Query 033812
Match_columns 111
No_of_seqs 221 out of 1142
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 10:47:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.9 7.5E-26 2.6E-30 135.3 8.6 76 6-85 1-76 (79)
2 2yua_A Williams-beuren syndrom 99.9 2.7E-25 9.4E-30 138.2 9.1 77 4-84 9-85 (99)
3 2ctp_A DNAJ homolog subfamily 99.9 1.5E-25 5.2E-30 133.7 7.6 75 6-85 1-75 (78)
4 2ej7_A HCG3 gene; HCG3 protein 99.9 3.9E-25 1.3E-29 133.1 9.2 79 4-85 1-79 (82)
5 2ctr_A DNAJ homolog subfamily 99.9 5.9E-25 2E-29 134.0 7.7 73 6-83 1-73 (88)
6 2dmx_A DNAJ homolog subfamily 99.9 1.5E-24 5.2E-29 133.1 8.0 80 4-86 1-80 (92)
7 1wjz_A 1700030A21RIK protein; 99.9 8.1E-25 2.8E-29 134.7 6.4 78 8-85 12-91 (94)
8 1hdj_A Human HSP40, HDJ-1; mol 99.9 2.1E-24 7.3E-29 128.4 7.4 70 11-85 2-71 (77)
9 2cug_A Mkiaa0962 protein; DNAJ 99.9 4.7E-24 1.6E-28 130.0 8.2 73 8-85 13-85 (88)
10 2ctw_A DNAJ homolog subfamily 99.9 1.1E-23 3.6E-28 133.1 8.9 73 7-83 12-84 (109)
11 2och_A Hypothetical protein DN 99.9 6.5E-24 2.2E-28 125.2 6.6 68 9-83 5-72 (73)
12 2ctq_A DNAJ homolog subfamily 99.9 7.8E-24 2.7E-28 134.3 7.3 73 9-85 17-89 (112)
13 2lgw_A DNAJ homolog subfamily 99.9 5.3E-24 1.8E-28 132.5 6.3 73 12-87 2-74 (99)
14 1bq0_A DNAJ, HSP40; chaperone, 99.9 8.6E-24 2.9E-28 132.3 5.0 73 11-87 2-74 (103)
15 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 1.1E-23 3.8E-28 132.9 5.3 77 7-84 10-87 (109)
16 2l6l_A DNAJ homolog subfamily 99.9 3.9E-23 1.4E-27 137.5 7.1 76 7-82 5-82 (155)
17 2o37_A Protein SIS1; HSP40, J- 99.9 3.7E-23 1.3E-27 127.0 5.9 68 10-84 6-73 (92)
18 3apq_A DNAJ homolog subfamily 99.9 5.6E-22 1.9E-26 136.4 8.2 72 12-87 2-73 (210)
19 3hho_A CO-chaperone protein HS 99.9 4.2E-22 1.4E-26 135.0 6.9 78 10-87 2-82 (174)
20 1fpo_A HSC20, chaperone protei 99.9 7.4E-22 2.5E-26 133.4 6.9 75 12-86 1-78 (171)
21 3bvo_A CO-chaperone protein HS 99.8 2.2E-21 7.6E-26 134.6 8.3 76 10-85 41-119 (207)
22 2ys8_A RAB-related GTP-binding 99.8 6.1E-22 2.1E-26 121.1 4.8 62 11-77 26-87 (90)
23 3lz8_A Putative chaperone DNAJ 99.8 6.8E-22 2.3E-26 145.3 0.0 72 6-82 22-93 (329)
24 1iur_A KIAA0730 protein; DNAJ 99.8 1.7E-20 5.7E-25 114.3 3.6 69 4-75 8-76 (88)
25 1gh6_A Large T antigen; tumor 99.8 3.9E-21 1.3E-25 122.2 0.3 66 10-83 6-73 (114)
26 2guz_A Mitochondrial import in 99.8 1.2E-20 4.1E-25 110.7 2.2 66 2-75 4-70 (71)
27 1faf_A Large T antigen; J doma 99.8 2.6E-20 8.9E-25 111.4 2.8 63 9-79 8-72 (79)
28 2pf4_E Small T antigen; PP2A, 99.8 8.9E-21 3.1E-25 128.2 0.7 66 10-83 9-76 (174)
29 1n4c_A Auxilin; four helix bun 99.8 2.5E-20 8.5E-25 126.7 2.8 67 11-78 116-182 (182)
30 3uo3_A J-type CO-chaperone JAC 99.8 4.8E-20 1.7E-24 125.5 3.1 73 6-85 5-85 (181)
31 3ag7_A Putative uncharacterize 99.8 7E-20 2.4E-24 115.1 2.2 63 10-73 39-104 (106)
32 2qwo_B Putative tyrosine-prote 99.8 1.8E-19 6.2E-24 110.4 2.7 59 12-71 33-91 (92)
33 3apo_A DNAJ homolog subfamily 99.7 1.3E-19 4.6E-24 144.1 1.0 76 7-86 16-91 (780)
34 2y4t_A DNAJ homolog subfamily 99.3 7.5E-13 2.6E-17 96.8 4.3 70 11-81 381-450 (450)
35 2guz_B Mitochondrial import in 99.2 2.4E-11 8.3E-16 69.7 3.6 53 12-72 4-59 (65)
36 2pzi_A Probable serine/threoni 92.6 0.06 2.1E-06 42.2 2.5 46 11-68 628-675 (681)
37 1qqr_A Streptokinase domain B; 60.4 5.4 0.00018 25.4 2.2 31 14-44 34-64 (138)
38 3nm9_A HMG-D, high mobility gr 58.4 20 0.00069 19.4 4.4 39 30-80 15-53 (73)
39 4a3n_A Transcription factor SO 57.6 18 0.00062 19.3 4.0 38 30-76 14-51 (71)
40 1ug2_A 2610100B20RIK gene prod 56.0 7.2 0.00025 23.2 2.1 23 23-45 67-89 (95)
41 1x5s_A Cold-inducible RNA-bind 53.5 21 0.00073 20.1 4.0 20 17-36 17-36 (102)
42 3f27_D Transcription factor SO 50.4 30 0.001 19.1 4.4 38 30-76 18-55 (83)
43 2crj_A SWI/SNF-related matrix- 50.1 34 0.0012 19.5 4.6 40 30-78 19-58 (92)
44 1i11_A Transcription factor SO 48.5 28 0.00096 19.2 3.9 41 30-79 16-56 (81)
45 2lr8_A CAsp8-associated protei 51.3 4.4 0.00015 22.8 0.0 23 23-45 47-69 (70)
46 1wgf_A Upstream binding factor 44.6 32 0.0011 19.5 3.8 42 30-80 32-73 (90)
47 2cs1_A PMS1 protein homolog 1; 43.8 31 0.001 19.7 3.6 39 30-77 19-57 (92)
48 2d7l_A WD repeat and HMG-box D 43.4 43 0.0015 18.8 4.1 44 30-81 17-60 (81)
49 2e6o_A HMG box-containing prot 41.9 42 0.0014 18.9 3.9 39 29-76 28-66 (87)
50 3u2b_C Transcription factor SO 41.5 43 0.0015 18.2 3.9 38 30-76 14-51 (79)
51 1hme_A High mobility group pro 41.2 43 0.0015 18.1 4.7 38 30-76 18-55 (77)
52 2lxi_A RNA-binding protein 10; 39.0 27 0.00093 19.5 2.8 20 18-37 7-26 (91)
53 1hry_A Human SRY; DNA, DNA-bin 35.7 31 0.0011 18.7 2.6 37 30-75 16-52 (76)
54 4euw_A Transcription factor SO 35.5 43 0.0015 19.7 3.4 39 29-76 40-78 (106)
55 2ytc_A PRE-mRNA-splicing facto 35.4 48 0.0016 17.8 3.4 20 17-36 17-36 (85)
56 2cqb_A Peptidyl-prolyl CIS-tra 35.2 52 0.0018 18.4 3.7 20 17-36 17-36 (102)
57 1j46_A SRY, sex-determining re 35.0 47 0.0016 18.5 3.4 37 30-75 16-52 (85)
58 1ckt_A High mobility group 1 p 34.8 53 0.0018 17.4 3.5 40 31-77 14-53 (71)
59 1k99_A Upstream binding factor 34.8 60 0.0021 18.8 3.9 39 30-77 22-60 (99)
60 1gt0_D Transcription factor SO 34.4 38 0.0013 18.5 2.9 38 30-76 14-51 (80)
61 1x4c_A Splicing factor, argini 33.4 52 0.0018 18.8 3.5 20 17-36 20-39 (108)
62 1wz6_A HMG-box transcription f 33.4 39 0.0013 18.7 2.8 38 30-76 19-56 (82)
63 2co9_A Thymus high mobility gr 33.1 46 0.0016 19.4 3.2 38 30-76 29-66 (102)
64 2lef_A LEF-1 HMG, protein (lym 32.8 54 0.0019 18.2 3.4 37 30-75 14-50 (86)
65 1wez_A HnRNP H', FTP-3, hetero 32.2 27 0.00093 20.1 2.1 19 17-35 20-38 (102)
66 1vq8_S 50S ribosomal protein L 31.6 29 0.00098 20.1 2.0 21 17-37 26-46 (85)
67 1iqt_A AUF1, heterogeneous nuc 30.6 48 0.0016 17.3 2.8 19 18-36 5-23 (75)
68 2cqh_A IGF-II mRNA-binding pro 29.6 73 0.0025 17.4 3.8 24 12-36 9-32 (93)
69 3r8s_T 50S ribosomal protein L 29.2 34 0.0012 20.1 2.1 21 17-37 31-51 (93)
