=137.63 Aligned_cols=68 Identities=41% Similarity=0.682 Sum_probs=62.3
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
.|||+||||+++|+.++||+|||++++++|||+++.. .+.++|+.|++||++|+||.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP-----GAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 6999999999999999999999999999999997532 5788999999999999999999999986643
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.80 E-value=2.1e-19 Score=102.46 Aligned_cols=59 Identities=49% Similarity=0.896 Sum_probs=53.8
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCch
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~ 73 (111)
.|||+||||+++++.++||++|+++++.+|||+++.. ...+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~---~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD---KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---hHHHHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999999999999998642 3478899999999999999985
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.78 E-value=6.5e-19 Score=98.67 Aligned_cols=55 Identities=53% Similarity=0.911 Sum_probs=51.0
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCC
Q 033812 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71 (111)
Q Consensus 13 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d 71 (111)
|||+||||+++++.++||++|+++++++|||+.+.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~----~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD----PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----HHHHHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999998643 3789999999999999986
No 44
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.76 E-value=3.1e-18 Score=116.61 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=63.7
Q ss_pred cCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCcC-ChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812 12 LSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL 86 (111)
Q Consensus 12 ~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~ 86 (111)
.|||++|||++. ++..+|+++|+++++++|||++...+. .+..+.+.+..|++||++|+||.+|+.|+..+.+..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~ 78 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFD 78 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCCc
Confidence 489999999996 678999999999999999999865432 334577899999999999999999999998766443
No 45
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.76 E-value=3.2e-18 Score=116.04 Aligned_cols=74 Identities=23% Similarity=0.406 Sum_probs=62.7
Q ss_pred cCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812 12 LSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL 86 (111)
Q Consensus 12 ~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~ 86 (111)
.|||++|||++. ++..+|+++|+++++++|||++.. ...+..+.+.+..|++||+||+||.+|+.|...+.+..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~-~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~~ 77 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT-LQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNIN 77 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCCC
Confidence 589999999996 689999999999999999999753 22233455678999999999999999999998776543
No 46
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.2e-18 Score=119.54 Aligned_cols=72 Identities=29% Similarity=0.525 Sum_probs=65.2
Q ss_pred CCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812 7 SNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (111)
Q Consensus 7 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 82 (111)
......|+|+||||+++++..|||+|||+|++++||||++.. +..++.|..|++||+.|+|+..|..|...+
T Consensus 94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~----~~~e~~~~~I~KAY~aLTD~~sreN~ekYG 165 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE----EGDEEFFEAIAKAYQALTDKKSRENWEKYG 165 (230)
T ss_pred HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc----chhHHHHHHHHHHHHHhcchhhHHHHHHhC
Confidence 345678999999999999999999999999999999998654 277888999999999999999999999876
No 47
>PHA03102 Small T antigen; Reviewed
Probab=99.75 E-value=2.4e-18 Score=114.91 Aligned_cols=69 Identities=20% Similarity=0.389 Sum_probs=61.4
Q ss_pred cCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCCC
Q 033812 12 LSYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE 88 (111)
Q Consensus 12 ~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~~ 88 (111)
..+|+||||+++| |.++||+|||++++++|||+++ ..+.|++|++||++|+|+..|..||..+......
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg--------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~ 75 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG--------DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSE 75 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc--------hhHHHHHHHHHHHHHhhHHHhccccccCCccccc
Confidence 4689999999999 9999999999999999999953 3469999999999999999999999987665443
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.74 E-value=7e-18 Score=133.97 Aligned_cols=70 Identities=43% Similarity=0.663 Sum_probs=63.7
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL 86 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~ 86 (111)
.|||+||||+++|+.++||++||++++++|||+++.. .+.++|++|++||++|+||.+|+.||.++....
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~-----eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAP-----DAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-----hHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 5899999999999999999999999999999997642 677899999999999999999999999775544
No 49
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.74 E-value=1e-17 Score=114.17 Aligned_cols=78 Identities=26% Similarity=0.374 Sum_probs=66.2
Q ss_pred CCccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCcC-ChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812 9 GGSLSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~ 85 (111)
++..|||++|||++. .+..+|+++||++++++|||++...+. .+..+.+.+..||+||+||+||.+|+.|+..+.+.
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~ 80 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGH 80 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence 467899999999997 567999999999999999999865432 23457788999999999999999999999877654
Q ss_pred C
Q 033812 86 L 86 (111)
Q Consensus 86 ~ 86 (111)
.
T Consensus 81 ~ 81 (173)
T PRK00294 81 E 81 (173)
T ss_pred C
Confidence 3
No 50
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.73 E-value=2.5e-17 Score=112.61 Aligned_cols=77 Identities=23% Similarity=0.238 Sum_probs=63.9
Q ss_pred CccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCcC-ChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812 10 GSLSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL 86 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~ 86 (111)
...|||+||||++. ++..+|+++|+++++++|||+++..+. .+..+.+.+..||+||++|+||.+|..|...+.+..
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~ 83 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVD 83 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCC
Confidence 45799999999995 578999999999999999999865432 223456678999999999999999999998665543
No 51
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-17 Score=115.08 Aligned_cols=70 Identities=46% Similarity=0.830 Sum_probs=64.3
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhc
Q 033812 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 81 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~ 81 (111)
....+||+||||+++|+..+|+++||++++++|||+++.++. .+.+.|..|++||++|+|+..|..||..
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~---~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK---VAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh---HHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 356799999999999999999999999999999999876642 4889999999999999999999999984
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.66 E-value=7.9e-17 Score=119.29 Aligned_cols=73 Identities=42% Similarity=0.702 Sum_probs=66.6
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 82 (111)
...+|||+||||.++|+..+|.+|||+++.+||||-+. +.+++..++.+|..|..|-+||+||++|+.+|...
