BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033814
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93YW0|EXEC1_ARATH Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1
PE=1 SV=1
Length = 684
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 85/110 (77%), Gaps = 5/110 (4%)
Query: 1 MEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADF 60
+EF+EYVEAVKLTGD VPAG+V FRAKIG+ LP++G P+E GV+A Y GQGR+AD
Sbjct: 577 IEFYEYVEAVKLTGDPYVPAGKVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADP 636
Query: 61 GFRNPKWVDGELLQLNGKGMGPYVKGAD-LGFLYVVPEQSFLVLFNRLKL 109
GFRNP+WVDGEL+ L+GK YVKG +GF+Y PE F++ FNRL+L
Sbjct: 637 GFRNPRWVDGELVILDGK----YVKGGPVVGFVYWAPEYHFVMFFNRLRL 682
>sp|A2BD94|FB31B_XENLA F-box only protein 31-B OS=Xenopus laevis GN=fbxo31-b PE=2 SV=1
Length = 523
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 8 EAVKLTGDLNVPAGEVTFRAKIGKGSRLPN 37
+A K+TGD NVPAG+ T + + +LP+
Sbjct: 322 KATKITGDPNVPAGQQTLEVDLTRPVQLPD 351
>sp|P75804|YLII_ECOLI Soluble aldose sugar dehydrogenase YliI OS=Escherichia coli (strain
K12) GN=yliI PE=1 SV=1
Length = 371
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 30 GKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPK------WVDGELLQLNGKGMGPY 83
GK RL ++G+ PD+ + + I +G RNP+ W + L +G G
Sbjct: 181 GKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDE 240
Query: 84 VKGADLGFLYVVPEQSFLVLFNRLKLPD 111
+ G Y P ++ + ++ K+P+
Sbjct: 241 INIPQKGKNYGWPLATWGINYSGFKIPE 268
>sp|Q2NR09|LEXA_SODGM LexA repressor OS=Sodalis glossinidius (strain morsitans) GN=lexA
PE=3 SV=1
Length = 202
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 60 FGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRL 107
GFR+P + L L KG V GA G ++ E+S L L R+
Sbjct: 35 LGFRSPNAAEEHLKALARKGAIEIVSGASRGIRLMIEEESGLPLIGRV 82
>sp|Q5HHC0|LEPH_STAAC Inactive signal peptidase IA OS=Staphylococcus aureus (strain COL)
GN=spsA PE=3 SV=1
Length = 174
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNG 77
+ D+ V ASY+ +I DF RN K +DG+++ N
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNN 129
>sp|Q6GIC4|LEPH_STAAR Inactive signal peptidase IA OS=Staphylococcus aureus (strain
MRSA252) GN=spsA PE=3 SV=1
Length = 174
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNG 77
+ D+ V ASY+ +I DF RN K +DG+++ N
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKKLDGDIIPPNN 129
>sp|P0A065|LEPH_STAAW Inactive signal peptidase IA OS=Staphylococcus aureus (strain MW2)
GN=spsA PE=3 SV=1
Length = 174
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNG 77
+ D+ V ASY+ +I DF RN K +DG+++ N
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNN 129
>sp|P0A066|LEPH_STAAU Inactive signal peptidase IA OS=Staphylococcus aureus GN=spsA PE=3
SV=1
Length = 174
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNG 77
+ D+ V ASY+ +I DF RN K +DG+++ N
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNN 129
>sp|Q6GAW2|LEPH_STAAS Inactive signal peptidase IA OS=Staphylococcus aureus (strain
MSSA476) GN=spsA PE=3 SV=1
Length = 174
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNG 77
+ D+ V ASY+ +I DF RN K +DG+++ N
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNN 129
>sp|P0A064|LEPH_STAAN Inactive signal peptidase IA OS=Staphylococcus aureus (strain N315)
GN=spsA PE=3 SV=1
Length = 174
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNG 77
+ D+ V ASY+ +I DF RN K +DG+++ N
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNN 129
>sp|P0A063|LEPH_STAAM Inactive signal peptidase IA OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=spsA PE=3 SV=1
Length = 174
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNG 77
+ D+ V ASY+ +I DF RN K +DG+++ N
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNN 129
>sp|B2VKA1|LEXA_ERWT9 LexA repressor OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99)
GN=lexA PE=3 SV=1
Length = 202
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 58 ADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRL 107
A GFR+P + L L KG+ V GA G ++ ++S L L R+
Sbjct: 33 AQLGFRSPNAAEEHLKALARKGVIEIVSGASRGIRLMMEDESGLPLIGRV 82
>sp|Q0D2D2|FBX31_XENTR F-box only protein 31 OS=Xenopus tropicalis GN=fbxo31 PE=2 SV=1
Length = 551
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 8 EAVKLTGDLNVPAGEVTFRAKIGKGSRLPN 37
+ K+TGD NVPAG+ T + + +LP+
Sbjct: 350 KVTKITGDPNVPAGQQTLEVDLTRPVQLPD 379
>sp|P59348|Y6755_BRAJA UPF0229 protein bll6755 OS=Bradyrhizobium japonicum (strain USDA
110) GN=bll6755 PE=3 SV=1
Length = 427
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 64 NPKWVDGELLQLNGKG----MGPYVKGADLGFLYVVPEQSFLVLF-NRLKLPD 111
N K+V+G+ LQ +G+G GP ++ F +V+ F+ LF + L+LPD
Sbjct: 79 NKKFVEGDYLQRSGQGSAKDSGPGEGDSEDAFRFVLSRDEFVDLFLDDLELPD 131
>sp|A4W5F6|LEXA_ENT38 LexA repressor OS=Enterobacter sp. (strain 638) GN=lexA PE=3 SV=1
Length = 202
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 60 FGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRL 107
GFR+P + L L KG+ V GA G +V E++ + L R+
Sbjct: 35 LGFRSPNAAEEHLKALARKGVLEIVSGASRGIRLLVEEETGIPLIGRV 82
>sp|A2RRT3|FB31A_XENLA F-box only protein 31-A OS=Xenopus laevis GN=fbxo31-a PE=2 SV=1
Length = 519
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 8 EAVKLTGDLNVPAGEVTFRAKIGKGSRLPN 37
+ K+TGD NVPAG+ T + + +LP+
Sbjct: 317 KVTKITGDPNVPAGQQTVEVDLTRPVQLPD 346
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.145 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,766,204
Number of Sequences: 539616
Number of extensions: 2152923
Number of successful extensions: 3209
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3194
Number of HSP's gapped (non-prelim): 18
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)