70 2vkj_A TM1634; membrane protei 28.6 87 0.003 18.6 3.7 27 54-80 8-36 (106)
71 2dgw_A Probable RNA-binding pr 28.5 75 0.0026 17.3 3.5 20 17-36 15-34 (91)
72 2zjr_Q 50S ribosomal protein L 28.4 35 0.0012 20.1 2.0 21 17-37 26-46 (95)
73 3j21_T 50S ribosomal protein L 28.3 35 0.0012 19.8 2.0 21 17-37 27-47 (86)
74 2dgs_A DAZ-associated protein 28.3 76 0.0026 17.5 3.6 20 17-36 15-34 (99)
75 2div_A TRNA selenocysteine ass 28.3 80 0.0027 17.4 3.8 20 17-36 14-33 (99)
76 1cf7_A Protein (transcription 27.9 38 0.0013 19.0 2.1 43 23-80 9-51 (76)
77 3tq6_A Transcription factor A, 27.0 93 0.0032 20.7 4.3 39 30-77 21-59 (214)
78 3tmm_A Transcription factor A, 27.0 89 0.0031 21.2 4.2 39 30-77 53-91 (238)
79 3tve_T 50S ribosomal protein L 26.6 39 0.0013 19.8 2.0 21 17-37 25-45 (92)
80 3bbz_A P protein, phosphoprote 26.4 31 0.0011 17.9 1.3 29 58-86 4-32 (49)
81 2d9p_A Polyadenylate-binding p 24.4 59 0.002 18.2 2.6 20 17-36 20-39 (103)
82 2gzk_A Sex-determining region 23.5 1.4E+02 0.0047 18.5 4.5 35 33-76 19-53 (159)
83 2hzc_A Splicing factor U2AF 65 23.4 74 0.0025 17.0 2.8 21 17-37 11-31 (87)
84 2mss_A Protein (musashi1); RNA 22.9 56 0.0019 17.0 2.1 19 18-36 5-23 (75)
85 2cqp_A RNA-binding protein 12; 22.4 94 0.0032 17.1 3.2 20 17-36 20-39 (98)
86 2dgu_A Heterogeneous nuclear r 22.2 1.1E+02 0.0039 17.0 4.0 20 17-36 16-35 (103)
87 2b7e_A PRE-mRNA processing pro 21.8 1E+02 0.0036 16.5 3.6 49 27-82 3-56 (59)
88 1wxl_A Single-strand recogniti 21.0 1.1E+02 0.0037 16.3 4.1 38 30-79 15-52 (73)
89 3hm5_A DNA methyltransferase 1 20.9 82 0.0028 18.5 2.7 21 23-43 66-86 (93)
90 2eqz_A High mobility group pro 20.6 1.2E+02 0.0041 16.7 3.9 40 30-76 27-66 (86)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=7.5e-26 Score=135.33 Aligned_cols=76 Identities=51% Similarity=0.800 Sum_probs=69.5
Q ss_pred CCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812 6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (111)
Q Consensus 6 ~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~ 85 (111)
|+++...|||+||||+++++.++||++|+++++++|||+++..+ .+.+.|+.|++||++|+||.+|..||.++...
T Consensus 1 gs~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 1 GSSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP----KAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp CCSSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCT----THHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 57788899999999999999999999999999999999987544 57899999999999999999999999987544
No 2
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=2.7e-25 Score=138.22 Aligned_cols=77 Identities=34% Similarity=0.602 Sum_probs=69.4
Q ss_pred CCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812 4 GGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (111)
Q Consensus 4 ~~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 83 (111)
.+.+.+...|||+||||++.++.++||++||++++++|||+++..+ .+.+.|++|++||++|+||.+|..||..+.
T Consensus 9 ~~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 9 QGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSA----EAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp CCCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCS----HHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred CCCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 3445677899999999999999999999999999999999986544 688999999999999999999999999775
Q ss_pred C
Q 033812 84 D 84 (111)
Q Consensus 84 ~ 84 (111)
.
T Consensus 85 ~ 85 (99)
T 2yua_A 85 S 85 (99)
T ss_dssp C
T ss_pred c
Confidence 4
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=1.5e-25 Score=133.73 Aligned_cols=75 Identities=44% Similarity=0.707 Sum_probs=68.5
Q ss_pred CCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812 6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (111)
Q Consensus 6 ~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~ 85 (111)
|+.+...|||+||||+++++.++||++|+++++++|||+++.. .+.+.|+.|++||++|+||.+|..||..+...
T Consensus 1 gs~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 1 GSSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP-----GATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CCCSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSH-----HHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 5778889999999999999999999999999999999997542 68899999999999999999999999987543
No 4
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=3.9e-25 Score=133.07 Aligned_cols=79 Identities=46% Similarity=0.816 Sum_probs=69.7
Q ss_pred CCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812 4 GGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (111)
Q Consensus 4 ~~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 83 (111)
|.++.....|||+||||+++++.++||++|+++++++|||+++.. .+.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 1 g~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 1 GSSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN---KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp CCSCCSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT---HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred CCCCCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 345566778999999999999999999999999999999997543 34788999999999999999999999999875
Q ss_pred CC
Q 033812 84 DP 85 (111)
Q Consensus 84 ~~ 85 (111)
.+
T Consensus 78 ~~ 79 (82)
T 2ej7_A 78 GP 79 (82)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 5
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=5.9e-25 Score=134.04 Aligned_cols=73 Identities=51% Similarity=0.800 Sum_probs=67.1
Q ss_pred CCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812 6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (111)
Q Consensus 6 ~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 83 (111)
|++....|||+||||++.++.++||++||++++++|||+++. ..+.+.|+.|++||++|+||.+|..||..+.
