Query 033814
Match_columns 111
No_of_seqs 97 out of 99
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:36:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12014 DUF3506: Domain of un 100.0 2.9E-35 6.2E-40 217.2 8.5 74 1-77 59-134 (134)
2 cd04487 RecJ_OBF2_like RecJ_OB 64.0 5.4 0.00012 26.1 1.8 20 9-28 49-68 (73)
3 KOG2387 CTP synthase (UTP-ammo 46.4 5.7 0.00012 35.7 -0.4 20 4-23 74-93 (585)
4 PF08197 TT_ORF2a: pORF2a trun 43.5 11 0.00024 23.8 0.7 15 13-27 15-33 (49)
5 TIGR03737 PRTRC_B PRTRC system 39.7 49 0.0011 26.6 4.0 31 64-105 61-91 (228)
6 PF11869 DUF3389: Protein of u 39.3 34 0.00073 23.4 2.6 33 3-35 28-63 (75)
7 PF07619 DUF1581: Protein of u 34.3 32 0.00069 24.0 1.9 14 7-20 43-56 (84)
8 PF06868 DUF1257: Protein of u 29.3 86 0.0019 22.0 3.5 30 60-97 18-47 (105)
9 PF07495 Y_Y_Y: Y_Y_Y domain; 28.2 52 0.0011 19.7 2.0 13 17-29 35-47 (66)
10 PLN00115 pollen allergen group 26.2 68 0.0015 23.3 2.6 39 18-56 79-117 (118)
11 PF14460 Prok-E2_D: Prokaryoti 20.5 1.6E+02 0.0035 22.0 3.7 33 63-106 18-50 (175)
12 KOG3484 Cyclin-dependent prote 20.4 82 0.0018 22.2 1.9 17 91-108 57-73 (91)
No 1
>PF12014 DUF3506: Domain of unknown function (DUF3506); InterPro: IPR021894 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 131 to 148 amino acids in length. This domain has a conserved KLTGD sequence motif.
Probab=100.00 E-value=2.9e-35 Score=217.24 Aligned_cols=74 Identities=53% Similarity=0.809 Sum_probs=68.4
Q ss_pred CceeeEEEEEEeeCCCCCcCeeEEEEEE-cCCCccCCCCCCCCCCCCcceE-EEeeeEEcCCCCCCCceeeeEEEEEcC
Q 033814 1 MEFFEYVEAVKLTGDLNVPAGEVTFRAK-IGKGSRLPNRGKFPDELGVVAS-YSGQGRIADFGFRNPKWVDGELLQLNG 77 (111)
Q Consensus 1 ~~~~e~LeAvKLTGDpNVPrGevTf~A~-l~~~~~~~~~g~~p~e~~~~ar-~~g~G~VA~~GF~~p~~i~~~Lilis~ 77 (111)
++|+|+|||||||||||||||||||+|+ |++.+++ +++.++++.|+| ||||||||++||+|++||+|||++||+
T Consensus 59 ~~~~~~leAiKLTGDpNVPrGevtF~A~DiG~~~~i---~~a~~~~f~G~r~vk~~G~vA~~GF~~~~~id~eLilis~ 134 (134)
T PF12014_consen 59 REFRGRLEAIKLTGDPNVPRGEVTFRADDIGPGGRI---RVAHEGPFPGARRVKGQGHVAEPGFRNDKWIDGELILISG 134 (134)
T ss_pred ccccceEEEEEecCCCCCcCccEEEEecccCCCccc---ccccCCCCCceEEEecCCeEcCcCcCCCcceeeEEEEecC
Confidence 3699999999999999999999999999 9999998 566667777777 999999999999999999999999995
No 2
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=64.05 E-value=5.4 Score=26.10 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=17.4
Q ss_pred EEEeeCCCCCcCeeEEEEEE
Q 033814 9 AVKLTGDLNVPAGEVTFRAK 28 (111)
Q Consensus 9 AvKLTGDpNVPrGevTf~A~ 28 (111)
.|.++|-.++|+|++++.|+
T Consensus 49 ~V~v~G~v~~~~G~~ql~v~ 68 (73)
T cd04487 49 IVRVTGEVEPRDGQLQIEVE 68 (73)
T ss_pred EEEEEEEEecCCeEEEEEEe
Confidence 46788889999999999987
No 3
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=46.44 E-value=5.7 Score=35.71 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=18.5
Q ss_pred eeEEEEEEeeCCCCCcCeeE
Q 033814 4 FEYVEAVKLTGDLNVPAGEV 23 (111)
Q Consensus 4 ~e~LeAvKLTGDpNVPrGev 23 (111)
||+.-.|+||.|.|++-|++
T Consensus 74 YERfldi~Lt~dNNITtGKi 93 (585)
T KOG2387|consen 74 YERFLDITLTRDNNITTGKI 93 (585)
T ss_pred hhhhccceeeccCCcccchH
Confidence 78889999999999999986
No 4
>PF08197 TT_ORF2a: pORF2a truncated protein; InterPro: IPR013267 Most isolated ORF2 of TT virus (TTV) encode a 49 amino acid protein (pORF2a) because of an in-frame stop codon. ORF2s isolated from G1 TTV encode a 202 amino acid protein (pORF2ab) [].