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFq-dEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQ-DEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCcccc-CHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 45789999999999999999999999999999999875 45556689999999999999999999999999854
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.1e-16 Score=121.01 Aligned_cols=71 Identities=35% Similarity=0.539 Sum_probs=65.7
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~ 85 (111)
+.+|+|.+|||+++++.++||+.||+++...||||+..+ .|.+.|+.++.||++|+|+.+|..||..+...
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~-----~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke 303 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP-----RAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE 303 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh-----hHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 368999999999999999999999999999999999744 89999999999999999999999999977543
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4e-16 Score=110.91 Aligned_cols=76 Identities=38% Similarity=0.635 Sum_probs=67.8
Q ss_pred CCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812 6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (111)
Q Consensus 6 ~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~ 85 (111)
|.-++..|.|+||||.++++..+|.+|||+|++++|||++... ...+.|..|..||++|.|...|..||-.+..+
T Consensus 27 gLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~-----e~k~~F~~iAtayeilkd~e~rt~ydyaldhp 101 (329)
T KOG0722|consen 27 GLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP-----ESKKLFVKIATAYEILKDNETRTQYDYALDHP 101 (329)
T ss_pred hhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc-----hhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence 4456788999999999999999999999999999999998755 45589999999999999999999999877654
Q ss_pred C
Q 033812 86 L 86 (111)
Q Consensus 86 ~ 86 (111)
.
T Consensus 102 d 102 (329)
T KOG0722|consen 102 D 102 (329)
T ss_pred h
Confidence 3
No 55
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.60 E-value=1.4e-15 Score=97.18 Aligned_cols=60 Identities=28% Similarity=0.324 Sum_probs=52.5
Q ss_pred CCCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhC
Q 033812 3 GGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLS 70 (111)
Q Consensus 3 ~~~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~ 70 (111)
+|....+...++|+||||+++++.++||++||++++++|||+.+ ..+.|++|++||++|.
T Consensus 56 ~~f~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG--------s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 56 KGFENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG--------STYIASKVNEAKDLLL 115 (116)
T ss_pred ccccCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--------CHHHHHHHHHHHHHHh
Confidence 35566777889999999999999999999999999999999842 3467889999999985
No 56
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.59 E-value=1.9e-15 Score=109.23 Aligned_cols=63 Identities=30% Similarity=0.478 Sum_probs=55.1
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CcCChHHHHHHHHHHHHHHHHhCC
Q 033812 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAK---NPGVAGEAKCRFQQIQEAYSVLSD 71 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~~~~~f~~i~~Ay~vL~d 71 (111)
....++|+||||++++|.++||++||+++++||||++.. ++...+.+.++|++|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 455799999999999999999999999999999999743 334445789999999999999985
No 57
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.58 E-value=1.4e-14 Score=98.72 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=62.9
Q ss_pred cCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCC-cCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812 12 LSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKN-PGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (111)
Q Consensus 12 ~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 83 (111)
.|||++|||++. .+...++++|+.+.+.+|||++... +..+..+.+....||+||.+|+||.+|+.|-..+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 589999999996 7899999999999999999998654 33334567788899999999999999999998776
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=9.1e-15 Score=109.92 Aligned_cols=71 Identities=42% Similarity=0.734 Sum_probs=65.1
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 82 (111)
....|||.|||+.+.++..+||++||++++.+|||++..+ +.+++..|+++-+||.+|+||.+|..||...
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags---q~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS---QKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch---hHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 3568999999999999999999999999999999997655 4589999999999999999999999999844
No 59
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.49 E-value=3.7e-14 Score=107.55 Aligned_cols=73 Identities=33% Similarity=0.560 Sum_probs=66.8
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAK-NPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 82 (111)
+..|+|||||++.+++..+||++||+|+.++||||.+. .+..++..++.+.+|++||..|.|...|..|-..+
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG 169 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG 169 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 45799999999999999999999999999999999865 34667789999999999999999999999999875
No 60
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.7e-14 Score=101.05 Aligned_cols=70 Identities=47% Similarity=0.750 Sum_probs=62.1
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 83 (111)
..|+|.||||.+.|+..+|++||+++++++|||+++.+ ...+..+|++|.+||++|+|+.+|..||....
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~---~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP---KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc---hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46899999999999999999999999999999996543 23455589999999999999999999999875
No 61
>PHA02624 large T antigen; Provisional
Probab=99.46 E-value=6.8e-14 Score=109.94 Aligned_cols=60 Identities=22% Similarity=0.417 Sum_probs=55.6
Q ss_pred ccCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHH
Q 033812 11 SLSYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY 78 (111)
Q Consensus 11 ~~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Y 78 (111)
..++|++|||+++| +.++||+|||++++++|||+. +..+.|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg--------Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG--------GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC--------CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 999999999999999999994 2357899999999999999999999
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.44 E-value=7.7e-13 Score=89.03 Aligned_cols=63 Identities=22% Similarity=0.254 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCc-CChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812 24 ASFSDIRSAYHKLAMKWHPDRSAKNP-GVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL 86 (111)
Q Consensus 24 as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~ 86 (111)
.+..+|+++|+++++++|||++...+ ..+..+.+.+..|++||++|+||.+|+.|...+.+..