T Consensus 1 gs~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 1 GSSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-----PDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp CCSCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-----HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-----hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 567788999999999999999999999999999999999763 2788999999999999999999999998663
No 6
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=133.11 Aligned_cols=80 Identities=45% Similarity=0.821 Sum_probs=70.1
Q ss_pred CCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812 4 GGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (111)
Q Consensus 4 ~~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 83 (111)
|.++.....|||+||||++.++.++||++|+++++++|||+++... ..+.+.|+.|++||++|+||.+|..||..+.
T Consensus 1 ~~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 1 GSSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNK---EEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCCCCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCS---HHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CCCCCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccH---HHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 3455667789999999999999999999999999999999976442 4788999999999999999999999999775
Q ss_pred CCC
Q 033812 84 DPL 86 (111)
Q Consensus 84 ~~~ 86 (111)
...
T Consensus 78 ~~~ 80 (92)
T 2dmx_A 78 DSW 80 (92)
T ss_dssp CSS
T ss_pred ccc
Confidence 544
No 7
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.91 E-value=8.1e-25 Score=134.67 Aligned_cols=78 Identities=29% Similarity=0.597 Sum_probs=68.5
Q ss_pred CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--cCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812 8 NGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKN--PGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (111)
Q Consensus 8 ~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~--~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~ 85 (111)
.+...|||+||||+++++.++||++||++++++|||+++.. +.....+.+.|++|++||++|+||.+|+.||..+..+
T Consensus 12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 91 (94)
T 1wjz_A 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP 91 (94)
T ss_dssp SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCC
Confidence 34578999999999999999999999999999999998642 2233578899999999999999999999999988654
No 8
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.91 E-value=2.1e-24 Score=128.45 Aligned_cols=70 Identities=37% Similarity=0.663 Sum_probs=63.7
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~ 85 (111)
..|||+||||+++++.++||++|+++++++|||+++.. .+.+.|+.|++||++|+||.+|..||..+...
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 71 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP-----GAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG 71 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT-----THHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence 36899999999999999999999999999999998643 57889999999999999999999999977443
No 9
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.90 E-value=4.7e-24 Score=130.00 Aligned_cols=73 Identities=42% Similarity=0.701 Sum_probs=66.0
Q ss_pred CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812 8 NGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (111)
Q Consensus 8 ~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~ 85 (111)
.....|||+||||++.++.++||++||++++++|||+++.. .+.+.|+.|++||++|+||.+|..||..+..+
T Consensus 13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDP-----GAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCST-----THHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh-----hHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 34578999999999999999999999999999999998643 57899999999999999999999999987543
No 10
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.90 E-value=1.1e-23 Score=133.13 Aligned_cols=73 Identities=40% Similarity=0.694 Sum_probs=66.4
Q ss_pred CCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812 7 SNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (111)
Q Consensus 7 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 83 (111)
......|||+||||++.++.++||++|+++++++|||+++..+ .+.+.|++|++||++|+||.+|..||..+.
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNP----EAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCH----HHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 4566789999999999999999999999999999999986543 688999999999999999999999998663
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.90 E-value=6.5e-24 Score=125.21 Aligned_cols=68 Identities=44% Similarity=0.792 Sum_probs=60.9
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 83 (111)
....|||+||||+++++.++||++|+++++++|||+++.. .+.|+.|++||++|+||.+|..||..+.
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-------AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-------HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-------HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3567999999999999999999999999999999997532 4789999999999999999999999763
No 12
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=7.8e-24 Score=134.29 Aligned_cols=73 Identities=30% Similarity=0.516 Sum_probs=66.2
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812 9 GGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~ 85 (111)
....|||+||||+++++.++||++||++++++|||+++.++ .+.+.|++|++||++|+||.+|..||..+...
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 89 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENP----KAVETFQKLQKAKEILTNEESRARYDHWRRSQ 89 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCS----THHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhc
Confidence 44689999999999999999999999999999999987544 58899999999999999999999999977543
No 13
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.90 E-value=5.3e-24 Score=132.47 Aligned_cols=73 Identities=42% Similarity=0.743 Sum_probs=64.0
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCC
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE 87 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~ 87 (111)
.|||+||||+++++.++||++|+++++++|||+++.. .+.+.+.|+.|++||++|+||.+|..||..+.....
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~---~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~ 74 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN---KEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT 74 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC---CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 5899999999999999999999999999999997644 236889999999999999999999999997755443
No 14
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.89 E-value=8.6e-24 Score=132.25 Aligned_cols=73 Identities=47% Similarity=0.782 Sum_probs=65.8
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCC
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE 87 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~ 87 (111)
..|||+||||+++++.++||++||++++++|||+++..+ .+.+.|++|++||++|+||.+|..||..+.....
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 74 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK----EAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE 74 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTC----THHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence 368999999999999999999999999999999987543 5788999999999999999999999998765543
No 15
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.89 E-value=1.1e-23 Score=132.91 Aligned_cols=77 Identities=30% Similarity=0.420 Sum_probs=67.9
Q ss_pred CCCCccCcchhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 7 SNGGSLSYYAILGIRKDA-SFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 7 ~~~~~~~~Y~iLgv~~~a-s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
......|||+||||++++ +.++||++||++++++|||+++. +.....+.+.|++|++||++|+||.+|..||..+..
T Consensus 10 ~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~-~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 10 LYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN-KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp STTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred HHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 344578999999999999 99999999999999999999864 233357889999999999999999999999998854
No 16
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.88 E-value=3.9e-23 Score=137.55 Aligned_cols=76 Identities=29% Similarity=0.581 Sum_probs=67.4
Q ss_pred CCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc--CChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812 7 SNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNP--GVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (111)
Q Consensus 7 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~--~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 82 (111)
.++...|||+||||+++++.++||++||++++++|||+++..+ ..++.+.+.|+.|++||++|+||.+|+.||..+
T Consensus 5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4566789999999999999999999999999999999987653 233467899999999999999999999999755
No 17
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.7e-23 Score=126.99 Aligned_cols=68 Identities=31% Similarity=0.645 Sum_probs=61.7
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCC
Q 033812 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 84 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~ 84 (111)
...|||+||||++.++.++||++|+++++++|||+++.+ .+.|++|++||++|+||.+|..||..+..
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 73 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-------TEKFKEISEAFEILNDPQKREIYDQYGLE 73 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-------HHHHHHHHHHHHHHTSHHHHHHHHHHCHH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-------HHHHHHHHHHHHHHCCHHHHHHHHHHCHH
Confidence 568999999999999999999999999999999997543 35899999999999999999999997643
No 18
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.86 E-value=5.6e-22 Score=136.37 Aligned_cols=72 Identities=44% Similarity=0.714 Sum_probs=65.2
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCCC
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE 87 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~~ 87 (111)
.|||+||||+++|+.++||+|||++++++|||+++..+ .+.+.|+.|++||++|+||.+|+.||..+.....
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~----~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~ 73 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP----NAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE 73 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCT----THHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence 58999999999999999999999999999999986554 5889999999999999999999999997755443
No 19
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.86 E-value=4.2e-22 Score=134.98 Aligned_cols=78 Identities=24% Similarity=0.322 Sum_probs=66.0
Q ss_pred CccCcchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCcC-ChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812 10 GSLSYYAILGIRKDAS--FSDIRSAYHKLAMKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL 86 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~as--~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~ 86 (111)
..+|||+||||+++++ ..+||++||++++++|||+++..+. .+..+.+.|..|++||+||+||.+|..||..+.+..
