BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033813
         (111 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q39195|PST2_ARATH Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana
           GN=PSBT PE=3 SV=2
          Length = 103

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 79/110 (71%), Gaps = 8/110 (7%)

Query: 1   MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRR 60
           MASMTM A +  P ++AK P+AT  +R  ++     AS+     S+E K  ++SS+  RR
Sbjct: 1   MASMTMTA-TFFP-AVAKVPSATGGRRLSVV----RASTSDNTPSLEVK--EQSSTTMRR 52

Query: 61  ELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           +L+F AAAAA CS+AKVAMAE EEPKRGT  AKKKYA VCVTMPTA+ICR
Sbjct: 53  DLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102


>sp|B3EWI4|PST2_PETHY Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida PE=1
           SV=1
          Length = 106

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 82/112 (73%), Gaps = 9/112 (8%)

Query: 1   MASMTMAAASLLPTSMA--KNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNG 58
           MAS+TM ++ L  +++A  K P+A R  RG  +V+ KA      NV +  KN +ES ++G
Sbjct: 1   MASITMMSSFLGGSTVAPAKVPSANR--RG--VVMVKAMHEGENNVVIS-KN-EESKNSG 54

Query: 59  RRELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           RREL FA AAAAACS+AK AMA+ EEPKRGTP+AKKKY+ VCVT PTARICR
Sbjct: 55  RRELFFAMAAAAACSVAKTAMAD-EEPKRGTPEAKKKYSSVCVTNPTARICR 105


>sp|P31336|PST2_GOSHI Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum
           GN=PSBT PE=4 SV=1
          Length = 105

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 74/110 (67%), Gaps = 6/110 (5%)

Query: 1   MASMTMAAASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRR 60
           MAS+TM  + L  T++ K       +R  L+V   A  ++ E+V M  + K E + NGRR
Sbjct: 1   MASITMTTSFLSTTNLTKGSPRITQRR--LVVANAAKGAQVESVQMSGERKTEGN-NGRR 57

Query: 61  ELVFAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMPTARICR 110
           E++FAAAAAA CS+A VA AE   PKRG+ +AKK YAPVCVTMPTARICR
Sbjct: 58  EMMFAAAAAAICSVAGVATAE---PKRGSAEAKKAYAPVCVTMPTARICR 104


>sp|Q3UC65|CA063_MOUSE UPF0471 protein C1orf63 homolog OS=Mus musculus GN=D4Wsu53e PE=1
           SV=1
          Length = 298

 Score = 30.0 bits (66), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 8   AASLLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSME----FKNKDESSSNGRRELV 63
           AA  L T+    PA+ RAK         ++  K E+   +     KN  E SS  +R + 
Sbjct: 198 AAKALGTANFDLPASLRAKEASQGTAVSSSGPKVEHSEKQTEDATKNTSEKSST-QRNIA 256

Query: 64  FAAAAAAACSIAKVAMAESEEPKRGTPDAKKKYAPVCVTMP 104
           F++  + A  + K   A  EE   G+P   KK +P  + +P
Sbjct: 257 FSSNNSVAKPLQKTTKAAVEEKSSGSPKIDKKKSPYGLWIP 297


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.118    0.315 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,038,390
Number of Sequences: 539616
Number of extensions: 977660
Number of successful extensions: 3423
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3383
Number of HSP's gapped (non-prelim): 51
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)