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~~ 66 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGID 66 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCC
Confidence 46789999999999999999975532 2334577899999999999999999999999876543
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=5.1e-13 Score=92.17 Aligned_cols=70 Identities=29% Similarity=0.497 Sum_probs=62.9
Q ss_pred CCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHH
Q 033812 6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY 78 (111)
Q Consensus 6 ~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Y 78 (111)
||+.-+.|+|+||.|.|..+.++||+.||+++...|||+++.+ ++.|...|-.|.+||..|.|+..|..-
T Consensus 47 gstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd---~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 47 GSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD---AERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred CccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc---HHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 6788899999999999999999999999999999999997655 348999999999999999999865443
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.3e-12 Score=92.73 Aligned_cols=78 Identities=33% Similarity=0.428 Sum_probs=64.9
Q ss_pred CCCCCccCcchhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812 6 GSNGGSLSYYAILGIRK---DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (111)
Q Consensus 6 ~~~~~~~~~Y~iLgv~~---~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 82 (111)
-.+++..|+|.+|||+. .+++.+|.++.++.+.+||||+..... .....+.|+.|++||+||+|+.+|..||.--
T Consensus 37 ~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g--~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 37 FKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG--NKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC--CCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 34677899999999986 688999999999999999999973211 1167789999999999999999999999855
Q ss_pred CCC
Q 033812 83 YDP 85 (111)
Q Consensus 83 ~~~ 85 (111)
.+.
T Consensus 115 f~a 117 (379)
T COG5269 115 FDA 117 (379)
T ss_pred ccc
Confidence 443
No 65
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.5e-09 Score=65.77 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=55.7
Q ss_pred CCCCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCc
Q 033812 2 DGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72 (111)
Q Consensus 2 ~~~~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~ 72 (111)
.||..+.+..+.---||||.++++.+.||.++|+++...|||+.+++ -.-..||+|+++|...
T Consensus 46 ~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--------YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 46 KGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--------YLASKINEAKDLLEGT 108 (112)
T ss_pred hcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--------HHHHHHHHHHHHHhcc
Confidence 58889999999999999999999999999999999999999997543 4455899999999754
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=6.1e-09 Score=73.82 Aligned_cols=60 Identities=33% Similarity=0.638 Sum_probs=51.4
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHH-HhCCchHH
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYS-VLSDENKR 75 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~-vL~d~~~R 75 (111)
-+.+|.+|||..+|+.++++.+|..|++++|||..... ...+.|.+|.+||. ||+....+
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~-----adaa~f~qideafrkvlq~~~~k 106 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEE-----ADAARFIQIDEAFRKVLQEKFAK 106 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCcc-----ccHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999985433 56789999999999 88755433
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6.1e-08 Score=80.51 Aligned_cols=54 Identities=33% Similarity=0.522 Sum_probs=45.9
Q ss_pred CccCcchhcCCCC----CCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhC
Q 033812 10 GSLSYYAILGIRK----DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLS 70 (111)
Q Consensus 10 ~~~~~Y~iLgv~~----~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~ 70 (111)
..-+-|+||.|+- ....+.||++|++++.+|||||++ +-.+.|..+++||+.|+
T Consensus 1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP-------EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP-------EGREMFERVNKAYELLS 1336 (2235)
T ss_pred chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc-------hHHHHHHHHHHHHHHHH
Confidence 3446799999975 345588999999999999999975 56789999999999998
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.4e-07 Score=61.12 Aligned_cols=79 Identities=23% Similarity=0.421 Sum_probs=61.5
Q ss_pred CCccCcchhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCC-cCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812 9 GGSLSYYAILGIRK--DASFSDIRSAYHKLAMKWHPDRSAKN-PGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~--~as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~ 85 (111)
....+||.++|... ...++.++.-|....++.|||+.... ......+.+....+++||.+|.||.+|+.|-..+.+.
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~ 84 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKGQ 84 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 34578999998755 45677778799999999999985432 2222367888999999999999999999999876554
Q ss_pred CC
Q 033812 86 LE 87 (111)
Q Consensus 86 ~~ 87 (111)
..
T Consensus 85 e~ 86 (168)
T KOG3192|consen 85 EQ 86 (168)
T ss_pred CC
Confidence 33
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=3e-05 Score=52.91 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=58.6
Q ss_pred CcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCcCCh-HHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812 13 SYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPGVA-GEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL 86 (111)
Q Consensus 13 ~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~-~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~ 86 (111)
+++..+|+++.+ ..+.++..|+.+.+.+|||+....+... ..+.+.+..++.||.+|.+|..|..|-..+.++.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~ 78 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGL 78 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccc
Confidence 456667777655 4466999999999999999987654322 2467789999999999999999999998777444
No 70
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.73 E-value=5.7e-05 Score=58.61 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCCh---HHHHHHHHHHHHHHHHh
Q 033812 19 GIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVA---GEAKCRFQQIQEAYSVL 69 (111)
Q Consensus 19 gv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~---~~~~~~f~~i~~Ay~vL 69 (111)
++..-.+.++||++||+.++..||||..+.+... -.+.+.|-.+++||+..