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~ 81 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQGIE 81 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHccCCC
Confidence 4679999999999988 9999999999999999999876532 223478899999999999999999999999776544
Q ss_pred C
Q 033812 87 E 87 (111)
Q Consensus 87 ~ 87 (111)
.
T Consensus 82 ~ 82 (174)
T 3hho_A 82 M 82 (174)
T ss_dssp C
T ss_pred c
Confidence 3
No 20
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.85 E-value=7.4e-22 Score=133.44 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=65.6
Q ss_pred cCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCcC-ChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812 12 LSYYAILGIRKDA--SFSDIRSAYHKLAMKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL 86 (111)
Q Consensus 12 ~~~Y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~ 86 (111)
+|||+||||++++ +..+||++||++++++|||+++..+. .+..+.+.|..|++||+||+||.+|..||..+.+..
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~ 78 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFD 78 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCC
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCC
Confidence 4899999999999 99999999999999999999876532 234577899999999999999999999999776544
No 21
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.85 E-value=2.2e-21 Score=134.57 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=65.4
Q ss_pred CccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCc-CChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCC
Q 033812 10 GSLSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNP-GVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 85 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~ 85 (111)
...|||+||||++. ++.++||++||++++++|||+++..+ ..+..+.+.|+.|++||+||+||.+|+.||..+.+.
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~ 119 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGI 119 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTC
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 46899999999986 78999999999999999999987543 233457789999999999999999999999766544
No 22
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.1e-22 Score=121.14 Aligned_cols=62 Identities=27% Similarity=0.433 Sum_probs=56.8
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHH
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~ 77 (111)
..|||+||||+++++.++||++||++++++|||+++.. .+.+.|++|++||++|+||.+|+.
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP-----GSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCT-----THHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----cHHHHHHHHHHHHHHHCCcccccC
Confidence 47999999999999999999999999999999998643 578899999999999999998764
No 23
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.82 E-value=6.8e-22 Score=145.31 Aligned_cols=72 Identities=39% Similarity=0.698 Sum_probs=0.0
Q ss_pred CCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhcc
Q 033812 6 GSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 82 (111)
Q Consensus 6 ~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 82 (111)
++.+...|||+||||+++|+.++||+|||+++++||||+++.. .+.++|++|++||++|+||.+|+.||.++
T Consensus 22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 93 (329)
T 3lz8_A 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-----DAEAKFKDLAEAWEVLKDEQRRAEYDQLW 93 (329)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh-----HHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence 3456678999999999999999999999999999999997643 67889999999999999999999999974
No 24
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.80 E-value=1.7e-20 Score=114.32 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=60.5
Q ss_pred CCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHH
Q 033812 4 GGGSNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKR 75 (111)
Q Consensus 4 ~~~~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R 75 (111)
+++......++|+||||+++|+.++||+|||++++++|||+++.++ +.+.+.|++|++||++|+|...|
T Consensus 8 ~~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~---~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 8 LVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENH---DIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CCCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCH---HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch---HHHHHHHHHHHHHHHHHHhhccc
Confidence 3455666789999999999999999999999999999999976442 46899999999999999998776
No 25
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.80 E-value=3.9e-21 Score=122.20 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=59.5
Q ss_pred CccCcchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812 10 GSLSYYAILGIRKDASF--SDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 83 (111)
...++|+||||++.++. ++||+|||++++++|||+++. .+.|++|++||++|+||.+|+.||.+..
T Consensus 6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~--------~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--------EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--------TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc--------HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 35689999999999998 999999999999999999753 3689999999999999999999997554
No 26
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.2e-20 Score=110.71 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=58.2
Q ss_pred CCCCCCCCCccCcchhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHH
Q 033812 2 DGGGGSNGGSLSYYAILGIRK-DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKR 75 (111)
Q Consensus 2 ~~~~~~~~~~~~~Y~iLgv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R 75 (111)
.||....+...++|+||||++ +++.++||++||++++++|||+.+ ..+.|++|++||++|+++..|
T Consensus 4 ~g~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g--------~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 4 KGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG--------SPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CSCCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC--------CHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--------CHHHHHHHHHHHHHHhhhhhc
Confidence 467777888889999999999 799999999999999999999952 235899999999999988655
No 27
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.79 E-value=2.6e-20 Score=111.36 Aligned_cols=63 Identities=14% Similarity=0.360 Sum_probs=56.1
Q ss_pred CCccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHh
Q 033812 9 GGSLSYYAILGIRKD--ASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (111)
Q Consensus 9 ~~~~~~Y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd 79 (111)
....++|+||||+++ ++.++||++||++++++|||+++ ..+.|++|++||++|+|+.+|..++
T Consensus 8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~--------~~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG--------SHALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC--------CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC--------CHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 344689999999999 99999999999999999999963 2478999999999999999998854
No 28
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.79 E-value=8.9e-21 Score=128.16 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=57.6
Q ss_pred CccCcchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccC
Q 033812 10 GSLSYYAILGIRKDAS--FSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 83 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~as--~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 83 (111)
...|+|+||||+++|+ .++||+|||++++++|||+++. .+.|++|++||++|+||.+|+.||..+.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~--------~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--------EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C--------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC--------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 4578999999999998 6999999999999999999653 2579999999999999999999999774
No 29
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.79 E-value=2.5e-20 Score=126.72 Aligned_cols=67 Identities=19% Similarity=0.427 Sum_probs=59.8
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHH
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY 78 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Y 78 (111)
..|+|+||||++.++.++||+|||++++++|||+++..+. .+.+.+.|+.|++||++|+|+.+|+.|
T Consensus 116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~-e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPY-EQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTT-HHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcch-HHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 3689999999999999999999999999999999875432 235889999999999999999999876
No 30
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.78 E-value=4.8e-20 Score=125.52 Aligned_cols=73 Identities=22% Similarity=0.355 Sum_probs=62.3
Q ss_pred CCCCCccCcchhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHH
Q 033812 6 GSNGGSLSYYAIL------GIRK-DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY 78 (111)
Q Consensus 6 ~~~~~~~~~Y~iL------gv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Y 78 (111)
.+.....|||+|| |+++ +++..+||++||++++++|||+++. +.+.|..|++||+||+||.+|..|
T Consensus 5 ~~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-------a~~~f~~i~~AY~vL~dp~~R~~Y 77 (181)
T 3uo3_A 5 VQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-------GSEQSSTLNQAYHTLKDPLRRSQY 77 (181)
T ss_dssp --CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-------CSSGGGSHHHHHHHHHSHHHHHHH
T ss_pred cCCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-------HHHHHHHHHHHHHHHcChHHHHHH
Confidence 3556678999999 4665 8999999999999999999999764 456799999999999999999999
Q ss_pred hhcc-CCC
Q 033812 79 DAGL-YDP 85 (111)
Q Consensus 79 d~~~-~~~ 85 (111)
|..+ .+.
T Consensus 78 d~~l~~g~ 85 (181)
T 3uo3_A 78 MLKLLRNI 85 (181)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCC
Confidence 9977 444
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.77 E-value=7e-20 Score=115.06 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=53.7
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CcCChHHHHHHHHHHHHHHHHhCCch
Q 033812 10 GSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAK---NPGVAGEAKCRFQQIQEAYSVLSDEN 73 (111)
Q Consensus 10 ~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~~~~~f~~i~~Ay~vL~d~~ 73 (111)
...|||+|||++. |+.++||+|||++++++||||++. ++.....+.+.|+.|++||++|+|+.