Probab=43.46 E-value=11 Score=23.78 Aligned_cols=15 Identities=53% Similarity=0.846 Sum_probs=10.6
Q ss_pred eCCCCCcC----eeEEEEE
Q 033814 13 TGDLNVPA----GEVTFRA 27 (111)
Q Consensus 13 TGDpNVPr----GevTf~A 27 (111)
.|||+||| ||.|-+.
T Consensus 15 eg~prvPRAGAgGefthrs 33 (49)
T PF08197_consen 15 EGDPRVPRAGAGGEFTHRS 33 (49)
T ss_pred cCCCCCcccccccceeecc
Confidence 59999998 5555443
No 5
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=39.72 E-value=49 Score=26.62 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=25.0
Q ss_pred CCceeeeEEEEEcCCCCCcCccCCeeEEEEeecCCeeEEEEe
Q 033814 64 NPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFN 105 (111)
Q Consensus 64 ~p~~i~~~Lilis~d~~~~~~~g~~~gfvw~~p~~~~~~~f~ 105 (111)
+..|+|..++.++++. .+||.|-+.=.++|+
T Consensus 61 ~~g~lp~nvL~~~~~~-----------~vWy~p~~~R~v~F~ 91 (228)
T TIGR03737 61 DLEFLDPNVLALSPGL-----------MVWWTPAATRRVFFQ 91 (228)
T ss_pred CCcccCccEEEeCCCe-----------EEEEecCceEEEEEe
Confidence 4588999999999887 689999774466885
No 6
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=39.34 E-value=34 Score=23.45 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=26.7
Q ss_pred eeeEEEEEEeeCCCCC---cCeeEEEEEEcCCCccC
Q 033814 3 FFEYVEAVKLTGDLNV---PAGEVTFRAKIGKGSRL 35 (111)
Q Consensus 3 ~~e~LeAvKLTGDpNV---PrGevTf~A~l~~~~~~ 35 (111)
.+-..++|+|-|++|| -.|++.|-.+++..-++
T Consensus 28 LqA~~D~I~li~~anvi~A~g~~vkWSikLD~eeQL 63 (75)
T PF11869_consen 28 LQAQVDDITLIGGANVIIANGGEVKWSIKLDNEEQL 63 (75)
T ss_pred EEEeeeehhhcCCCcEEEEeCcceEEEEEcCCHHHH
Confidence 3557889999999998 57999999999865443
No 7
>PF07619 DUF1581: Protein of unknown function (DUF1581); InterPro: IPR022660 Several Rhodopirellula baltica proteins share this domain. They also match PF07622 from PFAM
Probab=34.31 E-value=32 Score=24.04 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=12.0
Q ss_pred EEEEEeeCCCCCcC
Q 033814 7 VEAVKLTGDLNVPA 20 (111)
Q Consensus 7 LeAvKLTGDpNVPr 20 (111)
+.-+.|||||-||+
T Consensus 43 frNlrItG~P~iP~ 56 (84)
T PF07619_consen 43 FRNLRITGSPEIPD 56 (84)
T ss_pred eeeeEEcCCCcCCC
Confidence 45688999999997
No 8
>PF06868 DUF1257: Protein of unknown function (DUF1257); InterPro: IPR009666 This family represents Ycf35, which is encoded in algal chloroplast and in cyanobacteria. The function of these proteins are unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=29.27 E-value=86 Score=21.99 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=19.0
Q ss_pred CCCCCCceeeeEEEEEcCCCCCcCccCCeeEEEEeecC
Q 033814 60 FGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPE 97 (111)
Q Consensus 60 ~GF~~p~~i~~~Lilis~d~~~~~~~g~~~gfvw~~p~ 97 (111)
.||.+.. ..++|++- .-+|.+|||.|=...