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 3445578999999999999999999987643222 24566666777777644
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=4.7e-05 Score=51.97 Aligned_cols=58 Identities=33% Similarity=0.473 Sum_probs=48.8
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CcCChHHHHHHHHHHHHHHHHh
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAK---NPGVAGEAKCRFQQIQEAYSVL 69 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~~~~~f~~i~~Ay~vL 69 (111)
.+.|.+||+...+...+|+++|+++...+|||+... ....-..+.+.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 688999999999999999999999999999998533 2333357888899999999754
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.67 E-value=0.0045 Score=40.35 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=38.5
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchH
Q 033812 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 74 (111)
Q Consensus 13 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~ 74 (111)
.-..||||++..+.++|.+.|.+|....+|++.+ ..-.-..|..|.+.|....+
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG--------SfYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGG--------SFYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCC--------CHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999853 33445578888888875543
No 73
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=95.99 E-value=0.021 Score=36.45 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCch
Q 033812 22 KDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73 (111)
Q Consensus 22 ~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~ 73 (111)
+..+..+++.+-|..-++.|||.+...|..++.-++-++.++.-.+.|..+.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 3456788999999999999999998888877777888889988888888765
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=94.89 E-value=0.066 Score=37.30 Aligned_cols=40 Identities=30% Similarity=0.494 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHH-hCCc
Q 033812 21 RKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSV-LSDE 72 (111)
Q Consensus 21 ~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~v-L~d~ 72 (111)
+++|+.+||.+|+.++..+|--|. +.-..|..||+. |++.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~------------~~~~~IEaAYD~ILM~r 41 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDE------------KSREAIEAAYDAILMER 41 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCH------------HHHHHHHHHHHHHHHHH
Confidence 478999999999999999984442 445679999994 4443
No 75
>PF13446 RPT: A repeated domain in UCH-protein
Probab=94.66 E-value=0.14 Score=28.90 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=25.3
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHH
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAM 38 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~ 38 (111)
-.+-|+.|||++..+.+.|-.+|+....
T Consensus 4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 4 VEEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999999999988
No 76
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=0.15 Score=37.96 Aligned_cols=59 Identities=27% Similarity=0.401 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhc
Q 033812 23 DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 81 (111)
Q Consensus 23 ~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~ 81 (111)
.++..+|+.+|+..++..||++............+.+++|.+||.+|.+...|...|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 35778899999999999999986320111125677899999999999997666566653
No 77
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=79.26 E-value=11 Score=22.41 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=26.3
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 033812 13 SYYAILGIRKDASFSDIRSAYHKLAMKWHPDR 44 (111)
Q Consensus 13 ~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk 44 (111)
|--+++|++|.++..||+.+-+..+++..--.
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT 35 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTT 35 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCCC
Confidence 44578899999999999999988888875444
No 78
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=75.72 E-value=5.4 Score=28.01 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=30.1
Q ss_pred CCCCCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHh
Q 033812 1 MDGGGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKW 40 (111)
Q Consensus 1 ~~~~~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~ 40 (111)
|+|..|.-+...||-.+|||+...+.+ |+.|-.+..+.
T Consensus 26 mqG~rG~~SPgLdPLtaLGIeArsd~E--RrryAEl~vk~ 63 (200)
T TIGR03759 26 MQGPRGVYSPGLDPLTALGIEARSDEE--RRRYAELWVKQ 63 (200)
T ss_pred hcCCccCcCCCCChhhhhccccCCHHH--HHHHHHHHHHH
Confidence 678788777889999999998765555 88888877654
No 79
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=75.02 E-value=2.1 Score=16.96 Aligned_cols=13 Identities=38% Similarity=0.859 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhC
Q 033812 58 RFQQIQEAYSVLS 70 (111)
Q Consensus 58 ~f~~i~~Ay~vL~ 70 (111)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3667888887764
No 80
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.71 E-value=7.8 Score=25.24 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=29.3
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSA 46 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~ 46 (111)
..--.||+|++..+.++|.+.|..|.....+.+.+
T Consensus 59 qEa~qILnV~~~ln~eei~k~yehLFevNdkskGG 93 (132)
T KOG3442|consen 59 QEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGG 93 (132)
T ss_pred HHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCc
Confidence 34457999999999999999999999998666643
No 81
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=64.76 E-value=27 Score=20.73 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=34.9
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCC
Q 033812 16 AILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71 (111)
Q Consensus 16 ~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d 71 (111)
.+.|+.|.++.+||..|-...+++..--..+.. ...+.-......|..|-..|.+
T Consensus 7 ~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~-an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 7 TLRNFEPPATDEEIRAAALQYVRKVSGFRKPSA-ANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHccCCCcch-hhHHHHHHHHHHHHHHHHHHHH
Confidence 466889999999999999999999865443321 1111223334456666555544
No 82
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=62.03 E-value=26 Score=19.84 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhh
Q 033812 31 SAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (111)
Q Consensus 31 ~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~ 80 (111)
+..+...+.-||+. ...+..+.|.+.|..|++..+..-++.