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 3479999999996 999999999999999999999753 22233457899999999999999985
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.76 E-value=1.8e-19 Score=110.37 Aligned_cols=59 Identities=19% Similarity=0.341 Sum_probs=52.2
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCC
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 71 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d 71 (111)
.++|++|||++.|+.++||+|||++++++|||+++.++. ...+.+.|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~-~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPY-EQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchh-HhHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999875432 23688999999999999975
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.75 E-value=1.3e-19 Score=144.12 Aligned_cols=76 Identities=41% Similarity=0.655 Sum_probs=40.7
Q ss_pred CCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812 7 SNGGSLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL 86 (111)
Q Consensus 7 ~~~~~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~ 86 (111)
......|||+||||+++|+.++||+|||++++++|||+++..+ .+.+.|++|++||++|+||.+|+.||..+....
T Consensus 16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~----~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~ 91 (780)
T 3apo_A 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP----NAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 91 (780)
T ss_dssp -------CHHHHTCCTTCCHHHHHHHHCC---------------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh----HHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence 4455689999999999999999999999999999999986543 678899999999999999999999999775443
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.33 E-value=7.5e-13 Score=96.78 Aligned_cols=70 Identities=39% Similarity=0.679 Sum_probs=56.7
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhc
Q 033812 11 SLSYYAILGIRKDASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 81 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~ 81 (111)
..++|.+||+.+.++.++|+++|+++++++|||+.+.+ ..+..+.+.|+.|.+||++|+||.+|..||.+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~-~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE-EEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH-HHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 35899999999999999999999999999999997532 22346889999999999999999999999973
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.4e-11 Score=69.66 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=45.0
Q ss_pred cCcchhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCc
Q 033812 12 LSYYAILGIRKD---ASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDE 72 (111)
Q Consensus 12 ~~~Y~iLgv~~~---as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~ 72 (111)
..-|.||||++. ++.++|+++||+|+..+|||+.+ .......|++|+++|...
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGG--------S~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGG--------SFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTC--------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCC--------CHHHHHHHHHHHHHHHHH
Confidence 345789999999 99999999999999999999953 345677899999998643
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=92.59 E-value=0.06 Score=42.18 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=34.6
Q ss_pred ccCcchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHH
Q 033812 11 SLSYYAILGIRKDASF--SDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSV 68 (111)
Q Consensus 11 ~~~~Y~iLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~v 68 (111)
.+++|.+||++.+... .+|+++||++++..+++ .+++..|..|..|
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~------------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ------------RHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH------------HHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh------------HHHHHHHHHhccc
Confidence 4459999999766544 67999999999975333 2577788888765
No 37
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=60.44 E-value=5.4 Score=25.38 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=27.4
Q ss_pred cchhcCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 033812 14 YYAILGIRKDASFSDIRSAYHKLAMKWHPDR 44 (111)
Q Consensus 14 ~Y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk 44 (111)
++..|.|....+.++++++-..+..+.||+-
T Consensus 34 ~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 34 LLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 3677778888999999999999999999994
No 38
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=58.37 E-value=20 Score=19.43 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhh
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~ 80 (111)
.+.+|..++.-||+. ...+..+.|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGI---------KVTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSC---------CHHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHcCCc---hHHHHH
Confidence 455677777888986 356778899999999987 666643
No 39
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=57.63 E-value=18 Score=19.30 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRS 76 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 76 (111)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++..
T Consensus 14 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~~eK~~ 51 (71)
T 4a3n_A 14 AKDERKRLAQQNPDL---------HNAELSKMLGKSWKALTLAEKRP 51 (71)
T ss_dssp HHHHHHHHHTTCTTS---------CHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhcCCHHHHHH
Confidence 455677777778886 24577888999999998665443
No 40
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=56.02 E-value=7.2 Score=23.17 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCC
Q 033812 23 DASFSDIRSAYHKLAMKWHPDRS 45 (111)
Q Consensus 23 ~as~~~Ik~ayr~l~~~~HPDk~ 45 (111)
+-++++|+.+|+.|++.+|-.+.
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCSS
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc
Confidence 45889999999999999986653
No 41
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.53 E-value=21 Score=20.12 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=17.6
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l 36 (111)
|=+|++..+.++|++.|...
T Consensus 17 v~nLp~~~t~~~l~~~f~~~ 36 (102)
T 1x5s_A 17 VGGLSFDTNEQSLEQVFSKY 36 (102)
T ss_dssp EESCCTTCCHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHhc
Confidence 55899999999999999876
No 42
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=50.45 E-value=30 Score=19.09 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRS 76 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 76 (111)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++..
T Consensus 18 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~~eK~~ 55 (83)
T 3f27_D 18 AKDERKRLAQQNPDL---------HNAELSKMLGKSWKALTLAEKRP 55 (83)
T ss_dssp HHHHHHHHHHHCSSS---------CHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhcCCHHHHHH
Confidence 456677788889986 35577888999999998665443
No 43
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=50.08 E-value=34 Score=19.49 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY 78 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Y 78 (111)
.+..|..++.-||+. ...+..+.|.+.|..|++.++....
T Consensus 19 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~eeK~~Y~ 58 (92)
T 2crj_A 19 LNERREQIRTRHPDL---------PFPEITKMLGAEWSKLQPAEKQRYL 58 (92)
T ss_dssp HHHHHHHHHHHCTTC---------CHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455667777788986 3567788999999999977654433
No 44
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=48.48 E-value=28 Score=19.23 Aligned_cols=41 Identities=10% Similarity=0.218 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHh
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd 79 (111)
.+.++..++.-||+. ...+..+.|.+.|..|++.++...++
T Consensus 16 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (81)
T 1i11_A 16 AKDERRKILQAFPDM---------HNSNISKILGSRWKAMTNLEKQPYYE 56 (81)
T ss_dssp HHHHHHHHHTTCSSC---------CHHHHHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHhhhhhCCHHHHHHHHH
Confidence 345566667778875 35567889999999999776654444
No 45
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=51.35 E-value=4.4 Score=22.78 Aligned_cols=23 Identities=9% Similarity=0.291 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCC
Q 033812 23 DASFSDIRSAYHKLAMKWHPDRS 45 (111)
Q Consensus 23 ~as~~~Ik~ayr~l~~~~HPDk~ 45 (111)
+-++++|+.+|+.|+..+|-.|+
T Consensus 47 nks~~QV~~RF~~Lm~Lf~kSk~ 69 (70)
T 2lr8_A 47 DKNPNQVSERFQQLMKLFEKSKC 69 (70)
Confidence 45788899999999988876553
No 46
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=44.55 E-value=32 Score=19.51 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhh
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~ 80 (111)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++....+.
T Consensus 32 ~~~~r~~~k~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~Y~~~ 73 (90)
T 1wgf_A 32 SEEKRRQLQEERPEL---------SESELTRLLARMWNDLSEKKKAKYKAR 73 (90)
T ss_dssp HHHTHHHHHHHCTTS---------CHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455677777788985 356778899999999996655544443
No 47
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.77 E-value=31 Score=19.68 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~ 77 (111)
.+..|..++.-||+. ...+..+.|.+.|..|++.++...
T Consensus 19 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~eeK~~y 57 (92)
T 2cs1_A 19 VQDHRPQFLIENPKT---------SLEDATLQIEELWKTLSEEEKLKY 57 (92)
T ss_dssp HHHHHHHHHHHCCSS---------CHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 445566777778986 245778889999999986655433
No 48
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.45 E-value=43 Score=18.81 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhhc
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 81 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~~ 81 (111)
-+.+|..++.-||+.. ...+..+.|.+.|..|++.++....+..
