Query 033814
Match_columns 111
No_of_seqs 97 out of 99
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 10:49:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q5l_A Chaperone protein DNAK; 13.4 2.5E+02 0.0084 18.9 4.1 18 5-22 80-97 (135)
2 2op6_A Heat shock 70 kDa prote 13.3 2.9E+02 0.0099 18.6 4.5 18 5-22 63-80 (152)
3 3va4_A Mediator of DNA damage 13.2 2.1E+02 0.0071 19.3 3.7 49 56-110 81-129 (132)
4 2jnz_A PHL P 3 allergen; timot 13.2 61 0.0021 22.1 0.9 37 17-53 70-106 (108)
5 3r07_C Putative lipoate-protei 12.0 80 0.0027 20.4 1.1 12 6-17 29-40 (91)
6 3v9f_A Two-component system se 11.7 1.2E+02 0.004 25.1 2.3 14 16-29 743-756 (781)
7 3ott_A Two-component system se 11.6 1.2E+02 0.0041 25.0 2.3 14 16-29 715-728 (758)
8 2axw_A DRAD invasin; homodimer 11.5 4.3E+02 0.015 18.8 5.2 19 10-28 95-113 (134)
9 2qzg_A Conserved uncharacteriz 11.3 59 0.002 22.1 0.3 8 12-19 68-75 (94)
10 2qsb_A UPF0147 protein TA0600; 10.8 60 0.002 21.9 0.2 8 12-19 64-71 (89)
No 1
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=13.39 E-value=2.5e+02 Score=18.94 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=14.9
Q ss_pred eEEEEEEeeCCCCCcCee
Q 033814 5 EYVEAVKLTGDLNVPAGE 22 (111)
Q Consensus 5 e~LeAvKLTGDpNVPrGe 22 (111)
+.|-..+|+|-|.-|+|+
T Consensus 80 ~~Lg~f~l~gipp~p~G~ 97 (135)
T 1q5l_A 80 KSLGQFNLDGINPAPRGM 97 (135)
T ss_dssp EEEEEEECCCCCSCCSSS
T ss_pred cEEEEEEEeCCCCCCCce
Confidence 457778899999889997
No 2
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=13.31 E-value=2.9e+02 Score=18.56 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.8
Q ss_pred eEEEEEEeeCCCCCcCee
Q 033814 5 EYVEAVKLTGDLNVPAGE 22 (111)
Q Consensus 5 e~LeAvKLTGDpNVPrGe 22 (111)
..|-..+|+|-|.-|+|+
T Consensus 63 ~~lg~~~l~gipp~p~G~ 80 (152)
T 2op6_A 63 HKLGNFDVTGIPPAPRGV 80 (152)
T ss_dssp EEEEEEEECCCCCCCTTC
T ss_pred CEeEEEEEECCCCCCCCC
Confidence 457778899999889996
No 3
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=13.22 E-value=2.1e+02 Score=19.33 Aligned_cols=49 Identities=18% Similarity=0.128 Sum_probs=33.4
Q ss_pred EEcCCCCCCCceeeeEEEEEcCCCCCcCccCCeeEEEEeecCCeeEEEEeeccCC
Q 033814 56 RIADFGFRNPKWVDGELLQLNGKGMGPYVKGADLGFLYVVPEQSFLVLFNRLKLP 110 (111)
Q Consensus 56 ~VA~~GF~~p~~i~~~Lilis~d~~~~~~~g~~~gfvw~~p~~~~~~~f~Rl~l~ 110 (111)
.|.+.|=+|..|++++-+.+..+.-.++..|..|-| ....+.|.+++.+
T Consensus 81 ~l~Dl~S~NGT~vNg~~i~l~~~~~~~L~~GD~I~l------G~~~l~f~~~~~p 129 (132)
T 3va4_A 81 ILQDCGSLNGTQIVKPPRVLPPGVSHRLRDQELILF------ADFPCQYHRLDVP 129 (132)
T ss_dssp EEEECSCSSCEEETTTTEEECTTCCEECCTTCEEEE------TTEEEEEEECCCC
T ss_pred EEEECCCCCCeEECCEEcccCCCCEEECCCCCEEEE------CCEEEEEEECCCC
Confidence 688888899999999886555444345666666655 2334478887765
No 4
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}
Probab=13.18 E-value=61 Score=22.12 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=23.8
Q ss_pred CCcCeeEEEEEEcCCCccCCCCCCCCCCCCcceEEEe
Q 033814 17 NVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSG 53 (111)