T Consensus 14 ~~~r~~~~~~~p~~---------~~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLK---------ENRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44566667778985 355778889999999998776554443
No 83
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=49.41 E-value=42 Score=18.12 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHh
Q 033812 32 AYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (111)
Q Consensus 32 ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd 79 (111)
..+...+.-||+. ...+..+.|.+.|..|++..+....+
T Consensus 14 ~~r~~~~~~~p~~---------~~~~i~~~~~~~W~~ls~~eK~~y~~ 52 (66)
T cd01390 14 EQRPKLKKENPDA---------SVTEVTKILGEKWKELSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHCcCC---------CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455566678884 46678889999999999765544433
No 84
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=49.21 E-value=37 Score=18.23 Aligned_cols=24 Identities=8% Similarity=0.248 Sum_probs=19.5
Q ss_pred chhcCCCCCCCHHHHHHHHHHHHH
Q 033812 15 YAILGIRKDASFSDIRSAYHKLAM 38 (111)
Q Consensus 15 Y~iLgv~~~as~~~Ik~ayr~l~~ 38 (111)
|.+=|+.|..+++|.|+.-|+-+.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 456789999999999998877554
No 85
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=47.95 E-value=44 Score=17.88 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHh
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd 79 (111)
.+.++...+.-||+. ...+....+.+.|..|++..+..-.+
T Consensus 12 ~~~~~~~~~~~~~~~---------~~~~i~~~~~~~W~~l~~~~k~~y~~ 52 (66)
T cd00084 12 SQEHRAEVKAENPGL---------SVGEISKILGEMWKSLSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHHHCcCC---------CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 455667777788884 45678889999999999765544443
No 86
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=47.13 E-value=29 Score=16.42 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhCC
Q 033812 26 FSDIRSAYHKLAMKWHP 42 (111)
Q Consensus 26 ~~~Ik~ayr~l~~~~HP 42 (111)
.++.|.+-|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47788999999999983
No 87
>COG2879 Uncharacterized small protein [Function unknown]
Probab=44.97 E-value=60 Score=18.59 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHH
Q 033812 31 SAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEA 65 (111)
Q Consensus 31 ~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~A 65 (111)
..|-+-+++.|||+.+- .-.+-|++-++|
T Consensus 26 dnYVehmr~~hPd~p~m------T~~EFfrec~da 54 (65)
T COG2879 26 DNYVEHMRKKHPDKPPM------TYEEFFRECQDA 54 (65)
T ss_pred HHHHHHHHHhCcCCCcc------cHHHHHHHHHHh
Confidence 35677788999998542 344555554443
No 88
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=44.92 E-value=5.9 Score=22.73 Aligned_cols=30 Identities=27% Similarity=0.606 Sum_probs=20.3
Q ss_pred ccCcchhcCCCCCCCHHHH-HHHHHHHHHHhCCCC
Q 033812 11 SLSYYAILGIRKDASFSDI-RSAYHKLAMKWHPDR 44 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~I-k~ayr~l~~~~HPDk 44 (111)
..+++++||+++ +++ ......+....|||=
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 356889999955 556 556677888999994
No 89
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=43.54 E-value=63 Score=18.43 Aligned_cols=41 Identities=17% Similarity=0.043 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHh
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd 79 (111)
.+.++..++.-||+. ...+..+.|.+.|..|++..+..-.+
T Consensus 13 ~~~~r~~~~~~~p~~---------~~~eisk~~g~~Wk~ls~eeK~~y~~ 53 (77)
T cd01389 13 RQDKHAQLKTENPGL---------TNNEISRIIGRMWRSESPEVKAYYKE 53 (77)
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 455677778888986 35577788999999999765544333
No 90
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=41.42 E-value=52 Score=24.97 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhh
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~ 80 (111)
.+..|+.+.+-.||.+ -.+.-++|-+-|+.|++.++|-.+|.
T Consensus 74 Sq~~RRkma~qnP~mH---------NSEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 74 SQGQRRKLAKQNPKMH---------NSEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred hHHHHHHHHHhCcchh---------hHHHHHHHHHHHhhcCHhhhccHHHH
Confidence 3455666666678873 45788999999999999999988886
No 91
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=40.11 E-value=94 Score=19.49 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=29.0
Q ss_pred CCCCCccCcch-----hcCCCCCCCHHHHHHHHHHHHHHhC
Q 033812 6 GSNGGSLSYYA-----ILGIRKDASFSDIRSAYHKLAMKWH 41 (111)
Q Consensus 6 ~~~~~~~~~Y~-----iLgv~~~as~~~Ik~ayr~l~~~~H 41 (111)
-++....|.|+ +|.+++.++.+++|.+-.++...+.
T Consensus 10 lsng~~vdlydAF~Q~l~~LP~la~S~~~KD~I~q~m~~F~ 50 (120)
T PRK15321 10 LSNGGDVDLYDAFYQRLLALPESASSETLKDSIYQEMNAFK 50 (120)
T ss_pred cCCCCcchHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHhC
Confidence 35556667664 7889999999999999999888885
No 92
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=39.51 E-value=40 Score=20.77 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=24.9
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 033812 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDR 44 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk 44 (111)
..-.+|.||-++...|..+|-+.--..+++-+||-
T Consensus 9 s~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~ 43 (93)
T cd01780 9 SPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNP 43 (93)
T ss_pred CCCCCeeEEEccccccHHHHHHHHHHHhccCCCCc
Confidence 34578999999999988775555444455557775
No 93
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=38.37 E-value=42 Score=25.10 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=41.8
Q ss_pred CCCCccCcchhcCCCC-CCCHHHHHHHHHHHHHHh-------CCCCCCCCcCChHHHHHHHHHHHHHHHHhCCc
Q 033812 7 SNGGSLSYYAILGIRK-DASFSDIRSAYHKLAMKW-------HPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72 (111)
Q Consensus 7 ~~~~~~~~Y~iLgv~~-~as~~~Ik~ayr~l~~~~-------HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~ 72 (111)
-+....++++-||++. ..+.+|+++--+.++.+. ++|..+.- .......+.++.+.+||+.|.+.
T Consensus 77 lNY~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~-~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 77 LNYYRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVV-DIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred hhcCCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccc-cCCCCHHHHHHHHHHHHHHHHHh
Confidence 3445677889999988 789988877776665543 23321110 00013467888899999888754
No 94
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=38.14 E-value=29 Score=21.44 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=18.4
Q ss_pred hcCCCCCCCHHHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKLAM 38 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l~~ 38 (111)
++-|++.|+..+||+|...+--
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF~ 46 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELFG 46 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHhC
Confidence 4678999999999999888754
No 95
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=37.65 E-value=69 Score=17.42 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKR 75 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R 75 (111)
.+..+...+.-||+. ...+..+.|.+.|.-|++..+.