T Consensus 17 ~~e~R~~ik~~~P~~~--------~~~eisK~lge~Wk~ls~eeK~~y~~~A 60 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS--------DEADIIKEGMIRFRVLSTEERKVWANKA 60 (81)
T ss_dssp HHHHHHHHHHHCTTCC--------SHHHHHHHHHHHHSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCc--------hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556777888899962 1557788999999999966665554443
No 49
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=41.87 E-value=42 Score=18.85 Aligned_cols=39 Identities=10% Similarity=0.249 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHH
Q 033812 29 IRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRS 76 (111)
Q Consensus 29 Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 76 (111)
-.+.+|..++.-||+. ...+..+.|.+.|..|++.++..
T Consensus 28 f~~~~r~~~~~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~ 66 (87)
T 2e6o_A 28 FAKKYRVEYTQMYPGK---------DNRAISVILGDRWKKMKNEERRM 66 (87)
T ss_dssp HHHHTHHHHHHHCTTS---------CHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhhCCHHHHHH
Confidence 4556677777788985 35567788999999998655443
No 50
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=41.53 E-value=43 Score=18.22 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRS 76 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 76 (111)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++..
T Consensus 14 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~~eK~~ 51 (79)
T 3u2b_C 14 SQIERRKIMEQSPDM---------HNAEISKRLGKRWKLLKDSDKIP 51 (79)
T ss_dssp HHHHHHHHHTTSTTS---------CHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCcCC---------CHHHHHHHHHHHHHhCCHHHHHH
Confidence 455666777778876 35577888999999998655443
No 51
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=41.19 E-value=43 Score=18.14 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRS 76 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 76 (111)
.+..|..++.-||+. ...+..+.|.+.|..|++.++..
T Consensus 18 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~~eK~~ 55 (77)
T 1hme_A 18 CSEYRPKIKGEHPGL---------SIGDVAKKLGEMWNNTAADDKQP 55 (77)
T ss_dssp HHHHHHHHHHHCTTC---------CHHHHHHHHHHHHHHSCGGGSHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHhCCHHHHHH
Confidence 345566667778885 35677889999999999765543
No 52
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=39.01 E-value=27 Score=19.54 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=17.4
Q ss_pred cCCCCCCCHHHHHHHHHHHH
Q 033812 18 LGIRKDASFSDIRSAYHKLA 37 (111)
Q Consensus 18 Lgv~~~as~~~Ik~ayr~l~ 37 (111)
=||+++++.++|++.|...-
T Consensus 7 ~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp ETCCSSCCHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHhC
Confidence 38999999999999998764
No 53
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=35.71 E-value=31 Score=18.69 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKR 75 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R 75 (111)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++.
T Consensus 16 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~~eK~ 52 (76)
T 1hry_A 16 SRDQRRKMALENPRMR---------NSEISKQLGYQWKMLTEAEKW 52 (76)
T ss_dssp HHHHHHHHHHHCSCCS---------SSHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCcCCC---------HHHHHHHHHhHHHhCCHHHHH
Confidence 4556667777789863 224567888999998855443
No 54
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=35.52 E-value=43 Score=19.70 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHH
Q 033812 29 IRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRS 76 (111)
Q Consensus 29 Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 76 (111)
-.+.+|..++.-||+. ...+..+.|.+.|..|++.++..
T Consensus 40 F~~~~r~~~k~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~ 78 (106)
T 4euw_A 40 WAQAARRKLADQYPHL---------HNAELSKTLGKLWRLLNESEKRP 78 (106)
T ss_dssp HHHHHHHHHHHHCTTS---------CHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566777788888986 24577888999999998665443
No 55
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.42 E-value=48 Score=17.76 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=16.3
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l 36 (111)
|=||++..+.++|++.|.+.
T Consensus 17 V~~l~~~~t~~~l~~~f~~~ 36 (85)
T 2ytc_A 17 VGGLGDTITETDLRNHFYQF 36 (85)
T ss_dssp EECCTTTSCHHHHHHHHHTT
T ss_pred EcCCCCCCCHHHHHHHHHhC
Confidence 44899999999999888653
No 56
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.18 E-value=52 Score=18.39 Aligned_cols=20 Identities=10% Similarity=0.267 Sum_probs=17.1
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l 36 (111)
|=+|+..++.++|++.|.+.
T Consensus 17 V~nLp~~~t~~~l~~~f~~~ 36 (102)
T 2cqb_A 17 VGGLAEEVDDKVLHAAFIPF 36 (102)
T ss_dssp EESCCSSCCHHHHHHHHTTT
T ss_pred EeCCCCCCCHHHHHHHhhcc
Confidence 55899999999999988764
No 57
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=35.01 E-value=47 Score=18.52 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKR 75 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R 75 (111)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++.
T Consensus 16 ~~~~r~~~~~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~ 52 (85)
T 1j46_A 16 SRDQRRKMALENPRM---------RNSEISKQLGYQWKMLTEAEKW 52 (85)
T ss_dssp HHHHHHHHHHHSTTS---------CHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHHCCHHHHH
Confidence 445666677778886 3456778899999999865443
No 58
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=34.83 E-value=53 Score=17.38 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHH
Q 033812 31 SAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (111)
Q Consensus 31 ~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~ 77 (111)
+..|..++.-||+... ...+..+.|.+.|..|++..+..-
T Consensus 14 ~~~r~~~~~~~p~~~~-------~~~eisk~lg~~Wk~ls~~eK~~y 53 (71)
T 1ckt_A 14 QTCREEHKKKHPDASV-------NFSEFSKKCSERWKTMSAKEKGKF 53 (71)
T ss_dssp HHHHHHHHHHCTTCCC-------CHHHHHHHHHHHHHTCCTTTSHHH
T ss_pred HHHHHHHHHHCCCCCC-------cHHHHHHHHHHHHhhCCHHHHHHH
Confidence 3445556677898631 235778899999999987765443
No 59
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=34.77 E-value=60 Score=18.77 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~ 77 (111)
.+..|..++.-||+.. ..+..+.|.+.|..|++.++...
T Consensus 22 ~~~~r~~ik~~~P~~~---------~~eisk~lg~~Wk~ls~eeK~~Y 60 (99)
T 1k99_A 22 FMEKRAKYAKLHPEMS---------NLDLTKILSKKYKELPEKKKMKY 60 (99)
T ss_dssp HHHHHHHHHTTCTTSC---------SHHHHHHHHHHHHHSCSTTHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHHhCCHHHHHHH
Confidence 4455666667788852 44677889999999998765433
No 60
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=34.36 E-value=38 Score=18.55 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRS 76 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 76 (111)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++..
T Consensus 14 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~ls~eeK~~ 51 (80)
T 1gt0_D 14 SRGQRRKMAQENPKM---------HNSEISKRLGAEWKLLSETEKRP 51 (80)
T ss_dssp HHHHHHHHHTTSTTS---------CHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHhCCHHHHHH
Confidence 344566666678875 34567788999999998655443
No 61
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.43 E-value=52 Score=18.81 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=16.7
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l 36 (111)
|=+|+..++.++|+..|.+.