Q Consensus 17 NVPrGevTf~A~l~~~~~~~~~g~~p~e~~~~ar~~g 53 (111)
+.+.|-+|||+..+.+..+....++|.....+..|++
T Consensus 70 ~~L~GplSfRvtts~G~~~va~nViPa~W~~Gqty~s 106 (108)
T 2jnz_A 70 KPLVGPFNFRFMSKGGMRNVFDEVIPTAFSIGKTYKP 106 (108)
T ss_dssp SCCCSSEEEEEEETTTEEEEEEEEECSSCCTTCEECC
T ss_pred CCCCCCEEEEEEEcCCcEEEECeEECCCCCCCCEEeC
Confidence 3578888998886554333233467777666666655
No 5
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=11.99 E-value=80 Score=20.37 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=9.8
Q ss_pred EEEEEEeeCCCC
Q 033814 6 YVEAVKLTGDLN 17 (111)
Q Consensus 6 ~LeAvKLTGDpN 17 (111)
.++.+|++||=-
T Consensus 29 ~I~~vki~GDFf 40 (91)
T 3r07_C 29 RIKDIHISGDFF 40 (91)
T ss_dssp EEEEEEEEEEBC
T ss_pred EEEEEEEEcccC
Confidence 478899999966
No 6
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=11.66 E-value=1.2e+02 Score=25.10 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=12.4
Q ss_pred CCCcCeeEEEEEEc
Q 033814 16 LNVPAGEVTFRAKI 29 (111)
Q Consensus 16 pNVPrGevTf~A~l 29 (111)
.|.|.|.++|+++.
T Consensus 743 tnL~pG~Y~f~V~a 756 (781)
T 3v9f_A 743 RNIPPGKYEFLVKA 756 (781)
T ss_dssp CSCCSEEEEEEEEE
T ss_pred cCCCCceEEEEEEE
Confidence 48999999999983
No 7
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=11.63 E-value=1.2e+02 Score=24.98 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=12.4
Q ss_pred CCCcCeeEEEEEEc
Q 033814 16 LNVPAGEVTFRAKI 29 (111)
Q Consensus 16 pNVPrGevTf~A~l 29 (111)
.|.|.|.++|+++.
T Consensus 715 tnL~pG~Y~f~V~a 728 (758)
T 3ott_A 715 SNLSYGNYQLIISK 728 (758)
T ss_dssp CSCCSEEEEEEEEE
T ss_pred cCCCCccEEEEEEE
Confidence 38999999999993
No 8
>2axw_A DRAD invasin; homodimer, beta-sandwich, immunoglobulin-like fold, swapped terminal strands, cell invasion; HET: GOL; 1.05A {Escherichia coli} SCOP: b.2.3.2
Probab=11.51 E-value=4.3e+02 Score=18.80 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=12.2
Q ss_pred EEeeCCCCCcCeeEEEEEE
Q 033814 10 VKLTGDLNVPAGEVTFRAK 28 (111)
Q Consensus 10 vKLTGDpNVPrGevTf~A~ 28 (111)
|-.-||.-||+++++|...
T Consensus 95 Vv~DGnQ~V~~D~Y~lsv~ 113 (134)
T 2axw_A 95 VMADGNQDIAPGEYRFSVG 113 (134)
T ss_dssp EEESSSBCCCSEEEEEEEE
T ss_pred EEEeCCEecCCCeEEEEEE
Confidence 4456777777777666554
No 9
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=11.27 E-value=59 Score=22.13 Aligned_cols=8 Identities=38% Similarity=0.787 Sum_probs=6.4
Q ss_pred eeCCCCCc
Q 033814 12 LTGDLNVP 19 (111)
Q Consensus 12 LTGDpNVP 19 (111)
++-|||+|
T Consensus 68 ISnDPNmP 75 (94)
T 2qzg_A 68 ISEDPNMP 75 (94)
T ss_dssp HTTCTTCC
T ss_pred hhcCCCCC
Confidence 46799998
No 10
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=10.78 E-value=60 Score=21.90 Aligned_cols=8 Identities=50% Similarity=0.875 Sum_probs=6.4
Q ss_pred eeCCCCCc
Q 033814 12 LTGDLNVP 19 (111)
Q Consensus 12 LTGDpNVP 19 (111)
++-|||+|
T Consensus 64 ISnDPNmP 71 (89)
T 2qsb_A 64 MANDPNVP 71 (89)
T ss_dssp HHTCTTSC
T ss_pred hhcCCCCC
Confidence 45699998
Done!