T Consensus 12 ~~~~~~~~k~~~p~~---------~~~~i~~~~~~~W~~l~~~eK~ 48 (69)
T PF00505_consen 12 CKEKRAKLKEENPDL---------SNKEISKILAQMWKNLSEEEKA 48 (69)
T ss_dssp HHHHHHHHHHHSTTS---------THHHHHHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHhccc---------ccccchhhHHHHHhcCCHHHHH
Confidence 345566667778987 3667788899999998755443
No 96
>CHL00030 rpl23 ribosomal protein L23
Probab=34.06 E-value=38 Score=20.78 Aligned_cols=21 Identities=5% Similarity=0.132 Sum_probs=17.8
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKLA 37 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l~ 37 (111)
++-|++.|+..|||+|...+-
T Consensus 23 ~F~V~~~anK~eIK~avE~lf 43 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELFF 43 (93)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 456899999999999998774
No 97
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=33.20 E-value=51 Score=24.10 Aligned_cols=33 Identities=27% Similarity=0.639 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCch
Q 033812 27 SDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 73 (111)
Q Consensus 27 ~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~ 73 (111)
+.+...+.+++..+.|+ .|..|.+||..|++..
T Consensus 182 ~~ld~~l~~~~~~Fd~~--------------~Y~~v~~AY~lLgk~~ 214 (291)
T PF10475_consen 182 EQLDSDLSKVCQDFDPD--------------KYSKVQEAYQLLGKTQ 214 (291)
T ss_pred HHHHHHHHHHHHhCCHH--------------HHHHHHHHHHHHhhhH
Confidence 44666666666666555 4778999999999653
No 98
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=33.09 E-value=33 Score=25.13 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhC
Q 033812 56 KCRFQQIQEAYSVLS 70 (111)
Q Consensus 56 ~~~f~~i~~Ay~vL~ 70 (111)
..+.+.||+|+++|+
T Consensus 127 RRRLkKVNEAFE~LK 141 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLK 141 (284)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346889999999984
No 99
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=32.14 E-value=37 Score=18.12 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=18.0
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKLAMK 39 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l~~~ 39 (111)
|=||+++.+.++|++.|......
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTSTE
T ss_pred EcCCCCcCCHHHHHHHHHHhhhc
Confidence 34789999999999998775443
No 100
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=30.02 E-value=84 Score=20.05 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=36.9
Q ss_pred ccCcchhcCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHH--hCCchHHHHHh
Q 033812 11 SLSYYAILGIRKDA-----SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSV--LSDENKRSMYD 79 (111)
Q Consensus 11 ~~~~Y~iLgv~~~a-----s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~v--L~d~~~R~~Yd 79 (111)
-.+|++.|||+-+. ..--|-+.|......-. ....+ ..+.....-..+.+||+. =|+|..-+.+-
T Consensus 18 AEdff~ff~V~YDp~vvnV~RLHILKrF~~yL~~~~---~~~~~-e~~~~~~yr~aL~~AY~dF~~Stp~~ekvFK 89 (113)
T PRK00810 18 AEEFFQLLGVPYDPKVVNVARLHILKRMGQYLAQED---FAGLP-EAEARARCRAVLERAYADFVASSPLDQRVFK 89 (113)
T ss_pred HHHHHHHhCCCCCHHHHHHhHHHHHHHHHHHHHhcc---cCCCC-HHHHHHHHHHHHHHHHHHHccCCHhHHHHHH
Confidence 35788999997643 44557777777665433 11111 111234445578889984 45665555554
No 101
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.76 E-value=56 Score=26.89 Aligned_cols=26 Identities=8% Similarity=0.420 Sum_probs=21.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCC
Q 033812 19 GIRKDASFSDIRSAYHKLAMKWHPDR 44 (111)
Q Consensus 19 gv~~~as~~~Ik~ayr~l~~~~HPDk 44 (111)
-++..+..++||.++.++.+.|||.|
T Consensus 396 ~~Ps~~~mEqvk~k~~~m~r~YSP~k 421 (651)
T KOG2320|consen 396 STPSDVLMEQVKQKFTAMQRRYSPSK 421 (651)
T ss_pred cCCcHHHHHHHHHHHHHHHHhhChHH
Confidence 34556677889999999999999997
No 102
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=28.03 E-value=57 Score=19.25 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=17.6
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKLA 37 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l~ 37 (111)
.+-|++.|+..|||+|...+-
T Consensus 18 ~F~V~~~anK~eIK~avE~lf 38 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKLF 38 (77)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 456889999999999988774
No 103
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.99 E-value=1.6e+02 Score=18.48 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhh
Q 033812 32 AYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (111)
Q Consensus 32 ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~ 80 (111)
.+-..+.+.|-+--+...+.....+..|+.+.++.=.=.|-..|..||.
T Consensus 15 ~~e~~~~ql~e~~a~~~~~~~~evE~~~r~~~q~~lnkLDlVsREEFdv 63 (103)
T COG2960 15 RFEDIAAQLSEDAAGAAQEVRAEVEKAFRAQLQRQLNKLDLVSREEFDV 63 (103)
T ss_pred HHHHHHHHHHHHccccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 3444555555555443445556788888877777766677888888885
No 104
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=27.97 E-value=55 Score=19.87 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=17.5
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKLA 37 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l~ 37 (111)
.+-|++.|+..|||++...+-
T Consensus 24 ~F~V~~~a~K~eIK~aie~lf 44 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKLF 44 (92)
T ss_pred EEEECCCCCHHHHHHHHHHHc
Confidence 456889999999999988774
No 105
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=26.64 E-value=1.1e+02 Score=20.56 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHH
Q 033812 53 GEAKCRFQQIQEAYSVLSDENKRS 76 (111)
Q Consensus 53 ~~~~~~f~~i~~Ay~vL~d~~~R~ 76 (111)
+........|.++.++|.||.++.