T Consensus 20 V~nLp~~~t~~~l~~~F~~~ 39 (108)
T 1x4c_A 20 VSGLPPSGSWQDLKDHMREA 39 (108)
T ss_dssp EESCCSSCCHHHHHHHHGGG
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 44899999999999988654
No 62
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=33.39 E-value=39 Score=18.65 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRS 76 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 76 (111)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 19 ~~~~r~~~~~~~p~~~---------~~eisk~lg~~Wk~ls~~eK~~ 56 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLD---------NRGATKILADWWAVLDPKEKQK 56 (82)
T ss_dssp HHHHHHHHHHHCSSSC---------TTHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC---------HHHHHHHHHHHHhhCCHHHHHH
Confidence 4566777777889853 2356778889999998655433
No 63
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.14 E-value=46 Score=19.36 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRS 76 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 76 (111)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++..
T Consensus 29 ~~~~r~~i~~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~~ 66 (102)
T 2co9_A 29 FRDTQAAIKGQNPNA---------TFGEVSKIVASMWDGLGEEQKQV 66 (102)
T ss_dssp HHHHHHHHHHHCTTS---------CHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHccCCHHHHHH
Confidence 455666677778986 24567778888898888665443
No 64
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=32.79 E-value=54 Score=18.23 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKR 75 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R 75 (111)
.+.+|..++.-||+. ...+..+.|.+.|..|++.++.
T Consensus 14 ~~~~r~~~~~~~P~~---------~~~eisk~lg~~Wk~ls~eeK~ 50 (86)
T 2lef_A 14 MKEMRANVVAESTLK---------ESAAINQILGRRWHALSREEQA 50 (86)
T ss_dssp HHHHHHHHHHHSSCC---------CHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHhcCCHHHHH
Confidence 345566677778886 2456778899999999865543
No 65
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.15 E-value=27 Score=20.10 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=16.2
Q ss_pred hcCCCCCCCHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHK 35 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~ 35 (111)
|=+|+..++.++|+..|..
T Consensus 20 V~nLp~~~te~~l~~~F~~ 38 (102)
T 1wez_A 20 MRGLPYRATENDIYNFFSP 38 (102)
T ss_dssp EESCCTTCCHHHHHHSSCS
T ss_pred EeCCCCCCCHHHHHHHHHH
Confidence 4589999999999988864
No 66
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=31.60 E-value=29 Score=20.08 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=18.0
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKLA 37 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l~ 37 (111)
++-|++.|+..|||+|..++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 567899999999999988764
No 67
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=30.55 E-value=48 Score=17.25 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.5
Q ss_pred cCCCCCCCHHHHHHHHHHH
Q 033812 18 LGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 18 Lgv~~~as~~~Ik~ayr~l 36 (111)
=||+++.+.++|++.|.+.
T Consensus 5 ~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 3789999999999999875
No 68
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.64 E-value=73 Score=17.38 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=18.7
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHH
Q 033812 12 LSYYAILGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 12 ~~~Y~iLgv~~~as~~~Ik~ayr~l 36 (111)
...| |=+|+.+.+.++|++.|.+.
T Consensus 9 ~~l~-V~nLp~~~t~~~l~~~F~~~ 32 (93)
T 2cqh_A 9 NKLY-IGNLSPAVTADDLRQLFGDR 32 (93)
T ss_dssp CCEE-EECCCTTCCHHHHHHHHHHT
T ss_pred cEEE-EeCCCCCCCHHHHHHHHHHc
Confidence 3344 66899999999999888654
No 69
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=29.15 E-value=34 Score=20.11 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=17.2
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKLA 37 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l~ 37 (111)
++-|++.|+..|||+|..++-
T Consensus 31 ~F~V~~~AnK~eIK~AVE~lf 51 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKLF 51 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHHS
T ss_pred EEEECCCCCHHHHHHHHHHHc
Confidence 356889999999999987763
No 70
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=28.59 E-value=87 Score=18.55 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHH--hCCchHHHHHhh
Q 033812 54 EAKCRFQQIQEAYSV--LSDENKRSMYDA 80 (111)
Q Consensus 54 ~~~~~f~~i~~Ay~v--L~d~~~R~~Yd~ 80 (111)
...++.+.+++||++ .++..+-..|-.
T Consensus 8 ~k~ey~eKl~KAYElYvfs~~~~F~~YV~ 36 (106)
T 2vkj_A 8 VKLTRMEKTLKAYELYIFSDYENFENYVK 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 456788899999994 578888888854
No 71
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.55 E-value=75 Score=17.26 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=17.0
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l 36 (111)
|=||+..++.++|++.|...
T Consensus 15 v~nLp~~~t~~~l~~~F~~~ 34 (91)
T 2dgw_A 15 LRGAPFNVTEKNVMEFLAPL 34 (91)
T ss_dssp EECCCSSCCHHHHHHHHTTS
T ss_pred EECCCCCCCHHHHHHHHhhC
Confidence 55899999999999988764
No 72
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=28.39 E-value=35 Score=20.13 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=18.3
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKLA 37 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l~ 37 (111)
++-|++.|+..|||+|..++-
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 677899999999999988774
No 73
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.35 E-value=35 Score=19.75 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=17.4
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKLA 37 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l~ 37 (111)
++-|++.|+..|||+|..++-
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf 47 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIF 47 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHT
T ss_pred EEEEcCCCCHHHHHHHHHHHc
Confidence 356889999999999988764
No 74
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.29 E-value=76 Score=17.55 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=17.1
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l 36 (111)
|=+|+..++.++|++.|...
T Consensus 15 V~nlp~~~t~~~l~~~F~~~ 34 (99)
T 2dgs_A 15 VGGIPHNCGETELREYFKKF 34 (99)
T ss_dssp EESCCSSCCHHHHHHHHSSS
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 55899999999999988764
No 75
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.29 E-value=80 Score=17.40 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=17.4
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l 36 (111)
|=+|+++++.++|+..|.+.
T Consensus 14 V~nLp~~~t~~~l~~~F~~~ 33 (99)
T 2div_A 14 MGDLEPYMDENFISRAFATM 33 (99)
T ss_dssp ECSCCTTCCHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHh
Confidence 56899999999999998775
No 76
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=27.85 E-value=38 Score=19.02 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHhh
Q 033812 23 DASFSDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 80 (111)
Q Consensus 23 ~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd~ 80 (111)
..+...+-+.|-++... +|+.. ..|++|-+.|.-..+|+.||-
T Consensus 9 ~~SL~~lt~kFi~l~~~-~~~~~--------------i~l~~aa~~L~v~~kRRiYDI 51 (76)
T 1cf7_A 9 EKSLGLLTTKFVSLLQE-AKDGV--------------LDLKLAADTLAVRQKRRIYDI 51 (76)
T ss_dssp TTCHHHHHHHHHHHHHH-SSTTE--------------EEHHHHHHHTTTCCTHHHHHH
T ss_pred cCcHHHHHHHHHHHHHh-CCCCc--------------CcHHHHHHHhCCccceehhhH
Confidence 45677788888887765 34431 127778888875479999996
No 77
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=27.02 E-value=93 Score=20.68 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~ 77 (111)
-+..|..++.-||+. ...+..+.|.+.|..|++.++...
T Consensus 21 ~~~~r~~~k~~~P~~---------~~~eisk~lge~Wk~Ls~~EK~~y 59 (214)
T 3tq6_A 21 SKEQLPIFKAQNPDA---------KTTELIRRIAQRWRELPDSKKKIY 59 (214)
T ss_dssp HHHHHHHHHHHCTTS---------CHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCC---------CHHHHHHHHHHHHHccCHHhhhHH
Confidence 445566677778986 256778888889999987655433
No 78
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=26.95 E-value=89 Score=21.15 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 77 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~ 77 (111)
-+..|..++.-||+. ...+..+.+.+.|..|++.++...