T Consensus 18 rgy~gq~-~~aelvi~-------~~~~~DIGF~wn~~~ 47 (105)
T PF06868_consen 18 RGYRGQT-QKAELVIK-------QNNGYDIGFRWNGDG 47 (105)
T ss_pred cccCCCe-EEEEEEEE-------cCCCccEEEEECCCc
Confidence 4553332 56777662 246789999988655
No 9
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=28.18 E-value=52 Score=19.72 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=9.9
Q ss_pred CCcCeeEEEEEEc
Q 033814 17 NVPAGEVTFRAKI 29 (111)
Q Consensus 17 NVPrGevTf~A~l 29 (111)
|.|.|.++|.+..
T Consensus 35 ~L~~G~Y~l~V~a 47 (66)
T PF07495_consen 35 NLPPGKYTLEVRA 47 (66)
T ss_dssp S--SEEEEEEEEE
T ss_pred eCCCEEEEEEEEE
Confidence 7899999999994
No 10
>PLN00115 pollen allergen group 3; Provisional
Probab=26.25 E-value=68 Score=23.27 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=25.5
Q ss_pred CcCeeEEEEEEcCCCccCCCCCCCCCCCCcceEEEeeeE
Q 033814 18 VPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGR 56 (111)
Q Consensus 18 VPrGevTf~A~l~~~~~~~~~g~~p~e~~~~ar~~g~G~ 56 (111)
.|+|-.|||.....+..+--+.++|.....+..|++.=|
T Consensus 79 pl~GPlS~R~t~~~G~~~va~nViPa~Wk~G~tY~s~vq 117 (118)
T PLN00115 79 PLKGPFSVRFLVKGGGYRVVDDVIPESFKAGSVYKTGIQ 117 (118)
T ss_pred CCCCceEEEEEEeCCCEEEECceECCCCCCCCEEecccc
Confidence 567888888875544333334678887777777777543
No 11
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=20.49 E-value=1.6e+02 Score=22.03 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=23.5
Q ss_pred CCCceeeeEEEEEcCCCCCcCccCCeeEEEEeecCCeeEEEEee
Q 033814 63 RNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNR 106 (111)
Q Consensus 63 ~~p~~i~~~Lilis~d~~~~~~~g~~~gfvw~~p~~~~~~~f~R 106 (111)
..+.|++-+++-.+++. .+||.|-+.-.+.|+-
T Consensus 18 ~~~~~l~~~vL~~~~~~-----------~vW~~p~~~r~v~F~~ 50 (175)
T PF14460_consen 18 SKPEFLPPNVLAKGPGT-----------VVWWNPPQKRRVFFKN 50 (175)
T ss_pred CCCcCcCCcEEEECCCe-----------EEEEcCCeEEEEEEec
Confidence 34566666777777777 6899997755667775
No 12
>KOG3484 consensus Cyclin-dependent protein kinase CDC28, regulatory subunit CKS1, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=20.35 E-value=82 Score=22.24 Aligned_cols=17 Identities=35% Similarity=0.641 Sum_probs=13.5
Q ss_pred EEEeecCCeeEEEEeecc
Q 033814 91 FLYVVPEQSFLVLFNRLK 108 (111)
Q Consensus 91 fvw~~p~~~~~~~f~Rl~ 108 (111)
|....|+.|++ ||+|..
T Consensus 57 YmiH~PEpHIl-LFrRp~ 73 (91)
T KOG3484|consen 57 YMIHAPEPHIL-LFRRPL 73 (91)
T ss_pred EEecCCCceEE-EEeccc
Confidence 55678899988 999954
Done!