T Consensus 62 eEetkrLa~ireeLE~l~dP~RkE 85 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADPMRKE 85 (159)
T ss_pred HHHHHHHHHHHHHHHhhccchHHH
Confidence 366778889999999999997754
No 106
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=26.27 E-value=33 Score=18.77 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=13.7
Q ss_pred chhcCCCCCCCHHHHHHHHHHHH
Q 033812 15 YAILGIRKDASFSDIRSAYHKLA 37 (111)
Q Consensus 15 Y~iLgv~~~as~~~Ik~ayr~l~ 37 (111)
=+.|||++.+-..-|+++-++++
T Consensus 30 A~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 30 AEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHh
Confidence 34566666655566666666553
No 107
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=25.12 E-value=1.7e+02 Score=17.72 Aligned_cols=49 Identities=16% Similarity=0.382 Sum_probs=27.0
Q ss_pred CCCCCCC-HHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhh
Q 033812 19 GIRKDAS-FSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (111)
Q Consensus 19 gv~~~as-~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~ 80 (111)
|++|+.. ..+|-+.+..++..+++. ..+.+..|.+.| +.||.-+..|+.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~-----------~~~~~~~l~~~y--~~~~~~~~~~~~ 100 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG-----------DPELLRGLAQMY--VEDPRFAAMYDK 100 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS--------------HHHHHHHHHHT--TSTHHHHHHHG-
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHH--HcCHHHHhhccc
Confidence 4455443 344666666666665551 224666777777 778888888874
No 108
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=25.00 E-value=93 Score=19.54 Aligned_cols=66 Identities=9% Similarity=0.142 Sum_probs=40.4
Q ss_pred ccCcchhcCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHh--CCchHHHHHh
Q 033812 11 SLSYYAILGIRKDA-----SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVL--SDENKRSMYD 79 (111)
Q Consensus 11 ~~~~Y~iLgv~~~a-----s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL--~d~~~R~~Yd 79 (111)
-.+|++.|||+-+. ..=-|-+.|.......++.. .....+.....-..+.+||+.. |+|..-+.+-
T Consensus 14 AEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~---~~~e~~~~~~~R~~L~~AY~dFv~S~p~~ekvFk 86 (105)
T PF03206_consen 14 AEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAP---GLSEEEDWAAYRRALERAYQDFVTSTPLEEKVFK 86 (105)
T ss_pred HHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHHHHHHHHHHhcCChhhhHHHH
Confidence 45789999997643 44558888888888876541 1111223344445788899844 5555554443
No 109
>PRK10613 hypothetical protein; Provisional
Probab=24.93 E-value=29 Score=20.35 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=8.4
Q ss_pred CHHHHHHHHHH
Q 033812 25 SFSDIRSAYHK 35 (111)
Q Consensus 25 s~~~Ik~ayr~ 35 (111)
+.++||.+||+
T Consensus 64 Tv~QIK~aYRq 74 (74)
T PRK10613 64 TVKQIKQAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 56789999873
No 110
>smart00362 RRM_2 RNA recognition motif.
Probab=24.81 E-value=82 Score=16.19 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=16.6
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l 36 (111)
|-||++..+.++|++.+...
T Consensus 4 i~~l~~~~~~~~l~~~~~~~ 23 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKF 23 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhc
Confidence 45788999999999988754
No 111
>smart00360 RRM RNA recognition motif.
Probab=23.98 E-value=90 Score=15.91 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=16.2
Q ss_pred cCCCCCCCHHHHHHHHHHHH
Q 033812 18 LGIRKDASFSDIRSAYHKLA 37 (111)
Q Consensus 18 Lgv~~~as~~~Ik~ayr~l~ 37 (111)
-||+...+.++|++.+....
T Consensus 2 ~~l~~~~~~~~l~~~f~~~g 21 (71)
T smart00360 2 GNLPPDVTEEELRELFSKFG 21 (71)
T ss_pred CCCCcccCHHHHHHHHHhhC
Confidence 47788899999999987653
No 112
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=23.24 E-value=1.2e+02 Score=17.84 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 033812 28 DIRSAYHKLA 37 (111)
Q Consensus 28 ~Ik~ayr~l~ 37 (111)
.|++.|.+..
T Consensus 79 ~L~~~Y~~~L 88 (92)
T PF01388_consen 79 QLRQHYEKYL 88 (92)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 4455544443
No 113
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=22.84 E-value=80 Score=18.96 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=17.5
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKLA 37 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l~ 37 (111)
.+-|++.|+..+||+|..++-
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf 45 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELF 45 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 356889999999999988874
No 114
>smart00398 HMG high mobility group.
Probab=22.73 E-value=1.4e+02 Score=15.97 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHH
Q 033812 31 SAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY 78 (111)
Q Consensus 31 ~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Y 78 (111)
...+...+.-||+. ...+..+.|.+.|..|++..+....