T Consensus 53 ~~e~r~~~k~~~P~~---------~~~eisk~lge~Wk~Ls~~EK~~y 91 (238)
T 3tmm_A 53 SKEQLPIFKAQNPDA---------KTTELIRRIAQRWRELPDSKKKIY 91 (238)
T ss_dssp HHHHHHHHHHHSTTS---------CHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCC---------CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455566677778986 256778888899999987655433
No 79
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=26.61 E-value=39 Score=19.79 Aligned_cols=21 Identities=14% Similarity=0.187 Sum_probs=17.5
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKLA 37 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l~ 37 (111)
++-|++.|+..|||+|..++-
T Consensus 25 ~F~V~~~AnK~qIK~aVe~lf 45 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETAF 45 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 467889999999999987763
No 80
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=26.40 E-value=31 Score=17.94 Aligned_cols=29 Identities=3% Similarity=0.103 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCchHHHHHhhccCCCC
Q 033812 58 RFQQIQEAYSVLSDENKRSMYDAGLYDPL 86 (111)
Q Consensus 58 ~f~~i~~Ay~vL~d~~~R~~Yd~~~~~~~ 86 (111)
+....+-|-+.++||..|..|+..+....
T Consensus 4 Kltl~~l~kdCi~np~~r~~Fe~ki~~~~ 32 (49)
T 3bbz_A 4 KVMITKMITDSVANPQMKQAFEQRLAKAS 32 (49)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34556778899999999999998765443
No 81
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.43 E-value=59 Score=18.19 Aligned_cols=20 Identities=10% Similarity=0.267 Sum_probs=16.4
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l 36 (111)
|=+|++.++.++|++.|.+.
T Consensus 20 V~nlp~~~t~~~l~~~F~~~ 39 (103)
T 2d9p_A 20 VKNLDDGIDDERLRKAFSPF 39 (103)
T ss_dssp EECCCTTCCHHHHHHTTTTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 45789999999999888653
No 82
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=23.45 E-value=1.4e+02 Score=18.48 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHH
Q 033812 33 YHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRS 76 (111)
Q Consensus 33 yr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 76 (111)
.+..++.-||+. ...+..+.+.+.|..|++.++..
T Consensus 19 ~~~ki~~~~P~~---------~~~eisk~lg~~Wk~ls~~eK~~ 53 (159)
T 2gzk_A 19 QRRKMALENPRM---------RNSEISKQLGYQWKMLTEAEKWP 53 (159)
T ss_dssp HHHHHHHHCSSC---------CHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHCCCC---------CHHHHHHHHHHHHHHhhHHHhcc
Confidence 344555778995 35577888899999998766543
No 83
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=23.35 E-value=74 Score=16.97 Aligned_cols=21 Identities=5% Similarity=-0.024 Sum_probs=17.9
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKLA 37 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l~ 37 (111)
|=+|+.+++.++|++.|.+..
T Consensus 11 V~nLp~~~t~~~l~~~F~~~~ 31 (87)
T 2hzc_A 11 VGNIPFGITEEAMMDFFNAQM 31 (87)
T ss_dssp EESCCTTCCHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHh
Confidence 447899999999999998874
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=22.86 E-value=56 Score=17.02 Aligned_cols=19 Identities=11% Similarity=0.436 Sum_probs=15.9
Q ss_pred cCCCCCCCHHHHHHHHHHH
Q 033812 18 LGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 18 Lgv~~~as~~~Ik~ayr~l 36 (111)
=||+++.+.++|+..|.+.
T Consensus 5 ~nlp~~~t~~~l~~~F~~~ 23 (75)
T 2mss_A 5 GGLSVNTTVEDVKHYFEQF 23 (75)
T ss_dssp ECCCSSCCHHHHHHHHHTT
T ss_pred ecCCCCCCHHHHHHHHHhc
Confidence 3789999999999988764
No 85
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.35 E-value=94 Score=17.05 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=16.5
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l 36 (111)
|=+|+..++.++|++.|...
T Consensus 20 v~nLp~~~t~~~l~~~F~~~ 39 (98)
T 2cqp_A 20 VQNMPFTVSIDEILDFFYGY 39 (98)
T ss_dssp EESCCTTCCHHHHHHHTTTS
T ss_pred EeCCCCCCCHHHHHHHHHHc
Confidence 44899999999999888653
No 86
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=22.18 E-value=1.1e+02 Score=17.00 Aligned_cols=20 Identities=5% Similarity=0.210 Sum_probs=17.1
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 033812 17 ILGIRKDASFSDIRSAYHKL 36 (111)
Q Consensus 17 iLgv~~~as~~~Ik~ayr~l 36 (111)
|=+|++.++.++|++.|...
T Consensus 16 V~nl~~~~t~~~l~~~F~~~ 35 (103)
T 2dgu_A 16 VRNLANTVTEEILEKAFSQF 35 (103)
T ss_dssp EECCCTTCCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 55899999999999988765
No 87
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.84 E-value=1e+02 Score=16.46 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHH---HHHHHHhCC-ch-HHHHHhhcc
Q 033812 27 SDIRSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQI---QEAYSVLSD-EN-KRSMYDAGL 82 (111)
Q Consensus 27 ~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i---~~Ay~vL~d-~~-~R~~Yd~~~ 82 (111)
++..++|.+|.+...=|..- .=++..+.| .--|.+|.| |. ++..|+.++
T Consensus 3 eEae~aF~~lL~~~~V~s~w-------sweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~ 56 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTW-------SFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYL 56 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSC-------CHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCC-------cHHHHHHHhccCCCccccccCCHHHHHHHHHHHH
Confidence 56788999999887544321 233444555 457999997 65 566777654
No 88
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=20.99 E-value=1.1e+02 Score=16.31 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHHHHh
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 79 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~Yd 79 (111)
.+..|..++.-||+. ...+..+.|.+.|..| ..|..|.
T Consensus 15 ~~~~r~~~~~~~p~~---------~~~eisk~lg~~Wk~l---~eK~~y~ 52 (73)
T 1wxl_A 15 LNDTRESIKRENPGI---------KVTEIAKKGGEMWKEL---KDKSKWE 52 (73)
T ss_dssp HHHHHHHHHHHSTTC---------CHHHHHHHHHHHHHTC---TTHHHHH
T ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHHhh---HhhHHHH
Confidence 344566677778985 3467788899999999 3344443
No 89
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=20.90 E-value=82 Score=18.46 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCC
Q 033812 23 DASFSDIRSAYHKLAMKWHPD 43 (111)
Q Consensus 23 ~as~~~Ik~ayr~l~~~~HPD 43 (111)
.=|.++||.+|..++++..-.
T Consensus 66 ~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 66 KRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 458999999999998876433
No 90
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.56 E-value=1.2e+02 Score=16.72 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCCCCCCcCChHHHHHHHHHHHHHHHHhCCchHHH
Q 033812 30 RSAYHKLAMKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRS 76 (111)
Q Consensus 30 k~ayr~l~~~~HPDk~~~~~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 76 (111)
.+..|..++.-||+... ...+..+.|.+.|..|++.++..
T Consensus 27 ~~~~r~~~k~~~p~~~~-------~~~eisk~lg~~Wk~ls~~eK~~ 66 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPV-------NFAEFSKKCSERWKTMSGKEKSK 66 (86)
T ss_dssp HHHHHHHHHHHCTTSCC-------CHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-------cHHHHHHHHHHHHHhCCHHHHHH
Confidence 44556667777898631 13567888999999998665443
Done!