Query 033813
Match_columns 111
No_of_seqs 27 out of 29
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 10:48:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pq4_B Periplasmic nitrate red 54.7 6.4 0.00022 22.5 1.7 21 58-78 4-24 (35)
2 2a3m_A COG3005: nitrate/TMAO r 18.6 27 0.00092 23.8 0.2 22 59-80 2-23 (130)
3 3cx5_E Cytochrome B-C1 complex 15.3 1.6E+02 0.0056 21.1 3.7 13 54-66 17-29 (185)
4 2qjy_C Ubiquinol-cytochrome C 14.7 1.4E+02 0.0047 21.4 3.2 14 55-68 7-20 (187)
5 1pp9_E Ubiquinol-cytochrome C 13.0 1.1E+02 0.0037 22.4 2.3 12 54-65 27-38 (196)
6 1q90_R Cytochrome B6-F complex 10.9 3E+02 0.01 16.6 3.6 19 54-72 6-24 (49)
7 3sbq_A Nitrous-oxide reductase 8.9 73 0.0025 28.4 0.1 22 55-76 16-38 (638)
8 2elu_A Zinc finger protein 406 7.7 89 0.0031 18.5 0.1 8 92-99 15-22 (37)
9 4gi3_C Greglin; kazal type inh 6.6 1.5E+02 0.005 20.2 0.7 9 94-102 27-35 (83)
10 4hde_A SCO1/SENC family lipopr 6.2 1.8E+02 0.006 19.3 1.0 16 83-98 76-91 (170)
No 1
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=54.66 E-value=6.4 Score=22.54 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhh
Q 033813 58 GRRELVFAAAAAAACSIAKVA 78 (111)
Q Consensus 58 gRR~lmFAAAAAAvcsva~~A 78 (111)
.||+.+-+.+++++.+.+|..
T Consensus 4 sRR~FLK~~aaa~Aaaaag~~ 24 (35)
T 2pq4_B 4 SRRSFMKANAVAAAAAAAGLS 24 (35)
T ss_dssp CSHHHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHHHHHHHHhccc
Confidence 599999988877766666543
No 2
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound cytochrome C subunit; tetraheme cytochrome, electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=18.63 E-value=27 Score=23.79 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhh
Q 033813 59 RRELVFAAAAAAACSIAKVAMA 80 (111)
Q Consensus 59 RR~lmFAAAAAAvcsva~~AmA 80 (111)
||.|+++.+++.+..++..|++
T Consensus 2 kk~~~~~~~~~~~~~~~~~a~a 23 (130)
T 2a3m_A 2 RKSLFAVMVLALVAAFALPVIA 23 (130)
T ss_dssp ----------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHh
Confidence 4545444233445555555555
No 3
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=15.31 E-value=1.6e+02 Score=21.08 Aligned_cols=13 Identities=8% Similarity=0.250 Sum_probs=9.5
Q ss_pred cccchhHHHHHHH
Q 033813 54 SSSNGRRELVFAA 66 (111)
Q Consensus 54 ~~~~gRR~lmFAA 66 (111)
+...+||+.+..+
T Consensus 17 ~~~~~RR~fl~~~ 29 (185)
T 3cx5_E 17 NDADKGRSYAYFM 29 (185)
T ss_dssp TCTTHHHHHHHHH
T ss_pred CCCccHHHHHHHH
Confidence 4567899998654
No 4
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=14.74 E-value=1.4e+02 Score=21.44 Aligned_cols=14 Identities=29% Similarity=0.582 Sum_probs=8.7
Q ss_pred ccchhHHHHHHHHH
Q 033813 55 SSNGRRELVFAAAA 68 (111)
Q Consensus 55 ~~~gRR~lmFAAAA 68 (111)
...+||+.|..+.+
T Consensus 7 ~~~~RR~Fl~~~~~ 20 (187)
T 2qjy_C 7 HAGTRRDFLYYATA 20 (187)
T ss_dssp --CHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 45679998866543
No 5
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=13.02 E-value=1.1e+02 Score=22.39 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=8.2
Q ss_pred cccchhHHHHHH
Q 033813 54 SSSNGRRELVFA 65 (111)
Q Consensus 54 ~~~~gRR~lmFA 65 (111)
+...+||+++..
T Consensus 27 ~~~~~RR~fl~~ 38 (196)
T 1pp9_E 27 ESSEARKGFSYL 38 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred cCCchHHHHHHH
Confidence 345679998654
No 6
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=10.93 E-value=3e+02 Score=16.58 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=12.7
Q ss_pred cccchhHHHHHHHHHHHHH
Q 033813 54 SSSNGRRELVFAAAAAAAC 72 (111)
Q Consensus 54 ~~~~gRR~lmFAAAAAAvc 72 (111)
...-+||.+|-.....++.
T Consensus 6 ~pdm~RRqfln~l~~G~~a 24 (49)
T 1q90_R 6 VPDMNKRNIMNLILAGGAG 24 (49)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHH
Confidence 3567899998766544443
No 7
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=8.91 E-value=73 Score=28.42 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHH-HHhhhh
Q 033813 55 SSNGRRELVFAAAAAA-ACSIAK 76 (111)
Q Consensus 55 ~~~gRR~lmFAAAAAA-vcsva~ 76 (111)
..-+||++|-++|+++ +.+.+|
T Consensus 16 ~~~~rr~~~~~~a~~~~~~~~~~ 38 (638)
T 3sbq_A 16 LGLSRRGFLGASAVTGAAVAATA 38 (638)
T ss_dssp -----------------------
T ss_pred cCcchhhhhchhhhhhhhhhhcc
Confidence 4678999999888766 333433
No 8
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=7.66 E-value=89 Score=18.50 Aligned_cols=8 Identities=63% Similarity=0.904 Sum_probs=5.6
Q ss_pred hhhhcCCc
Q 033813 92 AKKKYAPV 99 (111)
Q Consensus 92 AKKkYApV 99 (111)
-||||..|
T Consensus 15 ckkkysdv 22 (37)
T 2elu_A 15 CKKKYSDV 22 (37)
T ss_dssp TTEECSSH
T ss_pred HHHHHHHH
Confidence 47888765
No 9
>4gi3_C Greglin; kazal type inhibitor, hydrolase-hydrolase inhibitor complex; 1.75A {Schistocerca gregaria}
Probab=6.62 E-value=1.5e+02 Score=20.16 Aligned_cols=9 Identities=67% Similarity=1.176 Sum_probs=6.7
Q ss_pred hhcCCceee
Q 033813 94 KKYAPVCVT 102 (111)
Q Consensus 94 KkYApVCVT 102 (111)
-.|.|||-+
T Consensus 27 ~iY~PVCGs 35 (83)
T 4gi3_C 27 LIYAPVCVE 35 (83)
T ss_dssp CCCCCEEEE
T ss_pred ccccceecc
Confidence 468999965
No 10
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=6.21 E-value=1.8e+02 Score=19.30 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=13.1
Q ss_pred CCCCCCChhhhhhcCC
Q 033813 83 EEPKRGTPDAKKKYAP 98 (111)
Q Consensus 83 ~ePKrGTpeAKKkYAp 98 (111)
-+|+|-|||.-|+|+.
T Consensus 76 vDp~~Dtp~~l~~y~~ 91 (170)
T 4hde_A 76 VDPDLDKPENLKAFIQ 91 (170)
T ss_dssp SCTTTCCHHHHHHHHT
T ss_pred cCcccccHHHHHHHHH
Confidence 3899999998888753
Done!