T Consensus 14 ~~~r~~~~~~~~~~---------~~~~i~~~~~~~W~~l~~~ek~~y~ 52 (70)
T smart00398 14 QENRAKIKAENPDL---------SNAEISKKLGERWKLLSEEEKAPYE 52 (70)
T ss_pred HHHHHHHHHHCcCC---------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34455556668875 3456777899999999965544433
No 115
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=22.10 E-value=35 Score=19.99 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=8.4
Q ss_pred CHHHHHHHHHH
Q 033812 25 SFSDIRSAYHK 35 (111)
Q Consensus 25 s~~~Ik~ayr~ 35 (111)
+..+||.+||+
T Consensus 64 Ti~QIK~aYRq 74 (74)
T PF10769_consen 64 TIKQIKTAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 56789999873
No 116
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=21.89 E-value=46 Score=19.41 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=19.5
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCC
Q 033812 18 LGIRKDASFSDIRSAYHKLAMKWHPD 43 (111)
Q Consensus 18 Lgv~~~as~~~Ik~ayr~l~~~~HPD 43 (111)
+.|..+.+.++||+.|.+......|-
T Consensus 7 ~~Lh~G~~~e~vk~~F~~~~~~Vs~~ 32 (71)
T PF04282_consen 7 KRLHEGEDPEEVKEEFKKLFSDVSAS 32 (71)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCCHH
Confidence 34667788999999998888765443
No 117
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=21.47 E-value=1.3e+02 Score=15.60 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 033812 54 EAKCRFQQIQEAYSVL 69 (111)
Q Consensus 54 ~~~~~f~~i~~Ay~vL 69 (111)
...+.-++++.|+++|
T Consensus 25 ~eeEt~qkL~~AF~iL 40 (41)
T PF11590_consen 25 EEEETRQKLRRAFDIL 40 (41)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhh
Confidence 4566778888999887
No 118
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=21.33 E-value=1.1e+02 Score=19.48 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCchHHHHHhhcc
Q 033812 60 QQIQEAYSVLSDENKRSMYDAGL 82 (111)
Q Consensus 60 ~~i~~Ay~vL~d~~~R~~Yd~~~ 82 (111)
..+.+.+.+|+||.+++....-.
T Consensus 4 ~~~~~~fkaLadptRl~IL~~L~ 26 (117)
T PRK10141 4 LLPLQLFKILSDETRLGIVLLLR 26 (117)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHH
Confidence 45678899999999999988643
No 119
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=21.20 E-value=1.5e+02 Score=20.42 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=29.8
Q ss_pred hcCCCCCCCHHHHHHHHH---HHHHHhCCCCC---------CC---CcCChHHHHHHHHHHHHHHHHhCCc
Q 033812 17 ILGIRKDASFSDIRSAYH---KLAMKWHPDRS---------AK---NPGVAGEAKCRFQQIQEAYSVLSDE 72 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr---~l~~~~HPDk~---------~~---~~~~~~~~~~~f~~i~~Ay~vL~d~ 72 (111)
+|.+.++.+.++++++.. +..+.-||++- +. ++.......+.-..+.++++.|...
T Consensus 64 ~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~ 134 (178)
T PF14606_consen 64 VLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKE 134 (178)
T ss_dssp EEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHT
T ss_pred EEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHc
Confidence 344445567777776654 45566799971 00 1112234455566788888888433
No 120
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.02 E-value=2e+02 Score=24.34 Aligned_cols=58 Identities=28% Similarity=0.409 Sum_probs=42.5
Q ss_pred ccCcchhcCCCC---------CCCHHHHHHHHHH---HHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHh
Q 033812 11 SLSYYAILGIRK---------DASFSDIRSAYHK---LAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVL 69 (111)
Q Consensus 11 ~~~~Y~iLgv~~---------~as~~~Ik~ayr~---l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL 69 (111)
..++|.||-..+ +.+...|...|+. ..+++|||.++.. +....+.+.|..--..|.|+
T Consensus 623 kLtpYkVLatg~~eG~vefI~s~~la~Ils~~~~I~~ylke~~p~e~ap~-gi~~~v~dnfVkScaGYsVi 692 (843)
T KOG0906|consen 623 KLTPYKVLATGPKEGFVEFIPSKPLARILSEYHSILMYLKEDRPDENAPF-GISPEVMDNFVKSCAGYSVI 692 (843)
T ss_pred cceeeEEeccCCCcccEEeecCCcHHHHHHHHHHHHHHHHhhCCCcCCCC-CCChhHHHHHHHhhccceee
Confidence 357899987654 5688999999987 5678899986543 22337778888877788764
No 121
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=20.72 E-value=1.1e+02 Score=23.02 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCC----------c------------CChHHHHHHHHHHHHHHHHhCCchHHH
Q 033812 22 KDASFSDIRSAYHKLAMKWHPDRSAKN----------P------------GVAGEAKCRFQQIQEAYSVLSDENKRS 76 (111)
Q Consensus 22 ~~as~~~Ik~ayr~l~~~~HPDk~~~~----------~------------~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 76 (111)
++.+.+++-+|.+..-..+|||....- | -..-.+.--++-+|+.|..+-|-..|.
T Consensus 46 ~~~~~~~lw~Ak~l~~Sa~HPDTge~i~~~fRmsa~vP~n~~i~~~mL~~~~s~~~~ifwQw~NQS~Na~vNy~Nrn 122 (308)
T PF03820_consen 46 PGLTDDELWKAKKLYDSAFHPDTGEKIPLPFRMSAFVPFNMPITGGMLTPYKSTPAVIFWQWVNQSYNAAVNYTNRN 122 (308)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCCCccccccccccccccchHHHHHHhccCcchHHHHHHHHHHhHHHHHHhhhccC
Confidence 345899999999999999999973210 0 000022334567888888877655543
No 122
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=20.15 E-value=1.2e+02 Score=15.67 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.0
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l 36 (111)
|-||++..+.++|++.+...
T Consensus 4 i~~l~~~~~~~~i~~~~~~~ 23 (74)
T cd00590 4 VGNLPPDVTEEDLRELFSKF 23 (74)
T ss_pred EeCCCCccCHHHHHHHHHhc
Confidence 45889999999999999875
Done!